do metacommunity theories explain spatial variation in fish … · 2019. 4. 17. · disturbance...
TRANSCRIPT
Freshwater Biology 201964367ndash379 wileyonlinelibrarycomjournalfwb emsp|emsp367copy 2018 John Wiley amp Sons Ltd
Received14June2018emsp |emsp Revised15October2018emsp |emsp Accepted31October2018DOI101111fwb13229
O R I G I N A L A R T I C L E
Do metacommunity theories explain spatial variation in fish assemblage structure in a pristine tropical river
Edwin O Loacutepez-Delgado12 emsp|emspKirk O Winemiller1emsp|emspFrancisco A Villa-Navarro2
1DepartmentofWildlifeandFisheriesSciencesTexasAampMUniversityCollegeStationTexas2GrupodeInvestigacioacutenenZoologiacuteaFacultaddeCienciasUniversidaddelTolimaIbagueacuteTolimaColombia
CorrespondenceEdwinOLoacutepez-DelgadoDepartmentofWildlifeandFisheriesSciencesTexasAampMUniversityCollegeStationTXEmaileolopezdtamuedu
Funding informationWorldWildlifeFoundation(WWF)ColombiaFundacioacutenOmachaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtandUniversidaddelTolima
Abstract1 UnderstandingprocessesdrivingpatternsofspeciesdistributionanddiversityisoneofthemainobjectivesofcommunityecologyTherehasbeenagrowingrec-ognitionthat localenvironmentalconditionsarenottheonlyfactorstructuringecologicalcommunitiesand that large-scalespatialvariationanddispersalalsohavemajorinfluences
2 TheaimofourstudywastoevaluatespatialvariationinfishassemblagestructurealongthelongitudinalfluvialgradientoftheBitaRiveranearlypristinetributaryoftheOrinocoRiverintheLlanosregionofColombiaStandardisedsurveyscon-ductedat34sitesthroughoutthebasinduringthelowwaterperiodinJanuaryandMarch2016yielded25928fishspecimensrepresenting201speciesTwenty-sevenenvironmentalvariableswererecordedateachsiteandasymmetriceigen-vectormapswereusedtomodelspatialvariables
3 Tounderstandspatialvariation in local fishassemblagesandtheir relationshipswiththeenvironmentalandspatialvariablestwoapproacheswereusedFirstweappliedtheelementsofmetacommunitystructureframeworkfollowedbyavari-ation decomposition analysis that allowed themetacommunity to be classifiedaccordingtosixalternativepatternsofspeciesdistributionandfouralternativemetacommunityparadigms
4 Wehypothesisedthatatabasinscaleamajorfractionofvariationinstructureisexplainedbyapureenvironmentaleffectandmetacommunitypatterns shouldrevealaClementsiandistributionAtamoreregionalscale(localitieswithinariversection)assemblagesinupstreamanddownstreamregionsmayreflectdifferentmetacommunityprocessesBecauseheadwaterstreamsare isolatedwithin theriver network they should receive fewermigrants andmay have local assem-blagesstronglyinfluencedbylocalenvironmentalconditionsandspeciessortingwith one of three possible distributional patterns (ClementsianGleasonian orevenlyspaced)wouldbeobservedConverselydownstreamsitescloser to therivermouthshouldbeinfluencedbyhighdispersalresultinginagreaterimpor-tanceofspatialfactorsandthemasseffectwithmetacommunitypatternsnestedalongthelongitudinalgradient
5 Our results suggest that the fish metacommunity in the Bita River exhibits aClementsiandistributionimplyingthatspeciesrespondtotheenvironmentalandfluvial gradient as groups along the longitudinal gradient These replacements
368emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
1emsp |emspINTRODUC TION
Thespatialdistributionsof speciesand resultantdiversityof localassemblages are affected by multiple factors operating at differ-ent temporal and spatial scales (Pease Gonzaacutelez-Diacuteaz Rodiles-Hernaacutendez ampWinemiller 2012 Presley Higgins ampWillig 2010)andunderstandinghowthese factors influencepatternshasbeenthe main objective in community ecology (Landeiro MagnussonMeloEspiacuterito-SantoampBini2011)Streamecologistshavebeenpar-ticularly active in research addressing relationships of assemblagepatterns with abiotic (Mouillot Dumay amp Tomasini 2007) biotic(MacarthurampLevins1967)spatial(Peres-NetoampLegendre2010)and stochastic influences (Chase Kraft Smith Vellend amp Inouye2011)Thesefactorscanactindependentlysequentiallyorsimulta-neouslyandofteninteract(CarvalhoampTejerina-Garro2015)
Until recentlymost field studieshave focusedonassociationsbetweenlocalspeciesassemblagesandlocalenvironmentalfactorsDuringthepastdecadetherehasbeenarapidincreaseinresearchshowinghow local communities are influencedbydispersal of or-ganismsacrossvarious spatial scalesand involvingecologicalpro-cesses suchashabitat selectionand responses todisturbancesorcompetition (Erős 2017 Erős Takaacutecs Specziaacuter Schmera amp Saacutely2017LeiboldampMikkelson2002Leiboldetal2004Presleyetal2010)
Metacommunitytheoryexploreshowlocalinteractionsandre-gionalprocesses(dispersalsub-populationextirpation)shapecom-munity structureThewordmetacommunity isused todescribeanetworkof localcommunitiesof interactingpopulations linkedviadispersal Themetacommunityparadigmhas stimulated investiga-tiononhowpopulations interactatregionalaswellas localscales(LogueMouquetPeterampHillebrand2011)At least fourmodelsofmetacommunitydynamicshavebeenproposedeachdefinedbytherelativeinfluencesofdispersalenvironmentalfilteringhabitatselection habitat disturbance biotic interactions and stochasticfactors(Leiboldetal2004)
Three statistical approaches have been developed to studymetacommunitiesTheseareelementsofmetacommunitystructure(EMS)variationpartitioningandzero-summultinomialdistribution(Logueetal2011MonteiroPaivaampPeres-Neto2017)Thecur-rentstudyadoptsthefirsttwoapproachestotestmetacommunitytheoriesbyanalysingspatialvariationinfishassemblagesinapris-tineneotropicalriver
TheEMSmethod(LeiboldampMikkelson2002)analysesspeciesdistributionpatternsalongenvironmentalgradientstorevealmul-tipleEMSEMSusesanorderedsites-by-speciesincidencematrixby reciprocal averaging (RA) to evaluate assemblage coherenceturnover and boundary clumping The method can distinguishamongsixpossiblepatternsofspeciesdistributioncheckerboard(nonrandom patterns of species co-occurrence) Clementsian(clumps of co-occurring species distributed along spatial gradi-ents)Gleasonian(independentspeciesdistributionsalongspatialgradients) evenly spaced (hyperdispersed species distributions)nestedsubsetsandrandom(LeiboldampMikkelson2002Presleyetal 2010)Because the focal unitsof analysis are speciesdis-tributions rather than assemblage structure among sites thisapproach allows testingof hypotheses about competitive exclu-sion(negativecoherencendashcheckerboarddistribution)randomas-semblies (non-significantcoherence)andenvironmental filtering(positive coherencendashClementsian and Gleasonian distributions)(Meynardetal2013)
Variation partitioning another commonly used method incommunity ecologywasdesigned to reveal potentialmechanismsresponsibleforspatialvariation inassemblagecomposition(Peres-Neto LegendreDrayampBorcard 2006) This approach integratesenvironmentalvariationandspatialprocessesandfacilitates infer-encesaboutthelikelihoodthatoneormoreofthefourmetacom-munityprocesses(speciessortingmasseffectpatchdynamicsnullmodel)accountforobservedassemblagepatterns(Cottenie2005)
Spatial configurations such as dendritic structures of rivernetworks also affect fish assemblage structure (Vitorino-Juacutenior
were associatedwith environmental heterogeneity especially regarding habitatfeaturesSimilarlythevariationpartitioninganalysisshowedthatthepureenvi-ronmentalcomponentwashigherthanthepurespatialcomponentwhichiscon-sistentwithspeciessorting
6 In this paperwe demonstrated that variation partitioning andmetacommunitystructureanalysesprovidedcomplementaryfindingstoinferprocessesstructur-ingfishassemblagesintheBitaRiverBothapproachesidentifiedspeciessortingastheprincipalstructuringprocessesinthissystemThereforestrategiestopre-servefishdiversityinthissystemmustemphasisemaintenanceofhabitathetero-geneityandconnectivity
K E Y W O R D S
Clementsiandistributionenvironmentalfilteringfluvialgradientspeciessorting
emspensp emsp | emsp369LOacutePEZ- DELGADO Et AL
Fernandes Agostinho amp Pelicice 2016) Brown and Swan (2010)foundthatprocessesstructuringaquaticcommunitiesdifferedde-pendingonthenetworklocation(headwatersstreamsversusmainstem)Headwaters streamsare relatively isolatedwithin rivernet-workspossesshighhabitatheterogeneityandtendtohavestrongdisturbance regimes Patch dynamics may dominate metacom-munity dynamics under these conditions (Winemiller Flecker ampHoeinghaus2010)Converselyhabitatsinlowerreachesaremuchless isolated with greater potential for dispersal conditions thatshould facilitate species sorting and themass effect Communitystructure along river longitudinal gradients also couldbe affectedbytheunidirectionalflowofwaterDatryetal(2016)inferredthatspeciesdiversityincreasesfromupstreamtodownstreamduetothecombinedeffectofheadwaterisolationandwaterflowlimitingup-streamdispersal
Relatively few investigations have examined metacommunitypatternsalonglongitudinalfluvialgradients(AlmeidaampCetra2016Carvajal-Quintero etal 2015 Datry etal 2016 Vitorino-Juacutenioretal2016)andevenlessresearchhasbeenconductedinrelativelypristine riverswith catchments lacking significanthuman impactsKnowledge gained fromunperturbed systems enables predictionsabout future impacts to biodiversity and can help to guide con-servationandrestorationeffortsforriversthathavealreadybeendegraded
Weinvestigatedspatialvariationinfishassemblagestructurealong the longitudinal fluvialgradientof theBitaRiver anearlypristine tributary of the Orinoco River in the Llanos region ofColombiaWeanalysedfishspeciesdistributionsacrossthelongi-tudinalgradientinanefforttorevealrelativeinfluencesofabioticenvironmental and spatial factors and to infermetacommunitymodelsthatmayaccountforpatternsWepredictedthatatthebasin-scaledispersalratesaresufficiently lowtoallowlocalas-semblages to track spatial environmental variation (eg speciessorting)withamajorfractionofvariationinstructureexplainedbyapureenvironmentaleffect(HeinoMeloampBini2015HeinoMelo Siqueira etal 2015) Given that environmental condi-tions should have greater variation over broader spatial scalesmetacommunity patterns should reveal high turnover and fairlydiscrete local assemblageswithaClementsiandistributionAt amoreregionalscale(localitieswithinariversection)assemblagesinupstreamanddownstreamregionsmayreflectdifferentmeta-communityprocessesBecauseheadwaterstreamsarerelativelyisolatedwithintherivernetwork theyshouldreceivefewermi-grantsandmayhavelocalassemblagesstronglyinfluencedbylocalenvironmental conditions and species sorting Metacommunitypatterns of headwaters should reveal high turnover with threepossible distributional patterns Clementsian Gleasonian orevenlyspacedConversely sites locateddownstreamandclosertotherivermouthshouldbeinfluencedbyhighdispersalresult-inginagreaterimportanceofspatialfactorsandthemasseffectIn the downstream section in-channel environmental variationwillbelowerandmetacommunitypatternsmaybenestedalongthelongitudinalgradient
2emsp |emspMETHODS
21emsp|emspStudy area
TheBitaRiverBasinislocatedintheeasternplainsoftheColombianLlanos in theVichadadepartmentdraininganareaof812312haflowingeastroughly700kmtotheOrinocoRiverAsinmostnaturaldrainagesystemsstreamenvironmentalcharacteristics intheBitaBasinvaryalongthelongitudinalgradientMostheadwaterstreamsbeginatanelevationof300mabovesealevelThemiddleandlowersectionsare characterisedbyabroad sinuouschannel and flood-plainswithnumerouslagoonsandseasonallyfloodedforestsandsa-vannasTheaverageelevationalgradientislow(0357mkm)withtheriverenteringtheOrinocoRiveratanelevationof50mabovesea level near the municipality of Puerto Carrentildeo Riparian veg-etationiscomprisedofdensegalleryforestsdominatedbyCaraipa llanorum (Calophyllaceae) Astrocaryum jauari (Arecaceae) andParahancornia oblonga (Apocynaceae) and savannasdominatedbyAxonopus ancepsPanicum cayennense (Poaceae)Bulbostylis capilla-risCyperus haspanRhynchospora cephalotes(Cyperaceae)Caladium macrotites (Araceae) and C llanorum (Calophyllaceae) (Trujillo ampLasso2017)Themainriverandstreamscontainmultiplehabitatsthatvarymainly insubstratecompositionriparianvegetationanddepthDuringMayndashNovembertheriverfloodsadjacentareascre-atingcomplexanddiversehabitatsAverageairtemperatureintheregion is27degCandaverageannualprecipitation is2300mmwithmostrainfallfromMaytoAugust(TrujilloampLasso2017)
Twofieldexpeditionseachofwhich lasted30dayswereper-formedduringJanuaryandMarch2016whenlow-waterconditionsfacilitateefficientcaptureoffishesandrelationshipsbetweenfishassemblagestructureandhabitatshouldbestrongest(Peaseetal2012)Weselected34surveysitesdistributedalongtheentirebasin(E1uppermosttoE34lowest)followingtheriverrsquoslongitudinalgra-dient(SupportingInformationTableS1)Thebasinwasdividedintofoursections(highmidndashhighmidndashlowlow)usingthelineardistanceofthebasin(265km)divideditbythenumberofsections(four)Thisvalue(665km)wasusedtodefinethedistancebetweeneachsec-tionalongthelongitudinalgradient(Figure1)
22emsp|emspFish surveys
At each survey sitewe selected a 200-m reach encompassing allapparentmacrohabitatstocollectfishesanddataforlocalenviron-mental variables Fishes were collected using a seine (10times15m3-mmmesh)andtwogillnets(10times2m100-mmmesh)Withineachstudyreachsixseinehaulsof20mwereperformedandthegillnetwasdeployed for2hrAfter fisheswere removed fromnets theywere anaesthetised according to an approved TexasAampMuniver-sityanimaluseprotocol (IACUC2015-0360)by immersion in tric-aine methane sulfonate (MS-222) and euthanised in an overdoseofMS-222Specimenswere fixed in10formalin transported tothelaboratoryandtransferredto70ethanolforpreservationAllspecimenswereidentifiedcataloguedanddepositedinthevoucher
370emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
collectionsoftheUniversidaddelTolimaandInstitutovonHumboldtinColombia
23emsp|emspEnvironmental variables
Environmentalvariablesweredividedintosixcategorieswaterpa-rameters substrate instream cover channelmorphology local ri-parianbufferandlandscapevariablesfollowingPeaseetal(2012)(SupportingInformationTableS2)Priortofishsamplingwaterqual-ity parameters such as pH conductivity (μS) water temperature(degC)dissolvedoxygen(mgL)andtotalsolidsweremeasuredateachsurveysiteusingamultiparameterwaterqualitymeter (YSImodel85) To characterise substrate and instreamcover thepercentageof cobble (diameter6ndash25cm) sand (006ndash2mm)mud (lt006mm)filamentousalgaelargewoodydebris(gt50cm)smallwoodydebris(lt50cm)submergedrootsoverhangingterrestrialmaterialandleaflitterwerevisuallyestimatedalongthe200-mreachVariablessuchaswidthofriparianbuffer(m)areaoftheriparianforest(ha)andlandscape(presenceofroadscropsdistancetotheOrinocoRiverandaltitude)weremeasuredbygeoreferencedsatelliteimagesusing
ArcMap (Version1031) inacircularbufferof1kmStreamorderwascalculatedusingthefunctionstreamorderinArcMap(Version1031)methodStrahlerrsquosclassification
24emsp|emspData analysis
Analyses were performed at basin (number of sites=34) and re-gional scales Regional-scale datasets were grouped according tofoursectionsalongthelongitudinalfluvialgradient(highmidndashhighmidndashlow low)Thisapproachaimed toexplore thepossibility thatenvironmental or spatial variationwithin river sections influencesassemblage patterns according tometacommunity processes thatmay differ among sections Using the method of Dufrene andLegendre (1997) we calculated indicator values for species mostcommonwithinagivenriversectionThismethodisbasedonspe-ciesabundance(specificity)andfrequency(fidelity)atsurveysitesValuesfromthismethodrangefrom0to1with1beingaperfectindicator of a river section Significance of indicator values wasevaluatedusingthedifferencebetweentheobservedvalueandthemeanofvaluesobtainedfrom1000randompermutationsSpecies
F IGURE 1 emspMapoftheBitaRiverBasinshowingthefoursectionsandthe34surveysites
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Casanare River
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oco
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oco
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0 40 8020 Kilometers
emspensp emsp | emsp371LOacutePEZ- DELGADO Et AL
indicator analysiswas performed using the function Indval of thepackagelabdsv(Roberts2007)intheRstatisticallanguage(Version341)(RCoreTeam2017)
25emsp|emspSpatial variables
Becausefishdispersalinriversisdifficulttoestimateweusedspa-tial predictors as proxies for dispersal potential Spatial eigenvec-torswereusedaspredictors to control for spatial autocorrelationandestimate the influenceof spatialdistanceon speciesdistribu-tionsandpatternsofassemblagestructure(Peres-NetoampLegendre2010) Spatial patternsweremodelled through asymmetric eigen-vectormaps (AEM)anapproachproposedbyBlanchetLegendreandBorcard(2008b)Thismethodtakesintoaccountthedirectionalaspectofinter-sitedistancesofsystemssuchasrivernetworks(egwaterflowrelativeposition)a limitationofmethodssuchasprin-cipal coordinates of neighbour matrices and Moranrsquos eigenvectormaps(BlanchetLegendreMarangerMontiampPepin2011SharmaLegendreDeCaacuteceresampBoisclair2011)
To perform theAEMwe used the distribution of sites acrossthebasintoconstructaconnectiondiagramthatlinkssitestooneanotheraccording topathwayswithin the rivernetwork (Figure1SupportingInformationTableS3)followingtheflowdirectionfromupstreamtodownstreamUsingtheconnectiondiagramasites-by-edgesmatrixwasconstructedandthismatrixwasusedtocalculateasymmetricalspatialeigenfunctionsthroughsingularvaluedecom-positionwhichwereused laterasspatialdescriptorsAEMeigen-functionswerecalculatedusingthefunctionaemfromthepackageadespatial inR (Version341) (Drayetal2017)Toobtainanad-ditional spatial descriptorwemeasured thewatercourse distanceas thedistance fromeachpoint to the rivermouthalong thewa-tercourseusinggeoreferencedsatellite images inArcMap(Version1031)Thisvariableismorerelevanttofishdispersalthanstraight-linedistancethatincludesoverlandsegments(albeitsuchdispersalroutesarepossibleduringtheannualfloodpulse)
26emsp|emspElements of the metacommunity structure
Usingthesites-by-species incidencematrix (excludingrarespeciesthatoccurredatonlyonesite)asinputforRAEMSwereanalysedbasedonspeciesscoresonthefirsttwoaxesToevaluatepatternswithrespecttosixidealiseddistributionalpatterns(1)checkerboard(Diamond1975) (2)nestedsubsets (PattersonampAtmar1986) (3)Clementsian (Clements 1916) (4) Gleasonian (Gleason 1926) (5)evenlyspaced(Tilman1982)and(6)random(Simberloff1983)wefollowedtheframeworkproposedbyLeiboldandMikkelon(2002)andPresleyetal(2010)
Coherencewasassessedbycalculatingthenumberofgapsinspeciesrange(observedabsences)fromtheorderedmatrixfromRAStatisticalsignificanceofcoherencewasevaluatedusingthez-score test comparing observed absenceswith those expectedbasedon1000randomisedsimulationsWheneverobservedab-sencesaregreaterthanexpected(negativecoherence)thereisa
checkerboardpatternConversely ifobservedabsencesare lessthanexpectedunderthenullmodel(positivecoherence)theanal-ysis tests forevidenceofspeciesturnoverandboundaryclump-ing No significant difference between observed and expectedabsences indicates randomdistributions (no coherence) (LeiboldampMikkelson2002)
TurnoverwasevaluatedbycalculatingthenumberofspeciesreplacementsbetweensitesWeusedaz-score test tocompareobserved species replacements with the mean for species re-placements obtained from 1000 null simulations Significantlyfewerobservedreplacementsare indicativeof lowturnoveranddistributionsthatarenestedsubsetswhereasmoreobservedre-placementsindicatehighturnoverFinallyboundaryclumpingwasevaluatedusingMorisitarsquosindexforwhichavalueofoneindicatesthatboundariesarenotclumpedvalueslt1indicateclumpingandlt1indicateshyperdispersionStatisticalsignificanceofMorisitarsquosindexwasdeterminedusingtheχ2 testMore informationaboutinference of idealised patterns can be found in fig1 of Presleyetal(2010)
Weappliedafixedproportionalnullmodel(ier1 null model in MetacommunityfunctioninR)totestsignificanceofcoherenceandturnoverThisnullmodelmaintainsspeciesrichnessofeachsamplingsite but fills species ranges based on theirmarginal probabilitiesRandomsimulatedmatriceswerecalculatedusing1000simulations(Dallas2014)EMSwereassessedusingtheMetacommunity func-tionoftheMetacompackage(Dallas2014)inR
27emsp|emspVariation partitioning
Weusedvariationpartitioninganalysis(Peres-Netoetal2006)asanadditionalmeanstoidentifymetacommunitytypesandtoassesstherelativecontributionofenvironmentalandspatialpredictorsonfishdistributionsatbasinandregionalscalesThismethodallowedus to determine the contribution of environmental conditions in-dependentofspaceandvice versacontrollingfortypeIerrorasaproductofspatialautocorrelationintheenvironmentalcomponent(Peres-NetoampLegendre2010)Type I errormay lead to spuriousconclusions generating significant speciesndashenvironment relation-ships thatareartefactsPartitioninganalysiswasconductedusingthe adjusted R-squared in redundancy analysis on the Hellinger-transformedspecies-by-sitesabundancematrixandtwosetsofpre-dictorsenvironment[E]andspace[S]
To create each set of predictors firstwe reduced the num-berofvariablesineachmatrixbecausetheyreducethestatisticalpowerofthetesttoidentifyuniqueandsignificantenvironmentalandspatialcontributions(Peres-NetoampLegendre2010)Weper-formedavariableselectionforeachsetofpredictorsto identifysignificantvariables(plt05)associatedwiththespecies-by-sitesabundancematrixForthe[E]matrixwetransformedtheenviron-mentalvariablesduetononhomogeneousunitsandverifiedthatthedistributionwasnormalThosevariablesexpressedaspropor-tionsweretransformedtothearcsineoftheirsquarerootThere-mainingvariableswerelog(x+1)transformedwiththeexception
372emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
ofordinal andcategoricaldata forwhichno transformationwasdone Data for all variables were standardised and centred bycalculating z-scores (mean=0 standard deviation=1) (BorcardGilletampLegendre2011FalkeampFausch2010)Thefunctionfor-wardselfromtheRlibraryadespatial(Drayetal2017)wasusedtoperformvariableselectionusing999permutationswithasig-nificance level of p=05Selectedvariablescomprisedtheenvi-ronmentalmatrix[E]usedforthepartitionanalysis
Spatial predictors from the AEM analysis and inter-site dis-tancedataweretestedforinclusioninthespatialmatrix[S]usingtheforwardselfunctionoftheRlibraryadespatialusingthesameapproachasdescribedforthe[E]matrixSelectedvariableswereincludedinthe[S]matrixforthepartitioninganalysisFinallywithourthreedatasets(Hellinger-transformedsites-by-speciesmatrix[E]and [S])weapplied thevarpart functionof thevegan libraryin R to perform variation partitioning analysis as proposed byBlanchetLegendreandBorcard(2008a)andBorcardetal(2011)
Thesignificancelevelsofthecomponentsproducedbythevari-ation partitioning were used to classify the fish metacommunityaccording to one of the four metacommunity paradigms speciessorting mass effect neutral model and patch dynamics (Leiboldetal2004)TochoosetheproperparadigmweappliedthedecisiontreeproposedbyCottenie(2005)
28emsp|emspDrivers of metacommunity structure
We used two approaches to identify the underlying environmen-talandspatialfactorsthatcorrelatewithobservedpatterns inthemetacommunityorganisationat thebasinandregional levelFirstwecalculatedSpearman-rankcorrelationsbetweenthetwodomi-nantaxesextractedfromtheRAused in theEMSframeworkandeachvariablefromthesetofenvironmentalandspatialpredictorsSecond a variable selection procedure was performed for eachgroup (environmentalandspatial)usingthe forwardsel functionoftheRlibraryadespatialCorrelationswerecalculatedusingthefunc-tioncortestofthestatslibraryinR
3emsp |emspRESULTS
High and midndashhigh sections were characterised by higher valuesofdissolvedoxygenelevationdistance fromthemainsourcesa-vannaareaflowandpercentagesofgrassesandfilamentousalgae(Supporting Information Table S2) Channel width water tem-perature and total solids tended tobe lower atupper-basin sitesSubstratumandinstreamcoverwereheterogeneouswithinallfoursectionsSiteslocatedinthelowersectionstendedtohavemoreex-tensiveriparianforestmorelagoonsinadjacentfloodplainswiderchannelsandlowerflowvelocity(SupportingInformationTableS2)
A total of 25928 fish specimens representing 201 species 39familiesand10orderswerecollectedduringthestudySixtyspecieswerecollectedinthehighsection148inthemidndashhigh142inthemidndashlowand67inthelowsectionAveragenumberofspecimenspersite
was762andspeciesrichnessvariedfrom4to55ThemostabundantspecieswereAmazonprattus scintilla(Engraulidae)andtwospeciesofthegenusHemigrammus(Characidae)H elegans and H geisleriThesethreespeciesrepresentednearly30ofthecollectedfishspecimens(Supporting Information Table S4) Fifty-one rare species were col-lectedatsinglesitesSeveralspecieswereidentifiedasindicatorsforthe low (12spp)andhigh (sixspp) sectionsandfewornonewereidentifiedforthemidndashhigh(onesp)andlow(0sp)sections(Table1)
31emsp|emspElements of metacommunity structure
Atthebasinscale(34sites)theEMSrevealedpositivecoherencewithaClementsiandistributionalongbothof thedominantaxesmodel-ling gradientsof fish assemblage structure (RA1andRA2) (Table2Figure2)Thusatabroadspatialscalespeciesseemtorespondasgroupstoenvironmentalfactorsleadingtorelativelydiscreteassem-blagesalongthelongitudinalgradientTheClementsianpatterniden-tified forRA1waspositively correlatedwithchannelwidth streamorderandspatialpredictors(AEM21AEM25)andnegativelycorre-latedwithvariablesassociatedtosubstrateinstreamcoverandlocalriparianvegetation(Table3)ForRA2onlythespatialpredictorAEM1(positive)andflow(negative)werecorrelatedwithsitescores(Table3)
Metacommunitystructurewasanalysedforsiteswithineachof the foursectionsalongthe longitudinal fluvialgradient (highmidndashhighmidndashlowandlow)Assemblagesinthehighandlowsec-tionshadnegativecoherenceandarandompatternforbothRAaxes in thehighsectionandRA1 in the lowsectionRA2 in the
TABLE 1emspSummaryoftheindicatorspeciesanalysisforeachsectionintheBitaBasin
Species Section Indicator value
Hemigrammus schmardae High 059
Parotocinclus eppleyi High 040
Ammocryptocharax elegans High 040
Farlowella vittata High 038
Mastiglanis asopos High 037
Phenacorhamdia anisura High 035
Steindachnerina argentea Midndashhigh 048
Nannostomus unifasciatus Low 089
Microphilypnus ternetzi Low 084
Hemigrammus elegans Low 083
Apistogramma minima Low 066
Brittanichthyssp Low 061
Curimatopsis evelynae Low 060
Hemigrammus analis Low 060
Acaronia vultuosa Low 059
Hemigrammus rhodostomus Low 058
Ochmacanthus alternus Low 058
Acestrorhynchus minimus Low 057
Hemigrammus barrigonae Low 033
Onlyspecieswithstatisticallysignificantvalues(plt005)arelisted
emspensp emsp | emsp373LOacutePEZ- DELGADO Et AL
TABLE 2 emspResultsofEMSanalysisoffishmetacommunitystructureattheleveloftheentireBitaBasinandattheregionallevelforhighmidndashhighmidndashlowandlowsectionsoftheriver
Axis of variation Basin High Midndashhigh Midndashlow Low
Species 145 37 84 85 55
Sites 34 5 12 14 3
Primaryaxis
Coherence
Observedabsences 2506 55 318 453 14
Expectedabsences 3032 41 445 554 14
p-value lt0001 0127 lt0001 0001 09
Turnover
Observedreplacements 347752 543 20498 27534 630
Expectedreplacements 186586 624 14397 20631 621
p-value lt0001 015 lt0001 lt0001 089
Clumping
Morisitarsquosindex 158 102 137 114 1
p-value lt0001 017 lt0001 lt0001 gt0999
Best-fitpatterns Clementsian Random Clementsian Clementsian Random
Secondaryaxis
Coherence
Observedabsences 2706 40 383 541 22
Expectedabsences 3030 4032 447 557 13
p-value 0001 096 003 064 0007
Turnover
Observedreplacements 366210 597 19630 14070 377
Expectedreplacements 186480 622 14397 20697 541
p-value lt0001 065 lt0001 lt0001 0004
Clumping
Morisitarsquosindex 155 136 137 117 1
p-value lt0001 0004 lt0001 lt0001 gt0999
Best-fitpatterns Clementsian Random Clementsian Random Nesteddistribution
Statisticallysignificantvalues(plt005)areshowninboldtype
F IGURE 2 emspSpeciesdistributionsamong34sitesintheBitaBasinorderedaccordingtoscoresonthefirstaxisofthereciprocalaveragingrevealingaClementsiangradientSitesareinrowsspeciesareincolumns
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AbsencePresence
374emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
lowsectionrevealedanesteddistributionNosignificantcorrela-tionsbetweenassemblagestructureandenvironmentalorspatialfactorswerefoundforthehighandlowsections(Tables2and3Figure3)
Midndashhigh and midndashlow sections displayed Clementsian pat-terns of assemblage structure for both the first and second RAaxes For the midndashhigh section no significant correlations wereobtained between RA1 and environmental or spatial variableshoweverRA2waspositivelycorrelatedwiththepresenceofroadsandthespatialpredictorAEM1(Tables2and3Figure3)ForthemidndashlowsectionRA1waspositivelycorrelatedwithsubstrateandinstreamcoverandRA2withthespatialpredictorAEM1(Tables2and3Figure3)
32emsp|emspVariation partitioning analysis
Atthebasinscaleallthecomponentsfromvariationpartitioning(ESE+SE|SS|E)explainedsignificant(plt05)variationinfishassem-blagestructuresupportingtheideathatmetacommunitydynamicsinfluencepatternsat that scale (Table4)Around19of the totalexplainedvariation (E+S)wasmodelledbythecombined influenceofenvironmentandspatialpredictors69byapureenvironmentalcomponent(E|S)and46byapurespatialcomponent(S|E)Eighty-onepercentofthevariationwasunexplainedEnvironmentalvaria-tionatthebasinscalewassignificantlyinfluencedbypercentageof
mudsubstratesmallwoodydebrisandwaterconductivity(Table4)Onlyfourof33spatialpredictorsweresignificant(AEM1AEM16AEM18AEM21Table4)
Attheregionalscalethenumberofsiteswithinthehighandlow sections was too small for statistical analysis and only themidndashhigh and midndashlow sections were analysed Only the envi-ronmental component (E) explained significant variation in fishassemblagestructurewithineachofthesesections(Table4)indi-catingthatitwasnotpossibletoinferanymetacommunitymodelIn themidndashhigh section a significant environmental componentinfluenced most strongly by percentage of mud substrate andsmallwoodydebrisexplained16ofassemblagevariationInthemidndashlow section 14of assemblage variationwas explainedbyan environmental componentwith conductivity andpercentageofsmallwoodydebrismostinfluential
33emsp|emspDrivers of fish community structure
The set of variables selected by variation partitioning includedmostof theones thathadhighestSpearman rankcorrelationsAtthe basin level environmental variables related to substrate andinstream coverwere identified by bothmethods (Tables3 and 4)EnvironmentalpredictorssuchaspercentagesofmudsubstrateandsmallwoodydebrisandthespatialpredictorAEM1weresignificantatbothbasinandregionalscales(Tables3and4)
TABLE 3emspSpearman-rankcorrelationsbetweenpredictorsandscoresobtainedfromthefirsttwoaxesfromthereciprocalaveragingordinationofthesites-by-speciesincidencematrixintheelementsofmetacommunitystructureframework
Variables
Basin Midndashhigh Midndashlow
r p r p r p
Primaryaxis
()Mud minus055 lt001 061 002
()Largewoodydebris minus048 lt001
()Smallwoodydebris minus048 lt001 055 004
()Submergedroots minus048 lt001 061 002
()Streamshadedbytreecanopy minus047 lt001 061 002
Width 037 003
Streamorder 052 lt001
AEM21 039 002
AEM25 039 002
Secondaryaxis
()Mud minus071 001
()Largewoodydebris minus066 002
()Smallwoodydebris minus075 lt001
()Streamshadedbytreecanopy minus075 lt001
Flow minus047 lt01
Neartoroads 066 002
AEM1 051 lt01 06 004 069 001
Onlystatisticallysignificantvalues(plt005)areshownNosignificantcorrelationswerefoundforhighandlowsectionsAEMasymmetriceigenvectormaps
emspensp emsp | emsp375LOacutePEZ- DELGADO Et AL
F IGURE 3 emspSpeciesdistributionswithinfourriversectionsorderedaccordingtoscoresonthefirstreciprocalaxis
High
E5
E2
E4
E3
E1
Species
Midminushigh
E16
E8
E7
E9
E14
E17
E10
E15
E12
E11
E13
E6
Species
Midminuslow
E30E20E24E18E26E27E31E25E21E23E22E29E28E19
Species
Low
E33
E34
E32
Species
Absence
Presence
Component
Bita basin Midndashhigh Midndashlow
AdjR2 p AdjR2 p AdjR2 p
E 014 0001 016 0007 014 0002
S 012 0001 000 05 000 056
E+S 019 0001 018 02 014 013
E|S 0069 0001 020 03 016 016
S|E 0046 0025 002 06 000 051
b 0075
R 081 082 086
Variablesselected Mud[E] Smallwoodydebris[E] Conductivity[E] AEM1[S] AEM16[S] AEM18[S] AEM21[S]
Mud[E] Smallwoodydebris[E]
Conductivity[E] Smallwoodydebris[E]
AEMasymmetriceigenvectormapsAdjR2adjustedR2forthepercentageofvariationEenviron-mentalvariationSspatialvariationE+STotalexplainedvariationE|SPureenvironmentalvaria-tion S|E Pure spatial variation b Variation shared by environmental and spatial factorsRUnexplainedvariation(residual)Significantvalues(plt005)areshowninbold
TABLE 4emspVariationpartitioninganalysisforfishassemblagesandselectedgroupsofenvironmentalandspatialvariablesatbasinandregionalscales
376emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
4emsp |emspDISCUSSION
In this study we applied complementary statistical analyses toinvestigate fish species distributions and variation in assemblagestructureacrossalongitudinalfluvialgradienttorevealtherelativeinfluenceoffactorsassociatedwithenvironmentalconditions(eghabitat features environmental filtering) and spatial relationshipsinfluencingdispersalResultsfromtheseanalysesprovidedabasistoinfertherelativeinfluenceofbiotic interactionsandstochasticprocessesincommunityassemblyattwospatialscalesOurresultssuggest that the fishmetacommunity in theBitaRiver exhibits aClementsiandistributionimplyingthatspeciesrespondtotheen-vironmental and fluvial gradient as groups with fairly consistentcompositions (Clements1916)Thispatternalso impliesapoten-tialeffectofenvironmentalfilteringatthescaleoftheentirebasinSimilarlythevariationpartitioninganalysisshowedthatthevaria-tion explainedby the pure environmental componentwas higherthanthepurespatialcomponentwhichalsoisconsistentwithspe-ciessortingSpeciessortingoccurswhenorganismsselecthabitatsthat convey relativelyhigh fitness andor avoidor areotherwiseeliminatedfromhabitatsthatreducetheirfitness(Soininen2014)Thesefindingssupportourpredictionthatatthebasinscaledis-persalratesarelowandassemblagestructureisstronglyinfluencedbyspeciessorting
Ourregional-scaleresultsalsorevealedaClementsiandistribu-tionoflocalassemblagecompositionThispatterncouldhavebeencausedbyspeciesresponsestospatialvariationofabioticandbioticenvironmentalfactorsSpearmancorrelationbetweenenvironmen-talvariablesandsitescoresongradientsofassemblagevariationin-dicatedthatstreamorderandchannelsizehadstrongassociationswithlocalassemblagestructureVariablesassociatedwithsubstratecomposition and instream cover also had significant associationsFishes in theBitaRiver apparently respond to theseenvironmen-talvariablesasrelativelyclumpedgroupsClementsianassemblagestructure has been found in plants (Meynard etal 2013 Willigetal2011)mammals(Loacutepez-GonzaacutelezPresleyLozanoStevensampHiggins 2012PresleyampWillig 2010) andvarious freshwateror-ganismsincludingplanktonmacroinvertebratesandfish(DallasampDrake2014Erősetal2017FernandesHenriques-SilvaPenhaZuanonampPeres-Neto2014TonkinStollJaumlhnigampHaase2016TorresampHiggins2016)
Weproposed that somemetacommunity processes and resul-tantpatternswouldnotbethesameattwodifferentspatialscalesofanalysisWefoundpositivecoherenceandturnoverinupstreamregionsandpositivecoherenceandnegativeturnoverwithnesteddistributionsindownstreamregionsThesepatternswerenotpre-dicteda prioriAttheregionalscaleaClementsiandistributionwasfoundonlyinthemidndashhighandmidndashlowsectionsofthebasinsug-gesting that species responded as groups to environmental filtersmore strongly in these middle sections of longitudinal gradientAssemblage coherence was non-significant (ie not statisticallydifferent from a random distribution) for the high and low sec-tionsoftheriverAccordingtoPresleyetal(2010)non-significant
coherence is not always an indicatorof randomstructuresDallasandDrake(2014)foundthatinmoststudiesinwhichrandompat-ternswerefoundsamplescontainedfewspeciesfewsitesorbothand therefore therewas not enough statistical power to test co-herenceusing randomisationprocedures Inourstudy therewerefewersurveysitesforthehighestandlowestsectionsoftheriverwhichmayaccountfornon-significantcoherenceinthosesectionsNonethelessFigure3revealsapatternofspeciesdistributionwithhigh turnover and boundary clumping in the high section such apatternislessdiscernibleforthelowsection
Inthelowsectionoftheriverdistributionpatternswerediffer-ent for the twoassemblageordinationaxesRandomdistributionswere inferredbasedon the firstordinationaxisandnesteddistri-butionswerefoundforthesecondaxisResultsofthesecondaxissupport our hypothesis that environmental gradients over smallerspatial scales in the low sectionmay promote nested distributionpatternsSitesinthissectionwerecharacterisedbysubstratescom-prised almost entirely of sandwith patches of leaf litter and lowvariation inwater physicochemistryDistribution patternsmay bemorelikelytobenestedwhensamplesizeissmallandenvironmen-talgradientsareshort(Tonkinetal2016)ConverselylargesamplesizesandlongenvironmentalgradientsmayincreasethelikelihoodoffindingClementsianandGleasonianpatterns
At the basin scale the total variation in assemblage structurecapturedbythemodel(19)wasdecomposedinto69purelyen-vironmental 75 shared by environmental and spatial and 46purelyspatialcomponents(eachfractionwithplt0001)Thepureenvironmental component was strongly associated with the per-centage of mud substrate small woody debris and conductivitySharedenvironmentalandspatialfactorsalsowereassociatedwiththepercentageofmudandconductivityThepure spatial compo-nentwas represented by eigenvectors fromAEM predictors thatare not easily interpretable because they integrate multiple spa-tial scales (Peres-Netoamp Legendre 2010)with small-scale spatialvariables tending tobeassociatedwithmasseffectdynamics andlarge-scalespatialvariablestendingtobeassociatedwithdispersallimitation (HeinoMeloampBini2015HeinoMeloSiqueiraetal2015) At the scale of the entire basin both processes probablyoccursimultaneously
Thepercentageofvariationexplainedbyourpartitioninganal-ysiswas low(19)acommonfinding incommunityecologystud-ies (Castillo-Escrivagrave etal 2016 Devercelli Scarabotti MayoraSchneider amp Giri 2016 Erős etal 2017 Legendre amp Legendre2012TerBraakampŠmilauer2012)Thelargeamountofunexplainedvariationcouldbeduetoseveralfactorssuchasfailuretoincludeother relevant environmental variables and spatial predictors orvariablesrelatedtootherprocessessuchasbiotic interactionsOfcoursetherealsocouldbealargeinfluenceofstochasticdynamicsSoininen(2016)reviewed322datasetsandfoundthatspatialpredic-torsobtainedfromspatialeigenvectoranalysisgenerallyexplainedasmall fractionof totalassemblagevariationwhichsuggests thatspatialpredictors fromAEMmayperformpoorly incapturingpat-ternsreflectingdispersaldynamicsMonteiroetal(2017)proposed
emspensp emsp | emsp377LOacutePEZ- DELGADO Et AL
theuseofpatchconnectivitymetricsaspredictorsofdispersaldy-namicsratherthanspatialeigenvectorsTheyfoundthatthepatchconnectivityframeworkincreasedtheamountofexplainedvariationbyasmuchas50
Becausebothpureenvironmentalandpurespatialcomponentswere statistically significant both species sortingandmasseffectdynamics could have influenced fish assemblage structure at thebasin scale (Cottenie 2005) However because the proportionexplained by the pure environmental fractionwas larger than thespatialfraction(69versus46)speciessortingwasprobablythemoreinfluentialcomponentstructuringfishassemblagesinthissys-temTheseresultsareinaccordancewithHeinoMeloampBini(2015)whofoundthatanintermediateamountofdispersalwasneededforthespeciessortingprocesssincespeciesneedtodispersefromoneplace toanother searching forsiteswith theappropriateenviron-mentalconditionstothrive
Soininen(2014)reviewed326investigationsthatusedvariationpartitioning analysis finding that environmental variables usuallyexplainedthemostvariationinassemblagecompositionandspeciessortingwasmostofteninferredSpeciessortingmaybethepreva-lentmetacommunitymodel for river and stream fish assemblages(Cottenie2005FalkeampFausch2010HeinoMeloampBini2015HeinoMeloSiqueiraetal2015)
At a smaller spatial scale we predicted that species sortingstrongly influencesassemblages inheadwaterswherehabitatsarerelativelyisolatedwithintherivernetworkwhereasassemblagesindownstreamreacheswouldhavegreaterdispersalandbemorein-fluencedbymasseffectdynamicsThesepredictionswerenotcon-firmedBasedonvariationpartitioninganalysisandthedecisiontreeofCottenie(2005)noevidencewasobtainedtosupportanyofthemetacommunity paradigmsproposedby Leibold etal (2004) Thevariation partitioning procedure could only be performed for themidndashhighandmidndashlowsectionsthathadsufficientlylargesamplesOnlytheenvironmentalfractionwassignificantandthisresultcanbepronetotypeIerror
Insummaryvariationpartitioningandmetacommunitystructureanalysesprovidedcomplementaryfindingstoinferprocessesstruc-turingfishassemblagesintheBitaRiverBothapproachesidentifiedenvironmentalfilteringandspeciessortingastheprincipalstructur-ingprocessesinthissystemVariationpartitioninganalysisimpliedthatdispersalplaysasignificantroleatthebasinscalehowevertheenvironmentalfractionexplainedmorevariationBothanalysesre-vealedassemblagepatternscorrelatedwithcomponentsofhabitatstructureSimilarconclusionshavebeenreportedfromstudiescon-ducted at smaller spatial scales inother tropical rivers (ArringtonWinemillerampLayman2005WillisWinemillerampLopez-Fernandez2005)with some also inferring that biotic interactionsplay a sig-nificant role in structuring fish assemblages within local habitats(MontantildeaWinemillerampSutton2014) Inastudyof theCinarucoRiveranOrinocotributaryintheVenezuelanLlanoswithcharacter-isticssimilartotheBitaRiverWillisetal(2005)foundthathabitatstructural complexity was strongly correlated with the functionaldiversity of fish assemblages These findings combinedwith ours
suggest that fish community structure of Neotropical rivers andstreams is influencedby localenvironmentalconditionsespeciallyaspectsassociatedwithsubstrateandhabitatstructuralcomplexitythat in turnaffect species sorting that results inClementsianpat-ternsofspeciesdistribution Improvedunderstandingof the influ-enceofdispersalenvironmentalfilteringandbioticinteractionsonspeciesassemblagesinpristinesystemswillbeessentialforeffortstoconserveandrestorebiodiversityForexampleifthespatialdis-tributionoffishesintheBitaRiverderiveslargelyfromdispersalandenvironmental filtering then strategies to conserve fish diversitymustemphasisemaintenanceofhabitatheterogeneityandconnec-tivityatappropriatespatialandtemporalscales
ACKNOWLEDG MENTS
WethankWorldWildlifeFoundation(WWF)ColombiaFundacioacutenOmachaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtandUniversidaddelTolimaforlogisticsandfinancingpartof this studyWealsowould like to thankDTaphornCDoNascimentoJGAlbornozandDMontoyafortheirassistanceinthefieldandlaboratorywork
ORCID
Edwin O Loacutepez-Delgado httpsorcidorg0000-0002-4010-1880
R E FE R E N C E S
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BlanchetFGLegendrePampBorcardD (2008a)Forwardselection of explanatory variables Ecology 89 2623ndash2632 httpsdoiorg 10189007-09861
BlanchetFGLegendrePampBorcardD(2008b)Modellingdirectionalspatialprocesses inecologicaldataEcological Modelling215325ndash336httpsdoiorg101016jecolmodel200804001
BlanchetFGLegendrePMarangerRMontiDampPepinP(2011)Modelling the effect of directional spatial ecological processes atdifferent scalesOecologia166 357ndash368 httpsdoiorg101007s00442-010-1867-y
BorcardDGillet Famp Legendre P (2011)Numerical ecology with R NewYorkSpringerhttpsdoiorg101007978-1-4419-7976-6
Brown B L amp Swan C M (2010) Dendritic network structure constrains metacommunity properties in riverine ecosystems Journal of Animal Ecology 79 571ndash580 httpsdoiorg101111 j1365-2656201001668x
Carvajal-Quintero J D Escobar F Alvarado F Villa-Navarro F AJaramillo-VillaUacuteampMaldonado-OcampoJA (2015)Variation infreshwater fish assemblages along a regional elevation gradient inthenorthernAndesColombiaEcology and Evolution52608ndash2620httpsdoiorg101002ece31539
Carvalho R A amp Tejerina-Garro F L (2015) The influence of en-vironmental variables on the functional structure of headwa-ter stream fish assemblages A study of two tropical basins in
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Central Brazil Neotropical Ichthyology 13 349ndash360 httpsdoiorg1015901982-0224-20130148
Castillo-Escrivagrave A Rueda J Zamora L Hernaacutendez R Del MoralM ampMesquita-Joanes F (2016) The role of watercourse versusoverland dispersal and niche effects on ostracod distribution inMediterraneanstreams(easternIberianPeninsula)Acta Oecologica731ndash9httpsdoiorg101016jactao201602001
ChaseJMKraftNJSmithKGVellendMampInouyeBD(2011)Usingnullmodelstodisentanglevariationincommunitydissimilarityfromvariationinα-diversityEcosphere21ndash11
Clements F E (1916)Plant succession An analysis of the development of vegetationWashingtonDCCarnegieInstitutionofWashingtonhttpsdoiorg105962bhltitle56234
Cottenie K (2005) Integrating environmental and spatial processesin ecological community dynamics Ecology Letters 8 1175ndash1182httpsdoiorg101111j1461-0248200500820x
Dallas T (2014) metacom An R package for the analysis of meta-community structure Ecography 37 402ndash405 httpsdoiorg101111j1600-0587201300695x
DallasTampDrakeJM(2014)RelativeimportanceofenvironmentalgeographicandspatialvariablesonzooplanktonmetacommunitiesEcosphere51ndash13
DatryTMeloASMoyaNZubietaJDeLaBarraEampOberdorffT(2016)MetacommunitypatternsacrossthreeNeotropicalcatch-mentswithvaryingenvironmentalharshnessFreshwater Biology61277ndash292httpsdoiorg101111fwb12702
DevercelliMScarabottiPMayoraGSchneiderBampGiriF(2016)Unravelling the role of determinism and stochasticity in struc-turing the phytoplanktonic metacommunity of the Paranaacute Riverfloodplain Hydrobiologia 764 139ndash156 httpsdoiorg101007s10750-015-2363-5
Diamond JM (1975)Assemblyof species communities InMartinLCodyandJaredMDiamondeditorsEcology and evolution of com-munities(pp342ndash444)CambridgeMassBelknapPressofHarvardUniversityPress
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Erős T (2017) Scaling fish metacommunities in stream networksSynthesisandfutureresearchavenuesCommunity Ecology1872ndash86httpsdoiorg10155616820171819
Erős T Takaacutecs P Specziaacuter A SchmeraD amp Saacutely P (2017) Effectof landscapecontextonfishmetacommunitystructuringinstreamnetworksFreshwater Biology62215ndash228httpsdoiorg101111fwb12857
FalkeJAampFauschKD(2010)Frommetapopulationstometacom-munities linking theorywith empirical observations of the spatialpopulationdynamicsofstreamfishesInAmericanFisheriesSocietySymposium(Vol73pp207ndash233)
FernandesIMHenriques-SilvaRPenhaJZuanonJampPeres-NetoPR(2014)Spatiotemporaldynamicsinaseasonalmetacommunitystructure is predictable The case of floodplain-fish communitiesEcography37464ndash475
Gleason H A (1926) The individualistic concept of the plant asso-ciation Bulletin of the Torrey Botanical Club 53 7ndash26 httpsdoiorg1023072479933
Heino JMeloASampBiniLM (2015)Reconceptualising thebetadiversity-environmental heterogeneity relationship in runningwater systems Freshwater Biology 60(2) 223ndash235 httpsdoiorg101111fwb12502
HeinoJMeloASSiqueiraTSoininenJValankoSampBiniLM(2015) Metacommunity organisation spatial extent and dispersal
in aquatic systems Patterns processes and prospects Freshwater Biology60845ndash869httpsdoiorg101111fwb12533
Landeiro V L Magnusson W E Melo A S Espiacuterito-Santo H MV amp Bini L M (2011) Spatial eigenfunction analyses in streamnetworks Do watercourse and overland distances produce dif-ferent results Freshwater Biology 56 1184ndash1192 httpsdoiorg101111j1365-2427201002563x
LegendrePLegendreLampLegendreP(2012)Numerical ecology 3rd EnglishedPierreLegendreandLouisLegendreAmsterdamBostonElsevier
LeiboldMAHolyoakMMouquetNAmarasekarePChaseJMHoopesMFhellipGonzalezA(2004)ThemetacommunityconceptAframeworkformulti-scalecommunityecologyEcology Letters7601ndash613httpsdoiorg101111j1461-0248200400608x
LeiboldMAampMikkelsonGM(2002)Coherencespeciesturnoverand boundary clumping Elements of meta-community structureOikos 97 237ndash250 httpsdoiorg101034j1600-07062002 970210x
Logue J B Mouquet N Peter H Hillebrand H amp TheMetacommunityWorkingGroup (2011)Empirical approaches tometacommunities A review and comparisonwith theoryTrends in Ecology amp Evolution 26 482ndash491 httpsdoiorg101016jtree201104009
Loacutepez-GonzaacutelezCPresleySJLozanoAStevensRDampHigginsCL(2012)MetacommunityanalysisofMexicanbatsEnvironmentallymediatedstructure inanareaofhighgeographicandenvironmen-tal complexity Journal of Biogeography 39 177ndash192 httpsdoiorg101111j1365-2699201102590x
MacarthurRampLevinsR (1967)The limitingsimilarityconvergenceanddivergenceofcoexistingspeciesThe American Naturalist101377ndash385httpsdoiorg101086282505
