Download - Albert-Einstein-Institut Cactus: Developing Parallel Computational Tools to Study Black Hole, Neutron Star (or Airplane...) Collisions

Albert-Einstein-Institut www.aei-potsdam.mpg.de

Cactus: Developing Parallel Computational Tools to Study Black Hole, Neutron Star (or Airplane...) Collisions

• Solving Einstein’s Equations, Black Holes, and Gravitational Wave Astronomy

• Cactus, a new community simulation code framework– Toolkit for many PDE systems

– Suite of solvers for Einstein and astrophysics systems

• Recent Simulations using Cactus– Black Hole Collisions, Neutron Star Collisions

– Collapse of Gravitational Waves

– Aerospace test project

• Metacomputing for the general user: what a scientist really wants and needs– Distributed Computing Experiments with

Cactus/Globus

Ed SeidelAlbert-Einstein-InstitutMPI-Gravitationsphysik& NCSA/U of IL

Ed SeidelAlbert-Einstein-InstitutMPI-Gravitationsphysik& NCSA/U of IL


Einstein’s Equations and Gravitational Waves• Einstein’s General Relativity

– Fundamental theory of Physics (Gravity)– Among most complex equations of physics

• Dozens of coupled, nonlinear hyperbolic-elliptic equations with 1000’s of terms• Barely have capability to solve after a century

– Predict black holes, gravitational waves, etc.

• Exciting new field about to be born: Gravitational Wave Astronomy– Fundamentally new information about Universe– What are gravitational waves??: Ripples in spacetime curvature, caused by matter motion,

causing distances to change:

• A last major test of Einstein’s theory: do the exist?– Eddington: “Gravitational waves propagate at the speed of thought”– 1993 Nobel Prize Committee: Hulse-Taylor Pulsar (indirect evidence)– 20xx Nobel Committee: ??? (For actual detection…)

s(t) h = s/s ~ 10-22 ! Colliding BH’s and NS’s...


Teraflop Computation, AMR, Elliptic-Hyperbolic, ???

Numerical Relativity

Waveforms: We Want to Compute What Happens in Nature...

PACSVirtual Machine Room


Black Holes: Excellent source of waves

• Need Cosmic Cataclysms to provide strong waves!

• BH’s have very strong gravity, collide near speed of light, have ~3-100+ solar masses!

• May collide “frequently”– Not very often local region of space, but..

– Perhaps ~3 per year within 200Mpc, range of detectors…

• Need to have some idea what the signals will look like if we are to detect and understand them…


Einstein Equations: New Formulations, New Capabilities

• Einstein Eqs.: G(ij) = 8T

• Traditional Evolution Equations: ADM– ∂tt = S() (Think Maxwell: ∂E/ ∂t = Curl B, ∂B/∂t = - Curl E)

• S() has thousands of terms (very ugly!)

– 4 nonlinear elliptic constraints (Think Maxwell: Div B = Div E = 0)

– 4 gauge conditions (often elliptic) (Think Maxwell: —– Numerical Methods “ad hoc”. Not manifestly hyperbolic

• NEW: First Order Symmetric Hyperbolic

∂tu+ ∂iFi(u)= S(u)– u is a vector of many fields, typically of order 50

– Complete set of Eigenfields (under certain conditions…)

– Many variations on these formulations, dozens of papers since 1992

– Elliptic equations still there…


Computational Needs for 3D Numerical Relativity• Explicit Finite Difference Codes

– ~ 104 Flops/zone/time step

– ~ 100 3D arrays

• Require 10003 zones or more– ~1000 Gbytes

– Double resolution: 8x memory, 16x Flops

• TFlop, Tbyte machine required

• Parallel AMR, I/O essential

• A code that can do this could be useful to other projects (we said this in all our grant proposals)!– Last 2 years devoted to making this useful

across disciplines…

– All tools used for these complex simulations available for other branches of science, engineering...

