developing toxicity and pharmacokinetic models for an in vitro€¦ · abstract methods –model...

1
ABSTRACT METHODS – MODEL DEVELOPMENTS CONCLUSIONS METHODS – IN VITRO STUDIES In vitro methods capable of describing systemic effects of chemicals require use of multiple tissue types connected with a common perfusate. This arrangement allows integration of absorption, metabolism and toxicity data over extended times in vitro and provides a novel, animal-free tool for chemical, cosmetic, and pharmaceutical testing. In order to test this, a study on the uptake and distribution of acetaminophen (APAP) in a human dynamic multi-organ plate (HuDMOP™) with three tissue surrogates arranged in series: first absorption across a human 3D intestine (EpiIntestinal, Mattek Corp), then on to a liver surrogate with human primary hepatocytes in sandwich culture and then to a kidney preparation (human renal proximal tubule cells) was developed. A common perfusate with human albumin connected the three compartments. APAP was placed on the apical side of the intestinal surrogate at 0 and 24 hr. Samples were collected from all three compartments over time and analyzed for APAP by LC/MS/MS and cytotoxicity by LDH leakage. The APAP in the uptake reservoir peaked to 60.7μM at around 4 hours with a total uptake of 72% of the applied dose entering the first reservoir. A simple PK model was developed to describe the three cellular platforms and their physical arrangement. Mass balance equations were fit to experimental data to estimate uptake and transport characteristics. The inter-chamber flow rates and fitted experimental absorption rate constant, 0.79/hr, were consistent with a C max of 62.0 μM and time of maximum concentration between 3 and 4 hr in the intestine compartment. With the current platform flow rates, much lower concentrations were present in the subsequent two compartments (liver and kidney) with maximum observed concentrations of 4.5 and 2.5 versus 3.1 and 0.9 uM predicted. The interplay between platform modeling and model-directed technical improvements will make the HuDMOP results more directly applicable to expected in-life behavior of various chemicals. Developing Toxicity and Pharmacokinetic Models for an in vitro Integrated Organ Platform (HuDMOP™). AY Efremenko 2 , N Hibbard 1 , CE Hack 2 , P Mallick 2 , JA Willoughby Sr. 1 , M Andersen 2 and JM McKim, Jr. 1 For more information about the work presented here and our other capabilities, please contact us at [email protected] 1 IONTOX LLC, Kalamazoo, MI 49008, 2 ScitoVation, Research Triangle Park, NC 27713 In order to better understand the in vitro system a pharmacokinetic model was developed. Absorption across the HIE into the intestine compartment was simulated as a first-order absorption process. Intestine, kidney, and liver compartments were described by a volume, flow rate, and clearance rate. The final collection compartment was simulated as a sink accumulating any compound not retained or removed by the previous compartments. Compartment volumes were from 2.5 to 3 mL, and the flow through the system was 5 uL/min. The compartments are assumed to be well-mixed and in equilibrium with the semipermeable tubing perfusing the system. APAP and cycloheximide experiments were used to fit the absorption and clearance rates: 1. Concentration in compartment 1 (Intestine) First-order absorption rate constant (ka) 2. Concentration in compartment 2 (Liver) Michaelis-Menten metabolism (Vmax and Km), Partition between media and tissue (PA) 3. Concentration in compartment 3 (Kidney) First order elimination constant in the kidney (ku) The model outputs for all compartments and the model output in the collection were exported and plotted using Microsoft Excel. Figure 1: Schematic of Experimental Set up. A) View from the Side B) View for the Top FUTURE DIRECTIONS Model Parameters APAP Cycloheximide Units Source Absorption (ka) 0.37 0.154 1/hr Fitted Maximum Rate of Metabolism (Vmax) 0 1.19x10 -4 μmol/hr Fitted Michaelis-Menten Constant (Km) 2.19 5.23x10 -5 μM Fitted First Order Elimination in Kidney (ku) 3.93x10 -4 7.55x10 -5 1/hr Fitted Partition Liver:Media (PA) 0.86 1 --- Fitted Molecular Weight 151.163 281.35 g/mol PubChem Table 1: Chemical parameters fitted or used in the model. Figure 3: Concentration in the first three compartments fitted to the data for APAP (top) and Cycloheximide (bottom) 0.00 0.02 0.04 0.06 0.08 0.10 0.12 0.14 0.16 0.18 0.20 0 10 20 30 40 50 Amount (μmol) Time (hr) APAP – Collection Compartment Collection Compartment Model Experimental Collection 1 Experimental Collection 2 Figure 4: Amount collected the collection compartment for APAP. 0 10 20 30 40 50 60 70 0 10 20 30 40 50 Concentration (μM) Time (hr) APAP - Intestine Intenstine Model Experimental Intestine 1 Experimental Intestine 2 0 5 10 15 20 0 10 20 30 40 50 Concentration (μM) Time (hr) APAP - Kidney Kidney Model Experimental Kidney 1 Experimental Kidney 2 0 5 10 15 20 25 30 35 40 0 10 20 30 40 50 Concentration (μM) Time (hr) APAP - Liver Liver Model Experimental Liver 1 Experimental Liver 2 0.00 0.20 0.40 0.60 0.80 1.00 0 10 20 30 40 50 Concentration (μM) Time (hr) Cycloheximide - Intestine Intestine Model Intestine Experimental 0.00 0.05 0.10 0.15 0.20 0.25 0.30 0.35 0.40 0 10 20 30 40 50 Concentration (μM) Time (hr) Cycloheximide - Liver Liver Model Liver Experimental 0.00 0.05 0.10 0.15 0.20 0.25 0 10 20 30 40 50 Concentration (μM) Time (hr) Cycloheximide - Kidney Kidney Model Kidney Experimental Figure 5: Amount collected the collection compartment for cycloheximide In vitro methods capable of describing systemic effects of chemicals require use of multiple tissue types connected with a common perfusate. This arrangement