Meynard C N Lavergne S Boulangeat I Garraud L Van Es JMouquetNampThuillerW(2013)Disentanglingthedriversofmeta-community structure across spatial scales Journal of Biogeography401560ndash1571httpsdoiorg101111jbi12116
MontantildeaCGWinemillerKOampSuttonA(2014)IntercontinentalcomparisonoffishecomorphologyNullmodeltestsofcommunityassembly at thepatch scale in riversEcological Monographs84(1)91ndash107httpsdoiorg10189013-07081
MonteiroVFPaivaPCampPeres-NetoPR (2017)Aquantitativeframework to estimate the relative importance of environmentspatial variation and patch connectivity in driving communitycomposition Journal of Animal Ecology 86 316ndash326 httpsdoiorg1011111365-265612619
Mouillot D Dumay O amp Tomasini J A (2007) Limiting similaritynichefilteringandfunctionaldiversityincoastallagoonfishcommu-nitiesEstuarine Coastal and Shelf Science71443ndash456httpsdoiorg101016jecss200608022
Patterson B D amp Atmar W (1986) Nested subsets and thestructure of insular mammalian faunas and archipelagosBiological Journal of the Linnean Society 28 65ndash82 httpsdoiorg101111j1095-83121986tb01749x
Pease A A Gonzaacutelez-Diacuteaz A A Rodiles-Hernaacutendez R ampWinemiller K O (2012) Functional diversity and traitndashenviron-ment relationships of stream fish assemblages in a large tropi-cal catchment Freshwater Biology 57 1060ndash1075 httpsdoiorg101111j1365-2427201202768x
Peres-Neto P R amp Legendre P (2010) Estimating and con-trolling for spatial structure in the study of ecological commu-nities Global Ecology and Biogeography 19 174ndash184 httpsdoiorg101111j1466-8238200900506x
Peres-NetoPRLegendrePDraySampBorcardD(2006)VariationpartitioningofspeciesdatamatricesEstimationandcomparisonoffractionsEcology872614ndash2625httpsdoiorg1018900012-9658(2006)87[2614vposdm]20co2
emspensp emsp | emsp379LOacutePEZ- DELGADO Et AL
Presley S J Higgins C L ampWillig M R (2010) A comprehensiveframework for the evaluation ofmetacommunity structureOikos119908ndash917httpsdoiorg101111j1600-0706201018544x
Presley S J amp Willig M R (2010) Bat metacommunity structure on Caribbean islands and the role of endemics Global Ecology and Biogeography19185ndash199httpsdoiorg101111j1466-82382009 00505x
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RobertsDW (2007) labdsvOrdinationandmultivariateanalysis forecologyR package version1(1)
SharmaSLegendrePDeCaacuteceresMampBoisclairD(2011)Theroleofenvironmentalandspatialprocessesinstructuringnativeandnon-native fish communities across thousands of lakes Ecography 34762ndash771httpsdoiorg101111j1600-0587201006811x
SimberloffD(1983)Competitiontheoryhypothesis-testingandothercommunityecologicalbuzzwordsThe American Naturalist122626ndash635httpsdoiorg101086284163
Soininen J (2014) A quantitative analysis of species sorting acrossorganisms and ecosystems Ecology 95 3284ndash3292 httpsdoiorg10189013-22281
SoininenJ(2016)SpatialstructureinecologicalcommunitiesmdashAquan-titative analysis Oikos 125 160ndash166 httpsdoiorg101111oik02241
TerBraakCampŠmilauerP (2012)Canoco reference manual and userrsquos guide Software for ordination (version 50)IthacaNYMicrocomputerPower
Tilman D (1982) Resource competition and community structure PrincetonNJPrincetonUniversityPress
Tonkin J D Stoll S Jaumlhnig S C amp Haase P (2016) Elements ofmetacommunity structure of river and riparian assemblagesCommunities taxonomic groups and deconstructed trait groupsEcological Complexity 25 35ndash43 httpsdoiorg101016jecocom201512002
TorresKMMampHigginsCL (2016)Taxonomicandfunctionalor-ganizationinmetacommunitystructureofstream-fishassemblagesamongandwithinriverbasinsinTexasAquatic Ecology50247ndash259httpsdoiorg101007s10452-016-9572-5
TrujilloFampLassoCA(2017)IVBiodiversidaddelriacuteoBitaVichadaColombia Serie Editorial Fauna Silvestre Neotropical (p 349)BogotaColombiaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtFundacioacutenOmacha
Vitorino-JuacuteniorOBFernandesRAgostinhoCSampPeliciceFM(2016) Riverine networks constrain β-diversity patterns amongfishassemblagesinalargeNeotropicalriverFreshwater Biology611733ndash1745httpsdoiorg101111fwb12813
Willig M R Presley S J Bloch C P Castro-Arellano I CisnerosL M Higgins C L amp Klingbeil B T (2011) Tropical metacom-munities along elevational gradients Effects of forest type andother environmental factors Oikos 120 1497ndash1508 httpsdoiorg101111j1600-0706201119218x
WillisSWinemillerKampLopez-FernandezH (2005)Habitatstruc-turalcomplexityandmorphologicaldiversityoffishassemblagesinaNeotropicalfloodplainriverOecologia142284ndash295httpsdoiorg101007s00442-004-1723-z
WinemillerKOFleckerASampHoeinghausD J (2010)Patchdy-namicsandenvironmentalheterogeneityinloticecosystemsJournal of the North American Benthological Society29 84ndash99 httpsdoiorg10189908-0481
SUPPORTING INFORMATION
Additional supporting information may be found online in theSupportingInformationsectionattheendofthearticle
How to cite this articleLoacutepez-DelgadoEOWinemillerKOVilla-NavarroFADometacommunitytheoriesexplainspatialvariationinfishassemblagestructureinapristinetropicalriverFreshw Biol 201964367ndash379 httpsdoiorg101111fwb13229
368emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
1emsp |emspINTRODUC TION
Thespatialdistributionsof speciesand resultantdiversityof localassemblages are affected by multiple factors operating at differ-ent temporal and spatial scales (Pease Gonzaacutelez-Diacuteaz Rodiles-Hernaacutendez ampWinemiller 2012 Presley Higgins ampWillig 2010)andunderstandinghowthese factors influencepatternshasbeenthe main objective in community ecology (Landeiro MagnussonMeloEspiacuterito-SantoampBini2011)Streamecologistshavebeenpar-ticularly active in research addressing relationships of assemblagepatterns with abiotic (Mouillot Dumay amp Tomasini 2007) biotic(MacarthurampLevins1967)spatial(Peres-NetoampLegendre2010)and stochastic influences (Chase Kraft Smith Vellend amp Inouye2011)Thesefactorscanactindependentlysequentiallyorsimulta-neouslyandofteninteract(CarvalhoampTejerina-Garro2015)
Until recentlymost field studieshave focusedonassociationsbetweenlocalspeciesassemblagesandlocalenvironmentalfactorsDuringthepastdecadetherehasbeenarapidincreaseinresearchshowinghow local communities are influencedbydispersal of or-ganismsacrossvarious spatial scalesand involvingecologicalpro-cesses suchashabitat selectionand responses todisturbancesorcompetition (Erős 2017 Erős Takaacutecs Specziaacuter Schmera amp Saacutely2017LeiboldampMikkelson2002Leiboldetal2004Presleyetal2010)
Metacommunitytheoryexploreshowlocalinteractionsandre-gionalprocesses(dispersalsub-populationextirpation)shapecom-munity structureThewordmetacommunity isused todescribeanetworkof localcommunitiesof interactingpopulations linkedviadispersal Themetacommunityparadigmhas stimulated investiga-tiononhowpopulations interactatregionalaswellas localscales(LogueMouquetPeterampHillebrand2011)At least fourmodelsofmetacommunitydynamicshavebeenproposedeachdefinedbytherelativeinfluencesofdispersalenvironmentalfilteringhabitatselection habitat disturbance biotic interactions and stochasticfactors(Leiboldetal2004)
Three statistical approaches have been developed to studymetacommunitiesTheseareelementsofmetacommunitystructure(EMS)variationpartitioningandzero-summultinomialdistribution(Logueetal2011MonteiroPaivaampPeres-Neto2017)Thecur-rentstudyadoptsthefirsttwoapproachestotestmetacommunitytheoriesbyanalysingspatialvariationinfishassemblagesinapris-tineneotropicalriver
TheEMSmethod(LeiboldampMikkelson2002)analysesspeciesdistributionpatternsalongenvironmentalgradientstorevealmul-tipleEMSEMSusesanorderedsites-by-speciesincidencematrixby reciprocal averaging (RA) to evaluate assemblage coherenceturnover and boundary clumping The method can distinguishamongsixpossiblepatternsofspeciesdistributioncheckerboard(nonrandom patterns of species co-occurrence) Clementsian(clumps of co-occurring species distributed along spatial gradi-ents)Gleasonian(independentspeciesdistributionsalongspatialgradients) evenly spaced (hyperdispersed species distributions)nestedsubsetsandrandom(LeiboldampMikkelson2002Presleyetal 2010)Because the focal unitsof analysis are speciesdis-tributions rather than assemblage structure among sites thisapproach allows testingof hypotheses about competitive exclu-sion(negativecoherencendashcheckerboarddistribution)randomas-semblies (non-significantcoherence)andenvironmental filtering(positive coherencendashClementsian and Gleasonian distributions)(Meynardetal2013)
Variation partitioning another commonly used method incommunity ecologywasdesigned to reveal potentialmechanismsresponsibleforspatialvariation inassemblagecomposition(Peres-Neto LegendreDrayampBorcard 2006) This approach integratesenvironmentalvariationandspatialprocessesandfacilitates infer-encesaboutthelikelihoodthatoneormoreofthefourmetacom-munityprocesses(speciessortingmasseffectpatchdynamicsnullmodel)accountforobservedassemblagepatterns(Cottenie2005)
Spatial configurations such as dendritic structures of rivernetworks also affect fish assemblage structure (Vitorino-Juacutenior
were associatedwith environmental heterogeneity especially regarding habitatfeaturesSimilarlythevariationpartitioninganalysisshowedthatthepureenvi-ronmentalcomponentwashigherthanthepurespatialcomponentwhichiscon-sistentwithspeciessorting
6 In this paperwe demonstrated that variation partitioning andmetacommunitystructureanalysesprovidedcomplementaryfindingstoinferprocessesstructur-ingfishassemblagesintheBitaRiverBothapproachesidentifiedspeciessortingastheprincipalstructuringprocessesinthissystemThereforestrategiestopre-servefishdiversityinthissystemmustemphasisemaintenanceofhabitathetero-geneityandconnectivity
K E Y W O R D S
Clementsiandistributionenvironmentalfilteringfluvialgradientspeciessorting
emspensp emsp | emsp369LOacutePEZ- DELGADO Et AL
Fernandes Agostinho amp Pelicice 2016) Brown and Swan (2010)foundthatprocessesstructuringaquaticcommunitiesdifferedde-pendingonthenetworklocation(headwatersstreamsversusmainstem)Headwaters streamsare relatively isolatedwithin rivernet-workspossesshighhabitatheterogeneityandtendtohavestrongdisturbance regimes Patch dynamics may dominate metacom-munity dynamics under these conditions (Winemiller Flecker ampHoeinghaus2010)Converselyhabitatsinlowerreachesaremuchless isolated with greater potential for dispersal conditions thatshould facilitate species sorting and themass effect Communitystructure along river longitudinal gradients also couldbe affectedbytheunidirectionalflowofwaterDatryetal(2016)inferredthatspeciesdiversityincreasesfromupstreamtodownstreamduetothecombinedeffectofheadwaterisolationandwaterflowlimitingup-streamdispersal
Relatively few investigations have examined metacommunitypatternsalonglongitudinalfluvialgradients(AlmeidaampCetra2016Carvajal-Quintero etal 2015 Datry etal 2016 Vitorino-Juacutenioretal2016)andevenlessresearchhasbeenconductedinrelativelypristine riverswith catchments lacking significanthuman impactsKnowledge gained fromunperturbed systems enables predictionsabout future impacts to biodiversity and can help to guide con-servationandrestorationeffortsforriversthathavealreadybeendegraded
Weinvestigatedspatialvariationinfishassemblagestructurealong the longitudinal fluvialgradientof theBitaRiver anearlypristine tributary of the Orinoco River in the Llanos region ofColombiaWeanalysedfishspeciesdistributionsacrossthelongi-tudinalgradientinanefforttorevealrelativeinfluencesofabioticenvironmental and spatial factors and to infermetacommunitymodelsthatmayaccountforpatternsWepredictedthatatthebasin-scaledispersalratesaresufficiently lowtoallowlocalas-semblages to track spatial environmental variation (eg speciessorting)withamajorfractionofvariationinstructureexplainedbyapureenvironmentaleffect(HeinoMeloampBini2015HeinoMelo Siqueira etal 2015) Given that environmental condi-tions should have greater variation over broader spatial scalesmetacommunity patterns should reveal high turnover and fairlydiscrete local assemblageswithaClementsiandistributionAt amoreregionalscale(localitieswithinariversection)assemblagesinupstreamanddownstreamregionsmayreflectdifferentmeta-communityprocessesBecauseheadwaterstreamsarerelativelyisolatedwithintherivernetwork theyshouldreceivefewermi-grantsandmayhavelocalassemblagesstronglyinfluencedbylocalenvironmental conditions and species sorting Metacommunitypatterns of headwaters should reveal high turnover with threepossible distributional patterns Clementsian Gleasonian orevenlyspacedConversely sites locateddownstreamandclosertotherivermouthshouldbeinfluencedbyhighdispersalresult-inginagreaterimportanceofspatialfactorsandthemasseffectIn the downstream section in-channel environmental variationwillbelowerandmetacommunitypatternsmaybenestedalongthelongitudinalgradient
2emsp |emspMETHODS
21emsp|emspStudy area
TheBitaRiverBasinislocatedintheeasternplainsoftheColombianLlanos in theVichadadepartmentdraininganareaof812312haflowingeastroughly700kmtotheOrinocoRiverAsinmostnaturaldrainagesystemsstreamenvironmentalcharacteristics intheBitaBasinvaryalongthelongitudinalgradientMostheadwaterstreamsbeginatanelevationof300mabovesealevelThemiddleandlowersectionsare characterisedbyabroad sinuouschannel and flood-plainswithnumerouslagoonsandseasonallyfloodedforestsandsa-vannasTheaverageelevationalgradientislow(0357mkm)withtheriverenteringtheOrinocoRiveratanelevationof50mabovesea level near the municipality of Puerto Carrentildeo Riparian veg-etationiscomprisedofdensegalleryforestsdominatedbyCaraipa llanorum (Calophyllaceae) Astrocaryum jauari (Arecaceae) andParahancornia oblonga (Apocynaceae) and savannasdominatedbyAxonopus ancepsPanicum cayennense (Poaceae)Bulbostylis capilla-risCyperus haspanRhynchospora cephalotes(Cyperaceae)Caladium macrotites (Araceae) and C llanorum (Calophyllaceae) (Trujillo ampLasso2017)Themainriverandstreamscontainmultiplehabitatsthatvarymainly insubstratecompositionriparianvegetationanddepthDuringMayndashNovembertheriverfloodsadjacentareascre-atingcomplexanddiversehabitatsAverageairtemperatureintheregion is27degCandaverageannualprecipitation is2300mmwithmostrainfallfromMaytoAugust(TrujilloampLasso2017)
Twofieldexpeditionseachofwhich lasted30dayswereper-formedduringJanuaryandMarch2016whenlow-waterconditionsfacilitateefficientcaptureoffishesandrelationshipsbetweenfishassemblagestructureandhabitatshouldbestrongest(Peaseetal2012)Weselected34surveysitesdistributedalongtheentirebasin(E1uppermosttoE34lowest)followingtheriverrsquoslongitudinalgra-dient(SupportingInformationTableS1)Thebasinwasdividedintofoursections(highmidndashhighmidndashlowlow)usingthelineardistanceofthebasin(265km)divideditbythenumberofsections(four)Thisvalue(665km)wasusedtodefinethedistancebetweeneachsec-tionalongthelongitudinalgradient(Figure1)
22emsp|emspFish surveys
At each survey sitewe selected a 200-m reach encompassing allapparentmacrohabitatstocollectfishesanddataforlocalenviron-mental variables Fishes were collected using a seine (10times15m3-mmmesh)andtwogillnets(10times2m100-mmmesh)Withineachstudyreachsixseinehaulsof20mwereperformedandthegillnetwasdeployed for2hrAfter fisheswere removed fromnets theywere anaesthetised according to an approved TexasAampMuniver-sityanimaluseprotocol (IACUC2015-0360)by immersion in tric-aine methane sulfonate (MS-222) and euthanised in an overdoseofMS-222Specimenswere fixed in10formalin transported tothelaboratoryandtransferredto70ethanolforpreservationAllspecimenswereidentifiedcataloguedanddepositedinthevoucher
370emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
collectionsoftheUniversidaddelTolimaandInstitutovonHumboldtinColombia
23emsp|emspEnvironmental variables
Environmentalvariablesweredividedintosixcategorieswaterpa-rameters substrate instream cover channelmorphology local ri-parianbufferandlandscapevariablesfollowingPeaseetal(2012)(SupportingInformationTableS2)Priortofishsamplingwaterqual-ity parameters such as pH conductivity (μS) water temperature(degC)dissolvedoxygen(mgL)andtotalsolidsweremeasuredateachsurveysiteusingamultiparameterwaterqualitymeter (YSImodel85) To characterise substrate and instreamcover thepercentageof cobble (diameter6ndash25cm) sand (006ndash2mm)mud (lt006mm)filamentousalgaelargewoodydebris(gt50cm)smallwoodydebris(lt50cm)submergedrootsoverhangingterrestrialmaterialandleaflitterwerevisuallyestimatedalongthe200-mreachVariablessuchaswidthofriparianbuffer(m)areaoftheriparianforest(ha)andlandscape(presenceofroadscropsdistancetotheOrinocoRiverandaltitude)weremeasuredbygeoreferencedsatelliteimagesusing
ArcMap (Version1031) inacircularbufferof1kmStreamorderwascalculatedusingthefunctionstreamorderinArcMap(Version1031)methodStrahlerrsquosclassification
24emsp|emspData analysis
Analyses were performed at basin (number of sites=34) and re-gional scales Regional-scale datasets were grouped according tofoursectionsalongthelongitudinalfluvialgradient(highmidndashhighmidndashlow low)Thisapproachaimed toexplore thepossibility thatenvironmental or spatial variationwithin river sections influencesassemblage patterns according tometacommunity processes thatmay differ among sections Using the method of Dufrene andLegendre (1997) we calculated indicator values for species mostcommonwithinagivenriversectionThismethodisbasedonspe-ciesabundance(specificity)andfrequency(fidelity)atsurveysitesValuesfromthismethodrangefrom0to1with1beingaperfectindicator of a river section Significance of indicator values wasevaluatedusingthedifferencebetweentheobservedvalueandthemeanofvaluesobtainedfrom1000randompermutationsSpecies
F IGURE 1 emspMapoftheBitaRiverBasinshowingthefoursectionsandthe34surveysites
E1E2E3
E4
E9 E8E7E6
E34E33
E31
E30E29
E28E27
E26E20
E19
E15E11
68deg0prime0primeprimeW69deg0prime0primeprimeW
6deg0
0N
6deg0prime
0primeprimeN
Casanare River
Meta River
Orin
oco
Riv
er
Bita River
BrazilPeru
Bolivia
Argentina
Colombia
Venezuela
ChileParaguay
Ecuador
GuyanaSuriname
Uruguay
French Guiana (France)
E1
E2E3E4
E5E9
E8E7
E6E17
E15E14E13
E12
E10
E31
E30E29
E28
E27E26E25E23E22
E20E19
E34E33
E32
Meta River
Mid_High
Mid_Low Low
Venezuela
Colombia
South America
ColombiaBita River
Bita River
Bita R
iver
High
Bita River
Orin
oco
Riv
er
Bita river basin
0 40 8020 Kilometers
emspensp emsp | emsp371LOacutePEZ- DELGADO Et AL
indicator analysiswas performed using the function Indval of thepackagelabdsv(Roberts2007)intheRstatisticallanguage(Version341)(RCoreTeam2017)
25emsp|emspSpatial variables
Becausefishdispersalinriversisdifficulttoestimateweusedspa-tial predictors as proxies for dispersal potential Spatial eigenvec-torswereusedaspredictors to control for spatial autocorrelationandestimate the influenceof spatialdistanceon speciesdistribu-tionsandpatternsofassemblagestructure(Peres-NetoampLegendre2010) Spatial patternsweremodelled through asymmetric eigen-vectormaps (AEM)anapproachproposedbyBlanchetLegendreandBorcard(2008b)Thismethodtakesintoaccountthedirectionalaspectofinter-sitedistancesofsystemssuchasrivernetworks(egwaterflowrelativeposition)a limitationofmethodssuchasprin-cipal coordinates of neighbour matrices and Moranrsquos eigenvectormaps(BlanchetLegendreMarangerMontiampPepin2011SharmaLegendreDeCaacuteceresampBoisclair2011)
To perform theAEMwe used the distribution of sites acrossthebasintoconstructaconnectiondiagramthatlinkssitestooneanotheraccording topathwayswithin the rivernetwork (Figure1SupportingInformationTableS3)followingtheflowdirectionfromupstreamtodownstreamUsingtheconnectiondiagramasites-by-edgesmatrixwasconstructedandthismatrixwasusedtocalculateasymmetricalspatialeigenfunctionsthroughsingularvaluedecom-positionwhichwereused laterasspatialdescriptorsAEMeigen-functionswerecalculatedusingthefunctionaemfromthepackageadespatial inR (Version341) (Drayetal2017)Toobtainanad-ditional spatial descriptorwemeasured thewatercourse distanceas thedistance fromeachpoint to the rivermouthalong thewa-tercourseusinggeoreferencedsatellite images inArcMap(Version1031)Thisvariableismorerelevanttofishdispersalthanstraight-linedistancethatincludesoverlandsegments(albeitsuchdispersalroutesarepossibleduringtheannualfloodpulse)
26emsp|emspElements of the metacommunity structure
Usingthesites-by-species incidencematrix (excludingrarespeciesthatoccurredatonlyonesite)asinputforRAEMSwereanalysedbasedonspeciesscoresonthefirsttwoaxesToevaluatepatternswithrespecttosixidealiseddistributionalpatterns(1)checkerboard(Diamond1975) (2)nestedsubsets (PattersonampAtmar1986) (3)Clementsian (Clements 1916) (4) Gleasonian (Gleason 1926) (5)evenlyspaced(Tilman1982)and(6)random(Simberloff1983)wefollowedtheframeworkproposedbyLeiboldandMikkelon(2002)andPresleyetal(2010)
Coherencewasassessedbycalculatingthenumberofgapsinspeciesrange(observedabsences)fromtheorderedmatrixfromRAStatisticalsignificanceofcoherencewasevaluatedusingthez-score test comparing observed absenceswith those expectedbasedon1000randomisedsimulationsWheneverobservedab-sencesaregreaterthanexpected(negativecoherence)thereisa
checkerboardpatternConversely ifobservedabsencesare lessthanexpectedunderthenullmodel(positivecoherence)theanal-ysis tests forevidenceofspeciesturnoverandboundaryclump-ing No significant difference between observed and expectedabsences indicates randomdistributions (no coherence) (LeiboldampMikkelson2002)
TurnoverwasevaluatedbycalculatingthenumberofspeciesreplacementsbetweensitesWeusedaz-score test tocompareobserved species replacements with the mean for species re-placements obtained from 1000 null simulations Significantlyfewerobservedreplacementsare indicativeof lowturnoveranddistributionsthatarenestedsubsetswhereasmoreobservedre-placementsindicatehighturnoverFinallyboundaryclumpingwasevaluatedusingMorisitarsquosindexforwhichavalueofoneindicatesthatboundariesarenotclumpedvalueslt1indicateclumpingandlt1indicateshyperdispersionStatisticalsignificanceofMorisitarsquosindexwasdeterminedusingtheχ2 testMore informationaboutinference of idealised patterns can be found in fig1 of Presleyetal(2010)
Weappliedafixedproportionalnullmodel(ier1 null model in MetacommunityfunctioninR)totestsignificanceofcoherenceandturnoverThisnullmodelmaintainsspeciesrichnessofeachsamplingsite but fills species ranges based on theirmarginal probabilitiesRandomsimulatedmatriceswerecalculatedusing1000simulations(Dallas2014)EMSwereassessedusingtheMetacommunity func-tionoftheMetacompackage(Dallas2014)inR
27emsp|emspVariation partitioning
Weusedvariationpartitioninganalysis(Peres-Netoetal2006)asanadditionalmeanstoidentifymetacommunitytypesandtoassesstherelativecontributionofenvironmentalandspatialpredictorsonfishdistributionsatbasinandregionalscalesThismethodallowedus to determine the contribution of environmental conditions in-dependentofspaceandvice versacontrollingfortypeIerrorasaproductofspatialautocorrelationintheenvironmentalcomponent(Peres-NetoampLegendre2010)Type I errormay lead to spuriousconclusions generating significant speciesndashenvironment relation-ships thatareartefactsPartitioninganalysiswasconductedusingthe adjusted R-squared in redundancy analysis on the Hellinger-transformedspecies-by-sitesabundancematrixandtwosetsofpre-dictorsenvironment[E]andspace[S]
To create each set of predictors firstwe reduced the num-berofvariablesineachmatrixbecausetheyreducethestatisticalpowerofthetesttoidentifyuniqueandsignificantenvironmentalandspatialcontributions(Peres-NetoampLegendre2010)Weper-formedavariableselectionforeachsetofpredictorsto identifysignificantvariables(plt05)associatedwiththespecies-by-sitesabundancematrixForthe[E]matrixwetransformedtheenviron-mentalvariablesduetononhomogeneousunitsandverifiedthatthedistributionwasnormalThosevariablesexpressedaspropor-tionsweretransformedtothearcsineoftheirsquarerootThere-mainingvariableswerelog(x+1)transformedwiththeexception
372emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
ofordinal andcategoricaldata forwhichno transformationwasdone Data for all variables were standardised and centred bycalculating z-scores (mean=0 standard deviation=1) (BorcardGilletampLegendre2011FalkeampFausch2010)Thefunctionfor-wardselfromtheRlibraryadespatial(Drayetal2017)wasusedtoperformvariableselectionusing999permutationswithasig-nificance level of p=05Selectedvariablescomprisedtheenvi-ronmentalmatrix[E]usedforthepartitionanalysis
Spatial predictors from the AEM analysis and inter-site dis-tancedataweretestedforinclusioninthespatialmatrix[S]usingtheforwardselfunctionoftheRlibraryadespatialusingthesameapproachasdescribedforthe[E]matrixSelectedvariableswereincludedinthe[S]matrixforthepartitioninganalysisFinallywithourthreedatasets(Hellinger-transformedsites-by-speciesmatrix[E]and [S])weapplied thevarpart functionof thevegan libraryin R to perform variation partitioning analysis as proposed byBlanchetLegendreandBorcard(2008a)andBorcardetal(2011)
Thesignificancelevelsofthecomponentsproducedbythevari-ation partitioning were used to classify the fish metacommunityaccording to one of the four metacommunity paradigms speciessorting mass effect neutral model and patch dynamics (Leiboldetal2004)TochoosetheproperparadigmweappliedthedecisiontreeproposedbyCottenie(2005)
28emsp|emspDrivers of metacommunity structure
We used two approaches to identify the underlying environmen-talandspatialfactorsthatcorrelatewithobservedpatterns inthemetacommunityorganisationat thebasinandregional levelFirstwecalculatedSpearman-rankcorrelationsbetweenthetwodomi-nantaxesextractedfromtheRAused in theEMSframeworkandeachvariablefromthesetofenvironmentalandspatialpredictorsSecond a variable selection procedure was performed for eachgroup (environmentalandspatial)usingthe forwardsel functionoftheRlibraryadespatialCorrelationswerecalculatedusingthefunc-tioncortestofthestatslibraryinR
3emsp |emspRESULTS
High and midndashhigh sections were characterised by higher valuesofdissolvedoxygenelevationdistance fromthemainsourcesa-vannaareaflowandpercentagesofgrassesandfilamentousalgae(Supporting Information Table S2) Channel width water tem-perature and total solids tended tobe lower atupper-basin sitesSubstratumandinstreamcoverwereheterogeneouswithinallfoursectionsSiteslocatedinthelowersectionstendedtohavemoreex-tensiveriparianforestmorelagoonsinadjacentfloodplainswiderchannelsandlowerflowvelocity(SupportingInformationTableS2)
A total of 25928 fish specimens representing 201 species 39familiesand10orderswerecollectedduringthestudySixtyspecieswerecollectedinthehighsection148inthemidndashhigh142inthemidndashlowand67inthelowsectionAveragenumberofspecimenspersite
was762andspeciesrichnessvariedfrom4to55ThemostabundantspecieswereAmazonprattus scintilla(Engraulidae)andtwospeciesofthegenusHemigrammus(Characidae)H elegans and H geisleriThesethreespeciesrepresentednearly30ofthecollectedfishspecimens(Supporting Information Table S4) Fifty-one rare species were col-lectedatsinglesitesSeveralspecieswereidentifiedasindicatorsforthe low (12spp)andhigh (sixspp) sectionsandfewornonewereidentifiedforthemidndashhigh(onesp)andlow(0sp)sections(Table1)
31emsp|emspElements of metacommunity structure
Atthebasinscale(34sites)theEMSrevealedpositivecoherencewithaClementsiandistributionalongbothof thedominantaxesmodel-ling gradientsof fish assemblage structure (RA1andRA2) (Table2Figure2)Thusatabroadspatialscalespeciesseemtorespondasgroupstoenvironmentalfactorsleadingtorelativelydiscreteassem-blagesalongthelongitudinalgradientTheClementsianpatterniden-tified forRA1waspositively correlatedwithchannelwidth streamorderandspatialpredictors(AEM21AEM25)andnegativelycorre-latedwithvariablesassociatedtosubstrateinstreamcoverandlocalriparianvegetation(Table3)ForRA2onlythespatialpredictorAEM1(positive)andflow(negative)werecorrelatedwithsitescores(Table3)
Metacommunitystructurewasanalysedforsiteswithineachof the foursectionsalongthe longitudinal fluvialgradient (highmidndashhighmidndashlowandlow)Assemblagesinthehighandlowsec-tionshadnegativecoherenceandarandompatternforbothRAaxes in thehighsectionandRA1 in the lowsectionRA2 in the
TABLE 1emspSummaryoftheindicatorspeciesanalysisforeachsectionintheBitaBasin
Species Section Indicator value
Hemigrammus schmardae High 059
Parotocinclus eppleyi High 040
Ammocryptocharax elegans High 040
Farlowella vittata High 038
Mastiglanis asopos High 037
Phenacorhamdia anisura High 035
Steindachnerina argentea Midndashhigh 048
Nannostomus unifasciatus Low 089
Microphilypnus ternetzi Low 084
Hemigrammus elegans Low 083
Apistogramma minima Low 066
Brittanichthyssp Low 061
Curimatopsis evelynae Low 060
Hemigrammus analis Low 060
Acaronia vultuosa Low 059
Hemigrammus rhodostomus Low 058
Ochmacanthus alternus Low 058
Acestrorhynchus minimus Low 057
Hemigrammus barrigonae Low 033
Onlyspecieswithstatisticallysignificantvalues(plt005)arelisted
emspensp emsp | emsp373LOacutePEZ- DELGADO Et AL
TABLE 2 emspResultsofEMSanalysisoffishmetacommunitystructureattheleveloftheentireBitaBasinandattheregionallevelforhighmidndashhighmidndashlowandlowsectionsoftheriver
Axis of variation Basin High Midndashhigh Midndashlow Low
Species 145 37 84 85 55
Sites 34 5 12 14 3
Primaryaxis
Coherence
Observedabsences 2506 55 318 453 14
Expectedabsences 3032 41 445 554 14
p-value lt0001 0127 lt0001 0001 09
Turnover
Observedreplacements 347752 543 20498 27534 630
Expectedreplacements 186586 624 14397 20631 621
p-value lt0001 015 lt0001 lt0001 089
Clumping
Morisitarsquosindex 158 102 137 114 1
p-value lt0001 017 lt0001 lt0001 gt0999
Best-fitpatterns Clementsian Random Clementsian Clementsian Random
Secondaryaxis
Coherence
Observedabsences 2706 40 383 541 22
Expectedabsences 3030 4032 447 557 13
p-value 0001 096 003 064 0007
Turnover
Observedreplacements 366210 597 19630 14070 377
Expectedreplacements 186480 622 14397 20697 541
p-value lt0001 065 lt0001 lt0001 0004
Clumping
Morisitarsquosindex 155 136 137 117 1
p-value lt0001 0004 lt0001 lt0001 gt0999
Best-fitpatterns Clementsian Random Clementsian Random Nesteddistribution
Statisticallysignificantvalues(plt005)areshowninboldtype
F IGURE 2 emspSpeciesdistributionsamong34sitesintheBitaBasinorderedaccordingtoscoresonthefirstaxisofthereciprocalaveragingrevealingaClementsiangradientSitesareinrowsspeciesareincolumns
E16E8E7
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E13E6
E29E28E19
Species
AbsencePresence
374emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
lowsectionrevealedanesteddistributionNosignificantcorrela-tionsbetweenassemblagestructureandenvironmentalorspatialfactorswerefoundforthehighandlowsections(Tables2and3Figure3)
Midndashhigh and midndashlow sections displayed Clementsian pat-terns of assemblage structure for both the first and second RAaxes For the midndashhigh section no significant correlations wereobtained between RA1 and environmental or spatial variableshoweverRA2waspositivelycorrelatedwiththepresenceofroadsandthespatialpredictorAEM1(Tables2and3Figure3)ForthemidndashlowsectionRA1waspositivelycorrelatedwithsubstrateandinstreamcoverandRA2withthespatialpredictorAEM1(Tables2and3Figure3)
32emsp|emspVariation partitioning analysis
Atthebasinscaleallthecomponentsfromvariationpartitioning(ESE+SE|SS|E)explainedsignificant(plt05)variationinfishassem-blagestructuresupportingtheideathatmetacommunitydynamicsinfluencepatternsat that scale (Table4)Around19of the totalexplainedvariation (E+S)wasmodelledbythecombined influenceofenvironmentandspatialpredictors69byapureenvironmentalcomponent(E|S)and46byapurespatialcomponent(S|E)Eighty-onepercentofthevariationwasunexplainedEnvironmentalvaria-tionatthebasinscalewassignificantlyinfluencedbypercentageof
mudsubstratesmallwoodydebrisandwaterconductivity(Table4)Onlyfourof33spatialpredictorsweresignificant(AEM1AEM16AEM18AEM21Table4)
Attheregionalscalethenumberofsiteswithinthehighandlow sections was too small for statistical analysis and only themidndashhigh and midndashlow sections were analysed Only the envi-ronmental component (E) explained significant variation in fishassemblagestructurewithineachofthesesections(Table4)indi-catingthatitwasnotpossibletoinferanymetacommunitymodelIn themidndashhigh section a significant environmental componentinfluenced most strongly by percentage of mud substrate andsmallwoodydebrisexplained16ofassemblagevariationInthemidndashlow section 14of assemblage variationwas explainedbyan environmental componentwith conductivity andpercentageofsmallwoodydebrismostinfluential
33emsp|emspDrivers of fish community structure
The set of variables selected by variation partitioning includedmostof theones thathadhighestSpearman rankcorrelationsAtthe basin level environmental variables related to substrate andinstream coverwere identified by bothmethods (Tables3 and 4)EnvironmentalpredictorssuchaspercentagesofmudsubstrateandsmallwoodydebrisandthespatialpredictorAEM1weresignificantatbothbasinandregionalscales(Tables3and4)
TABLE 3emspSpearman-rankcorrelationsbetweenpredictorsandscoresobtainedfromthefirsttwoaxesfromthereciprocalaveragingordinationofthesites-by-speciesincidencematrixintheelementsofmetacommunitystructureframework
Variables
Basin Midndashhigh Midndashlow
r p r p r p
Primaryaxis
()Mud minus055 lt001 061 002
()Largewoodydebris minus048 lt001
()Smallwoodydebris minus048 lt001 055 004
()Submergedroots minus048 lt001 061 002
()Streamshadedbytreecanopy minus047 lt001 061 002
Width 037 003
Streamorder 052 lt001
AEM21 039 002
AEM25 039 002
Secondaryaxis
()Mud minus071 001
()Largewoodydebris minus066 002
()Smallwoodydebris minus075 lt001
()Streamshadedbytreecanopy minus075 lt001
Flow minus047 lt01
Neartoroads 066 002
AEM1 051 lt01 06 004 069 001
Onlystatisticallysignificantvalues(plt005)areshownNosignificantcorrelationswerefoundforhighandlowsectionsAEMasymmetriceigenvectormaps
emspensp emsp | emsp375LOacutePEZ- DELGADO Et AL
F IGURE 3 emspSpeciesdistributionswithinfourriversectionsorderedaccordingtoscoresonthefirstreciprocalaxis
High
E5
E2
E4
E3
E1
Species
Midminushigh
E16
E8
E7
E9
E14
E17
E10
E15
E12
E11
E13
E6
Species
Midminuslow
E30E20E24E18E26E27E31E25E21E23E22E29E28E19
Species
Low
E33
E34
E32
Species
Absence
Presence
Component
Bita basin Midndashhigh Midndashlow
AdjR2 p AdjR2 p AdjR2 p
E 014 0001 016 0007 014 0002
S 012 0001 000 05 000 056
E+S 019 0001 018 02 014 013
E|S 0069 0001 020 03 016 016
S|E 0046 0025 002 06 000 051
b 0075
R 081 082 086
Variablesselected Mud[E] Smallwoodydebris[E] Conductivity[E] AEM1[S] AEM16[S] AEM18[S] AEM21[S]
Mud[E] Smallwoodydebris[E]
Conductivity[E] Smallwoodydebris[E]
AEMasymmetriceigenvectormapsAdjR2adjustedR2forthepercentageofvariationEenviron-mentalvariationSspatialvariationE+STotalexplainedvariationE|SPureenvironmentalvaria-tion S|E Pure spatial variation b Variation shared by environmental and spatial factorsRUnexplainedvariation(residual)Significantvalues(plt005)areshowninbold
TABLE 4emspVariationpartitioninganalysisforfishassemblagesandselectedgroupsofenvironmentalandspatialvariablesatbasinandregionalscales
376emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
4emsp |emspDISCUSSION
In this study we applied complementary statistical analyses toinvestigate fish species distributions and variation in assemblagestructureacrossalongitudinalfluvialgradienttorevealtherelativeinfluenceoffactorsassociatedwithenvironmentalconditions(eghabitat features environmental filtering) and spatial relationshipsinfluencingdispersalResultsfromtheseanalysesprovidedabasistoinfertherelativeinfluenceofbiotic interactionsandstochasticprocessesincommunityassemblyattwospatialscalesOurresultssuggest that the fishmetacommunity in theBitaRiver exhibits aClementsiandistributionimplyingthatspeciesrespondtotheen-vironmental and fluvial gradient as groups with fairly consistentcompositions (Clements1916)Thispatternalso impliesapoten-tialeffectofenvironmentalfilteringatthescaleoftheentirebasinSimilarlythevariationpartitioninganalysisshowedthatthevaria-tion explainedby the pure environmental componentwas higherthanthepurespatialcomponentwhichalsoisconsistentwithspe-ciessortingSpeciessortingoccurswhenorganismsselecthabitatsthat convey relativelyhigh fitness andor avoidor areotherwiseeliminatedfromhabitatsthatreducetheirfitness(Soininen2014)Thesefindingssupportourpredictionthatatthebasinscaledis-persalratesarelowandassemblagestructureisstronglyinfluencedbyspeciessorting
Ourregional-scaleresultsalsorevealedaClementsiandistribu-tionoflocalassemblagecompositionThispatterncouldhavebeencausedbyspeciesresponsestospatialvariationofabioticandbioticenvironmentalfactorsSpearmancorrelationbetweenenvironmen-talvariablesandsitescoresongradientsofassemblagevariationin-dicatedthatstreamorderandchannelsizehadstrongassociationswithlocalassemblagestructureVariablesassociatedwithsubstratecomposition and instream cover also had significant associationsFishes in theBitaRiver apparently respond to theseenvironmen-talvariablesasrelativelyclumpedgroupsClementsianassemblagestructure has been found in plants (Meynard etal 2013 Willigetal2011)mammals(Loacutepez-GonzaacutelezPresleyLozanoStevensampHiggins 2012PresleyampWillig 2010) andvarious freshwateror-ganismsincludingplanktonmacroinvertebratesandfish(DallasampDrake2014Erősetal2017FernandesHenriques-SilvaPenhaZuanonampPeres-Neto2014TonkinStollJaumlhnigampHaase2016TorresampHiggins2016)
Weproposed that somemetacommunity processes and resul-tantpatternswouldnotbethesameattwodifferentspatialscalesofanalysisWefoundpositivecoherenceandturnoverinupstreamregionsandpositivecoherenceandnegativeturnoverwithnesteddistributionsindownstreamregionsThesepatternswerenotpre-dicteda prioriAttheregionalscaleaClementsiandistributionwasfoundonlyinthemidndashhighandmidndashlowsectionsofthebasinsug-gesting that species responded as groups to environmental filtersmore strongly in these middle sections of longitudinal gradientAssemblage coherence was non-significant (ie not statisticallydifferent from a random distribution) for the high and low sec-tionsoftheriverAccordingtoPresleyetal(2010)non-significant
coherence is not always an indicatorof randomstructuresDallasandDrake(2014)foundthatinmoststudiesinwhichrandompat-ternswerefoundsamplescontainedfewspeciesfewsitesorbothand therefore therewas not enough statistical power to test co-herenceusing randomisationprocedures Inourstudy therewerefewersurveysitesforthehighestandlowestsectionsoftheriverwhichmayaccountfornon-significantcoherenceinthosesectionsNonethelessFigure3revealsapatternofspeciesdistributionwithhigh turnover and boundary clumping in the high section such apatternislessdiscernibleforthelowsection
Inthelowsectionoftheriverdistributionpatternswerediffer-ent for the twoassemblageordinationaxesRandomdistributionswere inferredbasedon the firstordinationaxisandnesteddistri-butionswerefoundforthesecondaxisResultsofthesecondaxissupport our hypothesis that environmental gradients over smallerspatial scales in the low sectionmay promote nested distributionpatternsSitesinthissectionwerecharacterisedbysubstratescom-prised almost entirely of sandwith patches of leaf litter and lowvariation inwater physicochemistryDistribution patternsmay bemorelikelytobenestedwhensamplesizeissmallandenvironmen-talgradientsareshort(Tonkinetal2016)ConverselylargesamplesizesandlongenvironmentalgradientsmayincreasethelikelihoodoffindingClementsianandGleasonianpatterns
At the basin scale the total variation in assemblage structurecapturedbythemodel(19)wasdecomposedinto69purelyen-vironmental 75 shared by environmental and spatial and 46purelyspatialcomponents(eachfractionwithplt0001)Thepureenvironmental component was strongly associated with the per-centage of mud substrate small woody debris and conductivitySharedenvironmentalandspatialfactorsalsowereassociatedwiththepercentageofmudandconductivityThepure spatial compo-nentwas represented by eigenvectors fromAEM predictors thatare not easily interpretable because they integrate multiple spa-tial scales (Peres-Netoamp Legendre 2010)with small-scale spatialvariables tending tobeassociatedwithmasseffectdynamics andlarge-scalespatialvariablestendingtobeassociatedwithdispersallimitation (HeinoMeloampBini2015HeinoMeloSiqueiraetal2015) At the scale of the entire basin both processes probablyoccursimultaneously
Thepercentageofvariationexplainedbyourpartitioninganal-ysiswas low(19)acommonfinding incommunityecologystud-ies (Castillo-Escrivagrave etal 2016 Devercelli Scarabotti MayoraSchneider amp Giri 2016 Erős etal 2017 Legendre amp Legendre2012TerBraakampŠmilauer2012)Thelargeamountofunexplainedvariationcouldbeduetoseveralfactorssuchasfailuretoincludeother relevant environmental variables and spatial predictors orvariablesrelatedtootherprocessessuchasbiotic interactionsOfcoursetherealsocouldbealargeinfluenceofstochasticdynamicsSoininen(2016)reviewed322datasetsandfoundthatspatialpredic-torsobtainedfromspatialeigenvectoranalysisgenerallyexplainedasmall fractionof totalassemblagevariationwhichsuggests thatspatialpredictors fromAEMmayperformpoorly incapturingpat-ternsreflectingdispersaldynamicsMonteiroetal(2017)proposed
emspensp emsp | emsp377LOacutePEZ- DELGADO Et AL
theuseofpatchconnectivitymetricsaspredictorsofdispersaldy-namicsratherthanspatialeigenvectorsTheyfoundthatthepatchconnectivityframeworkincreasedtheamountofexplainedvariationbyasmuchas50
Becausebothpureenvironmentalandpurespatialcomponentswere statistically significant both species sortingandmasseffectdynamics could have influenced fish assemblage structure at thebasin scale (Cottenie 2005) However because the proportionexplained by the pure environmental fractionwas larger than thespatialfraction(69versus46)speciessortingwasprobablythemoreinfluentialcomponentstructuringfishassemblagesinthissys-temTheseresultsareinaccordancewithHeinoMeloampBini(2015)whofoundthatanintermediateamountofdispersalwasneededforthespeciessortingprocesssincespeciesneedtodispersefromoneplace toanother searching forsiteswith theappropriateenviron-mentalconditionstothrive
Soininen(2014)reviewed326investigationsthatusedvariationpartitioning analysis finding that environmental variables usuallyexplainedthemostvariationinassemblagecompositionandspeciessortingwasmostofteninferredSpeciessortingmaybethepreva-lentmetacommunitymodel for river and stream fish assemblages(Cottenie2005FalkeampFausch2010HeinoMeloampBini2015HeinoMeloSiqueiraetal2015)
At a smaller spatial scale we predicted that species sortingstrongly influencesassemblages inheadwaterswherehabitatsarerelativelyisolatedwithintherivernetworkwhereasassemblagesindownstreamreacheswouldhavegreaterdispersalandbemorein-fluencedbymasseffectdynamicsThesepredictionswerenotcon-firmedBasedonvariationpartitioninganalysisandthedecisiontreeofCottenie(2005)noevidencewasobtainedtosupportanyofthemetacommunity paradigmsproposedby Leibold etal (2004) Thevariation partitioning procedure could only be performed for themidndashhighandmidndashlowsectionsthathadsufficientlylargesamplesOnlytheenvironmentalfractionwassignificantandthisresultcanbepronetotypeIerror
Insummaryvariationpartitioningandmetacommunitystructureanalysesprovidedcomplementaryfindingstoinferprocessesstruc-turingfishassemblagesintheBitaRiverBothapproachesidentifiedenvironmentalfilteringandspeciessortingastheprincipalstructur-ingprocessesinthissystemVariationpartitioninganalysisimpliedthatdispersalplaysasignificantroleatthebasinscalehowevertheenvironmentalfractionexplainedmorevariationBothanalysesre-vealedassemblagepatternscorrelatedwithcomponentsofhabitatstructureSimilarconclusionshavebeenreportedfromstudiescon-ducted at smaller spatial scales inother tropical rivers (ArringtonWinemillerampLayman2005WillisWinemillerampLopez-Fernandez2005)with some also inferring that biotic interactionsplay a sig-nificant role in structuring fish assemblages within local habitats(MontantildeaWinemillerampSutton2014) Inastudyof theCinarucoRiveranOrinocotributaryintheVenezuelanLlanoswithcharacter-isticssimilartotheBitaRiverWillisetal(2005)foundthathabitatstructural complexity was strongly correlated with the functionaldiversity of fish assemblages These findings combinedwith ours
suggest that fish community structure of Neotropical rivers andstreams is influencedby localenvironmentalconditionsespeciallyaspectsassociatedwithsubstrateandhabitatstructuralcomplexitythat in turnaffect species sorting that results inClementsianpat-ternsofspeciesdistribution Improvedunderstandingof the influ-enceofdispersalenvironmentalfilteringandbioticinteractionsonspeciesassemblagesinpristinesystemswillbeessentialforeffortstoconserveandrestorebiodiversityForexampleifthespatialdis-tributionoffishesintheBitaRiverderiveslargelyfromdispersalandenvironmental filtering then strategies to conserve fish diversitymustemphasisemaintenanceofhabitatheterogeneityandconnec-tivityatappropriatespatialandtemporalscales
ACKNOWLEDG MENTS
WethankWorldWildlifeFoundation(WWF)ColombiaFundacioacutenOmachaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtandUniversidaddelTolimaforlogisticsandfinancingpartof this studyWealsowould like to thankDTaphornCDoNascimentoJGAlbornozandDMontoyafortheirassistanceinthefieldandlaboratorywork
ORCID
Edwin O Loacutepez-Delgado httpsorcidorg0000-0002-4010-1880
R E FE R E N C E S
AlmeidaRSampCetraM(2016)Longitudinalgradienteffectsonthestream fishmetacommunityNatureza amp Conservaccedilatildeo14 112ndash119httpsdoiorg101016jncon201610001
ArringtonDAWinemillerKOampLaymanCA(2005)CommunityassemblyatthepatchscaleinaspeciesrichtropicalriverOecologia144157ndash167httpsdoiorg101007s00442-005-0014-7
BlanchetFGLegendrePampBorcardD (2008a)Forwardselection of explanatory variables Ecology 89 2623ndash2632 httpsdoiorg 10189007-09861
BlanchetFGLegendrePampBorcardD(2008b)Modellingdirectionalspatialprocesses inecologicaldataEcological Modelling215325ndash336httpsdoiorg101016jecolmodel200804001
BlanchetFGLegendrePMarangerRMontiDampPepinP(2011)Modelling the effect of directional spatial ecological processes atdifferent scalesOecologia166 357ndash368 httpsdoiorg101007s00442-010-1867-y
BorcardDGillet Famp Legendre P (2011)Numerical ecology with R NewYorkSpringerhttpsdoiorg101007978-1-4419-7976-6
Brown B L amp Swan C M (2010) Dendritic network structure constrains metacommunity properties in riverine ecosystems Journal of Animal Ecology 79 571ndash580 httpsdoiorg101111 j1365-2656201001668x
Carvajal-Quintero J D Escobar F Alvarado F Villa-Navarro F AJaramillo-VillaUacuteampMaldonado-OcampoJA (2015)Variation infreshwater fish assemblages along a regional elevation gradient inthenorthernAndesColombiaEcology and Evolution52608ndash2620httpsdoiorg101002ece31539
Carvalho R A amp Tejerina-Garro F L (2015) The influence of en-vironmental variables on the functional structure of headwa-ter stream fish assemblages A study of two tropical basins in
378emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
Central Brazil Neotropical Ichthyology 13 349ndash360 httpsdoiorg1015901982-0224-20130148
Castillo-Escrivagrave A Rueda J Zamora L Hernaacutendez R Del MoralM ampMesquita-Joanes F (2016) The role of watercourse versusoverland dispersal and niche effects on ostracod distribution inMediterraneanstreams(easternIberianPeninsula)Acta Oecologica731ndash9httpsdoiorg101016jactao201602001
ChaseJMKraftNJSmithKGVellendMampInouyeBD(2011)Usingnullmodelstodisentanglevariationincommunitydissimilarityfromvariationinα-diversityEcosphere21ndash11
Clements F E (1916)Plant succession An analysis of the development of vegetationWashingtonDCCarnegieInstitutionofWashingtonhttpsdoiorg105962bhltitle56234
Cottenie K (2005) Integrating environmental and spatial processesin ecological community dynamics Ecology Letters 8 1175ndash1182httpsdoiorg101111j1461-0248200500820x
Dallas T (2014) metacom An R package for the analysis of meta-community structure Ecography 37 402ndash405 httpsdoiorg101111j1600-0587201300695x
DallasTampDrakeJM(2014)RelativeimportanceofenvironmentalgeographicandspatialvariablesonzooplanktonmetacommunitiesEcosphere51ndash13
DatryTMeloASMoyaNZubietaJDeLaBarraEampOberdorffT(2016)MetacommunitypatternsacrossthreeNeotropicalcatch-mentswithvaryingenvironmentalharshnessFreshwater Biology61277ndash292httpsdoiorg101111fwb12702
DevercelliMScarabottiPMayoraGSchneiderBampGiriF(2016)Unravelling the role of determinism and stochasticity in struc-turing the phytoplanktonic metacommunity of the Paranaacute Riverfloodplain Hydrobiologia 764 139ndash156 httpsdoiorg101007s10750-015-2363-5
Diamond JM (1975)Assemblyof species communities InMartinLCodyandJaredMDiamondeditorsEcology and evolution of com-munities(pp342ndash444)CambridgeMassBelknapPressofHarvardUniversityPress
DraySBlanchetGBorcardDGuenardGJombartTLarocqueGhellipWagnerHH(2017)adespatialMultivariatemultiscalespatialanalysisRpackageversion009