•InitialData: 4 coupled nonlinear elliptics•Evolution

• hyperbolic evolution• coupled with elliptic eqs.

t=0

t=100


Any Such Computation Requires Incredible Mix of Varied Technologies and Expertise!

• Many Scientific/Engineering Components– Physics, astrophysics, CFD, engineering,...

• Many Numerical Algorithm Components– Finite difference methods? Unstructured meshes?

– Elliptic equations: multigrid, Krylov subspace, preconditioners,...

– Mesh Refinement?

• Many Different Computational Components– Parallelism (HPF, MPI, PVM, ???)

– Architecture Efficiency (MPP, DSM, Vector, PC Clusters, ???)

– I/O Bottlenecks (generate gigabytes per simulation, checkpointing…)

– Visualization of all that comes out!

• Scientist wants to focus on top bullet, but all required for results...


This is fundamental question addressed by Cactus.

• Clearly need teams, with huge expertise base to attack such problems...

• In fact, need collections of communities to solve such problems...

• But how can they work together effectively?

• We need a simulation code environment that encourages this...

These are the fundamental issues addressed by Cactus.• Providing advanced comp. Science to scientists/engineers• Providing collaborative infrastructure for large groups


Grand Challenges : NSF Black Hole and NASA Neutron Star Projects

• University of Texas (Matzner, Browne), • NCSA/Illinois/AEI (Seidel, Saylor, Smarr,

Shapiro, Saied)• North Carolina (Evans, York)• Syracuse (G. Fox)• Cornell (Teukolsky)• Pittsburgh (Winicour)• Penn State (Laguna, Finn)

•NCSA/Illinois/AEI (Saylor, Seidel, Swesty, Norman)•Argonne (Foster)•Washington U (Suen)•Livermore (Ashby)•Stony Brook (Lattimer)

NEW!EU Network


What we learn from Grand Challenges

• Successful, but also problematic…– No existing infrastructure to support collaborative HPC

– Many scientists are bad Fortran programmers, and NOT computer scientists (especially physicists…like me…)

– Many sociological issues of large collaborations and different cultures

– Many language barriers...

– Applied mathematicians, computational

scientists, physicists have very different concepts

and vocabularies…

– Code fragments, styles, routines often clash

– Successfully merged code (after years) often impossible to transplant into more modern infrastructure (e.g., add AMR or switch to MPI…)

• Many serious problems...

Parlez-vous C? Nein! Nur Fortran!


Cactusnew concept in community developed simulation code infrastructure

• Developed as response to needs of these projects

• Numerical/computational infrastructure to solve PDE’sFreely available, open community source code: spirit of gnu/linux

• Cactus Divided in “Flesh” (core) and “Thorns” (modules or collections of subroutines)– User apps can be Fortran, C, C++; automated interface between them

– Parallelism abstracted and hidden (if desired) from user

– User specifies flow: when to call thorns; code switches memory on/off

• Many parallel utilities / features enabled by Cactus

• (nearly) All architectures supported: – Dec Alpha / SGI Origin 2000 / T3E / Linux clusters + laptops / Hitachi

/NEC/HP/Windows NT/ SP2, Sun

– Code portability, migration to new architectures very easy!


Modularity of Cactus...

Application 1a

Cactus Flesh

Application 2 ...

Sub-app

AMR (Grace, etc)

MPI layer 1 I/O layer 2

Remote Steer 3

Globus Metcomputing Services

User selectsdesired functionality...

Application 1b


Computational Toolkit: provides parallel utilities (thorns) for computational scientist

• Cactus is a framework or middleware for unifying and incorporating code from Thorns developed by the community– Choice of parallel library layers (Native MPI, MPICH, MPICH-G(2), LAM,

WMPI, PACX and HPVM)

– Portable, efficient (T3E, SGI, Dec Alpha, Linux, NT Clusters…)

– 3 mesh refinement schemes: Nested Boxes, GrACE, HLL (coming…)

– Parallel I/O (Panda, FlexIO, HDF5, etc…)

– Parameter Parsing

– Elliptic solvers (Petsc, Multigrid, SOR, etc…)

– Visualization Tools, Remote steering tools, etc…

– Globus (metacomputing/resource management)

– Performance analysis tools (Autopilot, PAPI, etc…)

– INSERT YOUR CS MODULE HERE...


