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GPU Computing with Amazon EC2
Deepak Singh@mndoci
P r i n c i p a l P r o d u c t M a n a g e r
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Amazon Web Services
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4
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2
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1. Infrastructure
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ec2-run-instances
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secure
global
on demand
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programmable
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elastic
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instance types
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standard (m1)high memory (m2)
high CPU (c1)
t1.micro
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high performance
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“Our 40-instance (m2.2xlarge) cluster can scan, filter, and aggregate 1 billion rows in 950 milliseconds.”
Mike Driscoll - Metamarkets
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cluster computing
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MPI
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bandwidth intensive
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Cluster Compute Instance
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2*Intel Xeon 55708 cores w/HT23 GB RAM1.7 TB disk
HVMcc1.4xlarge
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10 gig E
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PlacementGroup
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Placementgroup
full-
bisection
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linpack
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Cores 7040
Rmax 41.82
Rpeak 82.51
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231
November 2010
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451
June 2011
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42
November 2011
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HPC is evolving
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2*Intel Xeon 557022 GB RAM1.7 TB disk
HVM2*NVidia M2050
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AMBER
JAC NVE: 46.92 ns/day
Factor IX: 13.49 ns/day
Cellulose NVE: 3.07 ns/day
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optimizing costs
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on-demand
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reserved
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spot
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30,472 cores
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$1279/hr
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2. Orchestration
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AWS CloudFormation
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bootstrap
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Cloud Init
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#cloud-configpackages:! - httpd!runcmd:! - /etc/init.d http start! - echo "<h1>hello, world"</h1> \! ! > /var/www/html/index.html
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#!/bin/shec2-run-instances ami-8c1fece5 \! -n 1 \! -t m1.small \! -g deesinghdemo-SG \! -k deesinghdemo-keypair \! --user-data-file \.\cloudconfig.txt
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chef/puppet
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familiar tools
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LSF
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Grid Engine
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Bright Cluster Manager
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combining worlds
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MIT Starcluster
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$ starcluster start mycluster$ starcluster listclusters
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http://www.bioteam.net/2011/03/dude-you-got-some-chef-in-my-starcluster/
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Provisions ClusterShared Storage
MonitoringBootstraps StarCluster
Includes 200 GB Public Dataset
Provisioned Stack = Submit jobs to Grid Engine
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