DufreneMampLegendreP (1997)Speciesassemblagesand indicatorspecies The need for a flexible asymmetrical approachEcological Monographs67345ndash366
Erős T (2017) Scaling fish metacommunities in stream networksSynthesisandfutureresearchavenuesCommunity Ecology1872ndash86httpsdoiorg10155616820171819
Erős T Takaacutecs P Specziaacuter A SchmeraD amp Saacutely P (2017) Effectof landscapecontextonfishmetacommunitystructuringinstreamnetworksFreshwater Biology62215ndash228httpsdoiorg101111fwb12857
FalkeJAampFauschKD(2010)Frommetapopulationstometacom-munities linking theorywith empirical observations of the spatialpopulationdynamicsofstreamfishesInAmericanFisheriesSocietySymposium(Vol73pp207ndash233)
FernandesIMHenriques-SilvaRPenhaJZuanonJampPeres-NetoPR(2014)Spatiotemporaldynamicsinaseasonalmetacommunitystructure is predictable The case of floodplain-fish communitiesEcography37464ndash475
Gleason H A (1926) The individualistic concept of the plant asso-ciation Bulletin of the Torrey Botanical Club 53 7ndash26 httpsdoiorg1023072479933
Heino JMeloASampBiniLM (2015)Reconceptualising thebetadiversity-environmental heterogeneity relationship in runningwater systems Freshwater Biology 60(2) 223ndash235 httpsdoiorg101111fwb12502
HeinoJMeloASSiqueiraTSoininenJValankoSampBiniLM(2015) Metacommunity organisation spatial extent and dispersal
in aquatic systems Patterns processes and prospects Freshwater Biology60845ndash869httpsdoiorg101111fwb12533
Landeiro V L Magnusson W E Melo A S Espiacuterito-Santo H MV amp Bini L M (2011) Spatial eigenfunction analyses in streamnetworks Do watercourse and overland distances produce dif-ferent results Freshwater Biology 56 1184ndash1192 httpsdoiorg101111j1365-2427201002563x
LegendrePLegendreLampLegendreP(2012)Numerical ecology 3rd EnglishedPierreLegendreandLouisLegendreAmsterdamBostonElsevier
LeiboldMAHolyoakMMouquetNAmarasekarePChaseJMHoopesMFhellipGonzalezA(2004)ThemetacommunityconceptAframeworkformulti-scalecommunityecologyEcology Letters7601ndash613httpsdoiorg101111j1461-0248200400608x
LeiboldMAampMikkelsonGM(2002)Coherencespeciesturnoverand boundary clumping Elements of meta-community structureOikos 97 237ndash250 httpsdoiorg101034j1600-07062002 970210x
Logue J B Mouquet N Peter H Hillebrand H amp TheMetacommunityWorkingGroup (2011)Empirical approaches tometacommunities A review and comparisonwith theoryTrends in Ecology amp Evolution 26 482ndash491 httpsdoiorg101016jtree201104009
Loacutepez-GonzaacutelezCPresleySJLozanoAStevensRDampHigginsCL(2012)MetacommunityanalysisofMexicanbatsEnvironmentallymediatedstructure inanareaofhighgeographicandenvironmen-tal complexity Journal of Biogeography 39 177ndash192 httpsdoiorg101111j1365-2699201102590x
MacarthurRampLevinsR (1967)The limitingsimilarityconvergenceanddivergenceofcoexistingspeciesThe American Naturalist101377ndash385httpsdoiorg101086282505
Meynard C N Lavergne S Boulangeat I Garraud L Van Es JMouquetNampThuillerW(2013)Disentanglingthedriversofmeta-community structure across spatial scales Journal of Biogeography401560ndash1571httpsdoiorg101111jbi12116
MontantildeaCGWinemillerKOampSuttonA(2014)IntercontinentalcomparisonoffishecomorphologyNullmodeltestsofcommunityassembly at thepatch scale in riversEcological Monographs84(1)91ndash107httpsdoiorg10189013-07081
MonteiroVFPaivaPCampPeres-NetoPR (2017)Aquantitativeframework to estimate the relative importance of environmentspatial variation and patch connectivity in driving communitycomposition Journal of Animal Ecology 86 316ndash326 httpsdoiorg1011111365-265612619
Mouillot D Dumay O amp Tomasini J A (2007) Limiting similaritynichefilteringandfunctionaldiversityincoastallagoonfishcommu-nitiesEstuarine Coastal and Shelf Science71443ndash456httpsdoiorg101016jecss200608022
Patterson B D amp Atmar W (1986) Nested subsets and thestructure of insular mammalian faunas and archipelagosBiological Journal of the Linnean Society 28 65ndash82 httpsdoiorg101111j1095-83121986tb01749x
Pease A A Gonzaacutelez-Diacuteaz A A Rodiles-Hernaacutendez R ampWinemiller K O (2012) Functional diversity and traitndashenviron-ment relationships of stream fish assemblages in a large tropi-cal catchment Freshwater Biology 57 1060ndash1075 httpsdoiorg101111j1365-2427201202768x
Peres-Neto P R amp Legendre P (2010) Estimating and con-trolling for spatial structure in the study of ecological commu-nities Global Ecology and Biogeography 19 174ndash184 httpsdoiorg101111j1466-8238200900506x
Peres-NetoPRLegendrePDraySampBorcardD(2006)VariationpartitioningofspeciesdatamatricesEstimationandcomparisonoffractionsEcology872614ndash2625httpsdoiorg1018900012-9658(2006)87[2614vposdm]20co2
emspensp emsp | emsp379LOacutePEZ- DELGADO Et AL
Presley S J Higgins C L ampWillig M R (2010) A comprehensiveframework for the evaluation ofmetacommunity structureOikos119908ndash917httpsdoiorg101111j1600-0706201018544x
Presley S J amp Willig M R (2010) Bat metacommunity structure on Caribbean islands and the role of endemics Global Ecology and Biogeography19185ndash199httpsdoiorg101111j1466-82382009 00505x
RCoreTeam (2017)R A language and environment for statistical com-puting Vienna Austria R Foundation for Statistical ComputingRetrievedfromhttpwwwR-projectorg
RobertsDW (2007) labdsvOrdinationandmultivariateanalysis forecologyR package version1(1)
SharmaSLegendrePDeCaacuteceresMampBoisclairD(2011)Theroleofenvironmentalandspatialprocessesinstructuringnativeandnon-native fish communities across thousands of lakes Ecography 34762ndash771httpsdoiorg101111j1600-0587201006811x
SimberloffD(1983)Competitiontheoryhypothesis-testingandothercommunityecologicalbuzzwordsThe American Naturalist122626ndash635httpsdoiorg101086284163
Soininen J (2014) A quantitative analysis of species sorting acrossorganisms and ecosystems Ecology 95 3284ndash3292 httpsdoiorg10189013-22281
SoininenJ(2016)SpatialstructureinecologicalcommunitiesmdashAquan-titative analysis Oikos 125 160ndash166 httpsdoiorg101111oik02241
TerBraakCampŠmilauerP (2012)Canoco reference manual and userrsquos guide Software for ordination (version 50)IthacaNYMicrocomputerPower
Tilman D (1982) Resource competition and community structure PrincetonNJPrincetonUniversityPress
Tonkin J D Stoll S Jaumlhnig S C amp Haase P (2016) Elements ofmetacommunity structure of river and riparian assemblagesCommunities taxonomic groups and deconstructed trait groupsEcological Complexity 25 35ndash43 httpsdoiorg101016jecocom201512002
TorresKMMampHigginsCL (2016)Taxonomicandfunctionalor-ganizationinmetacommunitystructureofstream-fishassemblagesamongandwithinriverbasinsinTexasAquatic Ecology50247ndash259httpsdoiorg101007s10452-016-9572-5
TrujilloFampLassoCA(2017)IVBiodiversidaddelriacuteoBitaVichadaColombia Serie Editorial Fauna Silvestre Neotropical (p 349)BogotaColombiaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtFundacioacutenOmacha
Vitorino-JuacuteniorOBFernandesRAgostinhoCSampPeliciceFM(2016) Riverine networks constrain β-diversity patterns amongfishassemblagesinalargeNeotropicalriverFreshwater Biology611733ndash1745httpsdoiorg101111fwb12813
Willig M R Presley S J Bloch C P Castro-Arellano I CisnerosL M Higgins C L amp Klingbeil B T (2011) Tropical metacom-munities along elevational gradients Effects of forest type andother environmental factors Oikos 120 1497ndash1508 httpsdoiorg101111j1600-0706201119218x
WillisSWinemillerKampLopez-FernandezH (2005)Habitatstruc-turalcomplexityandmorphologicaldiversityoffishassemblagesinaNeotropicalfloodplainriverOecologia142284ndash295httpsdoiorg101007s00442-004-1723-z
WinemillerKOFleckerASampHoeinghausD J (2010)Patchdy-namicsandenvironmentalheterogeneityinloticecosystemsJournal of the North American Benthological Society29 84ndash99 httpsdoiorg10189908-0481
SUPPORTING INFORMATION
Additional supporting information may be found online in theSupportingInformationsectionattheendofthearticle
How to cite this articleLoacutepez-DelgadoEOWinemillerKOVilla-NavarroFADometacommunitytheoriesexplainspatialvariationinfishassemblagestructureinapristinetropicalriverFreshw Biol 201964367ndash379 httpsdoiorg101111fwb13229
emspensp emsp | emsp369LOacutePEZ- DELGADO Et AL
Fernandes Agostinho amp Pelicice 2016) Brown and Swan (2010)foundthatprocessesstructuringaquaticcommunitiesdifferedde-pendingonthenetworklocation(headwatersstreamsversusmainstem)Headwaters streamsare relatively isolatedwithin rivernet-workspossesshighhabitatheterogeneityandtendtohavestrongdisturbance regimes Patch dynamics may dominate metacom-munity dynamics under these conditions (Winemiller Flecker ampHoeinghaus2010)Converselyhabitatsinlowerreachesaremuchless isolated with greater potential for dispersal conditions thatshould facilitate species sorting and themass effect Communitystructure along river longitudinal gradients also couldbe affectedbytheunidirectionalflowofwaterDatryetal(2016)inferredthatspeciesdiversityincreasesfromupstreamtodownstreamduetothecombinedeffectofheadwaterisolationandwaterflowlimitingup-streamdispersal
Relatively few investigations have examined metacommunitypatternsalonglongitudinalfluvialgradients(AlmeidaampCetra2016Carvajal-Quintero etal 2015 Datry etal 2016 Vitorino-Juacutenioretal2016)andevenlessresearchhasbeenconductedinrelativelypristine riverswith catchments lacking significanthuman impactsKnowledge gained fromunperturbed systems enables predictionsabout future impacts to biodiversity and can help to guide con-servationandrestorationeffortsforriversthathavealreadybeendegraded
Weinvestigatedspatialvariationinfishassemblagestructurealong the longitudinal fluvialgradientof theBitaRiver anearlypristine tributary of the Orinoco River in the Llanos region ofColombiaWeanalysedfishspeciesdistributionsacrossthelongi-tudinalgradientinanefforttorevealrelativeinfluencesofabioticenvironmental and spatial factors and to infermetacommunitymodelsthatmayaccountforpatternsWepredictedthatatthebasin-scaledispersalratesaresufficiently lowtoallowlocalas-semblages to track spatial environmental variation (eg speciessorting)withamajorfractionofvariationinstructureexplainedbyapureenvironmentaleffect(HeinoMeloampBini2015HeinoMelo Siqueira etal 2015) Given that environmental condi-tions should have greater variation over broader spatial scalesmetacommunity patterns should reveal high turnover and fairlydiscrete local assemblageswithaClementsiandistributionAt amoreregionalscale(localitieswithinariversection)assemblagesinupstreamanddownstreamregionsmayreflectdifferentmeta-communityprocessesBecauseheadwaterstreamsarerelativelyisolatedwithintherivernetwork theyshouldreceivefewermi-grantsandmayhavelocalassemblagesstronglyinfluencedbylocalenvironmental conditions and species sorting Metacommunitypatterns of headwaters should reveal high turnover with threepossible distributional patterns Clementsian Gleasonian orevenlyspacedConversely sites locateddownstreamandclosertotherivermouthshouldbeinfluencedbyhighdispersalresult-inginagreaterimportanceofspatialfactorsandthemasseffectIn the downstream section in-channel environmental variationwillbelowerandmetacommunitypatternsmaybenestedalongthelongitudinalgradient
2emsp |emspMETHODS
21emsp|emspStudy area
TheBitaRiverBasinislocatedintheeasternplainsoftheColombianLlanos in theVichadadepartmentdraininganareaof812312haflowingeastroughly700kmtotheOrinocoRiverAsinmostnaturaldrainagesystemsstreamenvironmentalcharacteristics intheBitaBasinvaryalongthelongitudinalgradientMostheadwaterstreamsbeginatanelevationof300mabovesealevelThemiddleandlowersectionsare characterisedbyabroad sinuouschannel and flood-plainswithnumerouslagoonsandseasonallyfloodedforestsandsa-vannasTheaverageelevationalgradientislow(0357mkm)withtheriverenteringtheOrinocoRiveratanelevationof50mabovesea level near the municipality of Puerto Carrentildeo Riparian veg-etationiscomprisedofdensegalleryforestsdominatedbyCaraipa llanorum (Calophyllaceae) Astrocaryum jauari (Arecaceae) andParahancornia oblonga (Apocynaceae) and savannasdominatedbyAxonopus ancepsPanicum cayennense (Poaceae)Bulbostylis capilla-risCyperus haspanRhynchospora cephalotes(Cyperaceae)Caladium macrotites (Araceae) and C llanorum (Calophyllaceae) (Trujillo ampLasso2017)Themainriverandstreamscontainmultiplehabitatsthatvarymainly insubstratecompositionriparianvegetationanddepthDuringMayndashNovembertheriverfloodsadjacentareascre-atingcomplexanddiversehabitatsAverageairtemperatureintheregion is27degCandaverageannualprecipitation is2300mmwithmostrainfallfromMaytoAugust(TrujilloampLasso2017)
Twofieldexpeditionseachofwhich lasted30dayswereper-formedduringJanuaryandMarch2016whenlow-waterconditionsfacilitateefficientcaptureoffishesandrelationshipsbetweenfishassemblagestructureandhabitatshouldbestrongest(Peaseetal2012)Weselected34surveysitesdistributedalongtheentirebasin(E1uppermosttoE34lowest)followingtheriverrsquoslongitudinalgra-dient(SupportingInformationTableS1)Thebasinwasdividedintofoursections(highmidndashhighmidndashlowlow)usingthelineardistanceofthebasin(265km)divideditbythenumberofsections(four)Thisvalue(665km)wasusedtodefinethedistancebetweeneachsec-tionalongthelongitudinalgradient(Figure1)
22emsp|emspFish surveys
At each survey sitewe selected a 200-m reach encompassing allapparentmacrohabitatstocollectfishesanddataforlocalenviron-mental variables Fishes were collected using a seine (10times15m3-mmmesh)andtwogillnets(10times2m100-mmmesh)Withineachstudyreachsixseinehaulsof20mwereperformedandthegillnetwasdeployed for2hrAfter fisheswere removed fromnets theywere anaesthetised according to an approved TexasAampMuniver-sityanimaluseprotocol (IACUC2015-0360)by immersion in tric-aine methane sulfonate (MS-222) and euthanised in an overdoseofMS-222Specimenswere fixed in10formalin transported tothelaboratoryandtransferredto70ethanolforpreservationAllspecimenswereidentifiedcataloguedanddepositedinthevoucher
370emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
collectionsoftheUniversidaddelTolimaandInstitutovonHumboldtinColombia
23emsp|emspEnvironmental variables
Environmentalvariablesweredividedintosixcategorieswaterpa-rameters substrate instream cover channelmorphology local ri-parianbufferandlandscapevariablesfollowingPeaseetal(2012)(SupportingInformationTableS2)Priortofishsamplingwaterqual-ity parameters such as pH conductivity (μS) water temperature(degC)dissolvedoxygen(mgL)andtotalsolidsweremeasuredateachsurveysiteusingamultiparameterwaterqualitymeter (YSImodel85) To characterise substrate and instreamcover thepercentageof cobble (diameter6ndash25cm) sand (006ndash2mm)mud (lt006mm)filamentousalgaelargewoodydebris(gt50cm)smallwoodydebris(lt50cm)submergedrootsoverhangingterrestrialmaterialandleaflitterwerevisuallyestimatedalongthe200-mreachVariablessuchaswidthofriparianbuffer(m)areaoftheriparianforest(ha)andlandscape(presenceofroadscropsdistancetotheOrinocoRiverandaltitude)weremeasuredbygeoreferencedsatelliteimagesusing
ArcMap (Version1031) inacircularbufferof1kmStreamorderwascalculatedusingthefunctionstreamorderinArcMap(Version1031)methodStrahlerrsquosclassification
24emsp|emspData analysis
Analyses were performed at basin (number of sites=34) and re-gional scales Regional-scale datasets were grouped according tofoursectionsalongthelongitudinalfluvialgradient(highmidndashhighmidndashlow low)Thisapproachaimed toexplore thepossibility thatenvironmental or spatial variationwithin river sections influencesassemblage patterns according tometacommunity processes thatmay differ among sections Using the method of Dufrene andLegendre (1997) we calculated indicator values for species mostcommonwithinagivenriversectionThismethodisbasedonspe-ciesabundance(specificity)andfrequency(fidelity)atsurveysitesValuesfromthismethodrangefrom0to1with1beingaperfectindicator of a river section Significance of indicator values wasevaluatedusingthedifferencebetweentheobservedvalueandthemeanofvaluesobtainedfrom1000randompermutationsSpecies
F IGURE 1 emspMapoftheBitaRiverBasinshowingthefoursectionsandthe34surveysites
E1E2E3
E4
E9 E8E7E6
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6deg0
0N
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Casanare River
Meta River
Orin
oco
Riv
er
Bita River
BrazilPeru
Bolivia
Argentina
Colombia
Venezuela
ChileParaguay
Ecuador
GuyanaSuriname
Uruguay
French Guiana (France)
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E10
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E27E26E25E23E22
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E34E33
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Meta River
Mid_High
Mid_Low Low
Venezuela
Colombia
South America
ColombiaBita River
Bita River
Bita R
iver
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Bita River
Orin
oco
Riv
er
Bita river basin
0 40 8020 Kilometers
emspensp emsp | emsp371LOacutePEZ- DELGADO Et AL
indicator analysiswas performed using the function Indval of thepackagelabdsv(Roberts2007)intheRstatisticallanguage(Version341)(RCoreTeam2017)
25emsp|emspSpatial variables
Becausefishdispersalinriversisdifficulttoestimateweusedspa-tial predictors as proxies for dispersal potential Spatial eigenvec-torswereusedaspredictors to control for spatial autocorrelationandestimate the influenceof spatialdistanceon speciesdistribu-tionsandpatternsofassemblagestructure(Peres-NetoampLegendre2010) Spatial patternsweremodelled through asymmetric eigen-vectormaps (AEM)anapproachproposedbyBlanchetLegendreandBorcard(2008b)Thismethodtakesintoaccountthedirectionalaspectofinter-sitedistancesofsystemssuchasrivernetworks(egwaterflowrelativeposition)a limitationofmethodssuchasprin-cipal coordinates of neighbour matrices and Moranrsquos eigenvectormaps(BlanchetLegendreMarangerMontiampPepin2011SharmaLegendreDeCaacuteceresampBoisclair2011)
To perform theAEMwe used the distribution of sites acrossthebasintoconstructaconnectiondiagramthatlinkssitestooneanotheraccording topathwayswithin the rivernetwork (Figure1SupportingInformationTableS3)followingtheflowdirectionfromupstreamtodownstreamUsingtheconnectiondiagramasites-by-edgesmatrixwasconstructedandthismatrixwasusedtocalculateasymmetricalspatialeigenfunctionsthroughsingularvaluedecom-positionwhichwereused laterasspatialdescriptorsAEMeigen-functionswerecalculatedusingthefunctionaemfromthepackageadespatial inR (Version341) (Drayetal2017)Toobtainanad-ditional spatial descriptorwemeasured thewatercourse distanceas thedistance fromeachpoint to the rivermouthalong thewa-tercourseusinggeoreferencedsatellite images inArcMap(Version1031)Thisvariableismorerelevanttofishdispersalthanstraight-linedistancethatincludesoverlandsegments(albeitsuchdispersalroutesarepossibleduringtheannualfloodpulse)
26emsp|emspElements of the metacommunity structure
Usingthesites-by-species incidencematrix (excludingrarespeciesthatoccurredatonlyonesite)asinputforRAEMSwereanalysedbasedonspeciesscoresonthefirsttwoaxesToevaluatepatternswithrespecttosixidealiseddistributionalpatterns(1)checkerboard(Diamond1975) (2)nestedsubsets (PattersonampAtmar1986) (3)Clementsian (Clements 1916) (4) Gleasonian (Gleason 1926) (5)evenlyspaced(Tilman1982)and(6)random(Simberloff1983)wefollowedtheframeworkproposedbyLeiboldandMikkelon(2002)andPresleyetal(2010)
Coherencewasassessedbycalculatingthenumberofgapsinspeciesrange(observedabsences)fromtheorderedmatrixfromRAStatisticalsignificanceofcoherencewasevaluatedusingthez-score test comparing observed absenceswith those expectedbasedon1000randomisedsimulationsWheneverobservedab-sencesaregreaterthanexpected(negativecoherence)thereisa
checkerboardpatternConversely ifobservedabsencesare lessthanexpectedunderthenullmodel(positivecoherence)theanal-ysis tests forevidenceofspeciesturnoverandboundaryclump-ing No significant difference between observed and expectedabsences indicates randomdistributions (no coherence) (LeiboldampMikkelson2002)
TurnoverwasevaluatedbycalculatingthenumberofspeciesreplacementsbetweensitesWeusedaz-score test tocompareobserved species replacements with the mean for species re-placements obtained from 1000 null simulations Significantlyfewerobservedreplacementsare indicativeof lowturnoveranddistributionsthatarenestedsubsetswhereasmoreobservedre-placementsindicatehighturnoverFinallyboundaryclumpingwasevaluatedusingMorisitarsquosindexforwhichavalueofoneindicatesthatboundariesarenotclumpedvalueslt1indicateclumpingandlt1indicateshyperdispersionStatisticalsignificanceofMorisitarsquosindexwasdeterminedusingtheχ2 testMore informationaboutinference of idealised patterns can be found in fig1 of Presleyetal(2010)
Weappliedafixedproportionalnullmodel(ier1 null model in MetacommunityfunctioninR)totestsignificanceofcoherenceandturnoverThisnullmodelmaintainsspeciesrichnessofeachsamplingsite but fills species ranges based on theirmarginal probabilitiesRandomsimulatedmatriceswerecalculatedusing1000simulations(Dallas2014)EMSwereassessedusingtheMetacommunity func-tionoftheMetacompackage(Dallas2014)inR
27emsp|emspVariation partitioning
Weusedvariationpartitioninganalysis(Peres-Netoetal2006)asanadditionalmeanstoidentifymetacommunitytypesandtoassesstherelativecontributionofenvironmentalandspatialpredictorsonfishdistributionsatbasinandregionalscalesThismethodallowedus to determine the contribution of environmental conditions in-dependentofspaceandvice versacontrollingfortypeIerrorasaproductofspatialautocorrelationintheenvironmentalcomponent(Peres-NetoampLegendre2010)Type I errormay lead to spuriousconclusions generating significant speciesndashenvironment relation-ships thatareartefactsPartitioninganalysiswasconductedusingthe adjusted R-squared in redundancy analysis on the Hellinger-transformedspecies-by-sitesabundancematrixandtwosetsofpre-dictorsenvironment[E]andspace[S]
To create each set of predictors firstwe reduced the num-berofvariablesineachmatrixbecausetheyreducethestatisticalpowerofthetesttoidentifyuniqueandsignificantenvironmentalandspatialcontributions(Peres-NetoampLegendre2010)Weper-formedavariableselectionforeachsetofpredictorsto identifysignificantvariables(plt05)associatedwiththespecies-by-sitesabundancematrixForthe[E]matrixwetransformedtheenviron-mentalvariablesduetononhomogeneousunitsandverifiedthatthedistributionwasnormalThosevariablesexpressedaspropor-tionsweretransformedtothearcsineoftheirsquarerootThere-mainingvariableswerelog(x+1)transformedwiththeexception
372emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
ofordinal andcategoricaldata forwhichno transformationwasdone Data for all variables were standardised and centred bycalculating z-scores (mean=0 standard deviation=1) (BorcardGilletampLegendre2011FalkeampFausch2010)Thefunctionfor-wardselfromtheRlibraryadespatial(Drayetal2017)wasusedtoperformvariableselectionusing999permutationswithasig-nificance level of p=05Selectedvariablescomprisedtheenvi-ronmentalmatrix[E]usedforthepartitionanalysis
Spatial predictors from the AEM analysis and inter-site dis-tancedataweretestedforinclusioninthespatialmatrix[S]usingtheforwardselfunctionoftheRlibraryadespatialusingthesameapproachasdescribedforthe[E]matrixSelectedvariableswereincludedinthe[S]matrixforthepartitioninganalysisFinallywithourthreedatasets(Hellinger-transformedsites-by-speciesmatrix[E]and [S])weapplied thevarpart functionof thevegan libraryin R to perform variation partitioning analysis as proposed byBlanchetLegendreandBorcard(2008a)andBorcardetal(2011)
Thesignificancelevelsofthecomponentsproducedbythevari-ation partitioning were used to classify the fish metacommunityaccording to one of the four metacommunity paradigms speciessorting mass effect neutral model and patch dynamics (Leiboldetal2004)TochoosetheproperparadigmweappliedthedecisiontreeproposedbyCottenie(2005)
28emsp|emspDrivers of metacommunity structure
We used two approaches to identify the underlying environmen-talandspatialfactorsthatcorrelatewithobservedpatterns inthemetacommunityorganisationat thebasinandregional levelFirstwecalculatedSpearman-rankcorrelationsbetweenthetwodomi-nantaxesextractedfromtheRAused in theEMSframeworkandeachvariablefromthesetofenvironmentalandspatialpredictorsSecond a variable selection procedure was performed for eachgroup (environmentalandspatial)usingthe forwardsel functionoftheRlibraryadespatialCorrelationswerecalculatedusingthefunc-tioncortestofthestatslibraryinR
3emsp |emspRESULTS
High and midndashhigh sections were characterised by higher valuesofdissolvedoxygenelevationdistance fromthemainsourcesa-vannaareaflowandpercentagesofgrassesandfilamentousalgae(Supporting Information Table S2) Channel width water tem-perature and total solids tended tobe lower atupper-basin sitesSubstratumandinstreamcoverwereheterogeneouswithinallfoursectionsSiteslocatedinthelowersectionstendedtohavemoreex-tensiveriparianforestmorelagoonsinadjacentfloodplainswiderchannelsandlowerflowvelocity(SupportingInformationTableS2)
A total of 25928 fish specimens representing 201 species 39familiesand10orderswerecollectedduringthestudySixtyspecieswerecollectedinthehighsection148inthemidndashhigh142inthemidndashlowand67inthelowsectionAveragenumberofspecimenspersite
was762andspeciesrichnessvariedfrom4to55ThemostabundantspecieswereAmazonprattus scintilla(Engraulidae)andtwospeciesofthegenusHemigrammus(Characidae)H elegans and H geisleriThesethreespeciesrepresentednearly30ofthecollectedfishspecimens(Supporting Information Table S4) Fifty-one rare species were col-lectedatsinglesitesSeveralspecieswereidentifiedasindicatorsforthe low (12spp)andhigh (sixspp) sectionsandfewornonewereidentifiedforthemidndashhigh(onesp)andlow(0sp)sections(Table1)
31emsp|emspElements of metacommunity structure
Atthebasinscale(34sites)theEMSrevealedpositivecoherencewithaClementsiandistributionalongbothof thedominantaxesmodel-ling gradientsof fish assemblage structure (RA1andRA2) (Table2Figure2)Thusatabroadspatialscalespeciesseemtorespondasgroupstoenvironmentalfactorsleadingtorelativelydiscreteassem-blagesalongthelongitudinalgradientTheClementsianpatterniden-tified forRA1waspositively correlatedwithchannelwidth streamorderandspatialpredictors(AEM21AEM25)andnegativelycorre-latedwithvariablesassociatedtosubstrateinstreamcoverandlocalriparianvegetation(Table3)ForRA2onlythespatialpredictorAEM1(positive)andflow(negative)werecorrelatedwithsitescores(Table3)
Metacommunitystructurewasanalysedforsiteswithineachof the foursectionsalongthe longitudinal fluvialgradient (highmidndashhighmidndashlowandlow)Assemblagesinthehighandlowsec-tionshadnegativecoherenceandarandompatternforbothRAaxes in thehighsectionandRA1 in the lowsectionRA2 in the
TABLE 1emspSummaryoftheindicatorspeciesanalysisforeachsectionintheBitaBasin
Species Section Indicator value
Hemigrammus schmardae High 059
Parotocinclus eppleyi High 040
Ammocryptocharax elegans High 040
Farlowella vittata High 038
Mastiglanis asopos High 037
Phenacorhamdia anisura High 035
Steindachnerina argentea Midndashhigh 048
Nannostomus unifasciatus Low 089
Microphilypnus ternetzi Low 084
Hemigrammus elegans Low 083
Apistogramma minima Low 066
Brittanichthyssp Low 061
Curimatopsis evelynae Low 060
Hemigrammus analis Low 060
Acaronia vultuosa Low 059
Hemigrammus rhodostomus Low 058
Ochmacanthus alternus Low 058
Acestrorhynchus minimus Low 057
Hemigrammus barrigonae Low 033
Onlyspecieswithstatisticallysignificantvalues(plt005)arelisted
emspensp emsp | emsp373LOacutePEZ- DELGADO Et AL
TABLE 2 emspResultsofEMSanalysisoffishmetacommunitystructureattheleveloftheentireBitaBasinandattheregionallevelforhighmidndashhighmidndashlowandlowsectionsoftheriver
Axis of variation Basin High Midndashhigh Midndashlow Low
Species 145 37 84 85 55
Sites 34 5 12 14 3
Primaryaxis
Coherence
Observedabsences 2506 55 318 453 14
Expectedabsences 3032 41 445 554 14
p-value lt0001 0127 lt0001 0001 09
Turnover
Observedreplacements 347752 543 20498 27534 630
Expectedreplacements 186586 624 14397 20631 621
p-value lt0001 015 lt0001 lt0001 089
Clumping
Morisitarsquosindex 158 102 137 114 1
p-value lt0001 017 lt0001 lt0001 gt0999
Best-fitpatterns Clementsian Random Clementsian Clementsian Random
Secondaryaxis
Coherence
Observedabsences 2706 40 383 541 22
Expectedabsences 3030 4032 447 557 13
p-value 0001 096 003 064 0007
Turnover
Observedreplacements 366210 597 19630 14070 377
Expectedreplacements 186480 622 14397 20697 541
p-value lt0001 065 lt0001 lt0001 0004
Clumping
Morisitarsquosindex 155 136 137 117 1
p-value lt0001 0004 lt0001 lt0001 gt0999
Best-fitpatterns Clementsian Random Clementsian Random Nesteddistribution
Statisticallysignificantvalues(plt005)areshowninboldtype
F IGURE 2 emspSpeciesdistributionsamong34sitesintheBitaBasinorderedaccordingtoscoresonthefirstaxisofthereciprocalaveragingrevealingaClementsiangradientSitesareinrowsspeciesareincolumns
E16E8E7
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E13E6
E29E28E19
Species
AbsencePresence
374emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
lowsectionrevealedanesteddistributionNosignificantcorrela-tionsbetweenassemblagestructureandenvironmentalorspatialfactorswerefoundforthehighandlowsections(Tables2and3Figure3)
Midndashhigh and midndashlow sections displayed Clementsian pat-terns of assemblage structure for both the first and second RAaxes For the midndashhigh section no significant correlations wereobtained between RA1 and environmental or spatial variableshoweverRA2waspositivelycorrelatedwiththepresenceofroadsandthespatialpredictorAEM1(Tables2and3Figure3)ForthemidndashlowsectionRA1waspositivelycorrelatedwithsubstrateandinstreamcoverandRA2withthespatialpredictorAEM1(Tables2and3Figure3)
32emsp|emspVariation partitioning analysis
Atthebasinscaleallthecomponentsfromvariationpartitioning(ESE+SE|SS|E)explainedsignificant(plt05)variationinfishassem-blagestructuresupportingtheideathatmetacommunitydynamicsinfluencepatternsat that scale (Table4)Around19of the totalexplainedvariation (E+S)wasmodelledbythecombined influenceofenvironmentandspatialpredictors69byapureenvironmentalcomponent(E|S)and46byapurespatialcomponent(S|E)Eighty-onepercentofthevariationwasunexplainedEnvironmentalvaria-tionatthebasinscalewassignificantlyinfluencedbypercentageof
mudsubstratesmallwoodydebrisandwaterconductivity(Table4)Onlyfourof33spatialpredictorsweresignificant(AEM1AEM16AEM18AEM21Table4)
Attheregionalscalethenumberofsiteswithinthehighandlow sections was too small for statistical analysis and only themidndashhigh and midndashlow sections were analysed Only the envi-ronmental component (E) explained significant variation in fishassemblagestructurewithineachofthesesections(Table4)indi-catingthatitwasnotpossibletoinferanymetacommunitymodelIn themidndashhigh section a significant environmental componentinfluenced most strongly by percentage of mud substrate andsmallwoodydebrisexplained16ofassemblagevariationInthemidndashlow section 14of assemblage variationwas explainedbyan environmental componentwith conductivity andpercentageofsmallwoodydebrismostinfluential
33emsp|emspDrivers of fish community structure
The set of variables selected by variation partitioning includedmostof theones thathadhighestSpearman rankcorrelationsAtthe basin level environmental variables related to substrate andinstream coverwere identified by bothmethods (Tables3 and 4)EnvironmentalpredictorssuchaspercentagesofmudsubstrateandsmallwoodydebrisandthespatialpredictorAEM1weresignificantatbothbasinandregionalscales(Tables3and4)
TABLE 3emspSpearman-rankcorrelationsbetweenpredictorsandscoresobtainedfromthefirsttwoaxesfromthereciprocalaveragingordinationofthesites-by-speciesincidencematrixintheelementsofmetacommunitystructureframework
Variables
Basin Midndashhigh Midndashlow
r p r p r p
Primaryaxis
()Mud minus055 lt001 061 002
()Largewoodydebris minus048 lt001
()Smallwoodydebris minus048 lt001 055 004
()Submergedroots minus048 lt001 061 002
()Streamshadedbytreecanopy minus047 lt001 061 002
Width 037 003
Streamorder 052 lt001
AEM21 039 002
AEM25 039 002
Secondaryaxis
()Mud minus071 001
()Largewoodydebris minus066 002
()Smallwoodydebris minus075 lt001
()Streamshadedbytreecanopy minus075 lt001
Flow minus047 lt01
Neartoroads 066 002
AEM1 051 lt01 06 004 069 001
Onlystatisticallysignificantvalues(plt005)areshownNosignificantcorrelationswerefoundforhighandlowsectionsAEMasymmetriceigenvectormaps
emspensp emsp | emsp375LOacutePEZ- DELGADO Et AL
F IGURE 3 emspSpeciesdistributionswithinfourriversectionsorderedaccordingtoscoresonthefirstreciprocalaxis
High
E5
E2
E4
E3
E1
Species
Midminushigh
E16
E8
E7
E9
E14
E17
E10
E15
E12
E11
E13
E6
Species
Midminuslow
E30E20E24E18E26E27E31E25E21E23E22E29E28E19
Species
Low
E33
E34
E32
Species
Absence
Presence
Component
Bita basin Midndashhigh Midndashlow
AdjR2 p AdjR2 p AdjR2 p
E 014 0001 016 0007 014 0002
S 012 0001 000 05 000 056
E+S 019 0001 018 02 014 013
E|S 0069 0001 020 03 016 016
S|E 0046 0025 002 06 000 051
b 0075
R 081 082 086
Variablesselected Mud[E] Smallwoodydebris[E] Conductivity[E] AEM1[S] AEM16[S] AEM18[S] AEM21[S]
Mud[E] Smallwoodydebris[E]
Conductivity[E] Smallwoodydebris[E]
AEMasymmetriceigenvectormapsAdjR2adjustedR2forthepercentageofvariationEenviron-mentalvariationSspatialvariationE+STotalexplainedvariationE|SPureenvironmentalvaria-tion S|E Pure spatial variation b Variation shared by environmental and spatial factorsRUnexplainedvariation(residual)Significantvalues(plt005)areshowninbold
TABLE 4emspVariationpartitioninganalysisforfishassemblagesandselectedgroupsofenvironmentalandspatialvariablesatbasinandregionalscales
376emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
4emsp |emspDISCUSSION
In this study we applied complementary statistical analyses toinvestigate fish species distributions and variation in assemblagestructureacrossalongitudinalfluvialgradienttorevealtherelativeinfluenceoffactorsassociatedwithenvironmentalconditions(eghabitat features environmental filtering) and spatial relationshipsinfluencingdispersalResultsfromtheseanalysesprovidedabasistoinfertherelativeinfluenceofbiotic interactionsandstochasticprocessesincommunityassemblyattwospatialscalesOurresultssuggest that the fishmetacommunity in theBitaRiver exhibits aClementsiandistributionimplyingthatspeciesrespondtotheen-vironmental and fluvial gradient as groups with fairly consistentcompositions (Clements1916)Thispatternalso impliesapoten-tialeffectofenvironmentalfilteringatthescaleoftheentirebasinSimilarlythevariationpartitioninganalysisshowedthatthevaria-tion explainedby the pure environmental componentwas higherthanthepurespatialcomponentwhichalsoisconsistentwithspe-ciessortingSpeciessortingoccurswhenorganismsselecthabitatsthat convey relativelyhigh fitness andor avoidor areotherwiseeliminatedfromhabitatsthatreducetheirfitness(Soininen2014)Thesefindingssupportourpredictionthatatthebasinscaledis-persalratesarelowandassemblagestructureisstronglyinfluencedbyspeciessorting
Ourregional-scaleresultsalsorevealedaClementsiandistribu-tionoflocalassemblagecompositionThispatterncouldhavebeencausedbyspeciesresponsestospatialvariationofabioticandbioticenvironmentalfactorsSpearmancorrelationbetweenenvironmen-talvariablesandsitescoresongradientsofassemblagevariationin-dicatedthatstreamorderandchannelsizehadstrongassociationswithlocalassemblagestructureVariablesassociatedwithsubstratecomposition and instream cover also had significant associationsFishes in theBitaRiver apparently respond to theseenvironmen-talvariablesasrelativelyclumpedgroupsClementsianassemblagestructure has been found in plants (Meynard etal 2013 Willigetal2011)mammals(Loacutepez-GonzaacutelezPresleyLozanoStevensampHiggins 2012PresleyampWillig 2010) andvarious freshwateror-ganismsincludingplanktonmacroinvertebratesandfish(DallasampDrake2014Erősetal2017FernandesHenriques-SilvaPenhaZuanonampPeres-Neto2014TonkinStollJaumlhnigampHaase2016TorresampHiggins2016)
Weproposed that somemetacommunity processes and resul-tantpatternswouldnotbethesameattwodifferentspatialscalesofanalysisWefoundpositivecoherenceandturnoverinupstreamregionsandpositivecoherenceandnegativeturnoverwithnesteddistributionsindownstreamregionsThesepatternswerenotpre-dicteda prioriAttheregionalscaleaClementsiandistributionwasfoundonlyinthemidndashhighandmidndashlowsectionsofthebasinsug-gesting that species responded as groups to environmental filtersmore strongly in these middle sections of longitudinal gradientAssemblage coherence was non-significant (ie not statisticallydifferent from a random distribution) for the high and low sec-tionsoftheriverAccordingtoPresleyetal(2010)non-significant
coherence is not always an indicatorof randomstructuresDallasandDrake(2014)foundthatinmoststudiesinwhichrandompat-ternswerefoundsamplescontainedfewspeciesfewsitesorbothand therefore therewas not enough statistical power to test co-herenceusing randomisationprocedures Inourstudy therewerefewersurveysitesforthehighestandlowestsectionsoftheriverwhichmayaccountfornon-significantcoherenceinthosesectionsNonethelessFigure3revealsapatternofspeciesdistributionwithhigh turnover and boundary clumping in the high section such apatternislessdiscernibleforthelowsection
Inthelowsectionoftheriverdistributionpatternswerediffer-ent for the twoassemblageordinationaxesRandomdistributionswere inferredbasedon the firstordinationaxisandnesteddistri-butionswerefoundforthesecondaxisResultsofthesecondaxissupport our hypothesis that environmental gradients over smallerspatial scales in the low sectionmay promote nested distributionpatternsSitesinthissectionwerecharacterisedbysubstratescom-prised almost entirely of sandwith patches of leaf litter and lowvariation inwater physicochemistryDistribution patternsmay bemorelikelytobenestedwhensamplesizeissmallandenvironmen-talgradientsareshort(Tonkinetal2016)ConverselylargesamplesizesandlongenvironmentalgradientsmayincreasethelikelihoodoffindingClementsianandGleasonianpatterns
At the basin scale the total variation in assemblage structurecapturedbythemodel(19)wasdecomposedinto69purelyen-vironmental 75 shared by environmental and spatial and 46purelyspatialcomponents(eachfractionwithplt0001)Thepureenvironmental component was strongly associated with the per-centage of mud substrate small woody debris and conductivitySharedenvironmentalandspatialfactorsalsowereassociatedwiththepercentageofmudandconductivityThepure spatial compo-nentwas represented by eigenvectors fromAEM predictors thatare not easily interpretable because they integrate multiple spa-tial scales (Peres-Netoamp Legendre 2010)with small-scale spatialvariables tending tobeassociatedwithmasseffectdynamics andlarge-scalespatialvariablestendingtobeassociatedwithdispersallimitation (HeinoMeloampBini2015HeinoMeloSiqueiraetal2015) At the scale of the entire basin both processes probablyoccursimultaneously
Thepercentageofvariationexplainedbyourpartitioninganal-ysiswas low(19)acommonfinding incommunityecologystud-ies (Castillo-Escrivagrave etal 2016 Devercelli Scarabotti MayoraSchneider amp Giri 2016 Erős etal 2017 Legendre amp Legendre2012TerBraakampŠmilauer2012)Thelargeamountofunexplainedvariationcouldbeduetoseveralfactorssuchasfailuretoincludeother relevant environmental variables and spatial predictors orvariablesrelatedtootherprocessessuchasbiotic interactionsOfcoursetherealsocouldbealargeinfluenceofstochasticdynamicsSoininen(2016)reviewed322datasetsandfoundthatspatialpredic-torsobtainedfromspatialeigenvectoranalysisgenerallyexplainedasmall fractionof totalassemblagevariationwhichsuggests thatspatialpredictors fromAEMmayperformpoorly incapturingpat-ternsreflectingdispersaldynamicsMonteiroetal(2017)proposed
emspensp emsp | emsp377LOacutePEZ- DELGADO Et AL
theuseofpatchconnectivitymetricsaspredictorsofdispersaldy-namicsratherthanspatialeigenvectorsTheyfoundthatthepatchconnectivityframeworkincreasedtheamountofexplainedvariationbyasmuchas50
Becausebothpureenvironmentalandpurespatialcomponentswere statistically significant both species sortingandmasseffectdynamics could have influenced fish assemblage structure at thebasin scale (Cottenie 2005) However because the proportionexplained by the pure environmental fractionwas larger than thespatialfraction(69versus46)speciessortingwasprobablythemoreinfluentialcomponentstructuringfishassemblagesinthissys-temTheseresultsareinaccordancewithHeinoMeloampBini(2015)whofoundthatanintermediateamountofdispersalwasneededforthespeciessortingprocesssincespeciesneedtodispersefromoneplace toanother searching forsiteswith theappropriateenviron-mentalconditionstothrive
Soininen(2014)reviewed326investigationsthatusedvariationpartitioning analysis finding that environmental variables usuallyexplainedthemostvariationinassemblagecompositionandspeciessortingwasmostofteninferredSpeciessortingmaybethepreva-lentmetacommunitymodel for river and stream fish assemblages(Cottenie2005FalkeampFausch2010HeinoMeloampBini2015HeinoMeloSiqueiraetal2015)
At a smaller spatial scale we predicted that species sortingstrongly influencesassemblages inheadwaterswherehabitatsarerelativelyisolatedwithintherivernetworkwhereasassemblagesindownstreamreacheswouldhavegreaterdispersalandbemorein-fluencedbymasseffectdynamicsThesepredictionswerenotcon-firmedBasedonvariationpartitioninganalysisandthedecisiontreeofCottenie(2005)noevidencewasobtainedtosupportanyofthemetacommunity paradigmsproposedby Leibold etal (2004) Thevariation partitioning procedure could only be performed for themidndashhighandmidndashlowsectionsthathadsufficientlylargesamplesOnlytheenvironmentalfractionwassignificantandthisresultcanbepronetotypeIerror
Insummaryvariationpartitioningandmetacommunitystructureanalysesprovidedcomplementaryfindingstoinferprocessesstruc-turingfishassemblagesintheBitaRiverBothapproachesidentifiedenvironmentalfilteringandspeciessortingastheprincipalstructur-ingprocessesinthissystemVariationpartitioninganalysisimpliedthatdispersalplaysasignificantroleatthebasinscalehowevertheenvironmentalfractionexplainedmorevariationBothanalysesre-vealedassemblagepatternscorrelatedwithcomponentsofhabitatstructureSimilarconclusionshavebeenreportedfromstudiescon-ducted at smaller spatial scales inother tropical rivers (ArringtonWinemillerampLayman2005WillisWinemillerampLopez-Fernandez2005)with some also inferring that biotic interactionsplay a sig-nificant role in structuring fish assemblages within local habitats(MontantildeaWinemillerampSutton2014) Inastudyof theCinarucoRiveranOrinocotributaryintheVenezuelanLlanoswithcharacter-isticssimilartotheBitaRiverWillisetal(2005)foundthathabitatstructural complexity was strongly correlated with the functionaldiversity of fish assemblages These findings combinedwith ours
suggest that fish community structure of Neotropical rivers andstreams is influencedby localenvironmentalconditionsespeciallyaspectsassociatedwithsubstrateandhabitatstructuralcomplexitythat in turnaffect species sorting that results inClementsianpat-ternsofspeciesdistribution Improvedunderstandingof the influ-enceofdispersalenvironmentalfilteringandbioticinteractionsonspeciesassemblagesinpristinesystemswillbeessentialforeffortstoconserveandrestorebiodiversityForexampleifthespatialdis-tributionoffishesintheBitaRiverderiveslargelyfromdispersalandenvironmental filtering then strategies to conserve fish diversitymustemphasisemaintenanceofhabitatheterogeneityandconnec-tivityatappropriatespatialandtemporalscales
ACKNOWLEDG MENTS
WethankWorldWildlifeFoundation(WWF)ColombiaFundacioacutenOmachaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtandUniversidaddelTolimaforlogisticsandfinancingpartof this studyWealsowould like to thankDTaphornCDoNascimentoJGAlbornozandDMontoyafortheirassistanceinthefieldandlaboratorywork
ORCID
Edwin O Loacutepez-Delgado httpsorcidorg0000-0002-4010-1880
R E FE R E N C E S
AlmeidaRSampCetraM(2016)Longitudinalgradienteffectsonthestream fishmetacommunityNatureza amp Conservaccedilatildeo14 112ndash119httpsdoiorg101016jncon201610001
ArringtonDAWinemillerKOampLaymanCA(2005)CommunityassemblyatthepatchscaleinaspeciesrichtropicalriverOecologia144157ndash167httpsdoiorg101007s00442-005-0014-7
BlanchetFGLegendrePampBorcardD (2008a)Forwardselection of explanatory variables Ecology 89 2623ndash2632 httpsdoiorg 10189007-09861
BlanchetFGLegendrePampBorcardD(2008b)Modellingdirectionalspatialprocesses inecologicaldataEcological Modelling215325ndash336httpsdoiorg101016jecolmodel200804001
BlanchetFGLegendrePMarangerRMontiDampPepinP(2011)Modelling the effect of directional spatial ecological processes atdifferent scalesOecologia166 357ndash368 httpsdoiorg101007s00442-010-1867-y
BorcardDGillet Famp Legendre P (2011)Numerical ecology with R NewYorkSpringerhttpsdoiorg101007978-1-4419-7976-6
Brown B L amp Swan C M (2010) Dendritic network structure constrains metacommunity properties in riverine ecosystems Journal of Animal Ecology 79 571ndash580 httpsdoiorg101111 j1365-2656201001668x
Carvajal-Quintero J D Escobar F Alvarado F Villa-Navarro F AJaramillo-VillaUacuteampMaldonado-OcampoJA (2015)Variation infreshwater fish assemblages along a regional elevation gradient inthenorthernAndesColombiaEcology and Evolution52608ndash2620httpsdoiorg101002ece31539
Carvalho R A amp Tejerina-Garro F L (2015) The influence of en-vironmental variables on the functional structure of headwa-ter stream fish assemblages A study of two tropical basins in
378emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
Central Brazil Neotropical Ichthyology 13 349ndash360 httpsdoiorg1015901982-0224-20130148
Castillo-Escrivagrave A Rueda J Zamora L Hernaacutendez R Del MoralM ampMesquita-Joanes F (2016) The role of watercourse versusoverland dispersal and niche effects on ostracod distribution inMediterraneanstreams(easternIberianPeninsula)Acta Oecologica731ndash9httpsdoiorg101016jactao201602001
ChaseJMKraftNJSmithKGVellendMampInouyeBD(2011)Usingnullmodelstodisentanglevariationincommunitydissimilarityfromvariationinα-diversityEcosphere21ndash11
Clements F E (1916)Plant succession An analysis of the development of vegetationWashingtonDCCarnegieInstitutionofWashingtonhttpsdoiorg105962bhltitle56234
Cottenie K (2005) Integrating environmental and spatial processesin ecological community dynamics Ecology Letters 8 1175ndash1182httpsdoiorg101111j1461-0248200500820x
Dallas T (2014) metacom An R package for the analysis of meta-community structure Ecography 37 402ndash405 httpsdoiorg101111j1600-0587201300695x
DallasTampDrakeJM(2014)RelativeimportanceofenvironmentalgeographicandspatialvariablesonzooplanktonmetacommunitiesEcosphere51ndash13
DatryTMeloASMoyaNZubietaJDeLaBarraEampOberdorffT(2016)MetacommunitypatternsacrossthreeNeotropicalcatch-mentswithvaryingenvironmentalharshnessFreshwater Biology61277ndash292httpsdoiorg101111fwb12702
DevercelliMScarabottiPMayoraGSchneiderBampGiriF(2016)Unravelling the role of determinism and stochasticity in struc-turing the phytoplanktonic metacommunity of the Paranaacute Riverfloodplain Hydrobiologia 764 139ndash156 httpsdoiorg101007s10750-015-2363-5
Diamond JM (1975)Assemblyof species communities InMartinLCodyandJaredMDiamondeditorsEcology and evolution of com-munities(pp342ndash444)CambridgeMassBelknapPressofHarvardUniversityPress
DraySBlanchetGBorcardDGuenardGJombartTLarocqueGhellipWagnerHH(2017)adespatialMultivariatemultiscalespatialanalysisRpackageversion009
DufreneMampLegendreP (1997)Speciesassemblagesand indicatorspecies The need for a flexible asymmetrical approachEcological Monographs67345ndash366
Erős T (2017) Scaling fish metacommunities in stream networksSynthesisandfutureresearchavenuesCommunity Ecology1872ndash86httpsdoiorg10155616820171819
Erős T Takaacutecs P Specziaacuter A SchmeraD amp Saacutely P (2017) Effectof landscapecontextonfishmetacommunitystructuringinstreamnetworksFreshwater Biology62215ndash228httpsdoiorg101111fwb12857
FalkeJAampFauschKD(2010)Frommetapopulationstometacom-munities linking theorywith empirical observations of the spatialpopulationdynamicsofstreamfishesInAmericanFisheriesSocietySymposium(Vol73pp207ndash233)
FernandesIMHenriques-SilvaRPenhaJZuanonJampPeres-NetoPR(2014)Spatiotemporaldynamicsinaseasonalmetacommunitystructure is predictable The case of floodplain-fish communitiesEcography37464ndash475
Gleason H A (1926) The individualistic concept of the plant asso-ciation Bulletin of the Torrey Botanical Club 53 7ndash26 httpsdoiorg1023072479933
Heino JMeloASampBiniLM (2015)Reconceptualising thebetadiversity-environmental heterogeneity relationship in runningwater systems Freshwater Biology 60(2) 223ndash235 httpsdoiorg101111fwb12502
HeinoJMeloASSiqueiraTSoininenJValankoSampBiniLM(2015) Metacommunity organisation spatial extent and dispersal
in aquatic systems Patterns processes and prospects Freshwater Biology60845ndash869httpsdoiorg101111fwb12533
Landeiro V L Magnusson W E Melo A S Espiacuterito-Santo H MV amp Bini L M (2011) Spatial eigenfunction analyses in streamnetworks Do watercourse and overland distances produce dif-ferent results Freshwater Biology 56 1184ndash1192 httpsdoiorg101111j1365-2427201002563x
