Download - BLAST FOR GENOMICS
BLASTBLAST FOR GENOMICS FOR GENOMICS
Jianxin [email protected]
Department of AgronomyPurdue University
Soybean Genome Sequencing Project Soybean Genome Sequencing Project DOE-JGI Community Sequencing Program DOE-JGI Community Sequencing Program
Brassica Genome Sequencing Project Brassica Genome Sequencing Project BGI-Shenzhen, Chinese Academy of Agricultural BGI-Shenzhen, Chinese Academy of Agricultural Sciences Sciences
Transposable elements (TEs), popularly called “jumping genes” are sequences of DNA that can move around to different chromosomal positions in a cell.
First TEs were discovered in maize in 1948 by Barbara McClintock
Awarded the Nobel Prize in 1983
Why transposable elements?
(1902-1992)
TEs make up a large fraction of genome sizes in most higher organisms:
TEs were often referred to be “molecular junk”, but are now recognized as important, even crucial parts of the blueprints of plants and animals:
~50% ~35%
Schmutz et al., 2010, Nature
The Landscape of the Soybean GenomeThe Landscape of the Soybean Genome
157 families
353 families
42%
16%
58%
Du et al., 2010, BMC Genomics
Structure-based analysis
and
Homology-based analysis
Structure-based analysis
and
Homology-based analysis
(BLAST)(BLAST)