allows integration of absorption, metabolism and toxicity data over extended times in vitro and provides a novel, animal-free tool for chemical, cosmetic, and pharmaceutical testing. Integration with computational modeling is key to transitioning these unique data to in vivo application, and the interplay between platform modeling and model-directed technical improvements will make the HuDMOP results more directly applicable to expected in-life behavior of various chemicals. The current data provide a basis for in silico modeling of the in vitro system. The computational model predictions represent the data well, though there appears to be more abrupt appearance in the final perfusate collection for both chemicals, and the cause is under investigation. Current thoughts for computational probing include the possibility for nonspecific binding to plastic in the system, and rate-limiting uptake into and out of the semipermeable membrane perfusing the compartments. The computational modeling approach is increasingly used as a way of mathematically representing, interpreting, and extrapolating experimental data from in vitro (and in vivo) systems. The development and model-based interrogation of such novel in vitro systems to better inform chemical kinetics and toxicity in future testing of chemicals holds significant promise for reducing animal use, time, and money, with the ultimate goal of predicting human kinetics and toxicity without animal testing. The ultimate goal of this partnership of a novel in vitro system and computational modeling is to predict the human health effects of chemical exposure. Through iterative computational and laboratory innovation, we can achieve this goal. Computational and experimental improvements continue dynamically. The integration and flexibility of the in vitro model system and the computational model allows unique opportunities for discerning the systemic response to chemical exposure. Individual tissue compartments can be isolated for focused measurement of key parameters, such as absorption and hepatic clearance. Multiple tissue compartments can be integrated, including recirculation to simulate a closed in vivo system. Toxicity metrics, such as transcriptomic response data, can also be collected from the in vitro system. Computational toxicology models may be employed to analyze these data, and possibly extrapolate to whole human responses. The ability to dynamically integrate the computational modeling and experimental data gathering capability gives this partnership a unique advantage in regard to the development of new approach methodologies (NAMs) in support of human health safety assessment without animal testing. Preparation of Plates. -DMOP™ custom designed plates (Figure 1) were used and equipped with a simulated blood system. The simulated vascular system consisted of tubing connected to a semipermeable membrane. The section of semipermeable membrane was 3 cm in length. The tubing was custom fit into the plate, such that only the semi permeable membrane was in contact with each organ compartment. A perfusion rate of 5 μl/min was used in each experiment. Cell Culture Intestinal Compartment. The EpiIntestinal™ 3D human tissue from MatTek, Corp. was used for the intestine chamber. Tissues were cultured under standard conditions on transwell inserts. Tight junctions were assessed by transepithelial electrical resistance (TEER). The EpiIntestinal™ tissues were placed into the -DMOP™ plates (Figure 1) and connected to the liver compartment via simulated blood system (Figure X). Liver Compartment. The liver compartment was simulated with Transporter Certified™ human primary hepatocytes from BIOIVT in sandwich culture. The cells were added to the -DMOP™ cup in culture media at a density of 500,000 cells/well and incubated at 37oC, 5% CO2 for 48 hr prior to beginning the experiments. Kidney Compartment: To simulate a kidney human renal proximal tubule cells from Lonza were used. The cells were added to the -DMOP cup in culture media at a density of 1.1 x 106 cells/well and incubated at 37oC, 5% CO2 for ~5 days prior to beginning the experiments. Dosing Regimen: After equilibration, the test material was added to the apical side of the intestinal chamber to simulate an oral exposure at time 0 and 24 hr. For acetaminophen (APAP) the dose was 100 μL from a 2500 μM stock, while for cycloheximide (CyHex) the dose applied was 100 μL from a 100 μM stock. Analytical Procedures. APAP and CyHex were measured by LC-MS/MS. Standard curves and QC samples were prepared in PBS and compared to standard curves and QC samples in media with and without serum. RESULTS 0 200 400 600 800 1000 1200 1400 1600 1800 2000 0 5 10 15 20 25 30 35 40 45 50 APAP Concentration (μM) Exposure Time (Hours) APAP Levels - 2500 μM Dose Intestine Liver Kidney Perfustae Figure 6: A flow chart representation of iterative model-experimentation process. A1’ = AHIEprep*ka - Q1*C1 A2' = Q1*C1 - Q2*C2/PA2 - RAM A3' = Q2*C2 Q3*C3 ku*C3 Figure 2: Schematic of the Model with Equation Collection Compartment Dose = X μmole Human Primary Hepatocytes kloss RAM = Vmax*C2/PA2/(Km+C2/PA2) ; Metabolites Presystemic loss HIE prep Q1 Q2 HIE prep’ = -AHIEprep*ka - kloss*AHIEprep RALossHIEprep’ = km1*AHIEprep A2' = Q1*C1 - Q2*C2/PA2 - RAM C2; V2 ACC’ = Q3*C3 HIE human intestinal epithelium C3; V3 Human Renal Proximal Tubule Cells Q3 A3' = Q2*C2 Q3*C3 ku*C3 VtubeA1 = 4 μL VtubeA2 = 4 μL VtubeA3 = 4 μL C1; V1 Elimination in the Kidney ku ka 0.0E+00 2.0E-04 4.0E-04 6.0E-04 8.0E-04 1.0E-03 1.2E-03 1.4E-03 1.6E-03 1.8E-03 2.0E-03 0 10 20 30 40 50 Amount (μmol) Time (hr) Cycloheximide - Collection Compartment Collections Compartment Model Experimental Collection