LegendrePLegendreLampLegendreP(2012)Numerical ecology 3rd EnglishedPierreLegendreandLouisLegendreAmsterdamBostonElsevier
LeiboldMAHolyoakMMouquetNAmarasekarePChaseJMHoopesMFhellipGonzalezA(2004)ThemetacommunityconceptAframeworkformulti-scalecommunityecologyEcology Letters7601ndash613httpsdoiorg101111j1461-0248200400608x
LeiboldMAampMikkelsonGM(2002)Coherencespeciesturnoverand boundary clumping Elements of meta-community structureOikos 97 237ndash250 httpsdoiorg101034j1600-07062002 970210x
Logue J B Mouquet N Peter H Hillebrand H amp TheMetacommunityWorkingGroup (2011)Empirical approaches tometacommunities A review and comparisonwith theoryTrends in Ecology amp Evolution 26 482ndash491 httpsdoiorg101016jtree201104009
Loacutepez-GonzaacutelezCPresleySJLozanoAStevensRDampHigginsCL(2012)MetacommunityanalysisofMexicanbatsEnvironmentallymediatedstructure inanareaofhighgeographicandenvironmen-tal complexity Journal of Biogeography 39 177ndash192 httpsdoiorg101111j1365-2699201102590x
MacarthurRampLevinsR (1967)The limitingsimilarityconvergenceanddivergenceofcoexistingspeciesThe American Naturalist101377ndash385httpsdoiorg101086282505
Meynard C N Lavergne S Boulangeat I Garraud L Van Es JMouquetNampThuillerW(2013)Disentanglingthedriversofmeta-community structure across spatial scales Journal of Biogeography401560ndash1571httpsdoiorg101111jbi12116
MontantildeaCGWinemillerKOampSuttonA(2014)IntercontinentalcomparisonoffishecomorphologyNullmodeltestsofcommunityassembly at thepatch scale in riversEcological Monographs84(1)91ndash107httpsdoiorg10189013-07081
MonteiroVFPaivaPCampPeres-NetoPR (2017)Aquantitativeframework to estimate the relative importance of environmentspatial variation and patch connectivity in driving communitycomposition Journal of Animal Ecology 86 316ndash326 httpsdoiorg1011111365-265612619
Mouillot D Dumay O amp Tomasini J A (2007) Limiting similaritynichefilteringandfunctionaldiversityincoastallagoonfishcommu-nitiesEstuarine Coastal and Shelf Science71443ndash456httpsdoiorg101016jecss200608022
Patterson B D amp Atmar W (1986) Nested subsets and thestructure of insular mammalian faunas and archipelagosBiological Journal of the Linnean Society 28 65ndash82 httpsdoiorg101111j1095-83121986tb01749x
Pease A A Gonzaacutelez-Diacuteaz A A Rodiles-Hernaacutendez R ampWinemiller K O (2012) Functional diversity and traitndashenviron-ment relationships of stream fish assemblages in a large tropi-cal catchment Freshwater Biology 57 1060ndash1075 httpsdoiorg101111j1365-2427201202768x
Peres-Neto P R amp Legendre P (2010) Estimating and con-trolling for spatial structure in the study of ecological commu-nities Global Ecology and Biogeography 19 174ndash184 httpsdoiorg101111j1466-8238200900506x
Peres-NetoPRLegendrePDraySampBorcardD(2006)VariationpartitioningofspeciesdatamatricesEstimationandcomparisonoffractionsEcology872614ndash2625httpsdoiorg1018900012-9658(2006)87[2614vposdm]20co2
emspensp emsp | emsp379LOacutePEZ- DELGADO Et AL
Presley S J Higgins C L ampWillig M R (2010) A comprehensiveframework for the evaluation ofmetacommunity structureOikos119908ndash917httpsdoiorg101111j1600-0706201018544x
Presley S J amp Willig M R (2010) Bat metacommunity structure on Caribbean islands and the role of endemics Global Ecology and Biogeography19185ndash199httpsdoiorg101111j1466-82382009 00505x
RCoreTeam (2017)R A language and environment for statistical com-puting Vienna Austria R Foundation for Statistical ComputingRetrievedfromhttpwwwR-projectorg
RobertsDW (2007) labdsvOrdinationandmultivariateanalysis forecologyR package version1(1)
SharmaSLegendrePDeCaacuteceresMampBoisclairD(2011)Theroleofenvironmentalandspatialprocessesinstructuringnativeandnon-native fish communities across thousands of lakes Ecography 34762ndash771httpsdoiorg101111j1600-0587201006811x
SimberloffD(1983)Competitiontheoryhypothesis-testingandothercommunityecologicalbuzzwordsThe American Naturalist122626ndash635httpsdoiorg101086284163
Soininen J (2014) A quantitative analysis of species sorting acrossorganisms and ecosystems Ecology 95 3284ndash3292 httpsdoiorg10189013-22281
SoininenJ(2016)SpatialstructureinecologicalcommunitiesmdashAquan-titative analysis Oikos 125 160ndash166 httpsdoiorg101111oik02241
TerBraakCampŠmilauerP (2012)Canoco reference manual and userrsquos guide Software for ordination (version 50)IthacaNYMicrocomputerPower
Tilman D (1982) Resource competition and community structure PrincetonNJPrincetonUniversityPress
Tonkin J D Stoll S Jaumlhnig S C amp Haase P (2016) Elements ofmetacommunity structure of river and riparian assemblagesCommunities taxonomic groups and deconstructed trait groupsEcological Complexity 25 35ndash43 httpsdoiorg101016jecocom201512002
TorresKMMampHigginsCL (2016)Taxonomicandfunctionalor-ganizationinmetacommunitystructureofstream-fishassemblagesamongandwithinriverbasinsinTexasAquatic Ecology50247ndash259httpsdoiorg101007s10452-016-9572-5
TrujilloFampLassoCA(2017)IVBiodiversidaddelriacuteoBitaVichadaColombia Serie Editorial Fauna Silvestre Neotropical (p 349)BogotaColombiaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtFundacioacutenOmacha
Vitorino-JuacuteniorOBFernandesRAgostinhoCSampPeliciceFM(2016) Riverine networks constrain β-diversity patterns amongfishassemblagesinalargeNeotropicalriverFreshwater Biology611733ndash1745httpsdoiorg101111fwb12813
Willig M R Presley S J Bloch C P Castro-Arellano I CisnerosL M Higgins C L amp Klingbeil B T (2011) Tropical metacom-munities along elevational gradients Effects of forest type andother environmental factors Oikos 120 1497ndash1508 httpsdoiorg101111j1600-0706201119218x
WillisSWinemillerKampLopez-FernandezH (2005)Habitatstruc-turalcomplexityandmorphologicaldiversityoffishassemblagesinaNeotropicalfloodplainriverOecologia142284ndash295httpsdoiorg101007s00442-004-1723-z
WinemillerKOFleckerASampHoeinghausD J (2010)Patchdy-namicsandenvironmentalheterogeneityinloticecosystemsJournal of the North American Benthological Society29 84ndash99 httpsdoiorg10189908-0481
SUPPORTING INFORMATION
Additional supporting information may be found online in theSupportingInformationsectionattheendofthearticle
How to cite this articleLoacutepez-DelgadoEOWinemillerKOVilla-NavarroFADometacommunitytheoriesexplainspatialvariationinfishassemblagestructureinapristinetropicalriverFreshw Biol 201964367ndash379 httpsdoiorg101111fwb13229
370emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
collectionsoftheUniversidaddelTolimaandInstitutovonHumboldtinColombia
23emsp|emspEnvironmental variables
Environmentalvariablesweredividedintosixcategorieswaterpa-rameters substrate instream cover channelmorphology local ri-parianbufferandlandscapevariablesfollowingPeaseetal(2012)(SupportingInformationTableS2)Priortofishsamplingwaterqual-ity parameters such as pH conductivity (μS) water temperature(degC)dissolvedoxygen(mgL)andtotalsolidsweremeasuredateachsurveysiteusingamultiparameterwaterqualitymeter (YSImodel85) To characterise substrate and instreamcover thepercentageof cobble (diameter6ndash25cm) sand (006ndash2mm)mud (lt006mm)filamentousalgaelargewoodydebris(gt50cm)smallwoodydebris(lt50cm)submergedrootsoverhangingterrestrialmaterialandleaflitterwerevisuallyestimatedalongthe200-mreachVariablessuchaswidthofriparianbuffer(m)areaoftheriparianforest(ha)andlandscape(presenceofroadscropsdistancetotheOrinocoRiverandaltitude)weremeasuredbygeoreferencedsatelliteimagesusing
ArcMap (Version1031) inacircularbufferof1kmStreamorderwascalculatedusingthefunctionstreamorderinArcMap(Version1031)methodStrahlerrsquosclassification
24emsp|emspData analysis
Analyses were performed at basin (number of sites=34) and re-gional scales Regional-scale datasets were grouped according tofoursectionsalongthelongitudinalfluvialgradient(highmidndashhighmidndashlow low)Thisapproachaimed toexplore thepossibility thatenvironmental or spatial variationwithin river sections influencesassemblage patterns according tometacommunity processes thatmay differ among sections Using the method of Dufrene andLegendre (1997) we calculated indicator values for species mostcommonwithinagivenriversectionThismethodisbasedonspe-ciesabundance(specificity)andfrequency(fidelity)atsurveysitesValuesfromthismethodrangefrom0to1with1beingaperfectindicator of a river section Significance of indicator values wasevaluatedusingthedifferencebetweentheobservedvalueandthemeanofvaluesobtainedfrom1000randompermutationsSpecies
F IGURE 1 emspMapoftheBitaRiverBasinshowingthefoursectionsandthe34surveysites
E1E2E3
E4
E9 E8E7E6
E34E33
E31
E30E29
E28E27
E26E20
E19
E15E11
68deg0prime0primeprimeW69deg0prime0primeprimeW
6deg0
0N
6deg0prime
0primeprimeN
Casanare River
Meta River
Orin
oco
Riv
er
Bita River
BrazilPeru
Bolivia
Argentina
Colombia
Venezuela
ChileParaguay
Ecuador
GuyanaSuriname
Uruguay
French Guiana (France)
E1
E2E3E4
E5E9
E8E7
E6E17
E15E14E13
E12
E10
E31
E30E29
E28
E27E26E25E23E22
E20E19
E34E33
E32
Meta River
Mid_High
Mid_Low Low
Venezuela
Colombia
South America
ColombiaBita River
Bita River
Bita R
iver
High
Bita River
Orin
oco
Riv
er
Bita river basin
0 40 8020 Kilometers
emspensp emsp | emsp371LOacutePEZ- DELGADO Et AL
indicator analysiswas performed using the function Indval of thepackagelabdsv(Roberts2007)intheRstatisticallanguage(Version341)(RCoreTeam2017)
25emsp|emspSpatial variables
Becausefishdispersalinriversisdifficulttoestimateweusedspa-tial predictors as proxies for dispersal potential Spatial eigenvec-torswereusedaspredictors to control for spatial autocorrelationandestimate the influenceof spatialdistanceon speciesdistribu-tionsandpatternsofassemblagestructure(Peres-NetoampLegendre2010) Spatial patternsweremodelled through asymmetric eigen-vectormaps (AEM)anapproachproposedbyBlanchetLegendreandBorcard(2008b)Thismethodtakesintoaccountthedirectionalaspectofinter-sitedistancesofsystemssuchasrivernetworks(egwaterflowrelativeposition)a limitationofmethodssuchasprin-cipal coordinates of neighbour matrices and Moranrsquos eigenvectormaps(BlanchetLegendreMarangerMontiampPepin2011SharmaLegendreDeCaacuteceresampBoisclair2011)
To perform theAEMwe used the distribution of sites acrossthebasintoconstructaconnectiondiagramthatlinkssitestooneanotheraccording topathwayswithin the rivernetwork (Figure1SupportingInformationTableS3)followingtheflowdirectionfromupstreamtodownstreamUsingtheconnectiondiagramasites-by-edgesmatrixwasconstructedandthismatrixwasusedtocalculateasymmetricalspatialeigenfunctionsthroughsingularvaluedecom-positionwhichwereused laterasspatialdescriptorsAEMeigen-functionswerecalculatedusingthefunctionaemfromthepackageadespatial inR (Version341) (Drayetal2017)Toobtainanad-ditional spatial descriptorwemeasured thewatercourse distanceas thedistance fromeachpoint to the rivermouthalong thewa-tercourseusinggeoreferencedsatellite images inArcMap(Version1031)Thisvariableismorerelevanttofishdispersalthanstraight-linedistancethatincludesoverlandsegments(albeitsuchdispersalroutesarepossibleduringtheannualfloodpulse)
26emsp|emspElements of the metacommunity structure
Usingthesites-by-species incidencematrix (excludingrarespeciesthatoccurredatonlyonesite)asinputforRAEMSwereanalysedbasedonspeciesscoresonthefirsttwoaxesToevaluatepatternswithrespecttosixidealiseddistributionalpatterns(1)checkerboard(Diamond1975) (2)nestedsubsets (PattersonampAtmar1986) (3)Clementsian (Clements 1916) (4) Gleasonian (Gleason 1926) (5)evenlyspaced(Tilman1982)and(6)random(Simberloff1983)wefollowedtheframeworkproposedbyLeiboldandMikkelon(2002)andPresleyetal(2010)
Coherencewasassessedbycalculatingthenumberofgapsinspeciesrange(observedabsences)fromtheorderedmatrixfromRAStatisticalsignificanceofcoherencewasevaluatedusingthez-score test comparing observed absenceswith those expectedbasedon1000randomisedsimulationsWheneverobservedab-sencesaregreaterthanexpected(negativecoherence)thereisa
checkerboardpatternConversely ifobservedabsencesare lessthanexpectedunderthenullmodel(positivecoherence)theanal-ysis tests forevidenceofspeciesturnoverandboundaryclump-ing No significant difference between observed and expectedabsences indicates randomdistributions (no coherence) (LeiboldampMikkelson2002)
TurnoverwasevaluatedbycalculatingthenumberofspeciesreplacementsbetweensitesWeusedaz-score test tocompareobserved species replacements with the mean for species re-placements obtained from 1000 null simulations Significantlyfewerobservedreplacementsare indicativeof lowturnoveranddistributionsthatarenestedsubsetswhereasmoreobservedre-placementsindicatehighturnoverFinallyboundaryclumpingwasevaluatedusingMorisitarsquosindexforwhichavalueofoneindicatesthatboundariesarenotclumpedvalueslt1indicateclumpingandlt1indicateshyperdispersionStatisticalsignificanceofMorisitarsquosindexwasdeterminedusingtheχ2 testMore informationaboutinference of idealised patterns can be found in fig1 of Presleyetal(2010)
Weappliedafixedproportionalnullmodel(ier1 null model in MetacommunityfunctioninR)totestsignificanceofcoherenceandturnoverThisnullmodelmaintainsspeciesrichnessofeachsamplingsite but fills species ranges based on theirmarginal probabilitiesRandomsimulatedmatriceswerecalculatedusing1000simulations(Dallas2014)EMSwereassessedusingtheMetacommunity func-tionoftheMetacompackage(Dallas2014)inR
27emsp|emspVariation partitioning
Weusedvariationpartitioninganalysis(Peres-Netoetal2006)asanadditionalmeanstoidentifymetacommunitytypesandtoassesstherelativecontributionofenvironmentalandspatialpredictorsonfishdistributionsatbasinandregionalscalesThismethodallowedus to determine the contribution of environmental conditions in-dependentofspaceandvice versacontrollingfortypeIerrorasaproductofspatialautocorrelationintheenvironmentalcomponent(Peres-NetoampLegendre2010)Type I errormay lead to spuriousconclusions generating significant speciesndashenvironment relation-ships thatareartefactsPartitioninganalysiswasconductedusingthe adjusted R-squared in redundancy analysis on the Hellinger-transformedspecies-by-sitesabundancematrixandtwosetsofpre-dictorsenvironment[E]andspace[S]
To create each set of predictors firstwe reduced the num-berofvariablesineachmatrixbecausetheyreducethestatisticalpowerofthetesttoidentifyuniqueandsignificantenvironmentalandspatialcontributions(Peres-NetoampLegendre2010)Weper-formedavariableselectionforeachsetofpredictorsto identifysignificantvariables(plt05)associatedwiththespecies-by-sitesabundancematrixForthe[E]matrixwetransformedtheenviron-mentalvariablesduetononhomogeneousunitsandverifiedthatthedistributionwasnormalThosevariablesexpressedaspropor-tionsweretransformedtothearcsineoftheirsquarerootThere-mainingvariableswerelog(x+1)transformedwiththeexception
372emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
ofordinal andcategoricaldata forwhichno transformationwasdone Data for all variables were standardised and centred bycalculating z-scores (mean=0 standard deviation=1) (BorcardGilletampLegendre2011FalkeampFausch2010)Thefunctionfor-wardselfromtheRlibraryadespatial(Drayetal2017)wasusedtoperformvariableselectionusing999permutationswithasig-nificance level of p=05Selectedvariablescomprisedtheenvi-ronmentalmatrix[E]usedforthepartitionanalysis
Spatial predictors from the AEM analysis and inter-site dis-tancedataweretestedforinclusioninthespatialmatrix[S]usingtheforwardselfunctionoftheRlibraryadespatialusingthesameapproachasdescribedforthe[E]matrixSelectedvariableswereincludedinthe[S]matrixforthepartitioninganalysisFinallywithourthreedatasets(Hellinger-transformedsites-by-speciesmatrix[E]and [S])weapplied thevarpart functionof thevegan libraryin R to perform variation partitioning analysis as proposed byBlanchetLegendreandBorcard(2008a)andBorcardetal(2011)
Thesignificancelevelsofthecomponentsproducedbythevari-ation partitioning were used to classify the fish metacommunityaccording to one of the four metacommunity paradigms speciessorting mass effect neutral model and patch dynamics (Leiboldetal2004)TochoosetheproperparadigmweappliedthedecisiontreeproposedbyCottenie(2005)
28emsp|emspDrivers of metacommunity structure
We used two approaches to identify the underlying environmen-talandspatialfactorsthatcorrelatewithobservedpatterns inthemetacommunityorganisationat thebasinandregional levelFirstwecalculatedSpearman-rankcorrelationsbetweenthetwodomi-nantaxesextractedfromtheRAused in theEMSframeworkandeachvariablefromthesetofenvironmentalandspatialpredictorsSecond a variable selection procedure was performed for eachgroup (environmentalandspatial)usingthe forwardsel functionoftheRlibraryadespatialCorrelationswerecalculatedusingthefunc-tioncortestofthestatslibraryinR
3emsp |emspRESULTS
High and midndashhigh sections were characterised by higher valuesofdissolvedoxygenelevationdistance fromthemainsourcesa-vannaareaflowandpercentagesofgrassesandfilamentousalgae(Supporting Information Table S2) Channel width water tem-perature and total solids tended tobe lower atupper-basin sitesSubstratumandinstreamcoverwereheterogeneouswithinallfoursectionsSiteslocatedinthelowersectionstendedtohavemoreex-tensiveriparianforestmorelagoonsinadjacentfloodplainswiderchannelsandlowerflowvelocity(SupportingInformationTableS2)
A total of 25928 fish specimens representing 201 species 39familiesand10orderswerecollectedduringthestudySixtyspecieswerecollectedinthehighsection148inthemidndashhigh142inthemidndashlowand67inthelowsectionAveragenumberofspecimenspersite
was762andspeciesrichnessvariedfrom4to55ThemostabundantspecieswereAmazonprattus scintilla(Engraulidae)andtwospeciesofthegenusHemigrammus(Characidae)H elegans and H geisleriThesethreespeciesrepresentednearly30ofthecollectedfishspecimens(Supporting Information Table S4) Fifty-one rare species were col-lectedatsinglesitesSeveralspecieswereidentifiedasindicatorsforthe low (12spp)andhigh (sixspp) sectionsandfewornonewereidentifiedforthemidndashhigh(onesp)andlow(0sp)sections(Table1)
31emsp|emspElements of metacommunity structure
Atthebasinscale(34sites)theEMSrevealedpositivecoherencewithaClementsiandistributionalongbothof thedominantaxesmodel-ling gradientsof fish assemblage structure (RA1andRA2) (Table2Figure2)Thusatabroadspatialscalespeciesseemtorespondasgroupstoenvironmentalfactorsleadingtorelativelydiscreteassem-blagesalongthelongitudinalgradientTheClementsianpatterniden-tified forRA1waspositively correlatedwithchannelwidth streamorderandspatialpredictors(AEM21AEM25)andnegativelycorre-latedwithvariablesassociatedtosubstrateinstreamcoverandlocalriparianvegetation(Table3)ForRA2onlythespatialpredictorAEM1(positive)andflow(negative)werecorrelatedwithsitescores(Table3)
Metacommunitystructurewasanalysedforsiteswithineachof the foursectionsalongthe longitudinal fluvialgradient (highmidndashhighmidndashlowandlow)Assemblagesinthehighandlowsec-tionshadnegativecoherenceandarandompatternforbothRAaxes in thehighsectionandRA1 in the lowsectionRA2 in the
TABLE 1emspSummaryoftheindicatorspeciesanalysisforeachsectionintheBitaBasin
Species Section Indicator value
Hemigrammus schmardae High 059
Parotocinclus eppleyi High 040
Ammocryptocharax elegans High 040
Farlowella vittata High 038
Mastiglanis asopos High 037
Phenacorhamdia anisura High 035
Steindachnerina argentea Midndashhigh 048
Nannostomus unifasciatus Low 089
Microphilypnus ternetzi Low 084
Hemigrammus elegans Low 083
Apistogramma minima Low 066
Brittanichthyssp Low 061
Curimatopsis evelynae Low 060
Hemigrammus analis Low 060
Acaronia vultuosa Low 059
Hemigrammus rhodostomus Low 058
Ochmacanthus alternus Low 058
Acestrorhynchus minimus Low 057
Hemigrammus barrigonae Low 033
Onlyspecieswithstatisticallysignificantvalues(plt005)arelisted
emspensp emsp | emsp373LOacutePEZ- DELGADO Et AL
TABLE 2 emspResultsofEMSanalysisoffishmetacommunitystructureattheleveloftheentireBitaBasinandattheregionallevelforhighmidndashhighmidndashlowandlowsectionsoftheriver
Axis of variation Basin High Midndashhigh Midndashlow Low
Species 145 37 84 85 55
Sites 34 5 12 14 3
Primaryaxis
Coherence
Observedabsences 2506 55 318 453 14
Expectedabsences 3032 41 445 554 14
p-value lt0001 0127 lt0001 0001 09
Turnover
Observedreplacements 347752 543 20498 27534 630
Expectedreplacements 186586 624 14397 20631 621
p-value lt0001 015 lt0001 lt0001 089
Clumping
Morisitarsquosindex 158 102 137 114 1
p-value lt0001 017 lt0001 lt0001 gt0999
Best-fitpatterns Clementsian Random Clementsian Clementsian Random
Secondaryaxis
Coherence
Observedabsences 2706 40 383 541 22
Expectedabsences 3030 4032 447 557 13
p-value 0001 096 003 064 0007
Turnover
Observedreplacements 366210 597 19630 14070 377
Expectedreplacements 186480 622 14397 20697 541
p-value lt0001 065 lt0001 lt0001 0004
Clumping
Morisitarsquosindex 155 136 137 117 1
p-value lt0001 0004 lt0001 lt0001 gt0999
Best-fitpatterns Clementsian Random Clementsian Random Nesteddistribution
Statisticallysignificantvalues(plt005)areshowninboldtype
F IGURE 2 emspSpeciesdistributionsamong34sitesintheBitaBasinorderedaccordingtoscoresonthefirstaxisofthereciprocalaveragingrevealingaClementsiangradientSitesareinrowsspeciesareincolumns
E16E8E7
E17E24E30E20E10E18E33E27E31E9
E26E2E1
E12E4E5
E25E15E34E14E21E32E22E11E23E3
E13E6
E29E28E19
Species
AbsencePresence
374emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
lowsectionrevealedanesteddistributionNosignificantcorrela-tionsbetweenassemblagestructureandenvironmentalorspatialfactorswerefoundforthehighandlowsections(Tables2and3Figure3)
Midndashhigh and midndashlow sections displayed Clementsian pat-terns of assemblage structure for both the first and second RAaxes For the midndashhigh section no significant correlations wereobtained between RA1 and environmental or spatial variableshoweverRA2waspositivelycorrelatedwiththepresenceofroadsandthespatialpredictorAEM1(Tables2and3Figure3)ForthemidndashlowsectionRA1waspositivelycorrelatedwithsubstrateandinstreamcoverandRA2withthespatialpredictorAEM1(Tables2and3Figure3)
32emsp|emspVariation partitioning analysis
Atthebasinscaleallthecomponentsfromvariationpartitioning(ESE+SE|SS|E)explainedsignificant(plt05)variationinfishassem-blagestructuresupportingtheideathatmetacommunitydynamicsinfluencepatternsat that scale (Table4)Around19of the totalexplainedvariation (E+S)wasmodelledbythecombined influenceofenvironmentandspatialpredictors69byapureenvironmentalcomponent(E|S)and46byapurespatialcomponent(S|E)Eighty-onepercentofthevariationwasunexplainedEnvironmentalvaria-tionatthebasinscalewassignificantlyinfluencedbypercentageof
mudsubstratesmallwoodydebrisandwaterconductivity(Table4)Onlyfourof33spatialpredictorsweresignificant(AEM1AEM16AEM18AEM21Table4)
Attheregionalscalethenumberofsiteswithinthehighandlow sections was too small for statistical analysis and only themidndashhigh and midndashlow sections were analysed Only the envi-ronmental component (E) explained significant variation in fishassemblagestructurewithineachofthesesections(Table4)indi-catingthatitwasnotpossibletoinferanymetacommunitymodelIn themidndashhigh section a significant environmental componentinfluenced most strongly by percentage of mud substrate andsmallwoodydebrisexplained16ofassemblagevariationInthemidndashlow section 14of assemblage variationwas explainedbyan environmental componentwith conductivity andpercentageofsmallwoodydebrismostinfluential
33emsp|emspDrivers of fish community structure
The set of variables selected by variation partitioning includedmostof theones thathadhighestSpearman rankcorrelationsAtthe basin level environmental variables related to substrate andinstream coverwere identified by bothmethods (Tables3 and 4)EnvironmentalpredictorssuchaspercentagesofmudsubstrateandsmallwoodydebrisandthespatialpredictorAEM1weresignificantatbothbasinandregionalscales(Tables3and4)
TABLE 3emspSpearman-rankcorrelationsbetweenpredictorsandscoresobtainedfromthefirsttwoaxesfromthereciprocalaveragingordinationofthesites-by-speciesincidencematrixintheelementsofmetacommunitystructureframework
Variables
Basin Midndashhigh Midndashlow
r p r p r p
Primaryaxis
()Mud minus055 lt001 061 002
()Largewoodydebris minus048 lt001
()Smallwoodydebris minus048 lt001 055 004
()Submergedroots minus048 lt001 061 002
()Streamshadedbytreecanopy minus047 lt001 061 002
Width 037 003
Streamorder 052 lt001
AEM21 039 002
AEM25 039 002
Secondaryaxis
()Mud minus071 001
()Largewoodydebris minus066 002
()Smallwoodydebris minus075 lt001
()Streamshadedbytreecanopy minus075 lt001
Flow minus047 lt01
Neartoroads 066 002
AEM1 051 lt01 06 004 069 001
Onlystatisticallysignificantvalues(plt005)areshownNosignificantcorrelationswerefoundforhighandlowsectionsAEMasymmetriceigenvectormaps
emspensp emsp | emsp375LOacutePEZ- DELGADO Et AL
F IGURE 3 emspSpeciesdistributionswithinfourriversectionsorderedaccordingtoscoresonthefirstreciprocalaxis
High
E5
E2
E4
E3
E1
Species
Midminushigh
E16
E8
E7
E9
E14
E17
E10
E15
E12
E11
E13
E6
Species
Midminuslow
E30E20E24E18E26E27E31E25E21E23E22E29E28E19
Species
Low
E33
E34
E32
Species
Absence
Presence
Component
Bita basin Midndashhigh Midndashlow
AdjR2 p AdjR2 p AdjR2 p
E 014 0001 016 0007 014 0002
S 012 0001 000 05 000 056
E+S 019 0001 018 02 014 013
E|S 0069 0001 020 03 016 016
S|E 0046 0025 002 06 000 051
b 0075
R 081 082 086
Variablesselected Mud[E] Smallwoodydebris[E] Conductivity[E] AEM1[S] AEM16[S] AEM18[S] AEM21[S]
Mud[E] Smallwoodydebris[E]
Conductivity[E] Smallwoodydebris[E]
AEMasymmetriceigenvectormapsAdjR2adjustedR2forthepercentageofvariationEenviron-mentalvariationSspatialvariationE+STotalexplainedvariationE|SPureenvironmentalvaria-tion S|E Pure spatial variation b Variation shared by environmental and spatial factorsRUnexplainedvariation(residual)Significantvalues(plt005)areshowninbold
TABLE 4emspVariationpartitioninganalysisforfishassemblagesandselectedgroupsofenvironmentalandspatialvariablesatbasinandregionalscales
376emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
4emsp |emspDISCUSSION
In this study we applied complementary statistical analyses toinvestigate fish species distributions and variation in assemblagestructureacrossalongitudinalfluvialgradienttorevealtherelativeinfluenceoffactorsassociatedwithenvironmentalconditions(eghabitat features environmental filtering) and spatial relationshipsinfluencingdispersalResultsfromtheseanalysesprovidedabasistoinfertherelativeinfluenceofbiotic interactionsandstochasticprocessesincommunityassemblyattwospatialscalesOurresultssuggest that the fishmetacommunity in theBitaRiver exhibits aClementsiandistributionimplyingthatspeciesrespondtotheen-vironmental and fluvial gradient as groups with fairly consistentcompositions (Clements1916)Thispatternalso impliesapoten-tialeffectofenvironmentalfilteringatthescaleoftheentirebasinSimilarlythevariationpartitioninganalysisshowedthatthevaria-tion explainedby the pure environmental componentwas higherthanthepurespatialcomponentwhichalsoisconsistentwithspe-ciessortingSpeciessortingoccurswhenorganismsselecthabitatsthat convey relativelyhigh fitness andor avoidor areotherwiseeliminatedfromhabitatsthatreducetheirfitness(Soininen2014)Thesefindingssupportourpredictionthatatthebasinscaledis-persalratesarelowandassemblagestructureisstronglyinfluencedbyspeciessorting
Ourregional-scaleresultsalsorevealedaClementsiandistribu-tionoflocalassemblagecompositionThispatterncouldhavebeencausedbyspeciesresponsestospatialvariationofabioticandbioticenvironmentalfactorsSpearmancorrelationbetweenenvironmen-talvariablesandsitescoresongradientsofassemblagevariationin-dicatedthatstreamorderandchannelsizehadstrongassociationswithlocalassemblagestructureVariablesassociatedwithsubstratecomposition and instream cover also had significant associationsFishes in theBitaRiver apparently respond to theseenvironmen-talvariablesasrelativelyclumpedgroupsClementsianassemblagestructure has been found in plants (Meynard etal 2013 Willigetal2011)mammals(Loacutepez-GonzaacutelezPresleyLozanoStevensampHiggins 2012PresleyampWillig 2010) andvarious freshwateror-ganismsincludingplanktonmacroinvertebratesandfish(DallasampDrake2014Erősetal2017FernandesHenriques-SilvaPenhaZuanonampPeres-Neto2014TonkinStollJaumlhnigampHaase2016TorresampHiggins2016)
Weproposed that somemetacommunity processes and resul-tantpatternswouldnotbethesameattwodifferentspatialscalesofanalysisWefoundpositivecoherenceandturnoverinupstreamregionsandpositivecoherenceandnegativeturnoverwithnesteddistributionsindownstreamregionsThesepatternswerenotpre-dicteda prioriAttheregionalscaleaClementsiandistributionwasfoundonlyinthemidndashhighandmidndashlowsectionsofthebasinsug-gesting that species responded as groups to environmental filtersmore strongly in these middle sections of longitudinal gradientAssemblage coherence was non-significant (ie not statisticallydifferent from a random distribution) for the high and low sec-tionsoftheriverAccordingtoPresleyetal(2010)non-significant
coherence is not always an indicatorof randomstructuresDallasandDrake(2014)foundthatinmoststudiesinwhichrandompat-ternswerefoundsamplescontainedfewspeciesfewsitesorbothand therefore therewas not enough statistical power to test co-herenceusing randomisationprocedures Inourstudy therewerefewersurveysitesforthehighestandlowestsectionsoftheriverwhichmayaccountfornon-significantcoherenceinthosesectionsNonethelessFigure3revealsapatternofspeciesdistributionwithhigh turnover and boundary clumping in the high section such apatternislessdiscernibleforthelowsection
Inthelowsectionoftheriverdistributionpatternswerediffer-ent for the twoassemblageordinationaxesRandomdistributionswere inferredbasedon the firstordinationaxisandnesteddistri-butionswerefoundforthesecondaxisResultsofthesecondaxissupport our hypothesis that environmental gradients over smallerspatial scales in the low sectionmay promote nested distributionpatternsSitesinthissectionwerecharacterisedbysubstratescom-prised almost entirely of sandwith patches of leaf litter and lowvariation inwater physicochemistryDistribution patternsmay bemorelikelytobenestedwhensamplesizeissmallandenvironmen-talgradientsareshort(Tonkinetal2016)ConverselylargesamplesizesandlongenvironmentalgradientsmayincreasethelikelihoodoffindingClementsianandGleasonianpatterns
At the basin scale the total variation in assemblage structurecapturedbythemodel(19)wasdecomposedinto69purelyen-vironmental 75 shared by environmental and spatial and 46purelyspatialcomponents(eachfractionwithplt0001)Thepureenvironmental component was strongly associated with the per-centage of mud substrate small woody debris and conductivitySharedenvironmentalandspatialfactorsalsowereassociatedwiththepercentageofmudandconductivityThepure spatial compo-nentwas represented by eigenvectors fromAEM predictors thatare not easily interpretable because they integrate multiple spa-tial scales (Peres-Netoamp Legendre 2010)with small-scale spatialvariables tending tobeassociatedwithmasseffectdynamics andlarge-scalespatialvariablestendingtobeassociatedwithdispersallimitation (HeinoMeloampBini2015HeinoMeloSiqueiraetal2015) At the scale of the entire basin both processes probablyoccursimultaneously
Thepercentageofvariationexplainedbyourpartitioninganal-ysiswas low(19)acommonfinding incommunityecologystud-ies (Castillo-Escrivagrave etal 2016 Devercelli Scarabotti MayoraSchneider amp Giri 2016 Erős etal 2017 Legendre amp Legendre2012TerBraakampŠmilauer2012)Thelargeamountofunexplainedvariationcouldbeduetoseveralfactorssuchasfailuretoincludeother relevant environmental variables and spatial predictors orvariablesrelatedtootherprocessessuchasbiotic interactionsOfcoursetherealsocouldbealargeinfluenceofstochasticdynamicsSoininen(2016)reviewed322datasetsandfoundthatspatialpredic-torsobtainedfromspatialeigenvectoranalysisgenerallyexplainedasmall fractionof totalassemblagevariationwhichsuggests thatspatialpredictors fromAEMmayperformpoorly incapturingpat-ternsreflectingdispersaldynamicsMonteiroetal(2017)proposed
emspensp emsp | emsp377LOacutePEZ- DELGADO Et AL
theuseofpatchconnectivitymetricsaspredictorsofdispersaldy-namicsratherthanspatialeigenvectorsTheyfoundthatthepatchconnectivityframeworkincreasedtheamountofexplainedvariationbyasmuchas50
Becausebothpureenvironmentalandpurespatialcomponentswere statistically significant both species sortingandmasseffectdynamics could have influenced fish assemblage structure at thebasin scale (Cottenie 2005) However because the proportionexplained by the pure environmental fractionwas larger than thespatialfraction(69versus46)speciessortingwasprobablythemoreinfluentialcomponentstructuringfishassemblagesinthissys-temTheseresultsareinaccordancewithHeinoMeloampBini(2015)whofoundthatanintermediateamountofdispersalwasneededforthespeciessortingprocesssincespeciesneedtodispersefromoneplace toanother searching forsiteswith theappropriateenviron-mentalconditionstothrive
Soininen(2014)reviewed326investigationsthatusedvariationpartitioning analysis finding that environmental variables usuallyexplainedthemostvariationinassemblagecompositionandspeciessortingwasmostofteninferredSpeciessortingmaybethepreva-lentmetacommunitymodel for river and stream fish assemblages(Cottenie2005FalkeampFausch2010HeinoMeloampBini2015HeinoMeloSiqueiraetal2015)
At a smaller spatial scale we predicted that species sortingstrongly influencesassemblages inheadwaterswherehabitatsarerelativelyisolatedwithintherivernetworkwhereasassemblagesindownstreamreacheswouldhavegreaterdispersalandbemorein-fluencedbymasseffectdynamicsThesepredictionswerenotcon-firmedBasedonvariationpartitioninganalysisandthedecisiontreeofCottenie(2005)noevidencewasobtainedtosupportanyofthemetacommunity paradigmsproposedby Leibold etal (2004) Thevariation partitioning procedure could only be performed for themidndashhighandmidndashlowsectionsthathadsufficientlylargesamplesOnlytheenvironmentalfractionwassignificantandthisresultcanbepronetotypeIerror
Insummaryvariationpartitioningandmetacommunitystructureanalysesprovidedcomplementaryfindingstoinferprocessesstruc-turingfishassemblagesintheBitaRiverBothapproachesidentifiedenvironmentalfilteringandspeciessortingastheprincipalstructur-ingprocessesinthissystemVariationpartitioninganalysisimpliedthatdispersalplaysasignificantroleatthebasinscalehowevertheenvironmentalfractionexplainedmorevariationBothanalysesre-vealedassemblagepatternscorrelatedwithcomponentsofhabitatstructureSimilarconclusionshavebeenreportedfromstudiescon-ducted at smaller spatial scales inother tropical rivers (ArringtonWinemillerampLayman2005WillisWinemillerampLopez-Fernandez2005)with some also inferring that biotic interactionsplay a sig-nificant role in structuring fish assemblages within local habitats(MontantildeaWinemillerampSutton2014) Inastudyof theCinarucoRiveranOrinocotributaryintheVenezuelanLlanoswithcharacter-isticssimilartotheBitaRiverWillisetal(2005)foundthathabitatstructural complexity was strongly correlated with the functionaldiversity of fish assemblages These findings combinedwith ours
suggest that fish community structure of Neotropical rivers andstreams is influencedby localenvironmentalconditionsespeciallyaspectsassociatedwithsubstrateandhabitatstructuralcomplexitythat in turnaffect species sorting that results inClementsianpat-ternsofspeciesdistribution Improvedunderstandingof the influ-enceofdispersalenvironmentalfilteringandbioticinteractionsonspeciesassemblagesinpristinesystemswillbeessentialforeffortstoconserveandrestorebiodiversityForexampleifthespatialdis-tributionoffishesintheBitaRiverderiveslargelyfromdispersalandenvironmental filtering then strategies to conserve fish diversitymustemphasisemaintenanceofhabitatheterogeneityandconnec-tivityatappropriatespatialandtemporalscales
ACKNOWLEDG MENTS
WethankWorldWildlifeFoundation(WWF)ColombiaFundacioacutenOmachaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtandUniversidaddelTolimaforlogisticsandfinancingpartof this studyWealsowould like to thankDTaphornCDoNascimentoJGAlbornozandDMontoyafortheirassistanceinthefieldandlaboratorywork
ORCID
Edwin O Loacutepez-Delgado httpsorcidorg0000-0002-4010-1880
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Carvalho R A amp Tejerina-Garro F L (2015) The influence of en-vironmental variables on the functional structure of headwa-ter stream fish assemblages A study of two tropical basins in
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Central Brazil Neotropical Ichthyology 13 349ndash360 httpsdoiorg1015901982-0224-20130148
Castillo-Escrivagrave A Rueda J Zamora L Hernaacutendez R Del MoralM ampMesquita-Joanes F (2016) The role of watercourse versusoverland dispersal and niche effects on ostracod distribution inMediterraneanstreams(easternIberianPeninsula)Acta Oecologica731ndash9httpsdoiorg101016jactao201602001
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DallasTampDrakeJM(2014)RelativeimportanceofenvironmentalgeographicandspatialvariablesonzooplanktonmetacommunitiesEcosphere51ndash13
DatryTMeloASMoyaNZubietaJDeLaBarraEampOberdorffT(2016)MetacommunitypatternsacrossthreeNeotropicalcatch-mentswithvaryingenvironmentalharshnessFreshwater Biology61277ndash292httpsdoiorg101111fwb12702
DevercelliMScarabottiPMayoraGSchneiderBampGiriF(2016)Unravelling the role of determinism and stochasticity in struc-turing the phytoplanktonic metacommunity of the Paranaacute Riverfloodplain Hydrobiologia 764 139ndash156 httpsdoiorg101007s10750-015-2363-5
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Erős T (2017) Scaling fish metacommunities in stream networksSynthesisandfutureresearchavenuesCommunity Ecology1872ndash86httpsdoiorg10155616820171819
Erős T Takaacutecs P Specziaacuter A SchmeraD amp Saacutely P (2017) Effectof landscapecontextonfishmetacommunitystructuringinstreamnetworksFreshwater Biology62215ndash228httpsdoiorg101111fwb12857
FalkeJAampFauschKD(2010)Frommetapopulationstometacom-munities linking theorywith empirical observations of the spatialpopulationdynamicsofstreamfishesInAmericanFisheriesSocietySymposium(Vol73pp207ndash233)
FernandesIMHenriques-SilvaRPenhaJZuanonJampPeres-NetoPR(2014)Spatiotemporaldynamicsinaseasonalmetacommunitystructure is predictable The case of floodplain-fish communitiesEcography37464ndash475
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Heino JMeloASampBiniLM (2015)Reconceptualising thebetadiversity-environmental heterogeneity relationship in runningwater systems Freshwater Biology 60(2) 223ndash235 httpsdoiorg101111fwb12502
HeinoJMeloASSiqueiraTSoininenJValankoSampBiniLM(2015) Metacommunity organisation spatial extent and dispersal
in aquatic systems Patterns processes and prospects Freshwater Biology60845ndash869httpsdoiorg101111fwb12533
Landeiro V L Magnusson W E Melo A S Espiacuterito-Santo H MV amp Bini L M (2011) Spatial eigenfunction analyses in streamnetworks Do watercourse and overland distances produce dif-ferent results Freshwater Biology 56 1184ndash1192 httpsdoiorg101111j1365-2427201002563x
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Loacutepez-GonzaacutelezCPresleySJLozanoAStevensRDampHigginsCL(2012)MetacommunityanalysisofMexicanbatsEnvironmentallymediatedstructure inanareaofhighgeographicandenvironmen-tal complexity Journal of Biogeography 39 177ndash192 httpsdoiorg101111j1365-2699201102590x
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Meynard C N Lavergne S Boulangeat I Garraud L Van Es JMouquetNampThuillerW(2013)Disentanglingthedriversofmeta-community structure across spatial scales Journal of Biogeography401560ndash1571httpsdoiorg101111jbi12116
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Pease A A Gonzaacutelez-Diacuteaz A A Rodiles-Hernaacutendez R ampWinemiller K O (2012) Functional diversity and traitndashenviron-ment relationships of stream fish assemblages in a large tropi-cal catchment Freshwater Biology 57 1060ndash1075 httpsdoiorg101111j1365-2427201202768x
Peres-Neto P R amp Legendre P (2010) Estimating and con-trolling for spatial structure in the study of ecological commu-nities Global Ecology and Biogeography 19 174ndash184 httpsdoiorg101111j1466-8238200900506x
Peres-NetoPRLegendrePDraySampBorcardD(2006)VariationpartitioningofspeciesdatamatricesEstimationandcomparisonoffractionsEcology872614ndash2625httpsdoiorg1018900012-9658(2006)87[2614vposdm]20co2
emspensp emsp | emsp379LOacutePEZ- DELGADO Et AL
Presley S J Higgins C L ampWillig M R (2010) A comprehensiveframework for the evaluation ofmetacommunity structureOikos119908ndash917httpsdoiorg101111j1600-0706201018544x
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RobertsDW (2007) labdsvOrdinationandmultivariateanalysis forecologyR package version1(1)
SharmaSLegendrePDeCaacuteceresMampBoisclairD(2011)Theroleofenvironmentalandspatialprocessesinstructuringnativeandnon-native fish communities across thousands of lakes Ecography 34762ndash771httpsdoiorg101111j1600-0587201006811x
SimberloffD(1983)Competitiontheoryhypothesis-testingandothercommunityecologicalbuzzwordsThe American Naturalist122626ndash635httpsdoiorg101086284163
Soininen J (2014) A quantitative analysis of species sorting acrossorganisms and ecosystems Ecology 95 3284ndash3292 httpsdoiorg10189013-22281
SoininenJ(2016)SpatialstructureinecologicalcommunitiesmdashAquan-titative analysis Oikos 125 160ndash166 httpsdoiorg101111oik02241
TerBraakCampŠmilauerP (2012)Canoco reference manual and userrsquos guide Software for ordination (version 50)IthacaNYMicrocomputerPower
Tilman D (1982) Resource competition and community structure PrincetonNJPrincetonUniversityPress
Tonkin J D Stoll S Jaumlhnig S C amp Haase P (2016) Elements ofmetacommunity structure of river and riparian assemblagesCommunities taxonomic groups and deconstructed trait groupsEcological Complexity 25 35ndash43 httpsdoiorg101016jecocom201512002
TorresKMMampHigginsCL (2016)Taxonomicandfunctionalor-ganizationinmetacommunitystructureofstream-fishassemblagesamongandwithinriverbasinsinTexasAquatic Ecology50247ndash259httpsdoiorg101007s10452-016-9572-5
TrujilloFampLassoCA(2017)IVBiodiversidaddelriacuteoBitaVichadaColombia Serie Editorial Fauna Silvestre Neotropical (p 349)BogotaColombiaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtFundacioacutenOmacha
Vitorino-JuacuteniorOBFernandesRAgostinhoCSampPeliciceFM(2016) Riverine networks constrain β-diversity patterns amongfishassemblagesinalargeNeotropicalriverFreshwater Biology611733ndash1745httpsdoiorg101111fwb12813
Willig M R Presley S J Bloch C P Castro-Arellano I CisnerosL M Higgins C L amp Klingbeil B T (2011) Tropical metacom-munities along elevational gradients Effects of forest type andother environmental factors Oikos 120 1497ndash1508 httpsdoiorg101111j1600-0706201119218x
WillisSWinemillerKampLopez-FernandezH (2005)Habitatstruc-turalcomplexityandmorphologicaldiversityoffishassemblagesinaNeotropicalfloodplainriverOecologia142284ndash295httpsdoiorg101007s00442-004-1723-z
WinemillerKOFleckerASampHoeinghausD J (2010)Patchdy-namicsandenvironmentalheterogeneityinloticecosystemsJournal of the North American Benthological Society29 84ndash99 httpsdoiorg10189908-0481
SUPPORTING INFORMATION
Additional supporting information may be found online in theSupportingInformationsectionattheendofthearticle
How to cite this articleLoacutepez-DelgadoEOWinemillerKOVilla-NavarroFADometacommunitytheoriesexplainspatialvariationinfishassemblagestructureinapristinetropicalriverFreshw Biol 201964367ndash379 httpsdoiorg101111fwb13229
emspensp emsp | emsp371LOacutePEZ- DELGADO Et AL
indicator analysiswas performed using the function Indval of thepackagelabdsv(Roberts2007)intheRstatisticallanguage(Version341)(RCoreTeam2017)
25emsp|emspSpatial variables
Becausefishdispersalinriversisdifficulttoestimateweusedspa-tial predictors as proxies for dispersal potential Spatial eigenvec-torswereusedaspredictors to control for spatial autocorrelationandestimate the influenceof spatialdistanceon speciesdistribu-tionsandpatternsofassemblagestructure(Peres-NetoampLegendre2010) Spatial patternsweremodelled through asymmetric eigen-vectormaps (AEM)anapproachproposedbyBlanchetLegendreandBorcard(2008b)Thismethodtakesintoaccountthedirectionalaspectofinter-sitedistancesofsystemssuchasrivernetworks(egwaterflowrelativeposition)a limitationofmethodssuchasprin-cipal coordinates of neighbour matrices and Moranrsquos eigenvectormaps(BlanchetLegendreMarangerMontiampPepin2011SharmaLegendreDeCaacuteceresampBoisclair2011)
To perform theAEMwe used the distribution of sites acrossthebasintoconstructaconnectiondiagramthatlinkssitestooneanotheraccording topathwayswithin the rivernetwork (Figure1SupportingInformationTableS3)followingtheflowdirectionfromupstreamtodownstreamUsingtheconnectiondiagramasites-by-edgesmatrixwasconstructedandthismatrixwasusedtocalculateasymmetricalspatialeigenfunctionsthroughsingularvaluedecom-positionwhichwereused laterasspatialdescriptorsAEMeigen-functionswerecalculatedusingthefunctionaemfromthepackageadespatial inR (Version341) (Drayetal2017)Toobtainanad-ditional spatial descriptorwemeasured thewatercourse distanceas thedistance fromeachpoint to the rivermouthalong thewa-tercourseusinggeoreferencedsatellite images inArcMap(Version1031)Thisvariableismorerelevanttofishdispersalthanstraight-linedistancethatincludesoverlandsegments(albeitsuchdispersalroutesarepossibleduringtheannualfloodpulse)
26emsp|emspElements of the metacommunity structure
Usingthesites-by-species incidencematrix (excludingrarespeciesthatoccurredatonlyonesite)asinputforRAEMSwereanalysedbasedonspeciesscoresonthefirsttwoaxesToevaluatepatternswithrespecttosixidealiseddistributionalpatterns(1)checkerboard(Diamond1975) (2)nestedsubsets (PattersonampAtmar1986) (3)Clementsian (Clements 1916) (4) Gleasonian (Gleason 1926) (5)evenlyspaced(Tilman1982)and(6)random(Simberloff1983)wefollowedtheframeworkproposedbyLeiboldandMikkelon(2002)andPresleyetal(2010)
Coherencewasassessedbycalculatingthenumberofgapsinspeciesrange(observedabsences)fromtheorderedmatrixfromRAStatisticalsignificanceofcoherencewasevaluatedusingthez-score test comparing observed absenceswith those expectedbasedon1000randomisedsimulationsWheneverobservedab-sencesaregreaterthanexpected(negativecoherence)thereisa
checkerboardpatternConversely ifobservedabsencesare lessthanexpectedunderthenullmodel(positivecoherence)theanal-ysis tests forevidenceofspeciesturnoverandboundaryclump-ing No significant difference between observed and expectedabsences indicates randomdistributions (no coherence) (LeiboldampMikkelson2002)
TurnoverwasevaluatedbycalculatingthenumberofspeciesreplacementsbetweensitesWeusedaz-score test tocompareobserved species replacements with the mean for species re-placements obtained from 1000 null simulations Significantlyfewerobservedreplacementsare indicativeof lowturnoveranddistributionsthatarenestedsubsetswhereasmoreobservedre-placementsindicatehighturnoverFinallyboundaryclumpingwasevaluatedusingMorisitarsquosindexforwhichavalueofoneindicatesthatboundariesarenotclumpedvalueslt1indicateclumpingandlt1indicateshyperdispersionStatisticalsignificanceofMorisitarsquosindexwasdeterminedusingtheχ2 testMore informationaboutinference of idealised patterns can be found in fig1 of Presleyetal(2010)
Weappliedafixedproportionalnullmodel(ier1 null model in MetacommunityfunctioninR)totestsignificanceofcoherenceandturnoverThisnullmodelmaintainsspeciesrichnessofeachsamplingsite but fills species ranges based on theirmarginal probabilitiesRandomsimulatedmatriceswerecalculatedusing1000simulations(Dallas2014)EMSwereassessedusingtheMetacommunity func-tionoftheMetacompackage(Dallas2014)inR
27emsp|emspVariation partitioning
Weusedvariationpartitioninganalysis(Peres-Netoetal2006)asanadditionalmeanstoidentifymetacommunitytypesandtoassesstherelativecontributionofenvironmentalandspatialpredictorsonfishdistributionsatbasinandregionalscalesThismethodallowedus to determine the contribution of environmental conditions in-dependentofspaceandvice versacontrollingfortypeIerrorasaproductofspatialautocorrelationintheenvironmentalcomponent(Peres-NetoampLegendre2010)Type I errormay lead to spuriousconclusions generating significant speciesndashenvironment relation-ships thatareartefactsPartitioninganalysiswasconductedusingthe adjusted R-squared in redundancy analysis on the Hellinger-transformedspecies-by-sitesabundancematrixandtwosetsofpre-dictorsenvironment[E]andspace[S]
To create each set of predictors firstwe reduced the num-berofvariablesineachmatrixbecausetheyreducethestatisticalpowerofthetesttoidentifyuniqueandsignificantenvironmentalandspatialcontributions(Peres-NetoampLegendre2010)Weper-formedavariableselectionforeachsetofpredictorsto identifysignificantvariables(plt05)associatedwiththespecies-by-sitesabundancematrixForthe[E]matrixwetransformedtheenviron-mentalvariablesduetononhomogeneousunitsandverifiedthatthedistributionwasnormalThosevariablesexpressedaspropor-tionsweretransformedtothearcsineoftheirsquarerootThere-mainingvariableswerelog(x+1)transformedwiththeexception
372emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
ofordinal andcategoricaldata forwhichno transformationwasdone Data for all variables were standardised and centred bycalculating z-scores (mean=0 standard deviation=1) (BorcardGilletampLegendre2011FalkeampFausch2010)Thefunctionfor-wardselfromtheRlibraryadespatial(Drayetal2017)wasusedtoperformvariableselectionusing999permutationswithasig-nificance level of p=05Selectedvariablescomprisedtheenvi-ronmentalmatrix[E]usedforthepartitionanalysis
Spatial predictors from the AEM analysis and inter-site dis-tancedataweretestedforinclusioninthespatialmatrix[S]usingtheforwardselfunctionoftheRlibraryadespatialusingthesameapproachasdescribedforthe[E]matrixSelectedvariableswereincludedinthe[S]matrixforthepartitioninganalysisFinallywithourthreedatasets(Hellinger-transformedsites-by-speciesmatrix[E]and [S])weapplied thevarpart functionof thevegan libraryin R to perform variation partitioning analysis as proposed byBlanchetLegendreandBorcard(2008a)andBorcardetal(2011)
Thesignificancelevelsofthecomponentsproducedbythevari-ation partitioning were used to classify the fish metacommunityaccording to one of the four metacommunity paradigms speciessorting mass effect neutral model and patch dynamics (Leiboldetal2004)TochoosetheproperparadigmweappliedthedecisiontreeproposedbyCottenie(2005)
28emsp|emspDrivers of metacommunity structure
We used two approaches to identify the underlying environmen-talandspatialfactorsthatcorrelatewithobservedpatterns inthemetacommunityorganisationat thebasinandregional levelFirstwecalculatedSpearman-rankcorrelationsbetweenthetwodomi-nantaxesextractedfromtheRAused in theEMSframeworkandeachvariablefromthesetofenvironmentalandspatialpredictorsSecond a variable selection procedure was performed for eachgroup (environmentalandspatial)usingthe forwardsel functionoftheRlibraryadespatialCorrelationswerecalculatedusingthefunc-tioncortestofthestatslibraryinR
3emsp |emspRESULTS
High and midndashhigh sections were characterised by higher valuesofdissolvedoxygenelevationdistance fromthemainsourcesa-vannaareaflowandpercentagesofgrassesandfilamentousalgae(Supporting Information Table S2) Channel width water tem-perature and total solids tended tobe lower atupper-basin sitesSubstratumandinstreamcoverwereheterogeneouswithinallfoursectionsSiteslocatedinthelowersectionstendedtohavemoreex-tensiveriparianforestmorelagoonsinadjacentfloodplainswiderchannelsandlowerflowvelocity(SupportingInformationTableS2)
A total of 25928 fish specimens representing 201 species 39familiesand10orderswerecollectedduringthestudySixtyspecieswerecollectedinthehighsection148inthemidndashhigh142inthemidndashlowand67inthelowsectionAveragenumberofspecimenspersite
was762andspeciesrichnessvariedfrom4to55ThemostabundantspecieswereAmazonprattus scintilla(Engraulidae)andtwospeciesofthegenusHemigrammus(Characidae)H elegans and H geisleriThesethreespeciesrepresentednearly30ofthecollectedfishspecimens(Supporting Information Table S4) Fifty-one rare species were col-lectedatsinglesitesSeveralspecieswereidentifiedasindicatorsforthe low (12spp)andhigh (sixspp) sectionsandfewornonewereidentifiedforthemidndashhigh(onesp)andlow(0sp)sections(Table1)
31emsp|emspElements of metacommunity structure
Atthebasinscale(34sites)theEMSrevealedpositivecoherencewithaClementsiandistributionalongbothof thedominantaxesmodel-ling gradientsof fish assemblage structure (RA1andRA2) (Table2Figure2)Thusatabroadspatialscalespeciesseemtorespondasgroupstoenvironmentalfactorsleadingtorelativelydiscreteassem-blagesalongthelongitudinalgradientTheClementsianpatterniden-tified forRA1waspositively correlatedwithchannelwidth streamorderandspatialpredictors(AEM21AEM25)andnegativelycorre-latedwithvariablesassociatedtosubstrateinstreamcoverandlocalriparianvegetation(Table3)ForRA2onlythespatialpredictorAEM1(positive)andflow(negative)werecorrelatedwithsitescores(Table3)
Metacommunitystructurewasanalysedforsiteswithineachof the foursectionsalongthe longitudinal fluvialgradient (highmidndashhighmidndashlowandlow)Assemblagesinthehighandlowsec-tionshadnegativecoherenceandarandompatternforbothRAaxes in thehighsectionandRA1 in the lowsectionRA2 in the
TABLE 1emspSummaryoftheindicatorspeciesanalysisforeachsectionintheBitaBasin
Species Section Indicator value
Hemigrammus schmardae High 059
Parotocinclus eppleyi High 040
Ammocryptocharax elegans High 040
Farlowella vittata High 038
Mastiglanis asopos High 037
Phenacorhamdia anisura High 035
Steindachnerina argentea Midndashhigh 048
Nannostomus unifasciatus Low 089
Microphilypnus ternetzi Low 084
Hemigrammus elegans Low 083
Apistogramma minima Low 066
Brittanichthyssp Low 061
Curimatopsis evelynae Low 060
Hemigrammus analis Low 060
Acaronia vultuosa Low 059
Hemigrammus rhodostomus Low 058
Ochmacanthus alternus Low 058
Acestrorhynchus minimus Low 057
Hemigrammus barrigonae Low 033
Onlyspecieswithstatisticallysignificantvalues(plt005)arelisted
emspensp emsp | emsp373LOacutePEZ- DELGADO Et AL
TABLE 2 emspResultsofEMSanalysisoffishmetacommunitystructureattheleveloftheentireBitaBasinandattheregionallevelforhighmidndashhighmidndashlowandlowsectionsoftheriver
Axis of variation Basin High Midndashhigh Midndashlow Low
Species 145 37 84 85 55
Sites 34 5 12 14 3
Primaryaxis
Coherence
Observedabsences 2506 55 318 453 14
Expectedabsences 3032 41 445 554 14
p-value lt0001 0127 lt0001 0001 09
Turnover
Observedreplacements 347752 543 20498 27534 630
Expectedreplacements 186586 624 14397 20631 621
p-value lt0001 015 lt0001 lt0001 089
Clumping
Morisitarsquosindex 158 102 137 114 1
p-value lt0001 017 lt0001 lt0001 gt0999
Best-fitpatterns Clementsian Random Clementsian Clementsian Random
Secondaryaxis
Coherence
Observedabsences 2706 40 383 541 22
Expectedabsences 3030 4032 447 557 13
p-value 0001 096 003 064 0007
Turnover
Observedreplacements 366210 597 19630 14070 377
Expectedreplacements 186480 622 14397 20697 541
p-value lt0001 065 lt0001 lt0001 0004
Clumping
Morisitarsquosindex 155 136 137 117 1
p-value lt0001 0004 lt0001 lt0001 gt0999
Best-fitpatterns Clementsian Random Clementsian Random Nesteddistribution
Statisticallysignificantvalues(plt005)areshowninboldtype
F IGURE 2 emspSpeciesdistributionsamong34sitesintheBitaBasinorderedaccordingtoscoresonthefirstaxisofthereciprocalaveragingrevealingaClementsiangradientSitesareinrowsspeciesareincolumns
E16E8E7
E17E24E30E20E10E18E33E27E31E9
E26E2E1
E12E4E5
E25E15E34E14E21E32E22E11E23E3
E13E6
E29E28E19
Species
AbsencePresence
374emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
lowsectionrevealedanesteddistributionNosignificantcorrela-tionsbetweenassemblagestructureandenvironmentalorspatialfactorswerefoundforthehighandlowsections(Tables2and3Figure3)
Midndashhigh and midndashlow sections displayed Clementsian pat-terns of assemblage structure for both the first and second RAaxes For the midndashhigh section no significant correlations wereobtained between RA1 and environmental or spatial variableshoweverRA2waspositivelycorrelatedwiththepresenceofroadsandthespatialpredictorAEM1(Tables2and3Figure3)ForthemidndashlowsectionRA1waspositivelycorrelatedwithsubstrateandinstreamcoverandRA2withthespatialpredictorAEM1(Tables2and3Figure3)
32emsp|emspVariation partitioning analysis
Atthebasinscaleallthecomponentsfromvariationpartitioning(ESE+SE|SS|E)explainedsignificant(plt05)variationinfishassem-blagestructuresupportingtheideathatmetacommunitydynamicsinfluencepatternsat that scale (Table4)Around19of the totalexplainedvariation (E+S)wasmodelledbythecombined influenceofenvironmentandspatialpredictors69byapureenvironmentalcomponent(E|S)and46byapurespatialcomponent(S|E)Eighty-onepercentofthevariationwasunexplainedEnvironmentalvaria-tionatthebasinscalewassignificantlyinfluencedbypercentageof
mudsubstratesmallwoodydebrisandwaterconductivity(Table4)Onlyfourof33spatialpredictorsweresignificant(AEM1AEM16AEM18AEM21Table4)
Attheregionalscalethenumberofsiteswithinthehighandlow sections was too small for statistical analysis and only themidndashhigh and midndashlow sections were analysed Only the envi-ronmental component (E) explained significant variation in fishassemblagestructurewithineachofthesesections(Table4)indi-catingthatitwasnotpossibletoinferanymetacommunitymodelIn themidndashhigh section a significant environmental componentinfluenced most strongly by percentage of mud substrate andsmallwoodydebrisexplained16ofassemblagevariationInthemidndashlow section 14of assemblage variationwas explainedbyan environmental componentwith conductivity andpercentageofsmallwoodydebrismostinfluential
33emsp|emspDrivers of fish community structure
The set of variables selected by variation partitioning includedmostof theones thathadhighestSpearman rankcorrelationsAtthe basin level environmental variables related to substrate andinstream coverwere identified by bothmethods (Tables3 and 4)EnvironmentalpredictorssuchaspercentagesofmudsubstrateandsmallwoodydebrisandthespatialpredictorAEM1weresignificantatbothbasinandregionalscales(Tables3and4)
TABLE 3emspSpearman-rankcorrelationsbetweenpredictorsandscoresobtainedfromthefirsttwoaxesfromthereciprocalaveragingordinationofthesites-by-speciesincidencematrixintheelementsofmetacommunitystructureframework
Variables
Basin Midndashhigh Midndashlow
r p r p r p
Primaryaxis
()Mud minus055 lt001 061 002
()Largewoodydebris minus048 lt001
()Smallwoodydebris minus048 lt001 055 004
()Submergedroots minus048 lt001 061 002
()Streamshadedbytreecanopy minus047 lt001 061 002
Width 037 003
Streamorder 052 lt001
AEM21 039 002
AEM25 039 002
Secondaryaxis
()Mud minus071 001
()Largewoodydebris minus066 002
()Smallwoodydebris minus075 lt001
()Streamshadedbytreecanopy minus075 lt001
Flow minus047 lt01
Neartoroads 066 002
AEM1 051 lt01 06 004 069 001
Onlystatisticallysignificantvalues(plt005)areshownNosignificantcorrelationswerefoundforhighandlowsectionsAEMasymmetriceigenvectormaps
emspensp emsp | emsp375LOacutePEZ- DELGADO Et AL
F IGURE 3 emspSpeciesdistributionswithinfourriversectionsorderedaccordingtoscoresonthefirstreciprocalaxis
High
E5
E2
E4
E3
E1
Species
Midminushigh
E16
E8
E7
E9
E14
E17
E10
E15
E12
E11
E13
E6
Species
Midminuslow
E30E20E24E18E26E27E31E25E21E23E22E29E28E19
Species
Low
E33
E34
E32
Species
Absence
Presence
Component
Bita basin Midndashhigh Midndashlow
AdjR2 p AdjR2 p AdjR2 p
E 014 0001 016 0007 014 0002
S 012 0001 000 05 000 056
E+S 019 0001 018 02 014 013
E|S 0069 0001 020 03 016 016
S|E 0046 0025 002 06 000 051
b 0075
R 081 082 086
Variablesselected Mud[E] Smallwoodydebris[E] Conductivity[E] AEM1[S] AEM16[S] AEM18[S] AEM21[S]
Mud[E] Smallwoodydebris[E]
Conductivity[E] Smallwoodydebris[E]
AEMasymmetriceigenvectormapsAdjR2adjustedR2forthepercentageofvariationEenviron-mentalvariationSspatialvariationE+STotalexplainedvariationE|SPureenvironmentalvaria-tion S|E Pure spatial variation b Variation shared by environmental and spatial factorsRUnexplainedvariation(residual)Significantvalues(plt005)areshowninbold
TABLE 4emspVariationpartitioninganalysisforfishassemblagesandselectedgroupsofenvironmentalandspatialvariablesatbasinandregionalscales
376emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
4emsp |emspDISCUSSION
In this study we applied complementary statistical analyses toinvestigate fish species distributions and variation in assemblagestructureacrossalongitudinalfluvialgradienttorevealtherelativeinfluenceoffactorsassociatedwithenvironmentalconditions(eghabitat features environmental filtering) and spatial relationshipsinfluencingdispersalResultsfromtheseanalysesprovidedabasistoinfertherelativeinfluenceofbiotic interactionsandstochasticprocessesincommunityassemblyattwospatialscalesOurresultssuggest that the fishmetacommunity in theBitaRiver exhibits aClementsiandistributionimplyingthatspeciesrespondtotheen-vironmental and fluvial gradient as groups with fairly consistentcompositions (Clements1916)Thispatternalso impliesapoten-tialeffectofenvironmentalfilteringatthescaleoftheentirebasinSimilarlythevariationpartitioninganalysisshowedthatthevaria-tion explainedby the pure environmental componentwas higherthanthepurespatialcomponentwhichalsoisconsistentwithspe-ciessortingSpeciessortingoccurswhenorganismsselecthabitatsthat convey relativelyhigh fitness andor avoidor areotherwiseeliminatedfromhabitatsthatreducetheirfitness(Soininen2014)Thesefindingssupportourpredictionthatatthebasinscaledis-persalratesarelowandassemblagestructureisstronglyinfluencedbyspeciessorting
Ourregional-scaleresultsalsorevealedaClementsiandistribu-tionoflocalassemblagecompositionThispatterncouldhavebeencausedbyspeciesresponsestospatialvariationofabioticandbioticenvironmentalfactorsSpearmancorrelationbetweenenvironmen-talvariablesandsitescoresongradientsofassemblagevariationin-dicatedthatstreamorderandchannelsizehadstrongassociationswithlocalassemblagestructureVariablesassociatedwithsubstratecomposition and instream cover also had significant associationsFishes in theBitaRiver apparently respond to theseenvironmen-talvariablesasrelativelyclumpedgroupsClementsianassemblagestructure has been found in plants (Meynard etal 2013 Willigetal2011)mammals(Loacutepez-GonzaacutelezPresleyLozanoStevensampHiggins 2012PresleyampWillig 2010) andvarious freshwateror-ganismsincludingplanktonmacroinvertebratesandfish(DallasampDrake2014Erősetal2017FernandesHenriques-SilvaPenhaZuanonampPeres-Neto2014TonkinStollJaumlhnigampHaase2016TorresampHiggins2016)
Weproposed that somemetacommunity processes and resul-tantpatternswouldnotbethesameattwodifferentspatialscalesofanalysisWefoundpositivecoherenceandturnoverinupstreamregionsandpositivecoherenceandnegativeturnoverwithnesteddistributionsindownstreamregionsThesepatternswerenotpre-dicteda prioriAttheregionalscaleaClementsiandistributionwasfoundonlyinthemidndashhighandmidndashlowsectionsofthebasinsug-gesting that species responded as groups to environmental filtersmore strongly in these middle sections of longitudinal gradientAssemblage coherence was non-significant (ie not statisticallydifferent from a random distribution) for the high and low sec-tionsoftheriverAccordingtoPresleyetal(2010)non-significant
coherence is not always an indicatorof randomstructuresDallasandDrake(2014)foundthatinmoststudiesinwhichrandompat-ternswerefoundsamplescontainedfewspeciesfewsitesorbothand therefore therewas not enough statistical power to test co-herenceusing randomisationprocedures Inourstudy therewerefewersurveysitesforthehighestandlowestsectionsoftheriverwhichmayaccountfornon-significantcoherenceinthosesectionsNonethelessFigure3revealsapatternofspeciesdistributionwithhigh turnover and boundary clumping in the high section such apatternislessdiscernibleforthelowsection
Inthelowsectionoftheriverdistributionpatternswerediffer-ent for the twoassemblageordinationaxesRandomdistributionswere inferredbasedon the firstordinationaxisandnesteddistri-butionswerefoundforthesecondaxisResultsofthesecondaxissupport our hypothesis that environmental gradients over smallerspatial scales in the low sectionmay promote nested distributionpatternsSitesinthissectionwerecharacterisedbysubstratescom-prised almost entirely of sandwith patches of leaf litter and lowvariation inwater physicochemistryDistribution patternsmay bemorelikelytobenestedwhensamplesizeissmallandenvironmen-talgradientsareshort(Tonkinetal2016)ConverselylargesamplesizesandlongenvironmentalgradientsmayincreasethelikelihoodoffindingClementsianandGleasonianpatterns
At the basin scale the total variation in assemblage structurecapturedbythemodel(19)wasdecomposedinto69purelyen-vironmental 75 shared by environmental and spatial and 46purelyspatialcomponents(eachfractionwithplt0001)Thepureenvironmental component was strongly associated with the per-centage of mud substrate small woody debris and conductivitySharedenvironmentalandspatialfactorsalsowereassociatedwiththepercentageofmudandconductivityThepure spatial compo-nentwas represented by eigenvectors fromAEM predictors thatare not easily interpretable because they integrate multiple spa-tial scales (Peres-Netoamp Legendre 2010)with small-scale spatialvariables tending tobeassociatedwithmasseffectdynamics andlarge-scalespatialvariablestendingtobeassociatedwithdispersallimitation (HeinoMeloampBini2015HeinoMeloSiqueiraetal2015) At the scale of the entire basin both processes probablyoccursimultaneously
Thepercentageofvariationexplainedbyourpartitioninganal-ysiswas low(19)acommonfinding incommunityecologystud-ies (Castillo-Escrivagrave etal 2016 Devercelli Scarabotti MayoraSchneider amp Giri 2016 Erős etal 2017 Legendre amp Legendre2012TerBraakampŠmilauer2012)Thelargeamountofunexplainedvariationcouldbeduetoseveralfactorssuchasfailuretoincludeother relevant environmental variables and spatial predictors orvariablesrelatedtootherprocessessuchasbiotic interactionsOfcoursetherealsocouldbealargeinfluenceofstochasticdynamicsSoininen(2016)reviewed322datasetsandfoundthatspatialpredic-torsobtainedfromspatialeigenvectoranalysisgenerallyexplainedasmall fractionof totalassemblagevariationwhichsuggests thatspatialpredictors fromAEMmayperformpoorly incapturingpat-ternsreflectingdispersaldynamicsMonteiroetal(2017)proposed
emspensp emsp | emsp377LOacutePEZ- DELGADO Et AL
theuseofpatchconnectivitymetricsaspredictorsofdispersaldy-namicsratherthanspatialeigenvectorsTheyfoundthatthepatchconnectivityframeworkincreasedtheamountofexplainedvariationbyasmuchas50
Becausebothpureenvironmentalandpurespatialcomponentswere statistically significant both species sortingandmasseffectdynamics could have influenced fish assemblage structure at thebasin scale (Cottenie 2005) However because the proportionexplained by the pure environmental fractionwas larger than thespatialfraction(69versus46)speciessortingwasprobablythemoreinfluentialcomponentstructuringfishassemblagesinthissys-temTheseresultsareinaccordancewithHeinoMeloampBini(2015)whofoundthatanintermediateamountofdispersalwasneededforthespeciessortingprocesssincespeciesneedtodispersefromoneplace toanother searching forsiteswith theappropriateenviron-mentalconditionstothrive
Soininen(2014)reviewed326investigationsthatusedvariationpartitioning analysis finding that environmental variables usuallyexplainedthemostvariationinassemblagecompositionandspeciessortingwasmostofteninferredSpeciessortingmaybethepreva-lentmetacommunitymodel for river and stream fish assemblages(Cottenie2005FalkeampFausch2010HeinoMeloampBini2015HeinoMeloSiqueiraetal2015)
At a smaller spatial scale we predicted that species sortingstrongly influencesassemblages inheadwaterswherehabitatsarerelativelyisolatedwithintherivernetworkwhereasassemblagesindownstreamreacheswouldhavegreaterdispersalandbemorein-fluencedbymasseffectdynamicsThesepredictionswerenotcon-firmedBasedonvariationpartitioninganalysisandthedecisiontreeofCottenie(2005)noevidencewasobtainedtosupportanyofthemetacommunity paradigmsproposedby Leibold etal (2004) Thevariation partitioning procedure could only be performed for themidndashhighandmidndashlowsectionsthathadsufficientlylargesamplesOnlytheenvironmentalfractionwassignificantandthisresultcanbepronetotypeIerror
Insummaryvariationpartitioningandmetacommunitystructureanalysesprovidedcomplementaryfindingstoinferprocessesstruc-turingfishassemblagesintheBitaRiverBothapproachesidentifiedenvironmentalfilteringandspeciessortingastheprincipalstructur-ingprocessesinthissystemVariationpartitioninganalysisimpliedthatdispersalplaysasignificantroleatthebasinscalehowevertheenvironmentalfractionexplainedmorevariationBothanalysesre-vealedassemblagepatternscorrelatedwithcomponentsofhabitatstructureSimilarconclusionshavebeenreportedfromstudiescon-ducted at smaller spatial scales inother tropical rivers (ArringtonWinemillerampLayman2005WillisWinemillerampLopez-Fernandez2005)with some also inferring that biotic interactionsplay a sig-nificant role in structuring fish assemblages within local habitats(MontantildeaWinemillerampSutton2014) Inastudyof theCinarucoRiveranOrinocotributaryintheVenezuelanLlanoswithcharacter-isticssimilartotheBitaRiverWillisetal(2005)foundthathabitatstructural complexity was strongly correlated with the functionaldiversity of fish assemblages These findings combinedwith ours
suggest that fish community structure of Neotropical rivers andstreams is influencedby localenvironmentalconditionsespeciallyaspectsassociatedwithsubstrateandhabitatstructuralcomplexitythat in turnaffect species sorting that results inClementsianpat-ternsofspeciesdistribution Improvedunderstandingof the influ-enceofdispersalenvironmentalfilteringandbioticinteractionsonspeciesassemblagesinpristinesystemswillbeessentialforeffortstoconserveandrestorebiodiversityForexampleifthespatialdis-tributionoffishesintheBitaRiverderiveslargelyfromdispersalandenvironmental filtering then strategies to conserve fish diversitymustemphasisemaintenanceofhabitatheterogeneityandconnec-tivityatappropriatespatialandtemporalscales
ACKNOWLEDG MENTS
WethankWorldWildlifeFoundation(WWF)ColombiaFundacioacutenOmachaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtandUniversidaddelTolimaforlogisticsandfinancingpartof this studyWealsowould like to thankDTaphornCDoNascimentoJGAlbornozandDMontoyafortheirassistanceinthefieldandlaboratorywork
ORCID
Edwin O Loacutepez-Delgado httpsorcidorg0000-0002-4010-1880
R E FE R E N C E S
AlmeidaRSampCetraM(2016)Longitudinalgradienteffectsonthestream fishmetacommunityNatureza amp Conservaccedilatildeo14 112ndash119httpsdoiorg101016jncon201610001
ArringtonDAWinemillerKOampLaymanCA(2005)CommunityassemblyatthepatchscaleinaspeciesrichtropicalriverOecologia144157ndash167httpsdoiorg101007s00442-005-0014-7
BlanchetFGLegendrePampBorcardD (2008a)Forwardselection of explanatory variables Ecology 89 2623ndash2632 httpsdoiorg 10189007-09861
BlanchetFGLegendrePampBorcardD(2008b)Modellingdirectionalspatialprocesses inecologicaldataEcological Modelling215325ndash336httpsdoiorg101016jecolmodel200804001
BlanchetFGLegendrePMarangerRMontiDampPepinP(2011)Modelling the effect of directional spatial ecological processes atdifferent scalesOecologia166 357ndash368 httpsdoiorg101007s00442-010-1867-y
BorcardDGillet Famp Legendre P (2011)Numerical ecology with R NewYorkSpringerhttpsdoiorg101007978-1-4419-7976-6
Brown B L amp Swan C M (2010) Dendritic network structure constrains metacommunity properties in riverine ecosystems Journal of Animal Ecology 79 571ndash580 httpsdoiorg101111 j1365-2656201001668x
Carvajal-Quintero J D Escobar F Alvarado F Villa-Navarro F AJaramillo-VillaUacuteampMaldonado-OcampoJA (2015)Variation infreshwater fish assemblages along a regional elevation gradient inthenorthernAndesColombiaEcology and Evolution52608ndash2620httpsdoiorg101002ece31539
Carvalho R A amp Tejerina-Garro F L (2015) The influence of en-vironmental variables on the functional structure of headwa-ter stream fish assemblages A study of two tropical basins in
378emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
Central Brazil Neotropical Ichthyology 13 349ndash360 httpsdoiorg1015901982-0224-20130148
Castillo-Escrivagrave A Rueda J Zamora L Hernaacutendez R Del MoralM ampMesquita-Joanes F (2016) The role of watercourse versusoverland dispersal and niche effects on ostracod distribution inMediterraneanstreams(easternIberianPeninsula)Acta Oecologica731ndash9httpsdoiorg101016jactao201602001
ChaseJMKraftNJSmithKGVellendMampInouyeBD(2011)Usingnullmodelstodisentanglevariationincommunitydissimilarityfromvariationinα-diversityEcosphere21ndash11
Clements F E (1916)Plant succession An analysis of the development of vegetationWashingtonDCCarnegieInstitutionofWashingtonhttpsdoiorg105962bhltitle56234
Cottenie K (2005) Integrating environmental and spatial processesin ecological community dynamics Ecology Letters 8 1175ndash1182httpsdoiorg101111j1461-0248200500820x
Dallas T (2014) metacom An R package for the analysis of meta-community structure Ecography 37 402ndash405 httpsdoiorg101111j1600-0587201300695x
DallasTampDrakeJM(2014)RelativeimportanceofenvironmentalgeographicandspatialvariablesonzooplanktonmetacommunitiesEcosphere51ndash13
DatryTMeloASMoyaNZubietaJDeLaBarraEampOberdorffT(2016)MetacommunitypatternsacrossthreeNeotropicalcatch-mentswithvaryingenvironmentalharshnessFreshwater Biology61277ndash292httpsdoiorg101111fwb12702
DevercelliMScarabottiPMayoraGSchneiderBampGiriF(2016)Unravelling the role of determinism and stochasticity in struc-turing the phytoplanktonic metacommunity of the Paranaacute Riverfloodplain Hydrobiologia 764 139ndash156 httpsdoiorg101007s10750-015-2363-5
Diamond JM (1975)Assemblyof species communities InMartinLCodyandJaredMDiamondeditorsEcology and evolution of com-munities(pp342ndash444)CambridgeMassBelknapPressofHarvardUniversityPress
DraySBlanchetGBorcardDGuenardGJombartTLarocqueGhellipWagnerHH(2017)adespatialMultivariatemultiscalespatialanalysisRpackageversion009
DufreneMampLegendreP (1997)Speciesassemblagesand indicatorspecies The need for a flexible asymmetrical approachEcological Monographs67345ndash366
Erős T (2017) Scaling fish metacommunities in stream networksSynthesisandfutureresearchavenuesCommunity Ecology1872ndash86httpsdoiorg10155616820171819
Erős T Takaacutecs P Specziaacuter A SchmeraD amp Saacutely P (2017) Effectof landscapecontextonfishmetacommunitystructuringinstreamnetworksFreshwater Biology62215ndash228httpsdoiorg101111fwb12857
FalkeJAampFauschKD(2010)Frommetapopulationstometacom-munities linking theorywith empirical observations of the spatialpopulationdynamicsofstreamfishesInAmericanFisheriesSocietySymposium(Vol73pp207ndash233)
FernandesIMHenriques-SilvaRPenhaJZuanonJampPeres-NetoPR(2014)Spatiotemporaldynamicsinaseasonalmetacommunitystructure is predictable The case of floodplain-fish communitiesEcography37464ndash475
Gleason H A (1926) The individualistic concept of the plant asso-ciation Bulletin of the Torrey Botanical Club 53 7ndash26 httpsdoiorg1023072479933
Heino JMeloASampBiniLM (2015)Reconceptualising thebetadiversity-environmental heterogeneity relationship in runningwater systems Freshwater Biology 60(2) 223ndash235 httpsdoiorg101111fwb12502
HeinoJMeloASSiqueiraTSoininenJValankoSampBiniLM(2015) Metacommunity organisation spatial extent and dispersal
in aquatic systems Patterns processes and prospects Freshwater Biology60845ndash869httpsdoiorg101111fwb12533
Landeiro V L Magnusson W E Melo A S Espiacuterito-Santo H MV amp Bini L M (2011) Spatial eigenfunction analyses in streamnetworks Do watercourse and overland distances produce dif-ferent results Freshwater Biology 56 1184ndash1192 httpsdoiorg101111j1365-2427201002563x
LegendrePLegendreLampLegendreP(2012)Numerical ecology 3rd EnglishedPierreLegendreandLouisLegendreAmsterdamBostonElsevier
LeiboldMAHolyoakMMouquetNAmarasekarePChaseJMHoopesMFhellipGonzalezA(2004)ThemetacommunityconceptAframeworkformulti-scalecommunityecologyEcology Letters7601ndash613httpsdoiorg101111j1461-0248200400608x
LeiboldMAampMikkelsonGM(2002)Coherencespeciesturnoverand boundary clumping Elements of meta-community structureOikos 97 237ndash250 httpsdoiorg101034j1600-07062002 970210x
Logue J B Mouquet N Peter H Hillebrand H amp TheMetacommunityWorkingGroup (2011)Empirical approaches tometacommunities A review and comparisonwith theoryTrends in Ecology amp Evolution 26 482ndash491 httpsdoiorg101016jtree201104009
Loacutepez-GonzaacutelezCPresleySJLozanoAStevensRDampHigginsCL(2012)MetacommunityanalysisofMexicanbatsEnvironmentallymediatedstructure inanareaofhighgeographicandenvironmen-tal complexity Journal of Biogeography 39 177ndash192 httpsdoiorg101111j1365-2699201102590x
MacarthurRampLevinsR (1967)The limitingsimilarityconvergenceanddivergenceofcoexistingspeciesThe American Naturalist101377ndash385httpsdoiorg101086282505
Meynard C N Lavergne S Boulangeat I Garraud L Van Es JMouquetNampThuillerW(2013)Disentanglingthedriversofmeta-community structure across spatial scales Journal of Biogeography401560ndash1571httpsdoiorg101111jbi12116
MontantildeaCGWinemillerKOampSuttonA(2014)IntercontinentalcomparisonoffishecomorphologyNullmodeltestsofcommunityassembly at thepatch scale in riversEcological Monographs84(1)91ndash107httpsdoiorg10189013-07081
MonteiroVFPaivaPCampPeres-NetoPR (2017)Aquantitativeframework to estimate the relative importance of environmentspatial variation and patch connectivity in driving communitycomposition Journal of Animal Ecology 86 316ndash326 httpsdoiorg1011111365-265612619
Mouillot D Dumay O amp Tomasini J A (2007) Limiting similaritynichefilteringandfunctionaldiversityincoastallagoonfishcommu-nitiesEstuarine Coastal and Shelf Science71443ndash456httpsdoiorg101016jecss200608022
Patterson B D amp Atmar W (1986) Nested subsets and thestructure of insular mammalian faunas and archipelagosBiological Journal of the Linnean Society 28 65ndash82 httpsdoiorg101111j1095-83121986tb01749x
Pease A A Gonzaacutelez-Diacuteaz A A Rodiles-Hernaacutendez R ampWinemiller K O (2012) Functional diversity and traitndashenviron-ment relationships of stream fish assemblages in a large tropi-cal catchment Freshwater Biology 57 1060ndash1075 httpsdoiorg101111j1365-2427201202768x
Peres-Neto P R amp Legendre P (2010) Estimating and con-trolling for spatial structure in the study of ecological commu-nities Global Ecology and Biogeography 19 174ndash184 httpsdoiorg101111j1466-8238200900506x
Peres-NetoPRLegendrePDraySampBorcardD(2006)VariationpartitioningofspeciesdatamatricesEstimationandcomparisonoffractionsEcology872614ndash2625httpsdoiorg1018900012-9658(2006)87[2614vposdm]20co2
emspensp emsp | emsp379LOacutePEZ- DELGADO Et AL
Presley S J Higgins C L ampWillig M R (2010) A comprehensiveframework for the evaluation ofmetacommunity structureOikos119908ndash917httpsdoiorg101111j1600-0706201018544x
Presley S J amp Willig M R (2010) Bat metacommunity structure on Caribbean islands and the role of endemics Global Ecology and Biogeography19185ndash199httpsdoiorg101111j1466-82382009 00505x
RCoreTeam (2017)R A language and environment for statistical com-puting Vienna Austria R Foundation for Statistical ComputingRetrievedfromhttpwwwR-projectorg
RobertsDW (2007) labdsvOrdinationandmultivariateanalysis forecologyR package version1(1)
SharmaSLegendrePDeCaacuteceresMampBoisclairD(2011)Theroleofenvironmentalandspatialprocessesinstructuringnativeandnon-native fish communities across thousands of lakes Ecography 34762ndash771httpsdoiorg101111j1600-0587201006811x
SimberloffD(1983)Competitiontheoryhypothesis-testingandothercommunityecologicalbuzzwordsThe American Naturalist122626ndash635httpsdoiorg101086284163
Soininen J (2014) A quantitative analysis of species sorting acrossorganisms and ecosystems Ecology 95 3284ndash3292 httpsdoiorg10189013-22281
SoininenJ(2016)SpatialstructureinecologicalcommunitiesmdashAquan-titative analysis Oikos 125 160ndash166 httpsdoiorg101111oik02241
TerBraakCampŠmilauerP (2012)Canoco reference manual and userrsquos guide Software for ordination (version 50)IthacaNYMicrocomputerPower
Tilman D (1982) Resource competition and community structure PrincetonNJPrincetonUniversityPress
Tonkin J D Stoll S Jaumlhnig S C amp Haase P (2016) Elements ofmetacommunity structure of river and riparian assemblagesCommunities taxonomic groups and deconstructed trait groupsEcological Complexity 25 35ndash43 httpsdoiorg101016jecocom201512002
TorresKMMampHigginsCL (2016)Taxonomicandfunctionalor-ganizationinmetacommunitystructureofstream-fishassemblagesamongandwithinriverbasinsinTexasAquatic Ecology50247ndash259httpsdoiorg101007s10452-016-9572-5
TrujilloFampLassoCA(2017)IVBiodiversidaddelriacuteoBitaVichadaColombia Serie Editorial Fauna Silvestre Neotropical (p 349)BogotaColombiaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtFundacioacutenOmacha
Vitorino-JuacuteniorOBFernandesRAgostinhoCSampPeliciceFM(2016) Riverine networks constrain β-diversity patterns amongfishassemblagesinalargeNeotropicalriverFreshwater Biology611733ndash1745httpsdoiorg101111fwb12813
Willig M R Presley S J Bloch C P Castro-Arellano I CisnerosL M Higgins C L amp Klingbeil B T (2011) Tropical metacom-munities along elevational gradients Effects of forest type andother environmental factors Oikos 120 1497ndash1508 httpsdoiorg101111j1600-0706201119218x
WillisSWinemillerKampLopez-FernandezH (2005)Habitatstruc-turalcomplexityandmorphologicaldiversityoffishassemblagesinaNeotropicalfloodplainriverOecologia142284ndash295httpsdoiorg101007s00442-004-1723-z
WinemillerKOFleckerASampHoeinghausD J (2010)Patchdy-namicsandenvironmentalheterogeneityinloticecosystemsJournal of the North American Benthological Society29 84ndash99 httpsdoiorg10189908-0481
SUPPORTING INFORMATION
Additional supporting information may be found online in theSupportingInformationsectionattheendofthearticle
How to cite this articleLoacutepez-DelgadoEOWinemillerKOVilla-NavarroFADometacommunitytheoriesexplainspatialvariationinfishassemblagestructureinapristinetropicalriverFreshw Biol 201964367ndash379 httpsdoiorg101111fwb13229
372emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
ofordinal andcategoricaldata forwhichno transformationwasdone Data for all variables were standardised and centred bycalculating z-scores (mean=0 standard deviation=1) (BorcardGilletampLegendre2011FalkeampFausch2010)Thefunctionfor-wardselfromtheRlibraryadespatial(Drayetal2017)wasusedtoperformvariableselectionusing999permutationswithasig-nificance level of p=05Selectedvariablescomprisedtheenvi-ronmentalmatrix[E]usedforthepartitionanalysis
Spatial predictors from the AEM analysis and inter-site dis-tancedataweretestedforinclusioninthespatialmatrix[S]usingtheforwardselfunctionoftheRlibraryadespatialusingthesameapproachasdescribedforthe[E]matrixSelectedvariableswereincludedinthe[S]matrixforthepartitioninganalysisFinallywithourthreedatasets(Hellinger-transformedsites-by-speciesmatrix[E]and [S])weapplied thevarpart functionof thevegan libraryin R to perform variation partitioning analysis as proposed byBlanchetLegendreandBorcard(2008a)andBorcardetal(2011)
Thesignificancelevelsofthecomponentsproducedbythevari-ation partitioning were used to classify the fish metacommunityaccording to one of the four metacommunity paradigms speciessorting mass effect neutral model and patch dynamics (Leiboldetal2004)TochoosetheproperparadigmweappliedthedecisiontreeproposedbyCottenie(2005)
28emsp|emspDrivers of metacommunity structure
We used two approaches to identify the underlying environmen-talandspatialfactorsthatcorrelatewithobservedpatterns inthemetacommunityorganisationat thebasinandregional levelFirstwecalculatedSpearman-rankcorrelationsbetweenthetwodomi-nantaxesextractedfromtheRAused in theEMSframeworkandeachvariablefromthesetofenvironmentalandspatialpredictorsSecond a variable selection procedure was performed for eachgroup (environmentalandspatial)usingthe forwardsel functionoftheRlibraryadespatialCorrelationswerecalculatedusingthefunc-tioncortestofthestatslibraryinR
3emsp |emspRESULTS
High and midndashhigh sections were characterised by higher valuesofdissolvedoxygenelevationdistance fromthemainsourcesa-vannaareaflowandpercentagesofgrassesandfilamentousalgae(Supporting Information Table S2) Channel width water tem-perature and total solids tended tobe lower atupper-basin sitesSubstratumandinstreamcoverwereheterogeneouswithinallfoursectionsSiteslocatedinthelowersectionstendedtohavemoreex-tensiveriparianforestmorelagoonsinadjacentfloodplainswiderchannelsandlowerflowvelocity(SupportingInformationTableS2)
A total of 25928 fish specimens representing 201 species 39familiesand10orderswerecollectedduringthestudySixtyspecieswerecollectedinthehighsection148inthemidndashhigh142inthemidndashlowand67inthelowsectionAveragenumberofspecimenspersite
was762andspeciesrichnessvariedfrom4to55ThemostabundantspecieswereAmazonprattus scintilla(Engraulidae)andtwospeciesofthegenusHemigrammus(Characidae)H elegans and H geisleriThesethreespeciesrepresentednearly30ofthecollectedfishspecimens(Supporting Information Table S4) Fifty-one rare species were col-lectedatsinglesitesSeveralspecieswereidentifiedasindicatorsforthe low (12spp)andhigh (sixspp) sectionsandfewornonewereidentifiedforthemidndashhigh(onesp)andlow(0sp)sections(Table1)
31emsp|emspElements of metacommunity structure
Atthebasinscale(34sites)theEMSrevealedpositivecoherencewithaClementsiandistributionalongbothof thedominantaxesmodel-ling gradientsof fish assemblage structure (RA1andRA2) (Table2Figure2)Thusatabroadspatialscalespeciesseemtorespondasgroupstoenvironmentalfactorsleadingtorelativelydiscreteassem-blagesalongthelongitudinalgradientTheClementsianpatterniden-tified forRA1waspositively correlatedwithchannelwidth streamorderandspatialpredictors(AEM21AEM25)andnegativelycorre-latedwithvariablesassociatedtosubstrateinstreamcoverandlocalriparianvegetation(Table3)ForRA2onlythespatialpredictorAEM1(positive)andflow(negative)werecorrelatedwithsitescores(Table3)
Metacommunitystructurewasanalysedforsiteswithineachof the foursectionsalongthe longitudinal fluvialgradient (highmidndashhighmidndashlowandlow)Assemblagesinthehighandlowsec-tionshadnegativecoherenceandarandompatternforbothRAaxes in thehighsectionandRA1 in the lowsectionRA2 in the
TABLE 1emspSummaryoftheindicatorspeciesanalysisforeachsectionintheBitaBasin
Species Section Indicator value
Hemigrammus schmardae High 059
Parotocinclus eppleyi High 040
Ammocryptocharax elegans High 040
Farlowella vittata High 038
Mastiglanis asopos High 037
Phenacorhamdia anisura High 035
Steindachnerina argentea Midndashhigh 048
Nannostomus unifasciatus Low 089
Microphilypnus ternetzi Low 084
Hemigrammus elegans Low 083
Apistogramma minima Low 066
Brittanichthyssp Low 061
Curimatopsis evelynae Low 060
Hemigrammus analis Low 060
Acaronia vultuosa Low 059
Hemigrammus rhodostomus Low 058
Ochmacanthus alternus Low 058
Acestrorhynchus minimus Low 057
Hemigrammus barrigonae Low 033
Onlyspecieswithstatisticallysignificantvalues(plt005)arelisted
emspensp emsp | emsp373LOacutePEZ- DELGADO Et AL
TABLE 2 emspResultsofEMSanalysisoffishmetacommunitystructureattheleveloftheentireBitaBasinandattheregionallevelforhighmidndashhighmidndashlowandlowsectionsoftheriver
Axis of variation Basin High Midndashhigh Midndashlow Low
Species 145 37 84 85 55
Sites 34 5 12 14 3
Primaryaxis
Coherence
Observedabsences 2506 55 318 453 14
Expectedabsences 3032 41 445 554 14
p-value lt0001 0127 lt0001 0001 09
Turnover
Observedreplacements 347752 543 20498 27534 630
Expectedreplacements 186586 624 14397 20631 621
p-value lt0001 015 lt0001 lt0001 089
Clumping
Morisitarsquosindex 158 102 137 114 1
p-value lt0001 017 lt0001 lt0001 gt0999
Best-fitpatterns Clementsian Random Clementsian Clementsian Random
Secondaryaxis
Coherence
Observedabsences 2706 40 383 541 22
Expectedabsences 3030 4032 447 557 13
p-value 0001 096 003 064 0007
Turnover
Observedreplacements 366210 597 19630 14070 377
Expectedreplacements 186480 622 14397 20697 541
p-value lt0001 065 lt0001 lt0001 0004
Clumping
Morisitarsquosindex 155 136 137 117 1
p-value lt0001 0004 lt0001 lt0001 gt0999
Best-fitpatterns Clementsian Random Clementsian Random Nesteddistribution
Statisticallysignificantvalues(plt005)areshowninboldtype
F IGURE 2 emspSpeciesdistributionsamong34sitesintheBitaBasinorderedaccordingtoscoresonthefirstaxisofthereciprocalaveragingrevealingaClementsiangradientSitesareinrowsspeciesareincolumns
E16E8E7
E17E24E30E20E10E18E33E27E31E9
E26E2E1
E12E4E5
E25E15E34E14E21E32E22E11E23E3
E13E6
E29E28E19
Species
AbsencePresence
374emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
lowsectionrevealedanesteddistributionNosignificantcorrela-tionsbetweenassemblagestructureandenvironmentalorspatialfactorswerefoundforthehighandlowsections(Tables2and3Figure3)
Midndashhigh and midndashlow sections displayed Clementsian pat-terns of assemblage structure for both the first and second RAaxes For the midndashhigh section no significant correlations wereobtained between RA1 and environmental or spatial variableshoweverRA2waspositivelycorrelatedwiththepresenceofroadsandthespatialpredictorAEM1(Tables2and3Figure3)ForthemidndashlowsectionRA1waspositivelycorrelatedwithsubstrateandinstreamcoverandRA2withthespatialpredictorAEM1(Tables2and3Figure3)
32emsp|emspVariation partitioning analysis
Atthebasinscaleallthecomponentsfromvariationpartitioning(ESE+SE|SS|E)explainedsignificant(plt05)variationinfishassem-blagestructuresupportingtheideathatmetacommunitydynamicsinfluencepatternsat that scale (Table4)Around19of the totalexplainedvariation (E+S)wasmodelledbythecombined influenceofenvironmentandspatialpredictors69byapureenvironmentalcomponent(E|S)and46byapurespatialcomponent(S|E)Eighty-onepercentofthevariationwasunexplainedEnvironmentalvaria-tionatthebasinscalewassignificantlyinfluencedbypercentageof
mudsubstratesmallwoodydebrisandwaterconductivity(Table4)Onlyfourof33spatialpredictorsweresignificant(AEM1AEM16AEM18AEM21Table4)
Attheregionalscalethenumberofsiteswithinthehighandlow sections was too small for statistical analysis and only themidndashhigh and midndashlow sections were analysed Only the envi-ronmental component (E) explained significant variation in fishassemblagestructurewithineachofthesesections(Table4)indi-catingthatitwasnotpossibletoinferanymetacommunitymodelIn themidndashhigh section a significant environmental componentinfluenced most strongly by percentage of mud substrate andsmallwoodydebrisexplained16ofassemblagevariationInthemidndashlow section 14of assemblage variationwas explainedbyan environmental componentwith conductivity andpercentageofsmallwoodydebrismostinfluential
33emsp|emspDrivers of fish community structure
The set of variables selected by variation partitioning includedmostof theones thathadhighestSpearman rankcorrelationsAtthe basin level environmental variables related to substrate andinstream coverwere identified by bothmethods (Tables3 and 4)EnvironmentalpredictorssuchaspercentagesofmudsubstrateandsmallwoodydebrisandthespatialpredictorAEM1weresignificantatbothbasinandregionalscales(Tables3and4)
TABLE 3emspSpearman-rankcorrelationsbetweenpredictorsandscoresobtainedfromthefirsttwoaxesfromthereciprocalaveragingordinationofthesites-by-speciesincidencematrixintheelementsofmetacommunitystructureframework
Variables
Basin Midndashhigh Midndashlow
r p r p r p
Primaryaxis
()Mud minus055 lt001 061 002
()Largewoodydebris minus048 lt001
()Smallwoodydebris minus048 lt001 055 004
()Submergedroots minus048 lt001 061 002
()Streamshadedbytreecanopy minus047 lt001 061 002
Width 037 003
Streamorder 052 lt001
AEM21 039 002
AEM25 039 002
Secondaryaxis
()Mud minus071 001
()Largewoodydebris minus066 002
()Smallwoodydebris minus075 lt001
()Streamshadedbytreecanopy minus075 lt001
Flow minus047 lt01
Neartoroads 066 002
AEM1 051 lt01 06 004 069 001
Onlystatisticallysignificantvalues(plt005)areshownNosignificantcorrelationswerefoundforhighandlowsectionsAEMasymmetriceigenvectormaps
emspensp emsp | emsp375LOacutePEZ- DELGADO Et AL
F IGURE 3 emspSpeciesdistributionswithinfourriversectionsorderedaccordingtoscoresonthefirstreciprocalaxis
High
E5
E2
E4
E3
E1
Species
Midminushigh
E16
E8
E7
E9
E14
E17
E10
E15
E12
E11
E13
E6
Species
Midminuslow
E30E20E24E18E26E27E31E25E21E23E22E29E28E19
Species
Low
E33
E34
E32
Species
Absence
Presence
Component
Bita basin Midndashhigh Midndashlow
AdjR2 p AdjR2 p AdjR2 p
E 014 0001 016 0007 014 0002
S 012 0001 000 05 000 056
E+S 019 0001 018 02 014 013
E|S 0069 0001 020 03 016 016
S|E 0046 0025 002 06 000 051
b 0075
R 081 082 086
Variablesselected Mud[E] Smallwoodydebris[E] Conductivity[E] AEM1[S] AEM16[S] AEM18[S] AEM21[S]
Mud[E] Smallwoodydebris[E]
Conductivity[E] Smallwoodydebris[E]
AEMasymmetriceigenvectormapsAdjR2adjustedR2forthepercentageofvariationEenviron-mentalvariationSspatialvariationE+STotalexplainedvariationE|SPureenvironmentalvaria-tion S|E Pure spatial variation b Variation shared by environmental and spatial factorsRUnexplainedvariation(residual)Significantvalues(plt005)areshowninbold
TABLE 4emspVariationpartitioninganalysisforfishassemblagesandselectedgroupsofenvironmentalandspatialvariablesatbasinandregionalscales
376emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
4emsp |emspDISCUSSION
In this study we applied complementary statistical analyses toinvestigate fish species distributions and variation in assemblagestructureacrossalongitudinalfluvialgradienttorevealtherelativeinfluenceoffactorsassociatedwithenvironmentalconditions(eghabitat features environmental filtering) and spatial relationshipsinfluencingdispersalResultsfromtheseanalysesprovidedabasistoinfertherelativeinfluenceofbiotic interactionsandstochasticprocessesincommunityassemblyattwospatialscalesOurresultssuggest that the fishmetacommunity in theBitaRiver exhibits aClementsiandistributionimplyingthatspeciesrespondtotheen-vironmental and fluvial gradient as groups with fairly consistentcompositions (Clements1916)Thispatternalso impliesapoten-tialeffectofenvironmentalfilteringatthescaleoftheentirebasinSimilarlythevariationpartitioninganalysisshowedthatthevaria-tion explainedby the pure environmental componentwas higherthanthepurespatialcomponentwhichalsoisconsistentwithspe-ciessortingSpeciessortingoccurswhenorganismsselecthabitatsthat convey relativelyhigh fitness andor avoidor areotherwiseeliminatedfromhabitatsthatreducetheirfitness(Soininen2014)Thesefindingssupportourpredictionthatatthebasinscaledis-persalratesarelowandassemblagestructureisstronglyinfluencedbyspeciessorting
Ourregional-scaleresultsalsorevealedaClementsiandistribu-tionoflocalassemblagecompositionThispatterncouldhavebeencausedbyspeciesresponsestospatialvariationofabioticandbioticenvironmentalfactorsSpearmancorrelationbetweenenvironmen-talvariablesandsitescoresongradientsofassemblagevariationin-dicatedthatstreamorderandchannelsizehadstrongassociationswithlocalassemblagestructureVariablesassociatedwithsubstratecomposition and instream cover also had significant associationsFishes in theBitaRiver apparently respond to theseenvironmen-talvariablesasrelativelyclumpedgroupsClementsianassemblagestructure has been found in plants (Meynard etal 2013 Willigetal2011)mammals(Loacutepez-GonzaacutelezPresleyLozanoStevensampHiggins 2012PresleyampWillig 2010) andvarious freshwateror-ganismsincludingplanktonmacroinvertebratesandfish(DallasampDrake2014Erősetal2017FernandesHenriques-SilvaPenhaZuanonampPeres-Neto2014TonkinStollJaumlhnigampHaase2016TorresampHiggins2016)
Weproposed that somemetacommunity processes and resul-tantpatternswouldnotbethesameattwodifferentspatialscalesofanalysisWefoundpositivecoherenceandturnoverinupstreamregionsandpositivecoherenceandnegativeturnoverwithnesteddistributionsindownstreamregionsThesepatternswerenotpre-dicteda prioriAttheregionalscaleaClementsiandistributionwasfoundonlyinthemidndashhighandmidndashlowsectionsofthebasinsug-gesting that species responded as groups to environmental filtersmore strongly in these middle sections of longitudinal gradientAssemblage coherence was non-significant (ie not statisticallydifferent from a random distribution) for the high and low sec-tionsoftheriverAccordingtoPresleyetal(2010)non-significant
coherence is not always an indicatorof randomstructuresDallasandDrake(2014)foundthatinmoststudiesinwhichrandompat-ternswerefoundsamplescontainedfewspeciesfewsitesorbothand therefore therewas not enough statistical power to test co-herenceusing randomisationprocedures Inourstudy therewerefewersurveysitesforthehighestandlowestsectionsoftheriverwhichmayaccountfornon-significantcoherenceinthosesectionsNonethelessFigure3revealsapatternofspeciesdistributionwithhigh turnover and boundary clumping in the high section such apatternislessdiscernibleforthelowsection
Inthelowsectionoftheriverdistributionpatternswerediffer-ent for the twoassemblageordinationaxesRandomdistributionswere inferredbasedon the firstordinationaxisandnesteddistri-butionswerefoundforthesecondaxisResultsofthesecondaxissupport our hypothesis that environmental gradients over smallerspatial scales in the low sectionmay promote nested distributionpatternsSitesinthissectionwerecharacterisedbysubstratescom-prised almost entirely of sandwith patches of leaf litter and lowvariation inwater physicochemistryDistribution patternsmay bemorelikelytobenestedwhensamplesizeissmallandenvironmen-talgradientsareshort(Tonkinetal2016)ConverselylargesamplesizesandlongenvironmentalgradientsmayincreasethelikelihoodoffindingClementsianandGleasonianpatterns