PAPI

• Standard API for accessing the hardware performance counters on most microprocessors.

• Useful for tuning, optimization, debugging, benchmarking, etc.

http://icl.cs.utk.edu/projects/papi/http://www.cactuscode.org/Documentation/HOWTO/Performance-HOWTOhttp://www.cactuscode.org/Projects.html

• Java GUI available for monitoring the metrics

• Cactus thorn CactusPerformance/PAPI


GrACE

• Parallel/distributed AMR via C++ library

• Abstracts Grid Hierarchies, Grid Functions and Grid Geometries

• CactusPAGH will include a driver thorn which uses GrACE to provide AMR (KDI ASC Project)

http://www.caip.rutgers.edu/~parashar/TASSL/Projects/GrACE/index.htmlhttp://www.cactuscode.org/Workshops/NCSA99/talk23/index.htm


How to use Cactus: Avoiding the MONSTER code syndrome...

• [Optional: Develop thorns, according to some rules– e.g. specify variables through interface.ccl

– Specify calling sequence of the thorns for given problem and algorithm

(schedule.ccl)]

• Specify which thorns are desired for simulation (Einstein equations + special method 1 +HRSC hydro+wave finder + AMR + live visualization module + remote steering tool…)

• Specified code is then created, with only those modules, those variables, those I/O routines, this MPI layer, that AMR system,…, needed

• Subroutine calling lists generated automatically

• Automatically created for desired computer architecture

• Run it…


Cactus Computational Tool Kit• Flesh (core) written in C

• Thorns (modules) grouped in packages written in F77, F90, C, C++

• Thorn-Flesh interface fixed in 3 files written in CCL (Cactus Configuration Language):– interface.ccl: Grid Functions, Arrays, Scalars (integer, real, logical, complex)– param.ccl: Parameters and their allowed values– schedule.ccl: Entry point of routines, dynamic memory and communication

allocations

• Object oriented features for thorns (public, private, protected variables, implementations, inheritance) for clearer interfaces

• Compilation: – PERL parses the CCL files and creates the flesh-thorn interface code at compile time– Particularly important for the FORTRAN-C interface. FORTRAN arg. lists must be

known at compile time, but depend on the thorn list


High performance: Full 3D Einstein Equations solved on NCSA NT Supercluster, Origin 2000, T3E

Cactus Scaling on T3E-600

192

760

5980

47900

100

1000

10000

100000

1 10 100 1000

Number of Processors

Cactus on T3E 600 Total Mflops/sec

• Excellent scaling on many architectures– Origin up to 256 processors

– T3E up to 1024

– NCSA NT cluster up to 128 processors

• Achieved 142 Gflops/s on 1024 node T3E-1200 (benchmarked for NASA NS Grand Challenge)

• But, of course, we want much more… metacomputing, meaning connected computers...


“Egrid”

NCSA

Cactus Development Projects

AEI Cactus Group(Allen)

NASA “Round 2”(Saylor)

Round 3??

NSF KDI(Suen)

EU Network(Seidel)

Numerical RelativityAstrophysics

Grid Forum

DLR

Geophysics

DFN Gigabit(Seidel)

Microsoft

“GRADS”


Applications

• Neutron Stars– Developing capability to do full GR hydro

– Now can follow full orbits!

• DLR project: working to explore capabilities for aerospace industry

• Black Holes (prime source for GW)– Increasingly complex collisions: now doing

full 3D grazing collisions

• Gravitational Waves– Study linear waves as testbeds

– Move on to fully nonlinear waves

– Interesting Physics: BH formation in full 3D!


