Download - Ahmed Supplementary Figure 1
![Page 1: Ahmed Supplementary Figure 1](https://reader030.vdocuments.us/reader030/viewer/2022032612/56813428550346895d9b1531/html5/thumbnails/1.jpg)
a b
c
Ahmed Supplementary Figure 1
![Page 2: Ahmed Supplementary Figure 1](https://reader030.vdocuments.us/reader030/viewer/2022032612/56813428550346895d9b1531/html5/thumbnails/2.jpg)
ba
CGGC
CHGGHC
Ahmed Supplementary Figure 2
c
d
Methylation difference
-log(
p-va
lue)
![Page 3: Ahmed Supplementary Figure 1](https://reader030.vdocuments.us/reader030/viewer/2022032612/56813428550346895d9b1531/html5/thumbnails/3.jpg)
Ahmed Supplementary Figure 3
ddc
a
rdd
met1
b
c
3’ flankTE sequence5’ flank
3’ flankTE sequence5’ flank
3’ flankTE sequence5’ flank
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Ahmed Supplementary Figure 4
5’ flankTE start TE end
3’ flankTE sequence
5’ flankTE start TE end
3’ flankTE sequence
5’ flankTE start TE end
3’ flankTE sequence
CHH
CG
CHG
![Page 5: Ahmed Supplementary Figure 1](https://reader030.vdocuments.us/reader030/viewer/2022032612/56813428550346895d9b1531/html5/thumbnails/5.jpg)
a b
dc
e f k l
ji
g h
Ahmed Supplementary Figure 5
3’ flankTE5’ flank TE 5’ flank TE 3’ flankTE
3’ flankTE3’ flankTE5’ flank TE
5’ flank TE 5’ flank TE 3’ flankTE 3’ flankTE
5’ flank TE
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Ahmed Supplementary Figure 6
CG = 100%CHG = 100%CHH = 51%Pattern Assigned = MMM (Methylated CG, Methylated CHG, Methylated CHH)
Cm = methyl-cytosine
N = # cytosines in context having sufficient sequencing depths
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x
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xxx x xxx x