At the basin scale the total variation in assemblage structurecapturedbythemodel(19)wasdecomposedinto69purelyen-vironmental 75 shared by environmental and spatial and 46purelyspatialcomponents(eachfractionwithplt0001)Thepureenvironmental component was strongly associated with the per-centage of mud substrate small woody debris and conductivitySharedenvironmentalandspatialfactorsalsowereassociatedwiththepercentageofmudandconductivityThepure spatial compo-nentwas represented by eigenvectors fromAEM predictors thatare not easily interpretable because they integrate multiple spa-tial scales (Peres-Netoamp Legendre 2010)with small-scale spatialvariables tending tobeassociatedwithmasseffectdynamics andlarge-scalespatialvariablestendingtobeassociatedwithdispersallimitation (HeinoMeloampBini2015HeinoMeloSiqueiraetal2015) At the scale of the entire basin both processes probablyoccursimultaneously
Thepercentageofvariationexplainedbyourpartitioninganal-ysiswas low(19)acommonfinding incommunityecologystud-ies (Castillo-Escrivagrave etal 2016 Devercelli Scarabotti MayoraSchneider amp Giri 2016 Erős etal 2017 Legendre amp Legendre2012TerBraakampŠmilauer2012)Thelargeamountofunexplainedvariationcouldbeduetoseveralfactorssuchasfailuretoincludeother relevant environmental variables and spatial predictors orvariablesrelatedtootherprocessessuchasbiotic interactionsOfcoursetherealsocouldbealargeinfluenceofstochasticdynamicsSoininen(2016)reviewed322datasetsandfoundthatspatialpredic-torsobtainedfromspatialeigenvectoranalysisgenerallyexplainedasmall fractionof totalassemblagevariationwhichsuggests thatspatialpredictors fromAEMmayperformpoorly incapturingpat-ternsreflectingdispersaldynamicsMonteiroetal(2017)proposed
emspensp emsp | emsp377LOacutePEZ- DELGADO Et AL
theuseofpatchconnectivitymetricsaspredictorsofdispersaldy-namicsratherthanspatialeigenvectorsTheyfoundthatthepatchconnectivityframeworkincreasedtheamountofexplainedvariationbyasmuchas50
Becausebothpureenvironmentalandpurespatialcomponentswere statistically significant both species sortingandmasseffectdynamics could have influenced fish assemblage structure at thebasin scale (Cottenie 2005) However because the proportionexplained by the pure environmental fractionwas larger than thespatialfraction(69versus46)speciessortingwasprobablythemoreinfluentialcomponentstructuringfishassemblagesinthissys-temTheseresultsareinaccordancewithHeinoMeloampBini(2015)whofoundthatanintermediateamountofdispersalwasneededforthespeciessortingprocesssincespeciesneedtodispersefromoneplace toanother searching forsiteswith theappropriateenviron-mentalconditionstothrive
Soininen(2014)reviewed326investigationsthatusedvariationpartitioning analysis finding that environmental variables usuallyexplainedthemostvariationinassemblagecompositionandspeciessortingwasmostofteninferredSpeciessortingmaybethepreva-lentmetacommunitymodel for river and stream fish assemblages(Cottenie2005FalkeampFausch2010HeinoMeloampBini2015HeinoMeloSiqueiraetal2015)
At a smaller spatial scale we predicted that species sortingstrongly influencesassemblages inheadwaterswherehabitatsarerelativelyisolatedwithintherivernetworkwhereasassemblagesindownstreamreacheswouldhavegreaterdispersalandbemorein-fluencedbymasseffectdynamicsThesepredictionswerenotcon-firmedBasedonvariationpartitioninganalysisandthedecisiontreeofCottenie(2005)noevidencewasobtainedtosupportanyofthemetacommunity paradigmsproposedby Leibold etal (2004) Thevariation partitioning procedure could only be performed for themidndashhighandmidndashlowsectionsthathadsufficientlylargesamplesOnlytheenvironmentalfractionwassignificantandthisresultcanbepronetotypeIerror
Insummaryvariationpartitioningandmetacommunitystructureanalysesprovidedcomplementaryfindingstoinferprocessesstruc-turingfishassemblagesintheBitaRiverBothapproachesidentifiedenvironmentalfilteringandspeciessortingastheprincipalstructur-ingprocessesinthissystemVariationpartitioninganalysisimpliedthatdispersalplaysasignificantroleatthebasinscalehowevertheenvironmentalfractionexplainedmorevariationBothanalysesre-vealedassemblagepatternscorrelatedwithcomponentsofhabitatstructureSimilarconclusionshavebeenreportedfromstudiescon-ducted at smaller spatial scales inother tropical rivers (ArringtonWinemillerampLayman2005WillisWinemillerampLopez-Fernandez2005)with some also inferring that biotic interactionsplay a sig-nificant role in structuring fish assemblages within local habitats(MontantildeaWinemillerampSutton2014) Inastudyof theCinarucoRiveranOrinocotributaryintheVenezuelanLlanoswithcharacter-isticssimilartotheBitaRiverWillisetal(2005)foundthathabitatstructural complexity was strongly correlated with the functionaldiversity of fish assemblages These findings combinedwith ours
suggest that fish community structure of Neotropical rivers andstreams is influencedby localenvironmentalconditionsespeciallyaspectsassociatedwithsubstrateandhabitatstructuralcomplexitythat in turnaffect species sorting that results inClementsianpat-ternsofspeciesdistribution Improvedunderstandingof the influ-enceofdispersalenvironmentalfilteringandbioticinteractionsonspeciesassemblagesinpristinesystemswillbeessentialforeffortstoconserveandrestorebiodiversityForexampleifthespatialdis-tributionoffishesintheBitaRiverderiveslargelyfromdispersalandenvironmental filtering then strategies to conserve fish diversitymustemphasisemaintenanceofhabitatheterogeneityandconnec-tivityatappropriatespatialandtemporalscales
ACKNOWLEDG MENTS
WethankWorldWildlifeFoundation(WWF)ColombiaFundacioacutenOmachaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtandUniversidaddelTolimaforlogisticsandfinancingpartof this studyWealsowould like to thankDTaphornCDoNascimentoJGAlbornozandDMontoyafortheirassistanceinthefieldandlaboratorywork
ORCID
Edwin O Loacutepez-Delgado httpsorcidorg0000-0002-4010-1880
R E FE R E N C E S
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ArringtonDAWinemillerKOampLaymanCA(2005)CommunityassemblyatthepatchscaleinaspeciesrichtropicalriverOecologia144157ndash167httpsdoiorg101007s00442-005-0014-7
BlanchetFGLegendrePampBorcardD (2008a)Forwardselection of explanatory variables Ecology 89 2623ndash2632 httpsdoiorg 10189007-09861
BlanchetFGLegendrePampBorcardD(2008b)Modellingdirectionalspatialprocesses inecologicaldataEcological Modelling215325ndash336httpsdoiorg101016jecolmodel200804001
BlanchetFGLegendrePMarangerRMontiDampPepinP(2011)Modelling the effect of directional spatial ecological processes atdifferent scalesOecologia166 357ndash368 httpsdoiorg101007s00442-010-1867-y
BorcardDGillet Famp Legendre P (2011)Numerical ecology with R NewYorkSpringerhttpsdoiorg101007978-1-4419-7976-6
Brown B L amp Swan C M (2010) Dendritic network structure constrains metacommunity properties in riverine ecosystems Journal of Animal Ecology 79 571ndash580 httpsdoiorg101111 j1365-2656201001668x
Carvajal-Quintero J D Escobar F Alvarado F Villa-Navarro F AJaramillo-VillaUacuteampMaldonado-OcampoJA (2015)Variation infreshwater fish assemblages along a regional elevation gradient inthenorthernAndesColombiaEcology and Evolution52608ndash2620httpsdoiorg101002ece31539
Carvalho R A amp Tejerina-Garro F L (2015) The influence of en-vironmental variables on the functional structure of headwa-ter stream fish assemblages A study of two tropical basins in
378emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
Central Brazil Neotropical Ichthyology 13 349ndash360 httpsdoiorg1015901982-0224-20130148
Castillo-Escrivagrave A Rueda J Zamora L Hernaacutendez R Del MoralM ampMesquita-Joanes F (2016) The role of watercourse versusoverland dispersal and niche effects on ostracod distribution inMediterraneanstreams(easternIberianPeninsula)Acta Oecologica731ndash9httpsdoiorg101016jactao201602001
ChaseJMKraftNJSmithKGVellendMampInouyeBD(2011)Usingnullmodelstodisentanglevariationincommunitydissimilarityfromvariationinα-diversityEcosphere21ndash11
Clements F E (1916)Plant succession An analysis of the development of vegetationWashingtonDCCarnegieInstitutionofWashingtonhttpsdoiorg105962bhltitle56234
Cottenie K (2005) Integrating environmental and spatial processesin ecological community dynamics Ecology Letters 8 1175ndash1182httpsdoiorg101111j1461-0248200500820x
Dallas T (2014) metacom An R package for the analysis of meta-community structure Ecography 37 402ndash405 httpsdoiorg101111j1600-0587201300695x
DallasTampDrakeJM(2014)RelativeimportanceofenvironmentalgeographicandspatialvariablesonzooplanktonmetacommunitiesEcosphere51ndash13
DatryTMeloASMoyaNZubietaJDeLaBarraEampOberdorffT(2016)MetacommunitypatternsacrossthreeNeotropicalcatch-mentswithvaryingenvironmentalharshnessFreshwater Biology61277ndash292httpsdoiorg101111fwb12702
DevercelliMScarabottiPMayoraGSchneiderBampGiriF(2016)Unravelling the role of determinism and stochasticity in struc-turing the phytoplanktonic metacommunity of the Paranaacute Riverfloodplain Hydrobiologia 764 139ndash156 httpsdoiorg101007s10750-015-2363-5
Diamond JM (1975)Assemblyof species communities InMartinLCodyandJaredMDiamondeditorsEcology and evolution of com-munities(pp342ndash444)CambridgeMassBelknapPressofHarvardUniversityPress
DraySBlanchetGBorcardDGuenardGJombartTLarocqueGhellipWagnerHH(2017)adespatialMultivariatemultiscalespatialanalysisRpackageversion009
DufreneMampLegendreP (1997)Speciesassemblagesand indicatorspecies The need for a flexible asymmetrical approachEcological Monographs67345ndash366
Erős T (2017) Scaling fish metacommunities in stream networksSynthesisandfutureresearchavenuesCommunity Ecology1872ndash86httpsdoiorg10155616820171819
Erős T Takaacutecs P Specziaacuter A SchmeraD amp Saacutely P (2017) Effectof landscapecontextonfishmetacommunitystructuringinstreamnetworksFreshwater Biology62215ndash228httpsdoiorg101111fwb12857
FalkeJAampFauschKD(2010)Frommetapopulationstometacom-munities linking theorywith empirical observations of the spatialpopulationdynamicsofstreamfishesInAmericanFisheriesSocietySymposium(Vol73pp207ndash233)
FernandesIMHenriques-SilvaRPenhaJZuanonJampPeres-NetoPR(2014)Spatiotemporaldynamicsinaseasonalmetacommunitystructure is predictable The case of floodplain-fish communitiesEcography37464ndash475
Gleason H A (1926) The individualistic concept of the plant asso-ciation Bulletin of the Torrey Botanical Club 53 7ndash26 httpsdoiorg1023072479933
Heino JMeloASampBiniLM (2015)Reconceptualising thebetadiversity-environmental heterogeneity relationship in runningwater systems Freshwater Biology 60(2) 223ndash235 httpsdoiorg101111fwb12502
HeinoJMeloASSiqueiraTSoininenJValankoSampBiniLM(2015) Metacommunity organisation spatial extent and dispersal
in aquatic systems Patterns processes and prospects Freshwater Biology60845ndash869httpsdoiorg101111fwb12533
Landeiro V L Magnusson W E Melo A S Espiacuterito-Santo H MV amp Bini L M (2011) Spatial eigenfunction analyses in streamnetworks Do watercourse and overland distances produce dif-ferent results Freshwater Biology 56 1184ndash1192 httpsdoiorg101111j1365-2427201002563x
LegendrePLegendreLampLegendreP(2012)Numerical ecology 3rd EnglishedPierreLegendreandLouisLegendreAmsterdamBostonElsevier
LeiboldMAHolyoakMMouquetNAmarasekarePChaseJMHoopesMFhellipGonzalezA(2004)ThemetacommunityconceptAframeworkformulti-scalecommunityecologyEcology Letters7601ndash613httpsdoiorg101111j1461-0248200400608x
LeiboldMAampMikkelsonGM(2002)Coherencespeciesturnoverand boundary clumping Elements of meta-community structureOikos 97 237ndash250 httpsdoiorg101034j1600-07062002 970210x
Logue J B Mouquet N Peter H Hillebrand H amp TheMetacommunityWorkingGroup (2011)Empirical approaches tometacommunities A review and comparisonwith theoryTrends in Ecology amp Evolution 26 482ndash491 httpsdoiorg101016jtree201104009
Loacutepez-GonzaacutelezCPresleySJLozanoAStevensRDampHigginsCL(2012)MetacommunityanalysisofMexicanbatsEnvironmentallymediatedstructure inanareaofhighgeographicandenvironmen-tal complexity Journal of Biogeography 39 177ndash192 httpsdoiorg101111j1365-2699201102590x
MacarthurRampLevinsR (1967)The limitingsimilarityconvergenceanddivergenceofcoexistingspeciesThe American Naturalist101377ndash385httpsdoiorg101086282505
Meynard C N Lavergne S Boulangeat I Garraud L Van Es JMouquetNampThuillerW(2013)Disentanglingthedriversofmeta-community structure across spatial scales Journal of Biogeography401560ndash1571httpsdoiorg101111jbi12116
MontantildeaCGWinemillerKOampSuttonA(2014)IntercontinentalcomparisonoffishecomorphologyNullmodeltestsofcommunityassembly at thepatch scale in riversEcological Monographs84(1)91ndash107httpsdoiorg10189013-07081
MonteiroVFPaivaPCampPeres-NetoPR (2017)Aquantitativeframework to estimate the relative importance of environmentspatial variation and patch connectivity in driving communitycomposition Journal of Animal Ecology 86 316ndash326 httpsdoiorg1011111365-265612619
Mouillot D Dumay O amp Tomasini J A (2007) Limiting similaritynichefilteringandfunctionaldiversityincoastallagoonfishcommu-nitiesEstuarine Coastal and Shelf Science71443ndash456httpsdoiorg101016jecss200608022
Patterson B D amp Atmar W (1986) Nested subsets and thestructure of insular mammalian faunas and archipelagosBiological Journal of the Linnean Society 28 65ndash82 httpsdoiorg101111j1095-83121986tb01749x
Pease A A Gonzaacutelez-Diacuteaz A A Rodiles-Hernaacutendez R ampWinemiller K O (2012) Functional diversity and traitndashenviron-ment relationships of stream fish assemblages in a large tropi-cal catchment Freshwater Biology 57 1060ndash1075 httpsdoiorg101111j1365-2427201202768x
Peres-Neto P R amp Legendre P (2010) Estimating and con-trolling for spatial structure in the study of ecological commu-nities Global Ecology and Biogeography 19 174ndash184 httpsdoiorg101111j1466-8238200900506x
Peres-NetoPRLegendrePDraySampBorcardD(2006)VariationpartitioningofspeciesdatamatricesEstimationandcomparisonoffractionsEcology872614ndash2625httpsdoiorg1018900012-9658(2006)87[2614vposdm]20co2
emspensp emsp | emsp379LOacutePEZ- DELGADO Et AL
Presley S J Higgins C L ampWillig M R (2010) A comprehensiveframework for the evaluation ofmetacommunity structureOikos119908ndash917httpsdoiorg101111j1600-0706201018544x
Presley S J amp Willig M R (2010) Bat metacommunity structure on Caribbean islands and the role of endemics Global Ecology and Biogeography19185ndash199httpsdoiorg101111j1466-82382009 00505x
RCoreTeam (2017)R A language and environment for statistical com-puting Vienna Austria R Foundation for Statistical ComputingRetrievedfromhttpwwwR-projectorg
RobertsDW (2007) labdsvOrdinationandmultivariateanalysis forecologyR package version1(1)
SharmaSLegendrePDeCaacuteceresMampBoisclairD(2011)Theroleofenvironmentalandspatialprocessesinstructuringnativeandnon-native fish communities across thousands of lakes Ecography 34762ndash771httpsdoiorg101111j1600-0587201006811x
SimberloffD(1983)Competitiontheoryhypothesis-testingandothercommunityecologicalbuzzwordsThe American Naturalist122626ndash635httpsdoiorg101086284163
Soininen J (2014) A quantitative analysis of species sorting acrossorganisms and ecosystems Ecology 95 3284ndash3292 httpsdoiorg10189013-22281
SoininenJ(2016)SpatialstructureinecologicalcommunitiesmdashAquan-titative analysis Oikos 125 160ndash166 httpsdoiorg101111oik02241
TerBraakCampŠmilauerP (2012)Canoco reference manual and userrsquos guide Software for ordination (version 50)IthacaNYMicrocomputerPower
Tilman D (1982) Resource competition and community structure PrincetonNJPrincetonUniversityPress
Tonkin J D Stoll S Jaumlhnig S C amp Haase P (2016) Elements ofmetacommunity structure of river and riparian assemblagesCommunities taxonomic groups and deconstructed trait groupsEcological Complexity 25 35ndash43 httpsdoiorg101016jecocom201512002
TorresKMMampHigginsCL (2016)Taxonomicandfunctionalor-ganizationinmetacommunitystructureofstream-fishassemblagesamongandwithinriverbasinsinTexasAquatic Ecology50247ndash259httpsdoiorg101007s10452-016-9572-5
TrujilloFampLassoCA(2017)IVBiodiversidaddelriacuteoBitaVichadaColombia Serie Editorial Fauna Silvestre Neotropical (p 349)BogotaColombiaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtFundacioacutenOmacha
Vitorino-JuacuteniorOBFernandesRAgostinhoCSampPeliciceFM(2016) Riverine networks constrain β-diversity patterns amongfishassemblagesinalargeNeotropicalriverFreshwater Biology611733ndash1745httpsdoiorg101111fwb12813
Willig M R Presley S J Bloch C P Castro-Arellano I CisnerosL M Higgins C L amp Klingbeil B T (2011) Tropical metacom-munities along elevational gradients Effects of forest type andother environmental factors Oikos 120 1497ndash1508 httpsdoiorg101111j1600-0706201119218x
WillisSWinemillerKampLopez-FernandezH (2005)Habitatstruc-turalcomplexityandmorphologicaldiversityoffishassemblagesinaNeotropicalfloodplainriverOecologia142284ndash295httpsdoiorg101007s00442-004-1723-z
WinemillerKOFleckerASampHoeinghausD J (2010)Patchdy-namicsandenvironmentalheterogeneityinloticecosystemsJournal of the North American Benthological Society29 84ndash99 httpsdoiorg10189908-0481
SUPPORTING INFORMATION
Additional supporting information may be found online in theSupportingInformationsectionattheendofthearticle
How to cite this articleLoacutepez-DelgadoEOWinemillerKOVilla-NavarroFADometacommunitytheoriesexplainspatialvariationinfishassemblagestructureinapristinetropicalriverFreshw Biol 201964367ndash379 httpsdoiorg101111fwb13229
emspensp emsp | emsp373LOacutePEZ- DELGADO Et AL
TABLE 2 emspResultsofEMSanalysisoffishmetacommunitystructureattheleveloftheentireBitaBasinandattheregionallevelforhighmidndashhighmidndashlowandlowsectionsoftheriver
Axis of variation Basin High Midndashhigh Midndashlow Low
Species 145 37 84 85 55
Sites 34 5 12 14 3
Primaryaxis
Coherence
Observedabsences 2506 55 318 453 14
Expectedabsences 3032 41 445 554 14
p-value lt0001 0127 lt0001 0001 09
Turnover
Observedreplacements 347752 543 20498 27534 630
Expectedreplacements 186586 624 14397 20631 621
p-value lt0001 015 lt0001 lt0001 089
Clumping
Morisitarsquosindex 158 102 137 114 1
p-value lt0001 017 lt0001 lt0001 gt0999
Best-fitpatterns Clementsian Random Clementsian Clementsian Random
Secondaryaxis
Coherence
Observedabsences 2706 40 383 541 22
Expectedabsences 3030 4032 447 557 13
p-value 0001 096 003 064 0007
Turnover
Observedreplacements 366210 597 19630 14070 377
Expectedreplacements 186480 622 14397 20697 541
p-value lt0001 065 lt0001 lt0001 0004
Clumping
Morisitarsquosindex 155 136 137 117 1
p-value lt0001 0004 lt0001 lt0001 gt0999
Best-fitpatterns Clementsian Random Clementsian Random Nesteddistribution
Statisticallysignificantvalues(plt005)areshowninboldtype
F IGURE 2 emspSpeciesdistributionsamong34sitesintheBitaBasinorderedaccordingtoscoresonthefirstaxisofthereciprocalaveragingrevealingaClementsiangradientSitesareinrowsspeciesareincolumns
E16E8E7
E17E24E30E20E10E18E33E27E31E9
E26E2E1
E12E4E5
E25E15E34E14E21E32E22E11E23E3
E13E6
E29E28E19
Species
AbsencePresence
374emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
lowsectionrevealedanesteddistributionNosignificantcorrela-tionsbetweenassemblagestructureandenvironmentalorspatialfactorswerefoundforthehighandlowsections(Tables2and3Figure3)
Midndashhigh and midndashlow sections displayed Clementsian pat-terns of assemblage structure for both the first and second RAaxes For the midndashhigh section no significant correlations wereobtained between RA1 and environmental or spatial variableshoweverRA2waspositivelycorrelatedwiththepresenceofroadsandthespatialpredictorAEM1(Tables2and3Figure3)ForthemidndashlowsectionRA1waspositivelycorrelatedwithsubstrateandinstreamcoverandRA2withthespatialpredictorAEM1(Tables2and3Figure3)
32emsp|emspVariation partitioning analysis
Atthebasinscaleallthecomponentsfromvariationpartitioning(ESE+SE|SS|E)explainedsignificant(plt05)variationinfishassem-blagestructuresupportingtheideathatmetacommunitydynamicsinfluencepatternsat that scale (Table4)Around19of the totalexplainedvariation (E+S)wasmodelledbythecombined influenceofenvironmentandspatialpredictors69byapureenvironmentalcomponent(E|S)and46byapurespatialcomponent(S|E)Eighty-onepercentofthevariationwasunexplainedEnvironmentalvaria-tionatthebasinscalewassignificantlyinfluencedbypercentageof
mudsubstratesmallwoodydebrisandwaterconductivity(Table4)Onlyfourof33spatialpredictorsweresignificant(AEM1AEM16AEM18AEM21Table4)
Attheregionalscalethenumberofsiteswithinthehighandlow sections was too small for statistical analysis and only themidndashhigh and midndashlow sections were analysed Only the envi-ronmental component (E) explained significant variation in fishassemblagestructurewithineachofthesesections(Table4)indi-catingthatitwasnotpossibletoinferanymetacommunitymodelIn themidndashhigh section a significant environmental componentinfluenced most strongly by percentage of mud substrate andsmallwoodydebrisexplained16ofassemblagevariationInthemidndashlow section 14of assemblage variationwas explainedbyan environmental componentwith conductivity andpercentageofsmallwoodydebrismostinfluential
33emsp|emspDrivers of fish community structure
The set of variables selected by variation partitioning includedmostof theones thathadhighestSpearman rankcorrelationsAtthe basin level environmental variables related to substrate andinstream coverwere identified by bothmethods (Tables3 and 4)EnvironmentalpredictorssuchaspercentagesofmudsubstrateandsmallwoodydebrisandthespatialpredictorAEM1weresignificantatbothbasinandregionalscales(Tables3and4)
TABLE 3emspSpearman-rankcorrelationsbetweenpredictorsandscoresobtainedfromthefirsttwoaxesfromthereciprocalaveragingordinationofthesites-by-speciesincidencematrixintheelementsofmetacommunitystructureframework
Variables
Basin Midndashhigh Midndashlow
r p r p r p
Primaryaxis
()Mud minus055 lt001 061 002
()Largewoodydebris minus048 lt001
()Smallwoodydebris minus048 lt001 055 004
()Submergedroots minus048 lt001 061 002
()Streamshadedbytreecanopy minus047 lt001 061 002
Width 037 003
Streamorder 052 lt001
AEM21 039 002
AEM25 039 002
Secondaryaxis
()Mud minus071 001
()Largewoodydebris minus066 002
()Smallwoodydebris minus075 lt001
()Streamshadedbytreecanopy minus075 lt001
Flow minus047 lt01
Neartoroads 066 002
AEM1 051 lt01 06 004 069 001
Onlystatisticallysignificantvalues(plt005)areshownNosignificantcorrelationswerefoundforhighandlowsectionsAEMasymmetriceigenvectormaps
emspensp emsp | emsp375LOacutePEZ- DELGADO Et AL
F IGURE 3 emspSpeciesdistributionswithinfourriversectionsorderedaccordingtoscoresonthefirstreciprocalaxis
High
E5
E2
E4
E3
E1
Species
Midminushigh
E16
E8
E7
E9
E14
E17
E10
E15
E12
E11
E13
E6
Species
Midminuslow
E30E20E24E18E26E27E31E25E21E23E22E29E28E19
Species
Low
E33
E34
E32
Species
Absence
Presence
Component
Bita basin Midndashhigh Midndashlow
AdjR2 p AdjR2 p AdjR2 p
E 014 0001 016 0007 014 0002
S 012 0001 000 05 000 056
E+S 019 0001 018 02 014 013
E|S 0069 0001 020 03 016 016
S|E 0046 0025 002 06 000 051
b 0075
R 081 082 086
Variablesselected Mud[E] Smallwoodydebris[E] Conductivity[E] AEM1[S] AEM16[S] AEM18[S] AEM21[S]
Mud[E] Smallwoodydebris[E]
Conductivity[E] Smallwoodydebris[E]
AEMasymmetriceigenvectormapsAdjR2adjustedR2forthepercentageofvariationEenviron-mentalvariationSspatialvariationE+STotalexplainedvariationE|SPureenvironmentalvaria-tion S|E Pure spatial variation b Variation shared by environmental and spatial factorsRUnexplainedvariation(residual)Significantvalues(plt005)areshowninbold
TABLE 4emspVariationpartitioninganalysisforfishassemblagesandselectedgroupsofenvironmentalandspatialvariablesatbasinandregionalscales
376emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
4emsp |emspDISCUSSION
In this study we applied complementary statistical analyses toinvestigate fish species distributions and variation in assemblagestructureacrossalongitudinalfluvialgradienttorevealtherelativeinfluenceoffactorsassociatedwithenvironmentalconditions(eghabitat features environmental filtering) and spatial relationshipsinfluencingdispersalResultsfromtheseanalysesprovidedabasistoinfertherelativeinfluenceofbiotic interactionsandstochasticprocessesincommunityassemblyattwospatialscalesOurresultssuggest that the fishmetacommunity in theBitaRiver exhibits aClementsiandistributionimplyingthatspeciesrespondtotheen-vironmental and fluvial gradient as groups with fairly consistentcompositions (Clements1916)Thispatternalso impliesapoten-tialeffectofenvironmentalfilteringatthescaleoftheentirebasinSimilarlythevariationpartitioninganalysisshowedthatthevaria-tion explainedby the pure environmental componentwas higherthanthepurespatialcomponentwhichalsoisconsistentwithspe-ciessortingSpeciessortingoccurswhenorganismsselecthabitatsthat convey relativelyhigh fitness andor avoidor areotherwiseeliminatedfromhabitatsthatreducetheirfitness(Soininen2014)Thesefindingssupportourpredictionthatatthebasinscaledis-persalratesarelowandassemblagestructureisstronglyinfluencedbyspeciessorting
Ourregional-scaleresultsalsorevealedaClementsiandistribu-tionoflocalassemblagecompositionThispatterncouldhavebeencausedbyspeciesresponsestospatialvariationofabioticandbioticenvironmentalfactorsSpearmancorrelationbetweenenvironmen-talvariablesandsitescoresongradientsofassemblagevariationin-dicatedthatstreamorderandchannelsizehadstrongassociationswithlocalassemblagestructureVariablesassociatedwithsubstratecomposition and instream cover also had significant associationsFishes in theBitaRiver apparently respond to theseenvironmen-talvariablesasrelativelyclumpedgroupsClementsianassemblagestructure has been found in plants (Meynard etal 2013 Willigetal2011)mammals(Loacutepez-GonzaacutelezPresleyLozanoStevensampHiggins 2012PresleyampWillig 2010) andvarious freshwateror-ganismsincludingplanktonmacroinvertebratesandfish(DallasampDrake2014Erősetal2017FernandesHenriques-SilvaPenhaZuanonampPeres-Neto2014TonkinStollJaumlhnigampHaase2016TorresampHiggins2016)
Weproposed that somemetacommunity processes and resul-tantpatternswouldnotbethesameattwodifferentspatialscalesofanalysisWefoundpositivecoherenceandturnoverinupstreamregionsandpositivecoherenceandnegativeturnoverwithnesteddistributionsindownstreamregionsThesepatternswerenotpre-dicteda prioriAttheregionalscaleaClementsiandistributionwasfoundonlyinthemidndashhighandmidndashlowsectionsofthebasinsug-gesting that species responded as groups to environmental filtersmore strongly in these middle sections of longitudinal gradientAssemblage coherence was non-significant (ie not statisticallydifferent from a random distribution) for the high and low sec-tionsoftheriverAccordingtoPresleyetal(2010)non-significant
coherence is not always an indicatorof randomstructuresDallasandDrake(2014)foundthatinmoststudiesinwhichrandompat-ternswerefoundsamplescontainedfewspeciesfewsitesorbothand therefore therewas not enough statistical power to test co-herenceusing randomisationprocedures Inourstudy therewerefewersurveysitesforthehighestandlowestsectionsoftheriverwhichmayaccountfornon-significantcoherenceinthosesectionsNonethelessFigure3revealsapatternofspeciesdistributionwithhigh turnover and boundary clumping in the high section such apatternislessdiscernibleforthelowsection
Inthelowsectionoftheriverdistributionpatternswerediffer-ent for the twoassemblageordinationaxesRandomdistributionswere inferredbasedon the firstordinationaxisandnesteddistri-butionswerefoundforthesecondaxisResultsofthesecondaxissupport our hypothesis that environmental gradients over smallerspatial scales in the low sectionmay promote nested distributionpatternsSitesinthissectionwerecharacterisedbysubstratescom-prised almost entirely of sandwith patches of leaf litter and lowvariation inwater physicochemistryDistribution patternsmay bemorelikelytobenestedwhensamplesizeissmallandenvironmen-talgradientsareshort(Tonkinetal2016)ConverselylargesamplesizesandlongenvironmentalgradientsmayincreasethelikelihoodoffindingClementsianandGleasonianpatterns
At the basin scale the total variation in assemblage structurecapturedbythemodel(19)wasdecomposedinto69purelyen-vironmental 75 shared by environmental and spatial and 46purelyspatialcomponents(eachfractionwithplt0001)Thepureenvironmental component was strongly associated with the per-centage of mud substrate small woody debris and conductivitySharedenvironmentalandspatialfactorsalsowereassociatedwiththepercentageofmudandconductivityThepure spatial compo-nentwas represented by eigenvectors fromAEM predictors thatare not easily interpretable because they integrate multiple spa-tial scales (Peres-Netoamp Legendre 2010)with small-scale spatialvariables tending tobeassociatedwithmasseffectdynamics andlarge-scalespatialvariablestendingtobeassociatedwithdispersallimitation (HeinoMeloampBini2015HeinoMeloSiqueiraetal2015) At the scale of the entire basin both processes probablyoccursimultaneously
Thepercentageofvariationexplainedbyourpartitioninganal-ysiswas low(19)acommonfinding incommunityecologystud-ies (Castillo-Escrivagrave etal 2016 Devercelli Scarabotti MayoraSchneider amp Giri 2016 Erős etal 2017 Legendre amp Legendre2012TerBraakampŠmilauer2012)Thelargeamountofunexplainedvariationcouldbeduetoseveralfactorssuchasfailuretoincludeother relevant environmental variables and spatial predictors orvariablesrelatedtootherprocessessuchasbiotic interactionsOfcoursetherealsocouldbealargeinfluenceofstochasticdynamicsSoininen(2016)reviewed322datasetsandfoundthatspatialpredic-torsobtainedfromspatialeigenvectoranalysisgenerallyexplainedasmall fractionof totalassemblagevariationwhichsuggests thatspatialpredictors fromAEMmayperformpoorly incapturingpat-ternsreflectingdispersaldynamicsMonteiroetal(2017)proposed
emspensp emsp | emsp377LOacutePEZ- DELGADO Et AL
theuseofpatchconnectivitymetricsaspredictorsofdispersaldy-namicsratherthanspatialeigenvectorsTheyfoundthatthepatchconnectivityframeworkincreasedtheamountofexplainedvariationbyasmuchas50
Becausebothpureenvironmentalandpurespatialcomponentswere statistically significant both species sortingandmasseffectdynamics could have influenced fish assemblage structure at thebasin scale (Cottenie 2005) However because the proportionexplained by the pure environmental fractionwas larger than thespatialfraction(69versus46)speciessortingwasprobablythemoreinfluentialcomponentstructuringfishassemblagesinthissys-temTheseresultsareinaccordancewithHeinoMeloampBini(2015)whofoundthatanintermediateamountofdispersalwasneededforthespeciessortingprocesssincespeciesneedtodispersefromoneplace toanother searching forsiteswith theappropriateenviron-mentalconditionstothrive
Soininen(2014)reviewed326investigationsthatusedvariationpartitioning analysis finding that environmental variables usuallyexplainedthemostvariationinassemblagecompositionandspeciessortingwasmostofteninferredSpeciessortingmaybethepreva-lentmetacommunitymodel for river and stream fish assemblages(Cottenie2005FalkeampFausch2010HeinoMeloampBini2015HeinoMeloSiqueiraetal2015)
At a smaller spatial scale we predicted that species sortingstrongly influencesassemblages inheadwaterswherehabitatsarerelativelyisolatedwithintherivernetworkwhereasassemblagesindownstreamreacheswouldhavegreaterdispersalandbemorein-fluencedbymasseffectdynamicsThesepredictionswerenotcon-firmedBasedonvariationpartitioninganalysisandthedecisiontreeofCottenie(2005)noevidencewasobtainedtosupportanyofthemetacommunity paradigmsproposedby Leibold etal (2004) Thevariation partitioning procedure could only be performed for themidndashhighandmidndashlowsectionsthathadsufficientlylargesamplesOnlytheenvironmentalfractionwassignificantandthisresultcanbepronetotypeIerror
Insummaryvariationpartitioningandmetacommunitystructureanalysesprovidedcomplementaryfindingstoinferprocessesstruc-turingfishassemblagesintheBitaRiverBothapproachesidentifiedenvironmentalfilteringandspeciessortingastheprincipalstructur-ingprocessesinthissystemVariationpartitioninganalysisimpliedthatdispersalplaysasignificantroleatthebasinscalehowevertheenvironmentalfractionexplainedmorevariationBothanalysesre-vealedassemblagepatternscorrelatedwithcomponentsofhabitatstructureSimilarconclusionshavebeenreportedfromstudiescon-ducted at smaller spatial scales inother tropical rivers (ArringtonWinemillerampLayman2005WillisWinemillerampLopez-Fernandez2005)with some also inferring that biotic interactionsplay a sig-nificant role in structuring fish assemblages within local habitats(MontantildeaWinemillerampSutton2014) Inastudyof theCinarucoRiveranOrinocotributaryintheVenezuelanLlanoswithcharacter-isticssimilartotheBitaRiverWillisetal(2005)foundthathabitatstructural complexity was strongly correlated with the functionaldiversity of fish assemblages These findings combinedwith ours
suggest that fish community structure of Neotropical rivers andstreams is influencedby localenvironmentalconditionsespeciallyaspectsassociatedwithsubstrateandhabitatstructuralcomplexitythat in turnaffect species sorting that results inClementsianpat-ternsofspeciesdistribution Improvedunderstandingof the influ-enceofdispersalenvironmentalfilteringandbioticinteractionsonspeciesassemblagesinpristinesystemswillbeessentialforeffortstoconserveandrestorebiodiversityForexampleifthespatialdis-tributionoffishesintheBitaRiverderiveslargelyfromdispersalandenvironmental filtering then strategies to conserve fish diversitymustemphasisemaintenanceofhabitatheterogeneityandconnec-tivityatappropriatespatialandtemporalscales
ACKNOWLEDG MENTS
WethankWorldWildlifeFoundation(WWF)ColombiaFundacioacutenOmachaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtandUniversidaddelTolimaforlogisticsandfinancingpartof this studyWealsowould like to thankDTaphornCDoNascimentoJGAlbornozandDMontoyafortheirassistanceinthefieldandlaboratorywork
ORCID
Edwin O Loacutepez-Delgado httpsorcidorg0000-0002-4010-1880
R E FE R E N C E S
AlmeidaRSampCetraM(2016)Longitudinalgradienteffectsonthestream fishmetacommunityNatureza amp Conservaccedilatildeo14 112ndash119httpsdoiorg101016jncon201610001
ArringtonDAWinemillerKOampLaymanCA(2005)CommunityassemblyatthepatchscaleinaspeciesrichtropicalriverOecologia144157ndash167httpsdoiorg101007s00442-005-0014-7
BlanchetFGLegendrePampBorcardD (2008a)Forwardselection of explanatory variables Ecology 89 2623ndash2632 httpsdoiorg 10189007-09861
BlanchetFGLegendrePampBorcardD(2008b)Modellingdirectionalspatialprocesses inecologicaldataEcological Modelling215325ndash336httpsdoiorg101016jecolmodel200804001
BlanchetFGLegendrePMarangerRMontiDampPepinP(2011)Modelling the effect of directional spatial ecological processes atdifferent scalesOecologia166 357ndash368 httpsdoiorg101007s00442-010-1867-y
BorcardDGillet Famp Legendre P (2011)Numerical ecology with R NewYorkSpringerhttpsdoiorg101007978-1-4419-7976-6
Brown B L amp Swan C M (2010) Dendritic network structure constrains metacommunity properties in riverine ecosystems Journal of Animal Ecology 79 571ndash580 httpsdoiorg101111 j1365-2656201001668x
Carvajal-Quintero J D Escobar F Alvarado F Villa-Navarro F AJaramillo-VillaUacuteampMaldonado-OcampoJA (2015)Variation infreshwater fish assemblages along a regional elevation gradient inthenorthernAndesColombiaEcology and Evolution52608ndash2620httpsdoiorg101002ece31539
Carvalho R A amp Tejerina-Garro F L (2015) The influence of en-vironmental variables on the functional structure of headwa-ter stream fish assemblages A study of two tropical basins in
378emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
Central Brazil Neotropical Ichthyology 13 349ndash360 httpsdoiorg1015901982-0224-20130148
Castillo-Escrivagrave A Rueda J Zamora L Hernaacutendez R Del MoralM ampMesquita-Joanes F (2016) The role of watercourse versusoverland dispersal and niche effects on ostracod distribution inMediterraneanstreams(easternIberianPeninsula)Acta Oecologica731ndash9httpsdoiorg101016jactao201602001
ChaseJMKraftNJSmithKGVellendMampInouyeBD(2011)Usingnullmodelstodisentanglevariationincommunitydissimilarityfromvariationinα-diversityEcosphere21ndash11
Clements F E (1916)Plant succession An analysis of the development of vegetationWashingtonDCCarnegieInstitutionofWashingtonhttpsdoiorg105962bhltitle56234
Cottenie K (2005) Integrating environmental and spatial processesin ecological community dynamics Ecology Letters 8 1175ndash1182httpsdoiorg101111j1461-0248200500820x
Dallas T (2014) metacom An R package for the analysis of meta-community structure Ecography 37 402ndash405 httpsdoiorg101111j1600-0587201300695x
DallasTampDrakeJM(2014)RelativeimportanceofenvironmentalgeographicandspatialvariablesonzooplanktonmetacommunitiesEcosphere51ndash13
DatryTMeloASMoyaNZubietaJDeLaBarraEampOberdorffT(2016)MetacommunitypatternsacrossthreeNeotropicalcatch-mentswithvaryingenvironmentalharshnessFreshwater Biology61277ndash292httpsdoiorg101111fwb12702
DevercelliMScarabottiPMayoraGSchneiderBampGiriF(2016)Unravelling the role of determinism and stochasticity in struc-turing the phytoplanktonic metacommunity of the Paranaacute Riverfloodplain Hydrobiologia 764 139ndash156 httpsdoiorg101007s10750-015-2363-5
Diamond JM (1975)Assemblyof species communities InMartinLCodyandJaredMDiamondeditorsEcology and evolution of com-munities(pp342ndash444)CambridgeMassBelknapPressofHarvardUniversityPress
DraySBlanchetGBorcardDGuenardGJombartTLarocqueGhellipWagnerHH(2017)adespatialMultivariatemultiscalespatialanalysisRpackageversion009
DufreneMampLegendreP (1997)Speciesassemblagesand indicatorspecies The need for a flexible asymmetrical approachEcological Monographs67345ndash366
Erős T (2017) Scaling fish metacommunities in stream networksSynthesisandfutureresearchavenuesCommunity Ecology1872ndash86httpsdoiorg10155616820171819
Erős T Takaacutecs P Specziaacuter A SchmeraD amp Saacutely P (2017) Effectof landscapecontextonfishmetacommunitystructuringinstreamnetworksFreshwater Biology62215ndash228httpsdoiorg101111fwb12857
FalkeJAampFauschKD(2010)Frommetapopulationstometacom-munities linking theorywith empirical observations of the spatialpopulationdynamicsofstreamfishesInAmericanFisheriesSocietySymposium(Vol73pp207ndash233)
FernandesIMHenriques-SilvaRPenhaJZuanonJampPeres-NetoPR(2014)Spatiotemporaldynamicsinaseasonalmetacommunitystructure is predictable The case of floodplain-fish communitiesEcography37464ndash475
Gleason H A (1926) The individualistic concept of the plant asso-ciation Bulletin of the Torrey Botanical Club 53 7ndash26 httpsdoiorg1023072479933
Heino JMeloASampBiniLM (2015)Reconceptualising thebetadiversity-environmental heterogeneity relationship in runningwater systems Freshwater Biology 60(2) 223ndash235 httpsdoiorg101111fwb12502
HeinoJMeloASSiqueiraTSoininenJValankoSampBiniLM(2015) Metacommunity organisation spatial extent and dispersal
in aquatic systems Patterns processes and prospects Freshwater Biology60845ndash869httpsdoiorg101111fwb12533
Landeiro V L Magnusson W E Melo A S Espiacuterito-Santo H MV amp Bini L M (2011) Spatial eigenfunction analyses in streamnetworks Do watercourse and overland distances produce dif-ferent results Freshwater Biology 56 1184ndash1192 httpsdoiorg101111j1365-2427201002563x
LegendrePLegendreLampLegendreP(2012)Numerical ecology 3rd EnglishedPierreLegendreandLouisLegendreAmsterdamBostonElsevier
LeiboldMAHolyoakMMouquetNAmarasekarePChaseJMHoopesMFhellipGonzalezA(2004)ThemetacommunityconceptAframeworkformulti-scalecommunityecologyEcology Letters7601ndash613httpsdoiorg101111j1461-0248200400608x
LeiboldMAampMikkelsonGM(2002)Coherencespeciesturnoverand boundary clumping Elements of meta-community structureOikos 97 237ndash250 httpsdoiorg101034j1600-07062002 970210x
Logue J B Mouquet N Peter H Hillebrand H amp TheMetacommunityWorkingGroup (2011)Empirical approaches tometacommunities A review and comparisonwith theoryTrends in Ecology amp Evolution 26 482ndash491 httpsdoiorg101016jtree201104009
Loacutepez-GonzaacutelezCPresleySJLozanoAStevensRDampHigginsCL(2012)MetacommunityanalysisofMexicanbatsEnvironmentallymediatedstructure inanareaofhighgeographicandenvironmen-tal complexity Journal of Biogeography 39 177ndash192 httpsdoiorg101111j1365-2699201102590x
MacarthurRampLevinsR (1967)The limitingsimilarityconvergenceanddivergenceofcoexistingspeciesThe American Naturalist101377ndash385httpsdoiorg101086282505
Meynard C N Lavergne S Boulangeat I Garraud L Van Es JMouquetNampThuillerW(2013)Disentanglingthedriversofmeta-community structure across spatial scales Journal of Biogeography401560ndash1571httpsdoiorg101111jbi12116
MontantildeaCGWinemillerKOampSuttonA(2014)IntercontinentalcomparisonoffishecomorphologyNullmodeltestsofcommunityassembly at thepatch scale in riversEcological Monographs84(1)91ndash107httpsdoiorg10189013-07081
MonteiroVFPaivaPCampPeres-NetoPR (2017)Aquantitativeframework to estimate the relative importance of environmentspatial variation and patch connectivity in driving communitycomposition Journal of Animal Ecology 86 316ndash326 httpsdoiorg1011111365-265612619
Mouillot D Dumay O amp Tomasini J A (2007) Limiting similaritynichefilteringandfunctionaldiversityincoastallagoonfishcommu-nitiesEstuarine Coastal and Shelf Science71443ndash456httpsdoiorg101016jecss200608022
Patterson B D amp Atmar W (1986) Nested subsets and thestructure of insular mammalian faunas and archipelagosBiological Journal of the Linnean Society 28 65ndash82 httpsdoiorg101111j1095-83121986tb01749x
Pease A A Gonzaacutelez-Diacuteaz A A Rodiles-Hernaacutendez R ampWinemiller K O (2012) Functional diversity and traitndashenviron-ment relationships of stream fish assemblages in a large tropi-cal catchment Freshwater Biology 57 1060ndash1075 httpsdoiorg101111j1365-2427201202768x
Peres-Neto P R amp Legendre P (2010) Estimating and con-trolling for spatial structure in the study of ecological commu-nities Global Ecology and Biogeography 19 174ndash184 httpsdoiorg101111j1466-8238200900506x
Peres-NetoPRLegendrePDraySampBorcardD(2006)VariationpartitioningofspeciesdatamatricesEstimationandcomparisonoffractionsEcology872614ndash2625httpsdoiorg1018900012-9658(2006)87[2614vposdm]20co2
emspensp emsp | emsp379LOacutePEZ- DELGADO Et AL
Presley S J Higgins C L ampWillig M R (2010) A comprehensiveframework for the evaluation ofmetacommunity structureOikos119908ndash917httpsdoiorg101111j1600-0706201018544x
Presley S J amp Willig M R (2010) Bat metacommunity structure on Caribbean islands and the role of endemics Global Ecology and Biogeography19185ndash199httpsdoiorg101111j1466-82382009 00505x
RCoreTeam (2017)R A language and environment for statistical com-puting Vienna Austria R Foundation for Statistical ComputingRetrievedfromhttpwwwR-projectorg
RobertsDW (2007) labdsvOrdinationandmultivariateanalysis forecologyR package version1(1)
SharmaSLegendrePDeCaacuteceresMampBoisclairD(2011)Theroleofenvironmentalandspatialprocessesinstructuringnativeandnon-native fish communities across thousands of lakes Ecography 34762ndash771httpsdoiorg101111j1600-0587201006811x
SimberloffD(1983)Competitiontheoryhypothesis-testingandothercommunityecologicalbuzzwordsThe American Naturalist122626ndash635httpsdoiorg101086284163
Soininen J (2014) A quantitative analysis of species sorting acrossorganisms and ecosystems Ecology 95 3284ndash3292 httpsdoiorg10189013-22281
SoininenJ(2016)SpatialstructureinecologicalcommunitiesmdashAquan-titative analysis Oikos 125 160ndash166 httpsdoiorg101111oik02241
TerBraakCampŠmilauerP (2012)Canoco reference manual and userrsquos guide Software for ordination (version 50)IthacaNYMicrocomputerPower
Tilman D (1982) Resource competition and community structure PrincetonNJPrincetonUniversityPress
Tonkin J D Stoll S Jaumlhnig S C amp Haase P (2016) Elements ofmetacommunity structure of river and riparian assemblagesCommunities taxonomic groups and deconstructed trait groupsEcological Complexity 25 35ndash43 httpsdoiorg101016jecocom201512002
TorresKMMampHigginsCL (2016)Taxonomicandfunctionalor-ganizationinmetacommunitystructureofstream-fishassemblagesamongandwithinriverbasinsinTexasAquatic Ecology50247ndash259httpsdoiorg101007s10452-016-9572-5
TrujilloFampLassoCA(2017)IVBiodiversidaddelriacuteoBitaVichadaColombia Serie Editorial Fauna Silvestre Neotropical (p 349)BogotaColombiaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtFundacioacutenOmacha
Vitorino-JuacuteniorOBFernandesRAgostinhoCSampPeliciceFM(2016) Riverine networks constrain β-diversity patterns amongfishassemblagesinalargeNeotropicalriverFreshwater Biology611733ndash1745httpsdoiorg101111fwb12813
Willig M R Presley S J Bloch C P Castro-Arellano I CisnerosL M Higgins C L amp Klingbeil B T (2011) Tropical metacom-munities along elevational gradients Effects of forest type andother environmental factors Oikos 120 1497ndash1508 httpsdoiorg101111j1600-0706201119218x
WillisSWinemillerKampLopez-FernandezH (2005)Habitatstruc-turalcomplexityandmorphologicaldiversityoffishassemblagesinaNeotropicalfloodplainriverOecologia142284ndash295httpsdoiorg101007s00442-004-1723-z
WinemillerKOFleckerASampHoeinghausD J (2010)Patchdy-namicsandenvironmentalheterogeneityinloticecosystemsJournal of the North American Benthological Society29 84ndash99 httpsdoiorg10189908-0481
SUPPORTING INFORMATION
Additional supporting information may be found online in theSupportingInformationsectionattheendofthearticle
How to cite this articleLoacutepez-DelgadoEOWinemillerKOVilla-NavarroFADometacommunitytheoriesexplainspatialvariationinfishassemblagestructureinapristinetropicalriverFreshw Biol 201964367ndash379 httpsdoiorg101111fwb13229
374emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
lowsectionrevealedanesteddistributionNosignificantcorrela-tionsbetweenassemblagestructureandenvironmentalorspatialfactorswerefoundforthehighandlowsections(Tables2and3Figure3)
Midndashhigh and midndashlow sections displayed Clementsian pat-terns of assemblage structure for both the first and second RAaxes For the midndashhigh section no significant correlations wereobtained between RA1 and environmental or spatial variableshoweverRA2waspositivelycorrelatedwiththepresenceofroadsandthespatialpredictorAEM1(Tables2and3Figure3)ForthemidndashlowsectionRA1waspositivelycorrelatedwithsubstrateandinstreamcoverandRA2withthespatialpredictorAEM1(Tables2and3Figure3)
32emsp|emspVariation partitioning analysis
Atthebasinscaleallthecomponentsfromvariationpartitioning(ESE+SE|SS|E)explainedsignificant(plt05)variationinfishassem-blagestructuresupportingtheideathatmetacommunitydynamicsinfluencepatternsat that scale (Table4)Around19of the totalexplainedvariation (E+S)wasmodelledbythecombined influenceofenvironmentandspatialpredictors69byapureenvironmentalcomponent(E|S)and46byapurespatialcomponent(S|E)Eighty-onepercentofthevariationwasunexplainedEnvironmentalvaria-tionatthebasinscalewassignificantlyinfluencedbypercentageof
mudsubstratesmallwoodydebrisandwaterconductivity(Table4)Onlyfourof33spatialpredictorsweresignificant(AEM1AEM16AEM18AEM21Table4)
Attheregionalscalethenumberofsiteswithinthehighandlow sections was too small for statistical analysis and only themidndashhigh and midndashlow sections were analysed Only the envi-ronmental component (E) explained significant variation in fishassemblagestructurewithineachofthesesections(Table4)indi-catingthatitwasnotpossibletoinferanymetacommunitymodelIn themidndashhigh section a significant environmental componentinfluenced most strongly by percentage of mud substrate andsmallwoodydebrisexplained16ofassemblagevariationInthemidndashlow section 14of assemblage variationwas explainedbyan environmental componentwith conductivity andpercentageofsmallwoodydebrismostinfluential
33emsp|emspDrivers of fish community structure
The set of variables selected by variation partitioning includedmostof theones thathadhighestSpearman rankcorrelationsAtthe basin level environmental variables related to substrate andinstream coverwere identified by bothmethods (Tables3 and 4)EnvironmentalpredictorssuchaspercentagesofmudsubstrateandsmallwoodydebrisandthespatialpredictorAEM1weresignificantatbothbasinandregionalscales(Tables3and4)
TABLE 3emspSpearman-rankcorrelationsbetweenpredictorsandscoresobtainedfromthefirsttwoaxesfromthereciprocalaveragingordinationofthesites-by-speciesincidencematrixintheelementsofmetacommunitystructureframework
Variables
Basin Midndashhigh Midndashlow
r p r p r p
Primaryaxis
()Mud minus055 lt001 061 002
()Largewoodydebris minus048 lt001
()Smallwoodydebris minus048 lt001 055 004
()Submergedroots minus048 lt001 061 002
()Streamshadedbytreecanopy minus047 lt001 061 002
Width 037 003
Streamorder 052 lt001
AEM21 039 002
AEM25 039 002
Secondaryaxis
()Mud minus071 001
()Largewoodydebris minus066 002
()Smallwoodydebris minus075 lt001
()Streamshadedbytreecanopy minus075 lt001
Flow minus047 lt01
Neartoroads 066 002
AEM1 051 lt01 06 004 069 001
