Next Generation Sequencing - Visualization -

Arif Hossain

Kyung Min Su

Content

Visualization Issues

NGSView

Tablet

Visualization Issues

Huge Data

Various Format

Rendering and Navigation

Extensibility

NGSView

Berkeley DB engine

Front end converter XML format

Open and Documented API http://ngsview.sourceforge.net

NGSView

NGSView

NGSView

Tablet High-performance visualization and data navigation. Display of reads in both packed and stacked formats. Paired end visualization support. File format support for ACE, AFG, MAQ, SOAP2, SAM

and BAM. Search and locate reads by name across entire data

sets. Support for Windows, Apple Mac OS X, Linux and

Solaris, in 32 and 64-bit.

Tablet

Tablet

Tablet

Question?

NGSView http://ngsview.sourceforge.net

Tablet http://bioinf.scri.ac.uk/tablet