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Emerging Technologies in Preparedness: View from the Sentinel Level Laboratory
James W. Snyder, Ph.D. D(ABMM)University of Louisville
American Society for [email protected]
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DISCLOSURES
BioFire Defense,LLC Proxy Board
OpGen, Inc; Advisory Board
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OBJECTIVES
• Review role of Sentinel Laboratories in the Laboratory Response Network
• Current technology • Future BT Diagnostic technology designed for
DoD using a common instrument found in Sentinel Laboratories
• SAFETY
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RedLine Alert™ Test
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Principles of Test• Antigen Capture
• Antibody Sandwich Format– Monoclonal Ab as
Detector (colloidal gold labeled)
– Polyclonal Ab as Capture
• Lateral Flow Device
• Visual Detection of Colored Line for Positive
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Intended UseThe Tetracore RedLine Alert Test is an immunochromatographic test intended for the rapid, in vitro qualitative presumptive identification of Bacillus anthracis from non-hemolytic Bacillus colonies cultured on sheep blood agar plates. The test is intended for use in clinical, public health, and hospital laboratories in conjunction with other markers and testing for the presumptive identification of Bacillus anthracis.
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Interpretation of Results
If the test is positive and the bacterial colony is non-hemolytic, B. anthracis cannot be ruled out. Submit the sample to the State Public Health Laboratory or State Public Health Department for confirmation.
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Summary of Additional Biothreat Alert Test Strips
• Plague Brucella• Tularemia Abrin• Ricin Proficiency Test• Botulinum Toxin Sample Collection
Kit• Staph Entertotoxin BW Simulants• Orthopox
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RedLine Alert
• Inoculum dependent• Expensive ($22 – 25)• Presumptive• Cost-effective?• Low utilization in Sentinel Laboratories• Not a substitute for LRN Sentinel Protocols• Results MUST be confirmed by a certified
laboratory (LRN Reference Laboratory)
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Current Technologies
• BT Agents1. Reverse Transcription-PCR-Electrospray
Ionization Mass Spectrometry (ESI-MS)- Amplicons generated via (RT)-PCR
2. MALDI-TOF MS- used in 10-15% (estimated) Sentinel
Laboratories
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RT-PCR ESI-MS
• Bacillus anthracis• Yersinia pestis• Francisella tularensis• Brucella spp.• Burkholderia spp.• Rickettsia prowazekii
Jeng, et al. JCM. 2013: 51
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MALDI-TOF
Bruker
Kiester, BD
bioMurieux
Microscan
Mass Spectrometry
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MALDI-TOF MS
• Revolutionizing Clinical Microbiology• Recently FDA approved• Rapid, Inexpensive (initial capital expense)• Bacteria, Fungi, AFB, Antimicrobial Resistance• Separate Biothreat Package
- B. anthracis - Francisella- Brucella - Yersinia pestis- Burkholderia mallei - C. botulinum
• Shigella, Salmonella, Vibrio, Xanthomonas albilineans
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MALDI-TOF MS
• Protein Extraction- trifluoracetic- chloroform - acetonitrile- ethanol-formic acid- ethanol, formic acid, acetonitrile
• Standardization? (Growth Conditions?, Density of test Inoculum)
• BSL-3 or BSL-2/BSL-3?
Drevinek, et al., Letters in Applied Microbiol., 2012, 55Karger, et al., JCM. 2013, 51; Khot, et al., JCM, 2012, 50
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Rule-Out Testing and MALDI-TOF• Recommended Extraction Method to ensure safety of testing
personnel and instrument contamination in a BSL-2 environment?
• Laboratory acquired infections via aerosols or incomplete decontamination of instrument
- current safety study by APHL/ASM- organism viability (matrix treatment, extraction)?- sporocidal?
• Extent of, and reliability of data bases for BT agents?• LRN Reference Labs responsible for confirmatory testing• Sentinel Protocols for Rule-Out • Reference Labs proactive in training/educating Sentinel Labs
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FilmArray - Simple, Easy, Fast
• Laboratory Platform• Commercial BioThreat Panel Available• DTRA Funded Development of Dengue and
Malaria Assays (modified BWA panel)• Down select US DoD Next Generation
Diagnostic System (NGDS) • (JBAIDS Replacement)
• 125 Systems in US DoD• UK MOD >20 Systems
• 2014-2015 Programs around FilmArray
February 25, 2014 BioFire Defense Board Introduction 16
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FilmArray Commercial BioThreat Panel*
Viral Pathogens Bacterial Pathogens Toxin Gene TargetsEbola virus Bacillus anthracis
(pXO1, pXO2, chromosomal)Ricin toxin gene from Ricinus communis
Marburg virus Yersinia pestis SEB gene from Staphylococcus aureus
Eastern Equine Encephalitis virus
Francisella tularensis Botulinum toxin from Clostridium botulinum
Western Equine Encephalitis virus
Brucella(melitensis species)
Venezuelan Equine Encephalitis virus
Burkholderia species(mallei, pseudomallei)
Variola major virus Coxiella burnetii
Orthopox virus Rickettsia species(spotted fever group, typhus group)
*Restricted to Department of Defense
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SUMMARY
• Sentinel Labs desire to remain on “cutting edge”
• MALDI-TOF biggest challenge• Filmarray BT technology and Sentinel Labs?• Strengthen Public Health and Private Sector
partnership• SAFETY, SAFETY, SAFETY
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THANK YOU!
QUESTIONS?