Onlystatisticallysignificantvalues(plt005)areshownNosignificantcorrelationswerefoundforhighandlowsectionsAEMasymmetriceigenvectormaps
emspensp emsp | emsp375LOacutePEZ- DELGADO Et AL
F IGURE 3 emspSpeciesdistributionswithinfourriversectionsorderedaccordingtoscoresonthefirstreciprocalaxis
High
E5
E2
E4
E3
E1
Species
Midminushigh
E16
E8
E7
E9
E14
E17
E10
E15
E12
E11
E13
E6
Species
Midminuslow
E30E20E24E18E26E27E31E25E21E23E22E29E28E19
Species
Low
E33
E34
E32
Species
Absence
Presence
Component
Bita basin Midndashhigh Midndashlow
AdjR2 p AdjR2 p AdjR2 p
E 014 0001 016 0007 014 0002
S 012 0001 000 05 000 056
E+S 019 0001 018 02 014 013
E|S 0069 0001 020 03 016 016
S|E 0046 0025 002 06 000 051
b 0075
R 081 082 086
Variablesselected Mud[E] Smallwoodydebris[E] Conductivity[E] AEM1[S] AEM16[S] AEM18[S] AEM21[S]
Mud[E] Smallwoodydebris[E]
Conductivity[E] Smallwoodydebris[E]
AEMasymmetriceigenvectormapsAdjR2adjustedR2forthepercentageofvariationEenviron-mentalvariationSspatialvariationE+STotalexplainedvariationE|SPureenvironmentalvaria-tion S|E Pure spatial variation b Variation shared by environmental and spatial factorsRUnexplainedvariation(residual)Significantvalues(plt005)areshowninbold
TABLE 4emspVariationpartitioninganalysisforfishassemblagesandselectedgroupsofenvironmentalandspatialvariablesatbasinandregionalscales
376emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
4emsp |emspDISCUSSION
In this study we applied complementary statistical analyses toinvestigate fish species distributions and variation in assemblagestructureacrossalongitudinalfluvialgradienttorevealtherelativeinfluenceoffactorsassociatedwithenvironmentalconditions(eghabitat features environmental filtering) and spatial relationshipsinfluencingdispersalResultsfromtheseanalysesprovidedabasistoinfertherelativeinfluenceofbiotic interactionsandstochasticprocessesincommunityassemblyattwospatialscalesOurresultssuggest that the fishmetacommunity in theBitaRiver exhibits aClementsiandistributionimplyingthatspeciesrespondtotheen-vironmental and fluvial gradient as groups with fairly consistentcompositions (Clements1916)Thispatternalso impliesapoten-tialeffectofenvironmentalfilteringatthescaleoftheentirebasinSimilarlythevariationpartitioninganalysisshowedthatthevaria-tion explainedby the pure environmental componentwas higherthanthepurespatialcomponentwhichalsoisconsistentwithspe-ciessortingSpeciessortingoccurswhenorganismsselecthabitatsthat convey relativelyhigh fitness andor avoidor areotherwiseeliminatedfromhabitatsthatreducetheirfitness(Soininen2014)Thesefindingssupportourpredictionthatatthebasinscaledis-persalratesarelowandassemblagestructureisstronglyinfluencedbyspeciessorting
Ourregional-scaleresultsalsorevealedaClementsiandistribu-tionoflocalassemblagecompositionThispatterncouldhavebeencausedbyspeciesresponsestospatialvariationofabioticandbioticenvironmentalfactorsSpearmancorrelationbetweenenvironmen-talvariablesandsitescoresongradientsofassemblagevariationin-dicatedthatstreamorderandchannelsizehadstrongassociationswithlocalassemblagestructureVariablesassociatedwithsubstratecomposition and instream cover also had significant associationsFishes in theBitaRiver apparently respond to theseenvironmen-talvariablesasrelativelyclumpedgroupsClementsianassemblagestructure has been found in plants (Meynard etal 2013 Willigetal2011)mammals(Loacutepez-GonzaacutelezPresleyLozanoStevensampHiggins 2012PresleyampWillig 2010) andvarious freshwateror-ganismsincludingplanktonmacroinvertebratesandfish(DallasampDrake2014Erősetal2017FernandesHenriques-SilvaPenhaZuanonampPeres-Neto2014TonkinStollJaumlhnigampHaase2016TorresampHiggins2016)
Weproposed that somemetacommunity processes and resul-tantpatternswouldnotbethesameattwodifferentspatialscalesofanalysisWefoundpositivecoherenceandturnoverinupstreamregionsandpositivecoherenceandnegativeturnoverwithnesteddistributionsindownstreamregionsThesepatternswerenotpre-dicteda prioriAttheregionalscaleaClementsiandistributionwasfoundonlyinthemidndashhighandmidndashlowsectionsofthebasinsug-gesting that species responded as groups to environmental filtersmore strongly in these middle sections of longitudinal gradientAssemblage coherence was non-significant (ie not statisticallydifferent from a random distribution) for the high and low sec-tionsoftheriverAccordingtoPresleyetal(2010)non-significant
coherence is not always an indicatorof randomstructuresDallasandDrake(2014)foundthatinmoststudiesinwhichrandompat-ternswerefoundsamplescontainedfewspeciesfewsitesorbothand therefore therewas not enough statistical power to test co-herenceusing randomisationprocedures Inourstudy therewerefewersurveysitesforthehighestandlowestsectionsoftheriverwhichmayaccountfornon-significantcoherenceinthosesectionsNonethelessFigure3revealsapatternofspeciesdistributionwithhigh turnover and boundary clumping in the high section such apatternislessdiscernibleforthelowsection
Inthelowsectionoftheriverdistributionpatternswerediffer-ent for the twoassemblageordinationaxesRandomdistributionswere inferredbasedon the firstordinationaxisandnesteddistri-butionswerefoundforthesecondaxisResultsofthesecondaxissupport our hypothesis that environmental gradients over smallerspatial scales in the low sectionmay promote nested distributionpatternsSitesinthissectionwerecharacterisedbysubstratescom-prised almost entirely of sandwith patches of leaf litter and lowvariation inwater physicochemistryDistribution patternsmay bemorelikelytobenestedwhensamplesizeissmallandenvironmen-talgradientsareshort(Tonkinetal2016)ConverselylargesamplesizesandlongenvironmentalgradientsmayincreasethelikelihoodoffindingClementsianandGleasonianpatterns
At the basin scale the total variation in assemblage structurecapturedbythemodel(19)wasdecomposedinto69purelyen-vironmental 75 shared by environmental and spatial and 46purelyspatialcomponents(eachfractionwithplt0001)Thepureenvironmental component was strongly associated with the per-centage of mud substrate small woody debris and conductivitySharedenvironmentalandspatialfactorsalsowereassociatedwiththepercentageofmudandconductivityThepure spatial compo-nentwas represented by eigenvectors fromAEM predictors thatare not easily interpretable because they integrate multiple spa-tial scales (Peres-Netoamp Legendre 2010)with small-scale spatialvariables tending tobeassociatedwithmasseffectdynamics andlarge-scalespatialvariablestendingtobeassociatedwithdispersallimitation (HeinoMeloampBini2015HeinoMeloSiqueiraetal2015) At the scale of the entire basin both processes probablyoccursimultaneously
Thepercentageofvariationexplainedbyourpartitioninganal-ysiswas low(19)acommonfinding incommunityecologystud-ies (Castillo-Escrivagrave etal 2016 Devercelli Scarabotti MayoraSchneider amp Giri 2016 Erős etal 2017 Legendre amp Legendre2012TerBraakampŠmilauer2012)Thelargeamountofunexplainedvariationcouldbeduetoseveralfactorssuchasfailuretoincludeother relevant environmental variables and spatial predictors orvariablesrelatedtootherprocessessuchasbiotic interactionsOfcoursetherealsocouldbealargeinfluenceofstochasticdynamicsSoininen(2016)reviewed322datasetsandfoundthatspatialpredic-torsobtainedfromspatialeigenvectoranalysisgenerallyexplainedasmall fractionof totalassemblagevariationwhichsuggests thatspatialpredictors fromAEMmayperformpoorly incapturingpat-ternsreflectingdispersaldynamicsMonteiroetal(2017)proposed
emspensp emsp | emsp377LOacutePEZ- DELGADO Et AL
theuseofpatchconnectivitymetricsaspredictorsofdispersaldy-namicsratherthanspatialeigenvectorsTheyfoundthatthepatchconnectivityframeworkincreasedtheamountofexplainedvariationbyasmuchas50
Becausebothpureenvironmentalandpurespatialcomponentswere statistically significant both species sortingandmasseffectdynamics could have influenced fish assemblage structure at thebasin scale (Cottenie 2005) However because the proportionexplained by the pure environmental fractionwas larger than thespatialfraction(69versus46)speciessortingwasprobablythemoreinfluentialcomponentstructuringfishassemblagesinthissys-temTheseresultsareinaccordancewithHeinoMeloampBini(2015)whofoundthatanintermediateamountofdispersalwasneededforthespeciessortingprocesssincespeciesneedtodispersefromoneplace toanother searching forsiteswith theappropriateenviron-mentalconditionstothrive
Soininen(2014)reviewed326investigationsthatusedvariationpartitioning analysis finding that environmental variables usuallyexplainedthemostvariationinassemblagecompositionandspeciessortingwasmostofteninferredSpeciessortingmaybethepreva-lentmetacommunitymodel for river and stream fish assemblages(Cottenie2005FalkeampFausch2010HeinoMeloampBini2015HeinoMeloSiqueiraetal2015)
At a smaller spatial scale we predicted that species sortingstrongly influencesassemblages inheadwaterswherehabitatsarerelativelyisolatedwithintherivernetworkwhereasassemblagesindownstreamreacheswouldhavegreaterdispersalandbemorein-fluencedbymasseffectdynamicsThesepredictionswerenotcon-firmedBasedonvariationpartitioninganalysisandthedecisiontreeofCottenie(2005)noevidencewasobtainedtosupportanyofthemetacommunity paradigmsproposedby Leibold etal (2004) Thevariation partitioning procedure could only be performed for themidndashhighandmidndashlowsectionsthathadsufficientlylargesamplesOnlytheenvironmentalfractionwassignificantandthisresultcanbepronetotypeIerror
Insummaryvariationpartitioningandmetacommunitystructureanalysesprovidedcomplementaryfindingstoinferprocessesstruc-turingfishassemblagesintheBitaRiverBothapproachesidentifiedenvironmentalfilteringandspeciessortingastheprincipalstructur-ingprocessesinthissystemVariationpartitioninganalysisimpliedthatdispersalplaysasignificantroleatthebasinscalehowevertheenvironmentalfractionexplainedmorevariationBothanalysesre-vealedassemblagepatternscorrelatedwithcomponentsofhabitatstructureSimilarconclusionshavebeenreportedfromstudiescon-ducted at smaller spatial scales inother tropical rivers (ArringtonWinemillerampLayman2005WillisWinemillerampLopez-Fernandez2005)with some also inferring that biotic interactionsplay a sig-nificant role in structuring fish assemblages within local habitats(MontantildeaWinemillerampSutton2014) Inastudyof theCinarucoRiveranOrinocotributaryintheVenezuelanLlanoswithcharacter-isticssimilartotheBitaRiverWillisetal(2005)foundthathabitatstructural complexity was strongly correlated with the functionaldiversity of fish assemblages These findings combinedwith ours
suggest that fish community structure of Neotropical rivers andstreams is influencedby localenvironmentalconditionsespeciallyaspectsassociatedwithsubstrateandhabitatstructuralcomplexitythat in turnaffect species sorting that results inClementsianpat-ternsofspeciesdistribution Improvedunderstandingof the influ-enceofdispersalenvironmentalfilteringandbioticinteractionsonspeciesassemblagesinpristinesystemswillbeessentialforeffortstoconserveandrestorebiodiversityForexampleifthespatialdis-tributionoffishesintheBitaRiverderiveslargelyfromdispersalandenvironmental filtering then strategies to conserve fish diversitymustemphasisemaintenanceofhabitatheterogeneityandconnec-tivityatappropriatespatialandtemporalscales
ACKNOWLEDG MENTS
WethankWorldWildlifeFoundation(WWF)ColombiaFundacioacutenOmachaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtandUniversidaddelTolimaforlogisticsandfinancingpartof this studyWealsowould like to thankDTaphornCDoNascimentoJGAlbornozandDMontoyafortheirassistanceinthefieldandlaboratorywork
ORCID
Edwin O Loacutepez-Delgado httpsorcidorg0000-0002-4010-1880
R E FE R E N C E S
AlmeidaRSampCetraM(2016)Longitudinalgradienteffectsonthestream fishmetacommunityNatureza amp Conservaccedilatildeo14 112ndash119httpsdoiorg101016jncon201610001
ArringtonDAWinemillerKOampLaymanCA(2005)CommunityassemblyatthepatchscaleinaspeciesrichtropicalriverOecologia144157ndash167httpsdoiorg101007s00442-005-0014-7
BlanchetFGLegendrePampBorcardD (2008a)Forwardselection of explanatory variables Ecology 89 2623ndash2632 httpsdoiorg 10189007-09861
BlanchetFGLegendrePampBorcardD(2008b)Modellingdirectionalspatialprocesses inecologicaldataEcological Modelling215325ndash336httpsdoiorg101016jecolmodel200804001
BlanchetFGLegendrePMarangerRMontiDampPepinP(2011)Modelling the effect of directional spatial ecological processes atdifferent scalesOecologia166 357ndash368 httpsdoiorg101007s00442-010-1867-y
BorcardDGillet Famp Legendre P (2011)Numerical ecology with R NewYorkSpringerhttpsdoiorg101007978-1-4419-7976-6
Brown B L amp Swan C M (2010) Dendritic network structure constrains metacommunity properties in riverine ecosystems Journal of Animal Ecology 79 571ndash580 httpsdoiorg101111 j1365-2656201001668x
Carvajal-Quintero J D Escobar F Alvarado F Villa-Navarro F AJaramillo-VillaUacuteampMaldonado-OcampoJA (2015)Variation infreshwater fish assemblages along a regional elevation gradient inthenorthernAndesColombiaEcology and Evolution52608ndash2620httpsdoiorg101002ece31539
Carvalho R A amp Tejerina-Garro F L (2015) The influence of en-vironmental variables on the functional structure of headwa-ter stream fish assemblages A study of two tropical basins in
378emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
Central Brazil Neotropical Ichthyology 13 349ndash360 httpsdoiorg1015901982-0224-20130148
Castillo-Escrivagrave A Rueda J Zamora L Hernaacutendez R Del MoralM ampMesquita-Joanes F (2016) The role of watercourse versusoverland dispersal and niche effects on ostracod distribution inMediterraneanstreams(easternIberianPeninsula)Acta Oecologica731ndash9httpsdoiorg101016jactao201602001
ChaseJMKraftNJSmithKGVellendMampInouyeBD(2011)Usingnullmodelstodisentanglevariationincommunitydissimilarityfromvariationinα-diversityEcosphere21ndash11
Clements F E (1916)Plant succession An analysis of the development of vegetationWashingtonDCCarnegieInstitutionofWashingtonhttpsdoiorg105962bhltitle56234
Cottenie K (2005) Integrating environmental and spatial processesin ecological community dynamics Ecology Letters 8 1175ndash1182httpsdoiorg101111j1461-0248200500820x
Dallas T (2014) metacom An R package for the analysis of meta-community structure Ecography 37 402ndash405 httpsdoiorg101111j1600-0587201300695x
DallasTampDrakeJM(2014)RelativeimportanceofenvironmentalgeographicandspatialvariablesonzooplanktonmetacommunitiesEcosphere51ndash13
DatryTMeloASMoyaNZubietaJDeLaBarraEampOberdorffT(2016)MetacommunitypatternsacrossthreeNeotropicalcatch-mentswithvaryingenvironmentalharshnessFreshwater Biology61277ndash292httpsdoiorg101111fwb12702
DevercelliMScarabottiPMayoraGSchneiderBampGiriF(2016)Unravelling the role of determinism and stochasticity in struc-turing the phytoplanktonic metacommunity of the Paranaacute Riverfloodplain Hydrobiologia 764 139ndash156 httpsdoiorg101007s10750-015-2363-5
Diamond JM (1975)Assemblyof species communities InMartinLCodyandJaredMDiamondeditorsEcology and evolution of com-munities(pp342ndash444)CambridgeMassBelknapPressofHarvardUniversityPress
DraySBlanchetGBorcardDGuenardGJombartTLarocqueGhellipWagnerHH(2017)adespatialMultivariatemultiscalespatialanalysisRpackageversion009
DufreneMampLegendreP (1997)Speciesassemblagesand indicatorspecies The need for a flexible asymmetrical approachEcological Monographs67345ndash366
Erős T (2017) Scaling fish metacommunities in stream networksSynthesisandfutureresearchavenuesCommunity Ecology1872ndash86httpsdoiorg10155616820171819
Erős T Takaacutecs P Specziaacuter A SchmeraD amp Saacutely P (2017) Effectof landscapecontextonfishmetacommunitystructuringinstreamnetworksFreshwater Biology62215ndash228httpsdoiorg101111fwb12857
FalkeJAampFauschKD(2010)Frommetapopulationstometacom-munities linking theorywith empirical observations of the spatialpopulationdynamicsofstreamfishesInAmericanFisheriesSocietySymposium(Vol73pp207ndash233)
FernandesIMHenriques-SilvaRPenhaJZuanonJampPeres-NetoPR(2014)Spatiotemporaldynamicsinaseasonalmetacommunitystructure is predictable The case of floodplain-fish communitiesEcography37464ndash475
Gleason H A (1926) The individualistic concept of the plant asso-ciation Bulletin of the Torrey Botanical Club 53 7ndash26 httpsdoiorg1023072479933
Heino JMeloASampBiniLM (2015)Reconceptualising thebetadiversity-environmental heterogeneity relationship in runningwater systems Freshwater Biology 60(2) 223ndash235 httpsdoiorg101111fwb12502
HeinoJMeloASSiqueiraTSoininenJValankoSampBiniLM(2015) Metacommunity organisation spatial extent and dispersal
in aquatic systems Patterns processes and prospects Freshwater Biology60845ndash869httpsdoiorg101111fwb12533
Landeiro V L Magnusson W E Melo A S Espiacuterito-Santo H MV amp Bini L M (2011) Spatial eigenfunction analyses in streamnetworks Do watercourse and overland distances produce dif-ferent results Freshwater Biology 56 1184ndash1192 httpsdoiorg101111j1365-2427201002563x
LegendrePLegendreLampLegendreP(2012)Numerical ecology 3rd EnglishedPierreLegendreandLouisLegendreAmsterdamBostonElsevier
LeiboldMAHolyoakMMouquetNAmarasekarePChaseJMHoopesMFhellipGonzalezA(2004)ThemetacommunityconceptAframeworkformulti-scalecommunityecologyEcology Letters7601ndash613httpsdoiorg101111j1461-0248200400608x
LeiboldMAampMikkelsonGM(2002)Coherencespeciesturnoverand boundary clumping Elements of meta-community structureOikos 97 237ndash250 httpsdoiorg101034j1600-07062002 970210x
Logue J B Mouquet N Peter H Hillebrand H amp TheMetacommunityWorkingGroup (2011)Empirical approaches tometacommunities A review and comparisonwith theoryTrends in Ecology amp Evolution 26 482ndash491 httpsdoiorg101016jtree201104009
Loacutepez-GonzaacutelezCPresleySJLozanoAStevensRDampHigginsCL(2012)MetacommunityanalysisofMexicanbatsEnvironmentallymediatedstructure inanareaofhighgeographicandenvironmen-tal complexity Journal of Biogeography 39 177ndash192 httpsdoiorg101111j1365-2699201102590x
MacarthurRampLevinsR (1967)The limitingsimilarityconvergenceanddivergenceofcoexistingspeciesThe American Naturalist101377ndash385httpsdoiorg101086282505
Meynard C N Lavergne S Boulangeat I Garraud L Van Es JMouquetNampThuillerW(2013)Disentanglingthedriversofmeta-community structure across spatial scales Journal of Biogeography401560ndash1571httpsdoiorg101111jbi12116
MontantildeaCGWinemillerKOampSuttonA(2014)IntercontinentalcomparisonoffishecomorphologyNullmodeltestsofcommunityassembly at thepatch scale in riversEcological Monographs84(1)91ndash107httpsdoiorg10189013-07081
MonteiroVFPaivaPCampPeres-NetoPR (2017)Aquantitativeframework to estimate the relative importance of environmentspatial variation and patch connectivity in driving communitycomposition Journal of Animal Ecology 86 316ndash326 httpsdoiorg1011111365-265612619
Mouillot D Dumay O amp Tomasini J A (2007) Limiting similaritynichefilteringandfunctionaldiversityincoastallagoonfishcommu-nitiesEstuarine Coastal and Shelf Science71443ndash456httpsdoiorg101016jecss200608022
Patterson B D amp Atmar W (1986) Nested subsets and thestructure of insular mammalian faunas and archipelagosBiological Journal of the Linnean Society 28 65ndash82 httpsdoiorg101111j1095-83121986tb01749x
Pease A A Gonzaacutelez-Diacuteaz A A Rodiles-Hernaacutendez R ampWinemiller K O (2012) Functional diversity and traitndashenviron-ment relationships of stream fish assemblages in a large tropi-cal catchment Freshwater Biology 57 1060ndash1075 httpsdoiorg101111j1365-2427201202768x
Peres-Neto P R amp Legendre P (2010) Estimating and con-trolling for spatial structure in the study of ecological commu-nities Global Ecology and Biogeography 19 174ndash184 httpsdoiorg101111j1466-8238200900506x
Peres-NetoPRLegendrePDraySampBorcardD(2006)VariationpartitioningofspeciesdatamatricesEstimationandcomparisonoffractionsEcology872614ndash2625httpsdoiorg1018900012-9658(2006)87[2614vposdm]20co2
emspensp emsp | emsp379LOacutePEZ- DELGADO Et AL
Presley S J Higgins C L ampWillig M R (2010) A comprehensiveframework for the evaluation ofmetacommunity structureOikos119908ndash917httpsdoiorg101111j1600-0706201018544x
Presley S J amp Willig M R (2010) Bat metacommunity structure on Caribbean islands and the role of endemics Global Ecology and Biogeography19185ndash199httpsdoiorg101111j1466-82382009 00505x
RCoreTeam (2017)R A language and environment for statistical com-puting Vienna Austria R Foundation for Statistical ComputingRetrievedfromhttpwwwR-projectorg
RobertsDW (2007) labdsvOrdinationandmultivariateanalysis forecologyR package version1(1)
SharmaSLegendrePDeCaacuteceresMampBoisclairD(2011)Theroleofenvironmentalandspatialprocessesinstructuringnativeandnon-native fish communities across thousands of lakes Ecography 34762ndash771httpsdoiorg101111j1600-0587201006811x
SimberloffD(1983)Competitiontheoryhypothesis-testingandothercommunityecologicalbuzzwordsThe American Naturalist122626ndash635httpsdoiorg101086284163
Soininen J (2014) A quantitative analysis of species sorting acrossorganisms and ecosystems Ecology 95 3284ndash3292 httpsdoiorg10189013-22281
SoininenJ(2016)SpatialstructureinecologicalcommunitiesmdashAquan-titative analysis Oikos 125 160ndash166 httpsdoiorg101111oik02241
TerBraakCampŠmilauerP (2012)Canoco reference manual and userrsquos guide Software for ordination (version 50)IthacaNYMicrocomputerPower
Tilman D (1982) Resource competition and community structure PrincetonNJPrincetonUniversityPress
Tonkin J D Stoll S Jaumlhnig S C amp Haase P (2016) Elements ofmetacommunity structure of river and riparian assemblagesCommunities taxonomic groups and deconstructed trait groupsEcological Complexity 25 35ndash43 httpsdoiorg101016jecocom201512002
TorresKMMampHigginsCL (2016)Taxonomicandfunctionalor-ganizationinmetacommunitystructureofstream-fishassemblagesamongandwithinriverbasinsinTexasAquatic Ecology50247ndash259httpsdoiorg101007s10452-016-9572-5
TrujilloFampLassoCA(2017)IVBiodiversidaddelriacuteoBitaVichadaColombia Serie Editorial Fauna Silvestre Neotropical (p 349)BogotaColombiaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtFundacioacutenOmacha
Vitorino-JuacuteniorOBFernandesRAgostinhoCSampPeliciceFM(2016) Riverine networks constrain β-diversity patterns amongfishassemblagesinalargeNeotropicalriverFreshwater Biology611733ndash1745httpsdoiorg101111fwb12813
Willig M R Presley S J Bloch C P Castro-Arellano I CisnerosL M Higgins C L amp Klingbeil B T (2011) Tropical metacom-munities along elevational gradients Effects of forest type andother environmental factors Oikos 120 1497ndash1508 httpsdoiorg101111j1600-0706201119218x
WillisSWinemillerKampLopez-FernandezH (2005)Habitatstruc-turalcomplexityandmorphologicaldiversityoffishassemblagesinaNeotropicalfloodplainriverOecologia142284ndash295httpsdoiorg101007s00442-004-1723-z
WinemillerKOFleckerASampHoeinghausD J (2010)Patchdy-namicsandenvironmentalheterogeneityinloticecosystemsJournal of the North American Benthological Society29 84ndash99 httpsdoiorg10189908-0481
SUPPORTING INFORMATION
Additional supporting information may be found online in theSupportingInformationsectionattheendofthearticle
How to cite this articleLoacutepez-DelgadoEOWinemillerKOVilla-NavarroFADometacommunitytheoriesexplainspatialvariationinfishassemblagestructureinapristinetropicalriverFreshw Biol 201964367ndash379 httpsdoiorg101111fwb13229
emspensp emsp | emsp375LOacutePEZ- DELGADO Et AL
F IGURE 3 emspSpeciesdistributionswithinfourriversectionsorderedaccordingtoscoresonthefirstreciprocalaxis
High
E5
E2
E4
E3
E1
Species
Midminushigh
E16
E8
E7
E9
E14
E17
E10
E15
E12
E11
E13
E6
Species
Midminuslow
E30E20E24E18E26E27E31E25E21E23E22E29E28E19
Species
Low
E33
E34
E32
Species
Absence
Presence
Component
Bita basin Midndashhigh Midndashlow
AdjR2 p AdjR2 p AdjR2 p
E 014 0001 016 0007 014 0002
S 012 0001 000 05 000 056
E+S 019 0001 018 02 014 013
E|S 0069 0001 020 03 016 016
S|E 0046 0025 002 06 000 051
b 0075
R 081 082 086
Variablesselected Mud[E] Smallwoodydebris[E] Conductivity[E] AEM1[S] AEM16[S] AEM18[S] AEM21[S]
Mud[E] Smallwoodydebris[E]
Conductivity[E] Smallwoodydebris[E]
AEMasymmetriceigenvectormapsAdjR2adjustedR2forthepercentageofvariationEenviron-mentalvariationSspatialvariationE+STotalexplainedvariationE|SPureenvironmentalvaria-tion S|E Pure spatial variation b Variation shared by environmental and spatial factorsRUnexplainedvariation(residual)Significantvalues(plt005)areshowninbold
TABLE 4emspVariationpartitioninganalysisforfishassemblagesandselectedgroupsofenvironmentalandspatialvariablesatbasinandregionalscales
376emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
4emsp |emspDISCUSSION
In this study we applied complementary statistical analyses toinvestigate fish species distributions and variation in assemblagestructureacrossalongitudinalfluvialgradienttorevealtherelativeinfluenceoffactorsassociatedwithenvironmentalconditions(eghabitat features environmental filtering) and spatial relationshipsinfluencingdispersalResultsfromtheseanalysesprovidedabasistoinfertherelativeinfluenceofbiotic interactionsandstochasticprocessesincommunityassemblyattwospatialscalesOurresultssuggest that the fishmetacommunity in theBitaRiver exhibits aClementsiandistributionimplyingthatspeciesrespondtotheen-vironmental and fluvial gradient as groups with fairly consistentcompositions (Clements1916)Thispatternalso impliesapoten-tialeffectofenvironmentalfilteringatthescaleoftheentirebasinSimilarlythevariationpartitioninganalysisshowedthatthevaria-tion explainedby the pure environmental componentwas higherthanthepurespatialcomponentwhichalsoisconsistentwithspe-ciessortingSpeciessortingoccurswhenorganismsselecthabitatsthat convey relativelyhigh fitness andor avoidor areotherwiseeliminatedfromhabitatsthatreducetheirfitness(Soininen2014)Thesefindingssupportourpredictionthatatthebasinscaledis-persalratesarelowandassemblagestructureisstronglyinfluencedbyspeciessorting
Ourregional-scaleresultsalsorevealedaClementsiandistribu-tionoflocalassemblagecompositionThispatterncouldhavebeencausedbyspeciesresponsestospatialvariationofabioticandbioticenvironmentalfactorsSpearmancorrelationbetweenenvironmen-talvariablesandsitescoresongradientsofassemblagevariationin-dicatedthatstreamorderandchannelsizehadstrongassociationswithlocalassemblagestructureVariablesassociatedwithsubstratecomposition and instream cover also had significant associationsFishes in theBitaRiver apparently respond to theseenvironmen-talvariablesasrelativelyclumpedgroupsClementsianassemblagestructure has been found in plants (Meynard etal 2013 Willigetal2011)mammals(Loacutepez-GonzaacutelezPresleyLozanoStevensampHiggins 2012PresleyampWillig 2010) andvarious freshwateror-ganismsincludingplanktonmacroinvertebratesandfish(DallasampDrake2014Erősetal2017FernandesHenriques-SilvaPenhaZuanonampPeres-Neto2014TonkinStollJaumlhnigampHaase2016TorresampHiggins2016)
Weproposed that somemetacommunity processes and resul-tantpatternswouldnotbethesameattwodifferentspatialscalesofanalysisWefoundpositivecoherenceandturnoverinupstreamregionsandpositivecoherenceandnegativeturnoverwithnesteddistributionsindownstreamregionsThesepatternswerenotpre-dicteda prioriAttheregionalscaleaClementsiandistributionwasfoundonlyinthemidndashhighandmidndashlowsectionsofthebasinsug-gesting that species responded as groups to environmental filtersmore strongly in these middle sections of longitudinal gradientAssemblage coherence was non-significant (ie not statisticallydifferent from a random distribution) for the high and low sec-tionsoftheriverAccordingtoPresleyetal(2010)non-significant
coherence is not always an indicatorof randomstructuresDallasandDrake(2014)foundthatinmoststudiesinwhichrandompat-ternswerefoundsamplescontainedfewspeciesfewsitesorbothand therefore therewas not enough statistical power to test co-herenceusing randomisationprocedures Inourstudy therewerefewersurveysitesforthehighestandlowestsectionsoftheriverwhichmayaccountfornon-significantcoherenceinthosesectionsNonethelessFigure3revealsapatternofspeciesdistributionwithhigh turnover and boundary clumping in the high section such apatternislessdiscernibleforthelowsection
Inthelowsectionoftheriverdistributionpatternswerediffer-ent for the twoassemblageordinationaxesRandomdistributionswere inferredbasedon the firstordinationaxisandnesteddistri-butionswerefoundforthesecondaxisResultsofthesecondaxissupport our hypothesis that environmental gradients over smallerspatial scales in the low sectionmay promote nested distributionpatternsSitesinthissectionwerecharacterisedbysubstratescom-prised almost entirely of sandwith patches of leaf litter and lowvariation inwater physicochemistryDistribution patternsmay bemorelikelytobenestedwhensamplesizeissmallandenvironmen-talgradientsareshort(Tonkinetal2016)ConverselylargesamplesizesandlongenvironmentalgradientsmayincreasethelikelihoodoffindingClementsianandGleasonianpatterns
At the basin scale the total variation in assemblage structurecapturedbythemodel(19)wasdecomposedinto69purelyen-vironmental 75 shared by environmental and spatial and 46purelyspatialcomponents(eachfractionwithplt0001)Thepureenvironmental component was strongly associated with the per-centage of mud substrate small woody debris and conductivitySharedenvironmentalandspatialfactorsalsowereassociatedwiththepercentageofmudandconductivityThepure spatial compo-nentwas represented by eigenvectors fromAEM predictors thatare not easily interpretable because they integrate multiple spa-tial scales (Peres-Netoamp Legendre 2010)with small-scale spatialvariables tending tobeassociatedwithmasseffectdynamics andlarge-scalespatialvariablestendingtobeassociatedwithdispersallimitation (HeinoMeloampBini2015HeinoMeloSiqueiraetal2015) At the scale of the entire basin both processes probablyoccursimultaneously
Thepercentageofvariationexplainedbyourpartitioninganal-ysiswas low(19)acommonfinding incommunityecologystud-ies (Castillo-Escrivagrave etal 2016 Devercelli Scarabotti MayoraSchneider amp Giri 2016 Erős etal 2017 Legendre amp Legendre2012TerBraakampŠmilauer2012)Thelargeamountofunexplainedvariationcouldbeduetoseveralfactorssuchasfailuretoincludeother relevant environmental variables and spatial predictors orvariablesrelatedtootherprocessessuchasbiotic interactionsOfcoursetherealsocouldbealargeinfluenceofstochasticdynamicsSoininen(2016)reviewed322datasetsandfoundthatspatialpredic-torsobtainedfromspatialeigenvectoranalysisgenerallyexplainedasmall fractionof totalassemblagevariationwhichsuggests thatspatialpredictors fromAEMmayperformpoorly incapturingpat-ternsreflectingdispersaldynamicsMonteiroetal(2017)proposed
emspensp emsp | emsp377LOacutePEZ- DELGADO Et AL
theuseofpatchconnectivitymetricsaspredictorsofdispersaldy-namicsratherthanspatialeigenvectorsTheyfoundthatthepatchconnectivityframeworkincreasedtheamountofexplainedvariationbyasmuchas50
Becausebothpureenvironmentalandpurespatialcomponentswere statistically significant both species sortingandmasseffectdynamics could have influenced fish assemblage structure at thebasin scale (Cottenie 2005) However because the proportionexplained by the pure environmental fractionwas larger than thespatialfraction(69versus46)speciessortingwasprobablythemoreinfluentialcomponentstructuringfishassemblagesinthissys-temTheseresultsareinaccordancewithHeinoMeloampBini(2015)whofoundthatanintermediateamountofdispersalwasneededforthespeciessortingprocesssincespeciesneedtodispersefromoneplace toanother searching forsiteswith theappropriateenviron-mentalconditionstothrive
Soininen(2014)reviewed326investigationsthatusedvariationpartitioning analysis finding that environmental variables usuallyexplainedthemostvariationinassemblagecompositionandspeciessortingwasmostofteninferredSpeciessortingmaybethepreva-lentmetacommunitymodel for river and stream fish assemblages(Cottenie2005FalkeampFausch2010HeinoMeloampBini2015HeinoMeloSiqueiraetal2015)
At a smaller spatial scale we predicted that species sortingstrongly influencesassemblages inheadwaterswherehabitatsarerelativelyisolatedwithintherivernetworkwhereasassemblagesindownstreamreacheswouldhavegreaterdispersalandbemorein-fluencedbymasseffectdynamicsThesepredictionswerenotcon-firmedBasedonvariationpartitioninganalysisandthedecisiontreeofCottenie(2005)noevidencewasobtainedtosupportanyofthemetacommunity paradigmsproposedby Leibold etal (2004) Thevariation partitioning procedure could only be performed for themidndashhighandmidndashlowsectionsthathadsufficientlylargesamplesOnlytheenvironmentalfractionwassignificantandthisresultcanbepronetotypeIerror
Insummaryvariationpartitioningandmetacommunitystructureanalysesprovidedcomplementaryfindingstoinferprocessesstruc-turingfishassemblagesintheBitaRiverBothapproachesidentifiedenvironmentalfilteringandspeciessortingastheprincipalstructur-ingprocessesinthissystemVariationpartitioninganalysisimpliedthatdispersalplaysasignificantroleatthebasinscalehowevertheenvironmentalfractionexplainedmorevariationBothanalysesre-vealedassemblagepatternscorrelatedwithcomponentsofhabitatstructureSimilarconclusionshavebeenreportedfromstudiescon-ducted at smaller spatial scales inother tropical rivers (ArringtonWinemillerampLayman2005WillisWinemillerampLopez-Fernandez2005)with some also inferring that biotic interactionsplay a sig-nificant role in structuring fish assemblages within local habitats(MontantildeaWinemillerampSutton2014) Inastudyof theCinarucoRiveranOrinocotributaryintheVenezuelanLlanoswithcharacter-isticssimilartotheBitaRiverWillisetal(2005)foundthathabitatstructural complexity was strongly correlated with the functionaldiversity of fish assemblages These findings combinedwith ours
suggest that fish community structure of Neotropical rivers andstreams is influencedby localenvironmentalconditionsespeciallyaspectsassociatedwithsubstrateandhabitatstructuralcomplexitythat in turnaffect species sorting that results inClementsianpat-ternsofspeciesdistribution Improvedunderstandingof the influ-enceofdispersalenvironmentalfilteringandbioticinteractionsonspeciesassemblagesinpristinesystemswillbeessentialforeffortstoconserveandrestorebiodiversityForexampleifthespatialdis-tributionoffishesintheBitaRiverderiveslargelyfromdispersalandenvironmental filtering then strategies to conserve fish diversitymustemphasisemaintenanceofhabitatheterogeneityandconnec-tivityatappropriatespatialandtemporalscales
ACKNOWLEDG MENTS
WethankWorldWildlifeFoundation(WWF)ColombiaFundacioacutenOmachaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtandUniversidaddelTolimaforlogisticsandfinancingpartof this studyWealsowould like to thankDTaphornCDoNascimentoJGAlbornozandDMontoyafortheirassistanceinthefieldandlaboratorywork
ORCID
Edwin O Loacutepez-Delgado httpsorcidorg0000-0002-4010-1880
R E FE R E N C E S
AlmeidaRSampCetraM(2016)Longitudinalgradienteffectsonthestream fishmetacommunityNatureza amp Conservaccedilatildeo14 112ndash119httpsdoiorg101016jncon201610001
ArringtonDAWinemillerKOampLaymanCA(2005)CommunityassemblyatthepatchscaleinaspeciesrichtropicalriverOecologia144157ndash167httpsdoiorg101007s00442-005-0014-7
BlanchetFGLegendrePampBorcardD (2008a)Forwardselection of explanatory variables Ecology 89 2623ndash2632 httpsdoiorg 10189007-09861
BlanchetFGLegendrePampBorcardD(2008b)Modellingdirectionalspatialprocesses inecologicaldataEcological Modelling215325ndash336httpsdoiorg101016jecolmodel200804001
BlanchetFGLegendrePMarangerRMontiDampPepinP(2011)Modelling the effect of directional spatial ecological processes atdifferent scalesOecologia166 357ndash368 httpsdoiorg101007s00442-010-1867-y
BorcardDGillet Famp Legendre P (2011)Numerical ecology with R NewYorkSpringerhttpsdoiorg101007978-1-4419-7976-6
Brown B L amp Swan C M (2010) Dendritic network structure constrains metacommunity properties in riverine ecosystems Journal of Animal Ecology 79 571ndash580 httpsdoiorg101111 j1365-2656201001668x
Carvajal-Quintero J D Escobar F Alvarado F Villa-Navarro F AJaramillo-VillaUacuteampMaldonado-OcampoJA (2015)Variation infreshwater fish assemblages along a regional elevation gradient inthenorthernAndesColombiaEcology and Evolution52608ndash2620httpsdoiorg101002ece31539
Carvalho R A amp Tejerina-Garro F L (2015) The influence of en-vironmental variables on the functional structure of headwa-ter stream fish assemblages A study of two tropical basins in
378emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
Central Brazil Neotropical Ichthyology 13 349ndash360 httpsdoiorg1015901982-0224-20130148
Castillo-Escrivagrave A Rueda J Zamora L Hernaacutendez R Del MoralM ampMesquita-Joanes F (2016) The role of watercourse versusoverland dispersal and niche effects on ostracod distribution inMediterraneanstreams(easternIberianPeninsula)Acta Oecologica731ndash9httpsdoiorg101016jactao201602001
ChaseJMKraftNJSmithKGVellendMampInouyeBD(2011)Usingnullmodelstodisentanglevariationincommunitydissimilarityfromvariationinα-diversityEcosphere21ndash11
Clements F E (1916)Plant succession An analysis of the development of vegetationWashingtonDCCarnegieInstitutionofWashingtonhttpsdoiorg105962bhltitle56234
Cottenie K (2005) Integrating environmental and spatial processesin ecological community dynamics Ecology Letters 8 1175ndash1182httpsdoiorg101111j1461-0248200500820x
Dallas T (2014) metacom An R package for the analysis of meta-community structure Ecography 37 402ndash405 httpsdoiorg101111j1600-0587201300695x
DallasTampDrakeJM(2014)RelativeimportanceofenvironmentalgeographicandspatialvariablesonzooplanktonmetacommunitiesEcosphere51ndash13
DatryTMeloASMoyaNZubietaJDeLaBarraEampOberdorffT(2016)MetacommunitypatternsacrossthreeNeotropicalcatch-mentswithvaryingenvironmentalharshnessFreshwater Biology61277ndash292httpsdoiorg101111fwb12702
DevercelliMScarabottiPMayoraGSchneiderBampGiriF(2016)Unravelling the role of determinism and stochasticity in struc-turing the phytoplanktonic metacommunity of the Paranaacute Riverfloodplain Hydrobiologia 764 139ndash156 httpsdoiorg101007s10750-015-2363-5
Diamond JM (1975)Assemblyof species communities InMartinLCodyandJaredMDiamondeditorsEcology and evolution of com-munities(pp342ndash444)CambridgeMassBelknapPressofHarvardUniversityPress
DraySBlanchetGBorcardDGuenardGJombartTLarocqueGhellipWagnerHH(2017)adespatialMultivariatemultiscalespatialanalysisRpackageversion009
DufreneMampLegendreP (1997)Speciesassemblagesand indicatorspecies The need for a flexible asymmetrical approachEcological Monographs67345ndash366
Erős T (2017) Scaling fish metacommunities in stream networksSynthesisandfutureresearchavenuesCommunity Ecology1872ndash86httpsdoiorg10155616820171819
Erős T Takaacutecs P Specziaacuter A SchmeraD amp Saacutely P (2017) Effectof landscapecontextonfishmetacommunitystructuringinstreamnetworksFreshwater Biology62215ndash228httpsdoiorg101111fwb12857
FalkeJAampFauschKD(2010)Frommetapopulationstometacom-munities linking theorywith empirical observations of the spatialpopulationdynamicsofstreamfishesInAmericanFisheriesSocietySymposium(Vol73pp207ndash233)
FernandesIMHenriques-SilvaRPenhaJZuanonJampPeres-NetoPR(2014)Spatiotemporaldynamicsinaseasonalmetacommunitystructure is predictable The case of floodplain-fish communitiesEcography37464ndash475
Gleason H A (1926) The individualistic concept of the plant asso-ciation Bulletin of the Torrey Botanical Club 53 7ndash26 httpsdoiorg1023072479933
Heino JMeloASampBiniLM (2015)Reconceptualising thebetadiversity-environmental heterogeneity relationship in runningwater systems Freshwater Biology 60(2) 223ndash235 httpsdoiorg101111fwb12502
HeinoJMeloASSiqueiraTSoininenJValankoSampBiniLM(2015) Metacommunity organisation spatial extent and dispersal
in aquatic systems Patterns processes and prospects Freshwater Biology60845ndash869httpsdoiorg101111fwb12533
Landeiro V L Magnusson W E Melo A S Espiacuterito-Santo H MV amp Bini L M (2011) Spatial eigenfunction analyses in streamnetworks Do watercourse and overland distances produce dif-ferent results Freshwater Biology 56 1184ndash1192 httpsdoiorg101111j1365-2427201002563x
LegendrePLegendreLampLegendreP(2012)Numerical ecology 3rd EnglishedPierreLegendreandLouisLegendreAmsterdamBostonElsevier
LeiboldMAHolyoakMMouquetNAmarasekarePChaseJMHoopesMFhellipGonzalezA(2004)ThemetacommunityconceptAframeworkformulti-scalecommunityecologyEcology Letters7601ndash613httpsdoiorg101111j1461-0248200400608x
LeiboldMAampMikkelsonGM(2002)Coherencespeciesturnoverand boundary clumping Elements of meta-community structureOikos 97 237ndash250 httpsdoiorg101034j1600-07062002 970210x
Logue J B Mouquet N Peter H Hillebrand H amp TheMetacommunityWorkingGroup (2011)Empirical approaches tometacommunities A review and comparisonwith theoryTrends in Ecology amp Evolution 26 482ndash491 httpsdoiorg101016jtree201104009
Loacutepez-GonzaacutelezCPresleySJLozanoAStevensRDampHigginsCL(2012)MetacommunityanalysisofMexicanbatsEnvironmentallymediatedstructure inanareaofhighgeographicandenvironmen-tal complexity Journal of Biogeography 39 177ndash192 httpsdoiorg101111j1365-2699201102590x
MacarthurRampLevinsR (1967)The limitingsimilarityconvergenceanddivergenceofcoexistingspeciesThe American Naturalist101377ndash385httpsdoiorg101086282505
Meynard C N Lavergne S Boulangeat I Garraud L Van Es JMouquetNampThuillerW(2013)Disentanglingthedriversofmeta-community structure across spatial scales Journal of Biogeography401560ndash1571httpsdoiorg101111jbi12116
MontantildeaCGWinemillerKOampSuttonA(2014)IntercontinentalcomparisonoffishecomorphologyNullmodeltestsofcommunityassembly at thepatch scale in riversEcological Monographs84(1)91ndash107httpsdoiorg10189013-07081
MonteiroVFPaivaPCampPeres-NetoPR (2017)Aquantitativeframework to estimate the relative importance of environmentspatial variation and patch connectivity in driving communitycomposition Journal of Animal Ecology 86 316ndash326 httpsdoiorg1011111365-265612619
Mouillot D Dumay O amp Tomasini J A (2007) Limiting similaritynichefilteringandfunctionaldiversityincoastallagoonfishcommu-nitiesEstuarine Coastal and Shelf Science71443ndash456httpsdoiorg101016jecss200608022
Patterson B D amp Atmar W (1986) Nested subsets and thestructure of insular mammalian faunas and archipelagosBiological Journal of the Linnean Society 28 65ndash82 httpsdoiorg101111j1095-83121986tb01749x
Pease A A Gonzaacutelez-Diacuteaz A A Rodiles-Hernaacutendez R ampWinemiller K O (2012) Functional diversity and traitndashenviron-ment relationships of stream fish assemblages in a large tropi-cal catchment Freshwater Biology 57 1060ndash1075 httpsdoiorg101111j1365-2427201202768x
Peres-Neto P R amp Legendre P (2010) Estimating and con-trolling for spatial structure in the study of ecological commu-nities Global Ecology and Biogeography 19 174ndash184 httpsdoiorg101111j1466-8238200900506x
Peres-NetoPRLegendrePDraySampBorcardD(2006)VariationpartitioningofspeciesdatamatricesEstimationandcomparisonoffractionsEcology872614ndash2625httpsdoiorg1018900012-9658(2006)87[2614vposdm]20co2
emspensp emsp | emsp379LOacutePEZ- DELGADO Et AL
Presley S J Higgins C L ampWillig M R (2010) A comprehensiveframework for the evaluation ofmetacommunity structureOikos119908ndash917httpsdoiorg101111j1600-0706201018544x
Presley S J amp Willig M R (2010) Bat metacommunity structure on Caribbean islands and the role of endemics Global Ecology and Biogeography19185ndash199httpsdoiorg101111j1466-82382009 00505x
RCoreTeam (2017)R A language and environment for statistical com-puting Vienna Austria R Foundation for Statistical ComputingRetrievedfromhttpwwwR-projectorg
RobertsDW (2007) labdsvOrdinationandmultivariateanalysis forecologyR package version1(1)
SharmaSLegendrePDeCaacuteceresMampBoisclairD(2011)Theroleofenvironmentalandspatialprocessesinstructuringnativeandnon-native fish communities across thousands of lakes Ecography 34762ndash771httpsdoiorg101111j1600-0587201006811x
SimberloffD(1983)Competitiontheoryhypothesis-testingandothercommunityecologicalbuzzwordsThe American Naturalist122626ndash635httpsdoiorg101086284163
Soininen J (2014) A quantitative analysis of species sorting acrossorganisms and ecosystems Ecology 95 3284ndash3292 httpsdoiorg10189013-22281
SoininenJ(2016)SpatialstructureinecologicalcommunitiesmdashAquan-titative analysis Oikos 125 160ndash166 httpsdoiorg101111oik02241
TerBraakCampŠmilauerP (2012)Canoco reference manual and userrsquos guide Software for ordination (version 50)IthacaNYMicrocomputerPower
Tilman D (1982) Resource competition and community structure PrincetonNJPrincetonUniversityPress
Tonkin J D Stoll S Jaumlhnig S C amp Haase P (2016) Elements ofmetacommunity structure of river and riparian assemblagesCommunities taxonomic groups and deconstructed trait groupsEcological Complexity 25 35ndash43 httpsdoiorg101016jecocom201512002
TorresKMMampHigginsCL (2016)Taxonomicandfunctionalor-ganizationinmetacommunitystructureofstream-fishassemblagesamongandwithinriverbasinsinTexasAquatic Ecology50247ndash259httpsdoiorg101007s10452-016-9572-5
TrujilloFampLassoCA(2017)IVBiodiversidaddelriacuteoBitaVichadaColombia Serie Editorial Fauna Silvestre Neotropical (p 349)BogotaColombiaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtFundacioacutenOmacha
Vitorino-JuacuteniorOBFernandesRAgostinhoCSampPeliciceFM(2016) Riverine networks constrain β-diversity patterns amongfishassemblagesinalargeNeotropicalriverFreshwater Biology611733ndash1745httpsdoiorg101111fwb12813
Willig M R Presley S J Bloch C P Castro-Arellano I CisnerosL M Higgins C L amp Klingbeil B T (2011) Tropical metacom-munities along elevational gradients Effects of forest type andother environmental factors Oikos 120 1497ndash1508 httpsdoiorg101111j1600-0706201119218x
WillisSWinemillerKampLopez-FernandezH (2005)Habitatstruc-turalcomplexityandmorphologicaldiversityoffishassemblagesinaNeotropicalfloodplainriverOecologia142284ndash295httpsdoiorg101007s00442-004-1723-z
WinemillerKOFleckerASampHoeinghausD J (2010)Patchdy-namicsandenvironmentalheterogeneityinloticecosystemsJournal of the North American Benthological Society29 84ndash99 httpsdoiorg10189908-0481
SUPPORTING INFORMATION
Additional supporting information may be found online in theSupportingInformationsectionattheendofthearticle
How to cite this articleLoacutepez-DelgadoEOWinemillerKOVilla-NavarroFADometacommunitytheoriesexplainspatialvariationinfishassemblagestructureinapristinetropicalriverFreshw Biol 201964367ndash379 httpsdoiorg101111fwb13229
376emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
4emsp |emspDISCUSSION
In this study we applied complementary statistical analyses toinvestigate fish species distributions and variation in assemblagestructureacrossalongitudinalfluvialgradienttorevealtherelativeinfluenceoffactorsassociatedwithenvironmentalconditions(eghabitat features environmental filtering) and spatial relationshipsinfluencingdispersalResultsfromtheseanalysesprovidedabasistoinfertherelativeinfluenceofbiotic interactionsandstochasticprocessesincommunityassemblyattwospatialscalesOurresultssuggest that the fishmetacommunity in theBitaRiver exhibits aClementsiandistributionimplyingthatspeciesrespondtotheen-vironmental and fluvial gradient as groups with fairly consistentcompositions (Clements1916)Thispatternalso impliesapoten-tialeffectofenvironmentalfilteringatthescaleoftheentirebasinSimilarlythevariationpartitioninganalysisshowedthatthevaria-tion explainedby the pure environmental componentwas higherthanthepurespatialcomponentwhichalsoisconsistentwithspe-ciessortingSpeciessortingoccurswhenorganismsselecthabitatsthat convey relativelyhigh fitness andor avoidor areotherwiseeliminatedfromhabitatsthatreducetheirfitness(Soininen2014)Thesefindingssupportourpredictionthatatthebasinscaledis-persalratesarelowandassemblagestructureisstronglyinfluencedbyspeciessorting
Ourregional-scaleresultsalsorevealedaClementsiandistribu-tionoflocalassemblagecompositionThispatterncouldhavebeencausedbyspeciesresponsestospatialvariationofabioticandbioticenvironmentalfactorsSpearmancorrelationbetweenenvironmen-talvariablesandsitescoresongradientsofassemblagevariationin-dicatedthatstreamorderandchannelsizehadstrongassociationswithlocalassemblagestructureVariablesassociatedwithsubstratecomposition and instream cover also had significant associationsFishes in theBitaRiver apparently respond to theseenvironmen-talvariablesasrelativelyclumpedgroupsClementsianassemblagestructure has been found in plants (Meynard etal 2013 Willigetal2011)mammals(Loacutepez-GonzaacutelezPresleyLozanoStevensampHiggins 2012PresleyampWillig 2010) andvarious freshwateror-ganismsincludingplanktonmacroinvertebratesandfish(DallasampDrake2014Erősetal2017FernandesHenriques-SilvaPenhaZuanonampPeres-Neto2014TonkinStollJaumlhnigampHaase2016TorresampHiggins2016)