Evolving Pure Gravitational Waves• Einstein’s equations nonlinear, so low amplitude waves just propagate

away, but large amplitude waves may…– Collapse on themselves under their own self-gravity and actually form black holes

• Use numerical relativity: Probe GR in highly nonlinear regime– Form BH?, Critical Phenomena in 3D?, Naked singularities?

– … Little known about generic 3D behavior

• Take “Lump of Waves” and evolve– Large amplitude: get BH to form!

– Below critical value: disperses and can evolve “forever” as system returns to flat space

• We are seeing hints of critical phenomena, known from nonlinear dynamics


Comparison: sub vs. super-critical solutions

Newman-Penrose 4 (showing gravitational waves)with lapse underneath

QuickTime™ and aMotion JPEG A decompressor

are needed to see this picture.



Subcritical: no BH forms

Supercritical: BH forms!


Numerical Black Hole Evolutions• Binary IVP: Multiple Wormhole Model,

other models• Black Holes good candidates for

Gravitational Waves Astronomy– ~ 3 events per years within 200Mpc– But what are the waveforms?

• GW astronomers want to know!

S1 S2

P1

P2

QuickTime™ and aVideo decompressor



Now try first 3D “Grazing Collision”: Big Step: Spinning, “orbiting”, unequal mass BHs merging.

Evolution of 4 inx-z plane (rotation plane of BH)


are needed to see this picture.Horizon merger

Alcubierre et alresults

3843, 100GB simulation,Largest production relativitySimulation256 processor Origin 2000


Our Team Requires Grid Technologies, Big Machines for Big Runs

WashU

NCSA

Hong Kong

AEI

ZIB

Thessaloniki

How Do We:• Maintain/develop Code?• Manage Computer Resources?• Carry Out/monitor Simulation?

Paris

PACSVirtual Machine Room


• Cactus Portal, Distributed Simulation under active development at NASA-Ames

• Deutsches Luft- und Raumfahrtzentrum (DLR) Pilot Project– a CFD code (Navier-Stokes with Turbulence model or Euler) with

special extension to calculate turbine streams. Can be used for "normal" CFD problems as well.

– based on finite volume discretization on a block structured regular cartesian grid.

– has currently simple MPI parallelization.

– Plugging into Cactus to evaluate

Aerospace Applications


What we need and want in simulation science: a Portal to provide the following...

• Got an idea? Write Cactus module, link to other modules, and…• Find resources

– Where? NCSA, SDSC, Garching, Boeing…???– How many computers? Distribute Simulations?– Big jobs: “Fermilab” at disposal: must get it right while the beam is on!

• Launch Simulation– How do get executable there?– How to store data?– What are local queue structure/OS idiosyncracies?

• Monitor the simulation– Remote Visualization live while running

• Limited bandwidth: compute viz. inline with simulation• High bandwidth: ship data to be visualized locally

– Visualization server: all privileged users can login and check status/adjust if necessary• Are parameters screwed up? Very complex!• Call in an expert colleague…let her watch it too

• Steer the simulation– Is memory running low? AMR! What to do? Refine selectively or acquire additional

resources via Globus? Delete unnecessary grids? • Postprocessing and analysis

– 1TByte output at NCSA, research groups in St. Louis and Berlin…how to deal with this?


Cactus Computational Toolkit

Science, Autopilot, AMR, Petsc, HDF, MPI, GrACE, Globus, Remote Steering...

A Portal to Computational Science: The Cactus Collaboratory

1. User has scienceidea...

3. Selects Appropriate Resources...

5. Collaborators log in to monitor...

4. Steers simulation, monitors performance...

2. Composes/Builds Code Components w/Interface...

Want to integrate and migrate this technology to the generic user...