Weproposed that somemetacommunity processes and resul-tantpatternswouldnotbethesameattwodifferentspatialscalesofanalysisWefoundpositivecoherenceandturnoverinupstreamregionsandpositivecoherenceandnegativeturnoverwithnesteddistributionsindownstreamregionsThesepatternswerenotpre-dicteda prioriAttheregionalscaleaClementsiandistributionwasfoundonlyinthemidndashhighandmidndashlowsectionsofthebasinsug-gesting that species responded as groups to environmental filtersmore strongly in these middle sections of longitudinal gradientAssemblage coherence was non-significant (ie not statisticallydifferent from a random distribution) for the high and low sec-tionsoftheriverAccordingtoPresleyetal(2010)non-significant
coherence is not always an indicatorof randomstructuresDallasandDrake(2014)foundthatinmoststudiesinwhichrandompat-ternswerefoundsamplescontainedfewspeciesfewsitesorbothand therefore therewas not enough statistical power to test co-herenceusing randomisationprocedures Inourstudy therewerefewersurveysitesforthehighestandlowestsectionsoftheriverwhichmayaccountfornon-significantcoherenceinthosesectionsNonethelessFigure3revealsapatternofspeciesdistributionwithhigh turnover and boundary clumping in the high section such apatternislessdiscernibleforthelowsection
Inthelowsectionoftheriverdistributionpatternswerediffer-ent for the twoassemblageordinationaxesRandomdistributionswere inferredbasedon the firstordinationaxisandnesteddistri-butionswerefoundforthesecondaxisResultsofthesecondaxissupport our hypothesis that environmental gradients over smallerspatial scales in the low sectionmay promote nested distributionpatternsSitesinthissectionwerecharacterisedbysubstratescom-prised almost entirely of sandwith patches of leaf litter and lowvariation inwater physicochemistryDistribution patternsmay bemorelikelytobenestedwhensamplesizeissmallandenvironmen-talgradientsareshort(Tonkinetal2016)ConverselylargesamplesizesandlongenvironmentalgradientsmayincreasethelikelihoodoffindingClementsianandGleasonianpatterns
At the basin scale the total variation in assemblage structurecapturedbythemodel(19)wasdecomposedinto69purelyen-vironmental 75 shared by environmental and spatial and 46purelyspatialcomponents(eachfractionwithplt0001)Thepureenvironmental component was strongly associated with the per-centage of mud substrate small woody debris and conductivitySharedenvironmentalandspatialfactorsalsowereassociatedwiththepercentageofmudandconductivityThepure spatial compo-nentwas represented by eigenvectors fromAEM predictors thatare not easily interpretable because they integrate multiple spa-tial scales (Peres-Netoamp Legendre 2010)with small-scale spatialvariables tending tobeassociatedwithmasseffectdynamics andlarge-scalespatialvariablestendingtobeassociatedwithdispersallimitation (HeinoMeloampBini2015HeinoMeloSiqueiraetal2015) At the scale of the entire basin both processes probablyoccursimultaneously
Thepercentageofvariationexplainedbyourpartitioninganal-ysiswas low(19)acommonfinding incommunityecologystud-ies (Castillo-Escrivagrave etal 2016 Devercelli Scarabotti MayoraSchneider amp Giri 2016 Erős etal 2017 Legendre amp Legendre2012TerBraakampŠmilauer2012)Thelargeamountofunexplainedvariationcouldbeduetoseveralfactorssuchasfailuretoincludeother relevant environmental variables and spatial predictors orvariablesrelatedtootherprocessessuchasbiotic interactionsOfcoursetherealsocouldbealargeinfluenceofstochasticdynamicsSoininen(2016)reviewed322datasetsandfoundthatspatialpredic-torsobtainedfromspatialeigenvectoranalysisgenerallyexplainedasmall fractionof totalassemblagevariationwhichsuggests thatspatialpredictors fromAEMmayperformpoorly incapturingpat-ternsreflectingdispersaldynamicsMonteiroetal(2017)proposed
emspensp emsp | emsp377LOacutePEZ- DELGADO Et AL
theuseofpatchconnectivitymetricsaspredictorsofdispersaldy-namicsratherthanspatialeigenvectorsTheyfoundthatthepatchconnectivityframeworkincreasedtheamountofexplainedvariationbyasmuchas50
Becausebothpureenvironmentalandpurespatialcomponentswere statistically significant both species sortingandmasseffectdynamics could have influenced fish assemblage structure at thebasin scale (Cottenie 2005) However because the proportionexplained by the pure environmental fractionwas larger than thespatialfraction(69versus46)speciessortingwasprobablythemoreinfluentialcomponentstructuringfishassemblagesinthissys-temTheseresultsareinaccordancewithHeinoMeloampBini(2015)whofoundthatanintermediateamountofdispersalwasneededforthespeciessortingprocesssincespeciesneedtodispersefromoneplace toanother searching forsiteswith theappropriateenviron-mentalconditionstothrive
Soininen(2014)reviewed326investigationsthatusedvariationpartitioning analysis finding that environmental variables usuallyexplainedthemostvariationinassemblagecompositionandspeciessortingwasmostofteninferredSpeciessortingmaybethepreva-lentmetacommunitymodel for river and stream fish assemblages(Cottenie2005FalkeampFausch2010HeinoMeloampBini2015HeinoMeloSiqueiraetal2015)
At a smaller spatial scale we predicted that species sortingstrongly influencesassemblages inheadwaterswherehabitatsarerelativelyisolatedwithintherivernetworkwhereasassemblagesindownstreamreacheswouldhavegreaterdispersalandbemorein-fluencedbymasseffectdynamicsThesepredictionswerenotcon-firmedBasedonvariationpartitioninganalysisandthedecisiontreeofCottenie(2005)noevidencewasobtainedtosupportanyofthemetacommunity paradigmsproposedby Leibold etal (2004) Thevariation partitioning procedure could only be performed for themidndashhighandmidndashlowsectionsthathadsufficientlylargesamplesOnlytheenvironmentalfractionwassignificantandthisresultcanbepronetotypeIerror
Insummaryvariationpartitioningandmetacommunitystructureanalysesprovidedcomplementaryfindingstoinferprocessesstruc-turingfishassemblagesintheBitaRiverBothapproachesidentifiedenvironmentalfilteringandspeciessortingastheprincipalstructur-ingprocessesinthissystemVariationpartitioninganalysisimpliedthatdispersalplaysasignificantroleatthebasinscalehowevertheenvironmentalfractionexplainedmorevariationBothanalysesre-vealedassemblagepatternscorrelatedwithcomponentsofhabitatstructureSimilarconclusionshavebeenreportedfromstudiescon-ducted at smaller spatial scales inother tropical rivers (ArringtonWinemillerampLayman2005WillisWinemillerampLopez-Fernandez2005)with some also inferring that biotic interactionsplay a sig-nificant role in structuring fish assemblages within local habitats(MontantildeaWinemillerampSutton2014) Inastudyof theCinarucoRiveranOrinocotributaryintheVenezuelanLlanoswithcharacter-isticssimilartotheBitaRiverWillisetal(2005)foundthathabitatstructural complexity was strongly correlated with the functionaldiversity of fish assemblages These findings combinedwith ours
suggest that fish community structure of Neotropical rivers andstreams is influencedby localenvironmentalconditionsespeciallyaspectsassociatedwithsubstrateandhabitatstructuralcomplexitythat in turnaffect species sorting that results inClementsianpat-ternsofspeciesdistribution Improvedunderstandingof the influ-enceofdispersalenvironmentalfilteringandbioticinteractionsonspeciesassemblagesinpristinesystemswillbeessentialforeffortstoconserveandrestorebiodiversityForexampleifthespatialdis-tributionoffishesintheBitaRiverderiveslargelyfromdispersalandenvironmental filtering then strategies to conserve fish diversitymustemphasisemaintenanceofhabitatheterogeneityandconnec-tivityatappropriatespatialandtemporalscales
ACKNOWLEDG MENTS
WethankWorldWildlifeFoundation(WWF)ColombiaFundacioacutenOmachaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtandUniversidaddelTolimaforlogisticsandfinancingpartof this studyWealsowould like to thankDTaphornCDoNascimentoJGAlbornozandDMontoyafortheirassistanceinthefieldandlaboratorywork
ORCID
Edwin O Loacutepez-Delgado httpsorcidorg0000-0002-4010-1880
R E FE R E N C E S
AlmeidaRSampCetraM(2016)Longitudinalgradienteffectsonthestream fishmetacommunityNatureza amp Conservaccedilatildeo14 112ndash119httpsdoiorg101016jncon201610001
ArringtonDAWinemillerKOampLaymanCA(2005)CommunityassemblyatthepatchscaleinaspeciesrichtropicalriverOecologia144157ndash167httpsdoiorg101007s00442-005-0014-7
BlanchetFGLegendrePampBorcardD (2008a)Forwardselection of explanatory variables Ecology 89 2623ndash2632 httpsdoiorg 10189007-09861
BlanchetFGLegendrePampBorcardD(2008b)Modellingdirectionalspatialprocesses inecologicaldataEcological Modelling215325ndash336httpsdoiorg101016jecolmodel200804001
BlanchetFGLegendrePMarangerRMontiDampPepinP(2011)Modelling the effect of directional spatial ecological processes atdifferent scalesOecologia166 357ndash368 httpsdoiorg101007s00442-010-1867-y
BorcardDGillet Famp Legendre P (2011)Numerical ecology with R NewYorkSpringerhttpsdoiorg101007978-1-4419-7976-6
Brown B L amp Swan C M (2010) Dendritic network structure constrains metacommunity properties in riverine ecosystems Journal of Animal Ecology 79 571ndash580 httpsdoiorg101111 j1365-2656201001668x
Carvajal-Quintero J D Escobar F Alvarado F Villa-Navarro F AJaramillo-VillaUacuteampMaldonado-OcampoJA (2015)Variation infreshwater fish assemblages along a regional elevation gradient inthenorthernAndesColombiaEcology and Evolution52608ndash2620httpsdoiorg101002ece31539
Carvalho R A amp Tejerina-Garro F L (2015) The influence of en-vironmental variables on the functional structure of headwa-ter stream fish assemblages A study of two tropical basins in
378emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
Central Brazil Neotropical Ichthyology 13 349ndash360 httpsdoiorg1015901982-0224-20130148
Castillo-Escrivagrave A Rueda J Zamora L Hernaacutendez R Del MoralM ampMesquita-Joanes F (2016) The role of watercourse versusoverland dispersal and niche effects on ostracod distribution inMediterraneanstreams(easternIberianPeninsula)Acta Oecologica731ndash9httpsdoiorg101016jactao201602001
ChaseJMKraftNJSmithKGVellendMampInouyeBD(2011)Usingnullmodelstodisentanglevariationincommunitydissimilarityfromvariationinα-diversityEcosphere21ndash11
Clements F E (1916)Plant succession An analysis of the development of vegetationWashingtonDCCarnegieInstitutionofWashingtonhttpsdoiorg105962bhltitle56234
Cottenie K (2005) Integrating environmental and spatial processesin ecological community dynamics Ecology Letters 8 1175ndash1182httpsdoiorg101111j1461-0248200500820x
Dallas T (2014) metacom An R package for the analysis of meta-community structure Ecography 37 402ndash405 httpsdoiorg101111j1600-0587201300695x
DallasTampDrakeJM(2014)RelativeimportanceofenvironmentalgeographicandspatialvariablesonzooplanktonmetacommunitiesEcosphere51ndash13
DatryTMeloASMoyaNZubietaJDeLaBarraEampOberdorffT(2016)MetacommunitypatternsacrossthreeNeotropicalcatch-mentswithvaryingenvironmentalharshnessFreshwater Biology61277ndash292httpsdoiorg101111fwb12702
DevercelliMScarabottiPMayoraGSchneiderBampGiriF(2016)Unravelling the role of determinism and stochasticity in struc-turing the phytoplanktonic metacommunity of the Paranaacute Riverfloodplain Hydrobiologia 764 139ndash156 httpsdoiorg101007s10750-015-2363-5
Diamond JM (1975)Assemblyof species communities InMartinLCodyandJaredMDiamondeditorsEcology and evolution of com-munities(pp342ndash444)CambridgeMassBelknapPressofHarvardUniversityPress
DraySBlanchetGBorcardDGuenardGJombartTLarocqueGhellipWagnerHH(2017)adespatialMultivariatemultiscalespatialanalysisRpackageversion009
DufreneMampLegendreP (1997)Speciesassemblagesand indicatorspecies The need for a flexible asymmetrical approachEcological Monographs67345ndash366
Erős T (2017) Scaling fish metacommunities in stream networksSynthesisandfutureresearchavenuesCommunity Ecology1872ndash86httpsdoiorg10155616820171819
Erős T Takaacutecs P Specziaacuter A SchmeraD amp Saacutely P (2017) Effectof landscapecontextonfishmetacommunitystructuringinstreamnetworksFreshwater Biology62215ndash228httpsdoiorg101111fwb12857
FalkeJAampFauschKD(2010)Frommetapopulationstometacom-munities linking theorywith empirical observations of the spatialpopulationdynamicsofstreamfishesInAmericanFisheriesSocietySymposium(Vol73pp207ndash233)
FernandesIMHenriques-SilvaRPenhaJZuanonJampPeres-NetoPR(2014)Spatiotemporaldynamicsinaseasonalmetacommunitystructure is predictable The case of floodplain-fish communitiesEcography37464ndash475
Gleason H A (1926) The individualistic concept of the plant asso-ciation Bulletin of the Torrey Botanical Club 53 7ndash26 httpsdoiorg1023072479933
Heino JMeloASampBiniLM (2015)Reconceptualising thebetadiversity-environmental heterogeneity relationship in runningwater systems Freshwater Biology 60(2) 223ndash235 httpsdoiorg101111fwb12502
HeinoJMeloASSiqueiraTSoininenJValankoSampBiniLM(2015) Metacommunity organisation spatial extent and dispersal
in aquatic systems Patterns processes and prospects Freshwater Biology60845ndash869httpsdoiorg101111fwb12533
Landeiro V L Magnusson W E Melo A S Espiacuterito-Santo H MV amp Bini L M (2011) Spatial eigenfunction analyses in streamnetworks Do watercourse and overland distances produce dif-ferent results Freshwater Biology 56 1184ndash1192 httpsdoiorg101111j1365-2427201002563x
LegendrePLegendreLampLegendreP(2012)Numerical ecology 3rd EnglishedPierreLegendreandLouisLegendreAmsterdamBostonElsevier
LeiboldMAHolyoakMMouquetNAmarasekarePChaseJMHoopesMFhellipGonzalezA(2004)ThemetacommunityconceptAframeworkformulti-scalecommunityecologyEcology Letters7601ndash613httpsdoiorg101111j1461-0248200400608x
LeiboldMAampMikkelsonGM(2002)Coherencespeciesturnoverand boundary clumping Elements of meta-community structureOikos 97 237ndash250 httpsdoiorg101034j1600-07062002 970210x
Logue J B Mouquet N Peter H Hillebrand H amp TheMetacommunityWorkingGroup (2011)Empirical approaches tometacommunities A review and comparisonwith theoryTrends in Ecology amp Evolution 26 482ndash491 httpsdoiorg101016jtree201104009
Loacutepez-GonzaacutelezCPresleySJLozanoAStevensRDampHigginsCL(2012)MetacommunityanalysisofMexicanbatsEnvironmentallymediatedstructure inanareaofhighgeographicandenvironmen-tal complexity Journal of Biogeography 39 177ndash192 httpsdoiorg101111j1365-2699201102590x
MacarthurRampLevinsR (1967)The limitingsimilarityconvergenceanddivergenceofcoexistingspeciesThe American Naturalist101377ndash385httpsdoiorg101086282505
Meynard C N Lavergne S Boulangeat I Garraud L Van Es JMouquetNampThuillerW(2013)Disentanglingthedriversofmeta-community structure across spatial scales Journal of Biogeography401560ndash1571httpsdoiorg101111jbi12116
MontantildeaCGWinemillerKOampSuttonA(2014)IntercontinentalcomparisonoffishecomorphologyNullmodeltestsofcommunityassembly at thepatch scale in riversEcological Monographs84(1)91ndash107httpsdoiorg10189013-07081
MonteiroVFPaivaPCampPeres-NetoPR (2017)Aquantitativeframework to estimate the relative importance of environmentspatial variation and patch connectivity in driving communitycomposition Journal of Animal Ecology 86 316ndash326 httpsdoiorg1011111365-265612619
Mouillot D Dumay O amp Tomasini J A (2007) Limiting similaritynichefilteringandfunctionaldiversityincoastallagoonfishcommu-nitiesEstuarine Coastal and Shelf Science71443ndash456httpsdoiorg101016jecss200608022
Patterson B D amp Atmar W (1986) Nested subsets and thestructure of insular mammalian faunas and archipelagosBiological Journal of the Linnean Society 28 65ndash82 httpsdoiorg101111j1095-83121986tb01749x
Pease A A Gonzaacutelez-Diacuteaz A A Rodiles-Hernaacutendez R ampWinemiller K O (2012) Functional diversity and traitndashenviron-ment relationships of stream fish assemblages in a large tropi-cal catchment Freshwater Biology 57 1060ndash1075 httpsdoiorg101111j1365-2427201202768x
Peres-Neto P R amp Legendre P (2010) Estimating and con-trolling for spatial structure in the study of ecological commu-nities Global Ecology and Biogeography 19 174ndash184 httpsdoiorg101111j1466-8238200900506x
Peres-NetoPRLegendrePDraySampBorcardD(2006)VariationpartitioningofspeciesdatamatricesEstimationandcomparisonoffractionsEcology872614ndash2625httpsdoiorg1018900012-9658(2006)87[2614vposdm]20co2
emspensp emsp | emsp379LOacutePEZ- DELGADO Et AL
Presley S J Higgins C L ampWillig M R (2010) A comprehensiveframework for the evaluation ofmetacommunity structureOikos119908ndash917httpsdoiorg101111j1600-0706201018544x
Presley S J amp Willig M R (2010) Bat metacommunity structure on Caribbean islands and the role of endemics Global Ecology and Biogeography19185ndash199httpsdoiorg101111j1466-82382009 00505x
RCoreTeam (2017)R A language and environment for statistical com-puting Vienna Austria R Foundation for Statistical ComputingRetrievedfromhttpwwwR-projectorg
RobertsDW (2007) labdsvOrdinationandmultivariateanalysis forecologyR package version1(1)
SharmaSLegendrePDeCaacuteceresMampBoisclairD(2011)Theroleofenvironmentalandspatialprocessesinstructuringnativeandnon-native fish communities across thousands of lakes Ecography 34762ndash771httpsdoiorg101111j1600-0587201006811x
SimberloffD(1983)Competitiontheoryhypothesis-testingandothercommunityecologicalbuzzwordsThe American Naturalist122626ndash635httpsdoiorg101086284163
Soininen J (2014) A quantitative analysis of species sorting acrossorganisms and ecosystems Ecology 95 3284ndash3292 httpsdoiorg10189013-22281
SoininenJ(2016)SpatialstructureinecologicalcommunitiesmdashAquan-titative analysis Oikos 125 160ndash166 httpsdoiorg101111oik02241
TerBraakCampŠmilauerP (2012)Canoco reference manual and userrsquos guide Software for ordination (version 50)IthacaNYMicrocomputerPower
Tilman D (1982) Resource competition and community structure PrincetonNJPrincetonUniversityPress
Tonkin J D Stoll S Jaumlhnig S C amp Haase P (2016) Elements ofmetacommunity structure of river and riparian assemblagesCommunities taxonomic groups and deconstructed trait groupsEcological Complexity 25 35ndash43 httpsdoiorg101016jecocom201512002
TorresKMMampHigginsCL (2016)Taxonomicandfunctionalor-ganizationinmetacommunitystructureofstream-fishassemblagesamongandwithinriverbasinsinTexasAquatic Ecology50247ndash259httpsdoiorg101007s10452-016-9572-5
TrujilloFampLassoCA(2017)IVBiodiversidaddelriacuteoBitaVichadaColombia Serie Editorial Fauna Silvestre Neotropical (p 349)BogotaColombiaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtFundacioacutenOmacha
Vitorino-JuacuteniorOBFernandesRAgostinhoCSampPeliciceFM(2016) Riverine networks constrain β-diversity patterns amongfishassemblagesinalargeNeotropicalriverFreshwater Biology611733ndash1745httpsdoiorg101111fwb12813
Willig M R Presley S J Bloch C P Castro-Arellano I CisnerosL M Higgins C L amp Klingbeil B T (2011) Tropical metacom-munities along elevational gradients Effects of forest type andother environmental factors Oikos 120 1497ndash1508 httpsdoiorg101111j1600-0706201119218x
WillisSWinemillerKampLopez-FernandezH (2005)Habitatstruc-turalcomplexityandmorphologicaldiversityoffishassemblagesinaNeotropicalfloodplainriverOecologia142284ndash295httpsdoiorg101007s00442-004-1723-z
WinemillerKOFleckerASampHoeinghausD J (2010)Patchdy-namicsandenvironmentalheterogeneityinloticecosystemsJournal of the North American Benthological Society29 84ndash99 httpsdoiorg10189908-0481
SUPPORTING INFORMATION
Additional supporting information may be found online in theSupportingInformationsectionattheendofthearticle
How to cite this articleLoacutepez-DelgadoEOWinemillerKOVilla-NavarroFADometacommunitytheoriesexplainspatialvariationinfishassemblagestructureinapristinetropicalriverFreshw Biol 201964367ndash379 httpsdoiorg101111fwb13229
emspensp emsp | emsp377LOacutePEZ- DELGADO Et AL
theuseofpatchconnectivitymetricsaspredictorsofdispersaldy-namicsratherthanspatialeigenvectorsTheyfoundthatthepatchconnectivityframeworkincreasedtheamountofexplainedvariationbyasmuchas50
Becausebothpureenvironmentalandpurespatialcomponentswere statistically significant both species sortingandmasseffectdynamics could have influenced fish assemblage structure at thebasin scale (Cottenie 2005) However because the proportionexplained by the pure environmental fractionwas larger than thespatialfraction(69versus46)speciessortingwasprobablythemoreinfluentialcomponentstructuringfishassemblagesinthissys-temTheseresultsareinaccordancewithHeinoMeloampBini(2015)whofoundthatanintermediateamountofdispersalwasneededforthespeciessortingprocesssincespeciesneedtodispersefromoneplace toanother searching forsiteswith theappropriateenviron-mentalconditionstothrive
Soininen(2014)reviewed326investigationsthatusedvariationpartitioning analysis finding that environmental variables usuallyexplainedthemostvariationinassemblagecompositionandspeciessortingwasmostofteninferredSpeciessortingmaybethepreva-lentmetacommunitymodel for river and stream fish assemblages(Cottenie2005FalkeampFausch2010HeinoMeloampBini2015HeinoMeloSiqueiraetal2015)
At a smaller spatial scale we predicted that species sortingstrongly influencesassemblages inheadwaterswherehabitatsarerelativelyisolatedwithintherivernetworkwhereasassemblagesindownstreamreacheswouldhavegreaterdispersalandbemorein-fluencedbymasseffectdynamicsThesepredictionswerenotcon-firmedBasedonvariationpartitioninganalysisandthedecisiontreeofCottenie(2005)noevidencewasobtainedtosupportanyofthemetacommunity paradigmsproposedby Leibold etal (2004) Thevariation partitioning procedure could only be performed for themidndashhighandmidndashlowsectionsthathadsufficientlylargesamplesOnlytheenvironmentalfractionwassignificantandthisresultcanbepronetotypeIerror
Insummaryvariationpartitioningandmetacommunitystructureanalysesprovidedcomplementaryfindingstoinferprocessesstruc-turingfishassemblagesintheBitaRiverBothapproachesidentifiedenvironmentalfilteringandspeciessortingastheprincipalstructur-ingprocessesinthissystemVariationpartitioninganalysisimpliedthatdispersalplaysasignificantroleatthebasinscalehowevertheenvironmentalfractionexplainedmorevariationBothanalysesre-vealedassemblagepatternscorrelatedwithcomponentsofhabitatstructureSimilarconclusionshavebeenreportedfromstudiescon-ducted at smaller spatial scales inother tropical rivers (ArringtonWinemillerampLayman2005WillisWinemillerampLopez-Fernandez2005)with some also inferring that biotic interactionsplay a sig-nificant role in structuring fish assemblages within local habitats(MontantildeaWinemillerampSutton2014) Inastudyof theCinarucoRiveranOrinocotributaryintheVenezuelanLlanoswithcharacter-isticssimilartotheBitaRiverWillisetal(2005)foundthathabitatstructural complexity was strongly correlated with the functionaldiversity of fish assemblages These findings combinedwith ours
suggest that fish community structure of Neotropical rivers andstreams is influencedby localenvironmentalconditionsespeciallyaspectsassociatedwithsubstrateandhabitatstructuralcomplexitythat in turnaffect species sorting that results inClementsianpat-ternsofspeciesdistribution Improvedunderstandingof the influ-enceofdispersalenvironmentalfilteringandbioticinteractionsonspeciesassemblagesinpristinesystemswillbeessentialforeffortstoconserveandrestorebiodiversityForexampleifthespatialdis-tributionoffishesintheBitaRiverderiveslargelyfromdispersalandenvironmental filtering then strategies to conserve fish diversitymustemphasisemaintenanceofhabitatheterogeneityandconnec-tivityatappropriatespatialandtemporalscales
ACKNOWLEDG MENTS
WethankWorldWildlifeFoundation(WWF)ColombiaFundacioacutenOmachaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtandUniversidaddelTolimaforlogisticsandfinancingpartof this studyWealsowould like to thankDTaphornCDoNascimentoJGAlbornozandDMontoyafortheirassistanceinthefieldandlaboratorywork
ORCID
Edwin O Loacutepez-Delgado httpsorcidorg0000-0002-4010-1880
R E FE R E N C E S
AlmeidaRSampCetraM(2016)Longitudinalgradienteffectsonthestream fishmetacommunityNatureza amp Conservaccedilatildeo14 112ndash119httpsdoiorg101016jncon201610001
ArringtonDAWinemillerKOampLaymanCA(2005)CommunityassemblyatthepatchscaleinaspeciesrichtropicalriverOecologia144157ndash167httpsdoiorg101007s00442-005-0014-7
BlanchetFGLegendrePampBorcardD (2008a)Forwardselection of explanatory variables Ecology 89 2623ndash2632 httpsdoiorg 10189007-09861
BlanchetFGLegendrePampBorcardD(2008b)Modellingdirectionalspatialprocesses inecologicaldataEcological Modelling215325ndash336httpsdoiorg101016jecolmodel200804001
BlanchetFGLegendrePMarangerRMontiDampPepinP(2011)Modelling the effect of directional spatial ecological processes atdifferent scalesOecologia166 357ndash368 httpsdoiorg101007s00442-010-1867-y
BorcardDGillet Famp Legendre P (2011)Numerical ecology with R NewYorkSpringerhttpsdoiorg101007978-1-4419-7976-6
Brown B L amp Swan C M (2010) Dendritic network structure constrains metacommunity properties in riverine ecosystems Journal of Animal Ecology 79 571ndash580 httpsdoiorg101111 j1365-2656201001668x
Carvajal-Quintero J D Escobar F Alvarado F Villa-Navarro F AJaramillo-VillaUacuteampMaldonado-OcampoJA (2015)Variation infreshwater fish assemblages along a regional elevation gradient inthenorthernAndesColombiaEcology and Evolution52608ndash2620httpsdoiorg101002ece31539
Carvalho R A amp Tejerina-Garro F L (2015) The influence of en-vironmental variables on the functional structure of headwa-ter stream fish assemblages A study of two tropical basins in
378emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
Central Brazil Neotropical Ichthyology 13 349ndash360 httpsdoiorg1015901982-0224-20130148
Castillo-Escrivagrave A Rueda J Zamora L Hernaacutendez R Del MoralM ampMesquita-Joanes F (2016) The role of watercourse versusoverland dispersal and niche effects on ostracod distribution inMediterraneanstreams(easternIberianPeninsula)Acta Oecologica731ndash9httpsdoiorg101016jactao201602001
ChaseJMKraftNJSmithKGVellendMampInouyeBD(2011)Usingnullmodelstodisentanglevariationincommunitydissimilarityfromvariationinα-diversityEcosphere21ndash11
Clements F E (1916)Plant succession An analysis of the development of vegetationWashingtonDCCarnegieInstitutionofWashingtonhttpsdoiorg105962bhltitle56234
Cottenie K (2005) Integrating environmental and spatial processesin ecological community dynamics Ecology Letters 8 1175ndash1182httpsdoiorg101111j1461-0248200500820x
Dallas T (2014) metacom An R package for the analysis of meta-community structure Ecography 37 402ndash405 httpsdoiorg101111j1600-0587201300695x
DallasTampDrakeJM(2014)RelativeimportanceofenvironmentalgeographicandspatialvariablesonzooplanktonmetacommunitiesEcosphere51ndash13
DatryTMeloASMoyaNZubietaJDeLaBarraEampOberdorffT(2016)MetacommunitypatternsacrossthreeNeotropicalcatch-mentswithvaryingenvironmentalharshnessFreshwater Biology61277ndash292httpsdoiorg101111fwb12702
DevercelliMScarabottiPMayoraGSchneiderBampGiriF(2016)Unravelling the role of determinism and stochasticity in struc-turing the phytoplanktonic metacommunity of the Paranaacute Riverfloodplain Hydrobiologia 764 139ndash156 httpsdoiorg101007s10750-015-2363-5
Diamond JM (1975)Assemblyof species communities InMartinLCodyandJaredMDiamondeditorsEcology and evolution of com-munities(pp342ndash444)CambridgeMassBelknapPressofHarvardUniversityPress
DraySBlanchetGBorcardDGuenardGJombartTLarocqueGhellipWagnerHH(2017)adespatialMultivariatemultiscalespatialanalysisRpackageversion009
DufreneMampLegendreP (1997)Speciesassemblagesand indicatorspecies The need for a flexible asymmetrical approachEcological Monographs67345ndash366
Erős T (2017) Scaling fish metacommunities in stream networksSynthesisandfutureresearchavenuesCommunity Ecology1872ndash86httpsdoiorg10155616820171819
Erős T Takaacutecs P Specziaacuter A SchmeraD amp Saacutely P (2017) Effectof landscapecontextonfishmetacommunitystructuringinstreamnetworksFreshwater Biology62215ndash228httpsdoiorg101111fwb12857
FalkeJAampFauschKD(2010)Frommetapopulationstometacom-munities linking theorywith empirical observations of the spatialpopulationdynamicsofstreamfishesInAmericanFisheriesSocietySymposium(Vol73pp207ndash233)
FernandesIMHenriques-SilvaRPenhaJZuanonJampPeres-NetoPR(2014)Spatiotemporaldynamicsinaseasonalmetacommunitystructure is predictable The case of floodplain-fish communitiesEcography37464ndash475
Gleason H A (1926) The individualistic concept of the plant asso-ciation Bulletin of the Torrey Botanical Club 53 7ndash26 httpsdoiorg1023072479933
Heino JMeloASampBiniLM (2015)Reconceptualising thebetadiversity-environmental heterogeneity relationship in runningwater systems Freshwater Biology 60(2) 223ndash235 httpsdoiorg101111fwb12502
HeinoJMeloASSiqueiraTSoininenJValankoSampBiniLM(2015) Metacommunity organisation spatial extent and dispersal
in aquatic systems Patterns processes and prospects Freshwater Biology60845ndash869httpsdoiorg101111fwb12533
Landeiro V L Magnusson W E Melo A S Espiacuterito-Santo H MV amp Bini L M (2011) Spatial eigenfunction analyses in streamnetworks Do watercourse and overland distances produce dif-ferent results Freshwater Biology 56 1184ndash1192 httpsdoiorg101111j1365-2427201002563x
LegendrePLegendreLampLegendreP(2012)Numerical ecology 3rd EnglishedPierreLegendreandLouisLegendreAmsterdamBostonElsevier
LeiboldMAHolyoakMMouquetNAmarasekarePChaseJMHoopesMFhellipGonzalezA(2004)ThemetacommunityconceptAframeworkformulti-scalecommunityecologyEcology Letters7601ndash613httpsdoiorg101111j1461-0248200400608x
LeiboldMAampMikkelsonGM(2002)Coherencespeciesturnoverand boundary clumping Elements of meta-community structureOikos 97 237ndash250 httpsdoiorg101034j1600-07062002 970210x
Logue J B Mouquet N Peter H Hillebrand H amp TheMetacommunityWorkingGroup (2011)Empirical approaches tometacommunities A review and comparisonwith theoryTrends in Ecology amp Evolution 26 482ndash491 httpsdoiorg101016jtree201104009
Loacutepez-GonzaacutelezCPresleySJLozanoAStevensRDampHigginsCL(2012)MetacommunityanalysisofMexicanbatsEnvironmentallymediatedstructure inanareaofhighgeographicandenvironmen-tal complexity Journal of Biogeography 39 177ndash192 httpsdoiorg101111j1365-2699201102590x
MacarthurRampLevinsR (1967)The limitingsimilarityconvergenceanddivergenceofcoexistingspeciesThe American Naturalist101377ndash385httpsdoiorg101086282505
Meynard C N Lavergne S Boulangeat I Garraud L Van Es JMouquetNampThuillerW(2013)Disentanglingthedriversofmeta-community structure across spatial scales Journal of Biogeography401560ndash1571httpsdoiorg101111jbi12116
MontantildeaCGWinemillerKOampSuttonA(2014)IntercontinentalcomparisonoffishecomorphologyNullmodeltestsofcommunityassembly at thepatch scale in riversEcological Monographs84(1)91ndash107httpsdoiorg10189013-07081
MonteiroVFPaivaPCampPeres-NetoPR (2017)Aquantitativeframework to estimate the relative importance of environmentspatial variation and patch connectivity in driving communitycomposition Journal of Animal Ecology 86 316ndash326 httpsdoiorg1011111365-265612619
Mouillot D Dumay O amp Tomasini J A (2007) Limiting similaritynichefilteringandfunctionaldiversityincoastallagoonfishcommu-nitiesEstuarine Coastal and Shelf Science71443ndash456httpsdoiorg101016jecss200608022
Patterson B D amp Atmar W (1986) Nested subsets and thestructure of insular mammalian faunas and archipelagosBiological Journal of the Linnean Society 28 65ndash82 httpsdoiorg101111j1095-83121986tb01749x
Pease A A Gonzaacutelez-Diacuteaz A A Rodiles-Hernaacutendez R ampWinemiller K O (2012) Functional diversity and traitndashenviron-ment relationships of stream fish assemblages in a large tropi-cal catchment Freshwater Biology 57 1060ndash1075 httpsdoiorg101111j1365-2427201202768x
Peres-Neto P R amp Legendre P (2010) Estimating and con-trolling for spatial structure in the study of ecological commu-nities Global Ecology and Biogeography 19 174ndash184 httpsdoiorg101111j1466-8238200900506x
Peres-NetoPRLegendrePDraySampBorcardD(2006)VariationpartitioningofspeciesdatamatricesEstimationandcomparisonoffractionsEcology872614ndash2625httpsdoiorg1018900012-9658(2006)87[2614vposdm]20co2
emspensp emsp | emsp379LOacutePEZ- DELGADO Et AL
Presley S J Higgins C L ampWillig M R (2010) A comprehensiveframework for the evaluation ofmetacommunity structureOikos119908ndash917httpsdoiorg101111j1600-0706201018544x
Presley S J amp Willig M R (2010) Bat metacommunity structure on Caribbean islands and the role of endemics Global Ecology and Biogeography19185ndash199httpsdoiorg101111j1466-82382009 00505x
RCoreTeam (2017)R A language and environment for statistical com-puting Vienna Austria R Foundation for Statistical ComputingRetrievedfromhttpwwwR-projectorg
RobertsDW (2007) labdsvOrdinationandmultivariateanalysis forecologyR package version1(1)
SharmaSLegendrePDeCaacuteceresMampBoisclairD(2011)Theroleofenvironmentalandspatialprocessesinstructuringnativeandnon-native fish communities across thousands of lakes Ecography 34762ndash771httpsdoiorg101111j1600-0587201006811x
SimberloffD(1983)Competitiontheoryhypothesis-testingandothercommunityecologicalbuzzwordsThe American Naturalist122626ndash635httpsdoiorg101086284163
Soininen J (2014) A quantitative analysis of species sorting acrossorganisms and ecosystems Ecology 95 3284ndash3292 httpsdoiorg10189013-22281
SoininenJ(2016)SpatialstructureinecologicalcommunitiesmdashAquan-titative analysis Oikos 125 160ndash166 httpsdoiorg101111oik02241
TerBraakCampŠmilauerP (2012)Canoco reference manual and userrsquos guide Software for ordination (version 50)IthacaNYMicrocomputerPower
Tilman D (1982) Resource competition and community structure PrincetonNJPrincetonUniversityPress
Tonkin J D Stoll S Jaumlhnig S C amp Haase P (2016) Elements ofmetacommunity structure of river and riparian assemblagesCommunities taxonomic groups and deconstructed trait groupsEcological Complexity 25 35ndash43 httpsdoiorg101016jecocom201512002
TorresKMMampHigginsCL (2016)Taxonomicandfunctionalor-ganizationinmetacommunitystructureofstream-fishassemblagesamongandwithinriverbasinsinTexasAquatic Ecology50247ndash259httpsdoiorg101007s10452-016-9572-5
TrujilloFampLassoCA(2017)IVBiodiversidaddelriacuteoBitaVichadaColombia Serie Editorial Fauna Silvestre Neotropical (p 349)BogotaColombiaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtFundacioacutenOmacha
Vitorino-JuacuteniorOBFernandesRAgostinhoCSampPeliciceFM(2016) Riverine networks constrain β-diversity patterns amongfishassemblagesinalargeNeotropicalriverFreshwater Biology611733ndash1745httpsdoiorg101111fwb12813
Willig M R Presley S J Bloch C P Castro-Arellano I CisnerosL M Higgins C L amp Klingbeil B T (2011) Tropical metacom-munities along elevational gradients Effects of forest type andother environmental factors Oikos 120 1497ndash1508 httpsdoiorg101111j1600-0706201119218x
WillisSWinemillerKampLopez-FernandezH (2005)Habitatstruc-turalcomplexityandmorphologicaldiversityoffishassemblagesinaNeotropicalfloodplainriverOecologia142284ndash295httpsdoiorg101007s00442-004-1723-z
WinemillerKOFleckerASampHoeinghausD J (2010)Patchdy-namicsandenvironmentalheterogeneityinloticecosystemsJournal of the North American Benthological Society29 84ndash99 httpsdoiorg10189908-0481
SUPPORTING INFORMATION
Additional supporting information may be found online in theSupportingInformationsectionattheendofthearticle
How to cite this articleLoacutepez-DelgadoEOWinemillerKOVilla-NavarroFADometacommunitytheoriesexplainspatialvariationinfishassemblagestructureinapristinetropicalriverFreshw Biol 201964367ndash379 httpsdoiorg101111fwb13229
378emsp |emsp emspensp LOacutePEZ- DELGADO Et AL
Central Brazil Neotropical Ichthyology 13 349ndash360 httpsdoiorg1015901982-0224-20130148
Castillo-Escrivagrave A Rueda J Zamora L Hernaacutendez R Del MoralM ampMesquita-Joanes F (2016) The role of watercourse versusoverland dispersal and niche effects on ostracod distribution inMediterraneanstreams(easternIberianPeninsula)Acta Oecologica731ndash9httpsdoiorg101016jactao201602001
ChaseJMKraftNJSmithKGVellendMampInouyeBD(2011)Usingnullmodelstodisentanglevariationincommunitydissimilarityfromvariationinα-diversityEcosphere21ndash11
Clements F E (1916)Plant succession An analysis of the development of vegetationWashingtonDCCarnegieInstitutionofWashingtonhttpsdoiorg105962bhltitle56234
Cottenie K (2005) Integrating environmental and spatial processesin ecological community dynamics Ecology Letters 8 1175ndash1182httpsdoiorg101111j1461-0248200500820x
Dallas T (2014) metacom An R package for the analysis of meta-community structure Ecography 37 402ndash405 httpsdoiorg101111j1600-0587201300695x
DallasTampDrakeJM(2014)RelativeimportanceofenvironmentalgeographicandspatialvariablesonzooplanktonmetacommunitiesEcosphere51ndash13
DatryTMeloASMoyaNZubietaJDeLaBarraEampOberdorffT(2016)MetacommunitypatternsacrossthreeNeotropicalcatch-mentswithvaryingenvironmentalharshnessFreshwater Biology61277ndash292httpsdoiorg101111fwb12702
DevercelliMScarabottiPMayoraGSchneiderBampGiriF(2016)Unravelling the role of determinism and stochasticity in struc-turing the phytoplanktonic metacommunity of the Paranaacute Riverfloodplain Hydrobiologia 764 139ndash156 httpsdoiorg101007s10750-015-2363-5
Diamond JM (1975)Assemblyof species communities InMartinLCodyandJaredMDiamondeditorsEcology and evolution of com-munities(pp342ndash444)CambridgeMassBelknapPressofHarvardUniversityPress
DraySBlanchetGBorcardDGuenardGJombartTLarocqueGhellipWagnerHH(2017)adespatialMultivariatemultiscalespatialanalysisRpackageversion009
DufreneMampLegendreP (1997)Speciesassemblagesand indicatorspecies The need for a flexible asymmetrical approachEcological Monographs67345ndash366
Erős T (2017) Scaling fish metacommunities in stream networksSynthesisandfutureresearchavenuesCommunity Ecology1872ndash86httpsdoiorg10155616820171819
Erős T Takaacutecs P Specziaacuter A SchmeraD amp Saacutely P (2017) Effectof landscapecontextonfishmetacommunitystructuringinstreamnetworksFreshwater Biology62215ndash228httpsdoiorg101111fwb12857
FalkeJAampFauschKD(2010)Frommetapopulationstometacom-munities linking theorywith empirical observations of the spatialpopulationdynamicsofstreamfishesInAmericanFisheriesSocietySymposium(Vol73pp207ndash233)
FernandesIMHenriques-SilvaRPenhaJZuanonJampPeres-NetoPR(2014)Spatiotemporaldynamicsinaseasonalmetacommunitystructure is predictable The case of floodplain-fish communitiesEcography37464ndash475
Gleason H A (1926) The individualistic concept of the plant asso-ciation Bulletin of the Torrey Botanical Club 53 7ndash26 httpsdoiorg1023072479933
Heino JMeloASampBiniLM (2015)Reconceptualising thebetadiversity-environmental heterogeneity relationship in runningwater systems Freshwater Biology 60(2) 223ndash235 httpsdoiorg101111fwb12502
HeinoJMeloASSiqueiraTSoininenJValankoSampBiniLM(2015) Metacommunity organisation spatial extent and dispersal
in aquatic systems Patterns processes and prospects Freshwater Biology60845ndash869httpsdoiorg101111fwb12533
Landeiro V L Magnusson W E Melo A S Espiacuterito-Santo H MV amp Bini L M (2011) Spatial eigenfunction analyses in streamnetworks Do watercourse and overland distances produce dif-ferent results Freshwater Biology 56 1184ndash1192 httpsdoiorg101111j1365-2427201002563x
LegendrePLegendreLampLegendreP(2012)Numerical ecology 3rd EnglishedPierreLegendreandLouisLegendreAmsterdamBostonElsevier
LeiboldMAHolyoakMMouquetNAmarasekarePChaseJMHoopesMFhellipGonzalezA(2004)ThemetacommunityconceptAframeworkformulti-scalecommunityecologyEcology Letters7601ndash613httpsdoiorg101111j1461-0248200400608x
LeiboldMAampMikkelsonGM(2002)Coherencespeciesturnoverand boundary clumping Elements of meta-community structureOikos 97 237ndash250 httpsdoiorg101034j1600-07062002 970210x
Logue J B Mouquet N Peter H Hillebrand H amp TheMetacommunityWorkingGroup (2011)Empirical approaches tometacommunities A review and comparisonwith theoryTrends in Ecology amp Evolution 26 482ndash491 httpsdoiorg101016jtree201104009
Loacutepez-GonzaacutelezCPresleySJLozanoAStevensRDampHigginsCL(2012)MetacommunityanalysisofMexicanbatsEnvironmentallymediatedstructure inanareaofhighgeographicandenvironmen-tal complexity Journal of Biogeography 39 177ndash192 httpsdoiorg101111j1365-2699201102590x
MacarthurRampLevinsR (1967)The limitingsimilarityconvergenceanddivergenceofcoexistingspeciesThe American Naturalist101377ndash385httpsdoiorg101086282505
Meynard C N Lavergne S Boulangeat I Garraud L Van Es JMouquetNampThuillerW(2013)Disentanglingthedriversofmeta-community structure across spatial scales Journal of Biogeography401560ndash1571httpsdoiorg101111jbi12116
MontantildeaCGWinemillerKOampSuttonA(2014)IntercontinentalcomparisonoffishecomorphologyNullmodeltestsofcommunityassembly at thepatch scale in riversEcological Monographs84(1)91ndash107httpsdoiorg10189013-07081
MonteiroVFPaivaPCampPeres-NetoPR (2017)Aquantitativeframework to estimate the relative importance of environmentspatial variation and patch connectivity in driving communitycomposition Journal of Animal Ecology 86 316ndash326 httpsdoiorg1011111365-265612619
Mouillot D Dumay O amp Tomasini J A (2007) Limiting similaritynichefilteringandfunctionaldiversityincoastallagoonfishcommu-nitiesEstuarine Coastal and Shelf Science71443ndash456httpsdoiorg101016jecss200608022
Patterson B D amp Atmar W (1986) Nested subsets and thestructure of insular mammalian faunas and archipelagosBiological Journal of the Linnean Society 28 65ndash82 httpsdoiorg101111j1095-83121986tb01749x
Pease A A Gonzaacutelez-Diacuteaz A A Rodiles-Hernaacutendez R ampWinemiller K O (2012) Functional diversity and traitndashenviron-ment relationships of stream fish assemblages in a large tropi-cal catchment Freshwater Biology 57 1060ndash1075 httpsdoiorg101111j1365-2427201202768x
Peres-Neto P R amp Legendre P (2010) Estimating and con-trolling for spatial structure in the study of ecological commu-nities Global Ecology and Biogeography 19 174ndash184 httpsdoiorg101111j1466-8238200900506x
Peres-NetoPRLegendrePDraySampBorcardD(2006)VariationpartitioningofspeciesdatamatricesEstimationandcomparisonoffractionsEcology872614ndash2625httpsdoiorg1018900012-9658(2006)87[2614vposdm]20co2
emspensp emsp | emsp379LOacutePEZ- DELGADO Et AL
Presley S J Higgins C L ampWillig M R (2010) A comprehensiveframework for the evaluation ofmetacommunity structureOikos119908ndash917httpsdoiorg101111j1600-0706201018544x
Presley S J amp Willig M R (2010) Bat metacommunity structure on Caribbean islands and the role of endemics Global Ecology and Biogeography19185ndash199httpsdoiorg101111j1466-82382009 00505x
RCoreTeam (2017)R A language and environment for statistical com-puting Vienna Austria R Foundation for Statistical ComputingRetrievedfromhttpwwwR-projectorg
RobertsDW (2007) labdsvOrdinationandmultivariateanalysis forecologyR package version1(1)
SharmaSLegendrePDeCaacuteceresMampBoisclairD(2011)Theroleofenvironmentalandspatialprocessesinstructuringnativeandnon-native fish communities across thousands of lakes Ecography 34762ndash771httpsdoiorg101111j1600-0587201006811x
SimberloffD(1983)Competitiontheoryhypothesis-testingandothercommunityecologicalbuzzwordsThe American Naturalist122626ndash635httpsdoiorg101086284163
Soininen J (2014) A quantitative analysis of species sorting acrossorganisms and ecosystems Ecology 95 3284ndash3292 httpsdoiorg10189013-22281
SoininenJ(2016)SpatialstructureinecologicalcommunitiesmdashAquan-titative analysis Oikos 125 160ndash166 httpsdoiorg101111oik02241
TerBraakCampŠmilauerP (2012)Canoco reference manual and userrsquos guide Software for ordination (version 50)IthacaNYMicrocomputerPower
Tilman D (1982) Resource competition and community structure PrincetonNJPrincetonUniversityPress
Tonkin J D Stoll S Jaumlhnig S C amp Haase P (2016) Elements ofmetacommunity structure of river and riparian assemblagesCommunities taxonomic groups and deconstructed trait groupsEcological Complexity 25 35ndash43 httpsdoiorg101016jecocom201512002
TorresKMMampHigginsCL (2016)Taxonomicandfunctionalor-ganizationinmetacommunitystructureofstream-fishassemblagesamongandwithinriverbasinsinTexasAquatic Ecology50247ndash259httpsdoiorg101007s10452-016-9572-5
TrujilloFampLassoCA(2017)IVBiodiversidaddelriacuteoBitaVichadaColombia Serie Editorial Fauna Silvestre Neotropical (p 349)BogotaColombiaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtFundacioacutenOmacha
Vitorino-JuacuteniorOBFernandesRAgostinhoCSampPeliciceFM(2016) Riverine networks constrain β-diversity patterns amongfishassemblagesinalargeNeotropicalriverFreshwater Biology611733ndash1745httpsdoiorg101111fwb12813
Willig M R Presley S J Bloch C P Castro-Arellano I CisnerosL M Higgins C L amp Klingbeil B T (2011) Tropical metacom-munities along elevational gradients Effects of forest type andother environmental factors Oikos 120 1497ndash1508 httpsdoiorg101111j1600-0706201119218x
WillisSWinemillerKampLopez-FernandezH (2005)Habitatstruc-turalcomplexityandmorphologicaldiversityoffishassemblagesinaNeotropicalfloodplainriverOecologia142284ndash295httpsdoiorg101007s00442-004-1723-z
WinemillerKOFleckerASampHoeinghausD J (2010)Patchdy-namicsandenvironmentalheterogeneityinloticecosystemsJournal of the North American Benthological Society29 84ndash99 httpsdoiorg10189908-0481
SUPPORTING INFORMATION
Additional supporting information may be found online in theSupportingInformationsectionattheendofthearticle
How to cite this articleLoacutepez-DelgadoEOWinemillerKOVilla-NavarroFADometacommunitytheoriesexplainspatialvariationinfishassemblagestructureinapristinetropicalriverFreshw Biol 201964367ndash379 httpsdoiorg101111fwb13229
emspensp emsp | emsp379LOacutePEZ- DELGADO Et AL
Presley S J Higgins C L ampWillig M R (2010) A comprehensiveframework for the evaluation ofmetacommunity structureOikos119908ndash917httpsdoiorg101111j1600-0706201018544x
Presley S J amp Willig M R (2010) Bat metacommunity structure on Caribbean islands and the role of endemics Global Ecology and Biogeography19185ndash199httpsdoiorg101111j1466-82382009 00505x
RCoreTeam (2017)R A language and environment for statistical com-puting Vienna Austria R Foundation for Statistical ComputingRetrievedfromhttpwwwR-projectorg
RobertsDW (2007) labdsvOrdinationandmultivariateanalysis forecologyR package version1(1)
SharmaSLegendrePDeCaacuteceresMampBoisclairD(2011)Theroleofenvironmentalandspatialprocessesinstructuringnativeandnon-native fish communities across thousands of lakes Ecography 34762ndash771httpsdoiorg101111j1600-0587201006811x
SimberloffD(1983)Competitiontheoryhypothesis-testingandothercommunityecologicalbuzzwordsThe American Naturalist122626ndash635httpsdoiorg101086284163
Soininen J (2014) A quantitative analysis of species sorting acrossorganisms and ecosystems Ecology 95 3284ndash3292 httpsdoiorg10189013-22281
SoininenJ(2016)SpatialstructureinecologicalcommunitiesmdashAquan-titative analysis Oikos 125 160ndash166 httpsdoiorg101111oik02241
TerBraakCampŠmilauerP (2012)Canoco reference manual and userrsquos guide Software for ordination (version 50)IthacaNYMicrocomputerPower
Tilman D (1982) Resource competition and community structure PrincetonNJPrincetonUniversityPress
Tonkin J D Stoll S Jaumlhnig S C amp Haase P (2016) Elements ofmetacommunity structure of river and riparian assemblagesCommunities taxonomic groups and deconstructed trait groupsEcological Complexity 25 35ndash43 httpsdoiorg101016jecocom201512002
TorresKMMampHigginsCL (2016)Taxonomicandfunctionalor-ganizationinmetacommunitystructureofstream-fishassemblagesamongandwithinriverbasinsinTexasAquatic Ecology50247ndash259httpsdoiorg101007s10452-016-9572-5
TrujilloFampLassoCA(2017)IVBiodiversidaddelriacuteoBitaVichadaColombia Serie Editorial Fauna Silvestre Neotropical (p 349)BogotaColombiaInstitutodeInvestigacioacutendeRecursosBioloacutegicosAlexandervonHumboldtFundacioacutenOmacha
Vitorino-JuacuteniorOBFernandesRAgostinhoCSampPeliciceFM(2016) Riverine networks constrain β-diversity patterns amongfishassemblagesinalargeNeotropicalriverFreshwater Biology611733ndash1745httpsdoiorg101111fwb12813
Willig M R Presley S J Bloch C P Castro-Arellano I CisnerosL M Higgins C L amp Klingbeil B T (2011) Tropical metacom-munities along elevational gradients Effects of forest type andother environmental factors Oikos 120 1497ndash1508 httpsdoiorg101111j1600-0706201119218x
WillisSWinemillerKampLopez-FernandezH (2005)Habitatstruc-turalcomplexityandmorphologicaldiversityoffishassemblagesinaNeotropicalfloodplainriverOecologia142284ndash295httpsdoiorg101007s00442-004-1723-z
WinemillerKOFleckerASampHoeinghausD J (2010)Patchdy-namicsandenvironmentalheterogeneityinloticecosystemsJournal of the North American Benthological Society29 84ndash99 httpsdoiorg10189908-0481
SUPPORTING INFORMATION
Additional supporting information may be found online in theSupportingInformationsectionattheendofthearticle
How to cite this articleLoacutepez-DelgadoEOWinemillerKOVilla-NavarroFADometacommunitytheoriesexplainspatialvariationinfishassemblagestructureinapristinetropicalriverFreshw Biol 201964367ndash379 httpsdoiorg101111fwb13229