Remote Visualization

IsoSurfaces and Geodesics

Contour plots(download)

Grid FunctionsStreaming

HDF5

Amira

Amira

LCA Vision

OpenDX


Remote Visualization Tools under Development

• Live data streaming from Cactus simulation to viz client– Clients: OpenDX, Amira, LCA Vision, Xgraph

• Protocols– Precomputed Viz run inline with the simulation:

• Isosurfaces, geodesics

– HTTP:

• Parameters, xgraph data, Jpegs, viewed and controlled from any web browser

– Streaming HDF5: sends raw data from resident memory of supercomputer

• HDF5 provides downsampling and hyperslabbing

• all above data, and all possible HDF5 data (e.g. 2D/3D)

• two different technologies– Streaming Virtual File Driver (I/O rerouted over network stream)

– XML-wrapper (HDF5 calls wrapped and translated into XML)


Remote Steering

Remote Viz data

Remote Viz data

XML HTTP

HDF5

Amira

Any Viz Client


Remote Steering

• Stream parameters from Cactus simulation to remote client, which changes parameters (GUI, command line, viz tool), and streams them back to Cactus where they change the state of the simulation.

• Cactus has a special STEERABLE tag for parameters, indicating it makes sense to change them during a simulation, and there is support for them to be changed.

• Example: IO parameters, frequency, fields

• Current protocols:– XML (HDF5) to standalone GUI

– HDF5 to viz tools (Amira, Open DX, LCA Vision, etc)

– HTTP to Web browser (HTML forms)


Remote Offline Visualization

Viz Client (Amira)

HDF5 VFD

DataGrid (Globus)

DPSS FTP HTTP

VisualizationClient

DPSS Server

FTP Server

Web Server Remote

Data Server

Downsampling, hyperslabs

2 TByte at NCSA

Berlin

??


Metacomputing: harnessing power when and where it is needed

• Einstein equations typical of apps that require extreme memory, speed

• Largest supercomputers too small!

• Networks very fast!– vBNS, etc in US

– DFN Gigabit testbed: 622 Mbits Potsdam-Berlin-Garching, connect multiple supercomputers

– International gigabit networking possible

– Connect workstations to make supercomputer

• Acquire resources dynamically during simulation!– AMR, analysis, etc...

• Seamless computing and visualization from anywhere

• Many metacomputing experiments in progress– Current ANL/SDSC/NCSA/NERSC/… experiment in progress...


Metacomputing the Einstein Equations:Connecting T3E’s in Berlin, Garching, San Diego

Want to migrate this technology to the generic user...


Grand Picture

Remote steering and monitoring

from airport

Origin: NCSA

Remote Viz in St Louis

T3E: Garching

Simulations launched from Cactus PortalGrid enabled

Cactus runs on distributed machines

Remote Viz and steering from Berlin

Viz of data from previous simulations in SF café

DataGrid/DPSSDownsampling

Globus

http

HDF5

IsoSurfaces


The Future

• Gravitational wave astronomy almost here: must be able to solve Einstein’s equations in detail to understand the new observations

• New Codes, strong collaborations, bigger computers, new formulations of EE’s: together enabling much new progress.

• Cactus Computational Toolkit developed orignally for Einstein’s equations, available now for many applications (NOT an astrophysics code!)– Useful as a parallel toolkit for many applications, provides portability from laptop

to many parallel architectures (e.g. cluster of iPaqs!)

– Many advanced collaborative tools, portal for code compostion, resource selection, computational steering, remote viz under development

• Advanced Grid-based metacomputing tools are maturing...


Further details...• Cactus

– http://www.cactuscode.org

– http://www.computer.org/computer/articles/einstein_1299_1.htm

• Movies, research overview (needs major updating)– http://jean-luc.ncsa.uiuc.edu

• Simulation Collaboratory/Portal Work: – http://wugrav.wustl.edu/ASC/mainFrame.html

• Remote Steering, high speed networking– http://www.zib.de/Visual/projects/TIKSL/

– http://jean-luc.ncsa.uiuc.edu/Projects/Gigabit/

• EU Astrophysics Network– http://www.aei-potsdam.mpg.de/research/astro/eu_network/index.html

Download - Albert-Einstein-Institut Cactus: Developing Parallel Computational Tools to Study Black Hole, Neutron Star (or Airplane...) Collisions

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