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Page 1: Developing Toxicity and Pharmacokinetic Models for an in vitro€¦ · ABSTRACT METHODS –MODEL DEVELOPMENTS CONCLUSIONS METHODS –IN VITRO STUDIES In vitro methods capable of describing

ABSTRACT METHODS – MODEL DEVELOPMENTS CONCLUSIONS

METHODS – IN VITRO STUDIES

In vitro methods capable of describing systemic effects of chemicals require use of

multiple tissue types connected with a common perfusate. This arrangement allows integration of

absorption, metabolism and toxicity data over extended times in vitro and provides a novel,

animal-free tool for chemical, cosmetic, and pharmaceutical testing. In order to test this, a study

on the uptake and distribution of acetaminophen (APAP) in a human dynamic multi-organ plate

(HuDMOP™) with three tissue surrogates arranged in series: first absorption across a human 3D

intestine (EpiIntestinal, Mattek Corp), then on to a liver surrogate with human primary

hepatocytes in sandwich culture and then to a kidney preparation (human renal proximal tubule

cells) was developed. A common perfusate with human albumin connected the three

compartments. APAP was placed on the apical side of the intestinal surrogate at 0 and 24 hr.

Samples were collected from all three compartments over time and analyzed for APAP by

LC/MS/MS and cytotoxicity by LDH leakage. The APAP in the uptake reservoir peaked to

60.7µM at around 4 hours with a total uptake of 72% of the applied dose entering the first

reservoir. A simple PK model was developed to describe the three cellular platforms and their

physical arrangement. Mass balance equations were fit to experimental data to estimate uptake

and transport characteristics. The inter-chamber flow rates and fitted experimental absorption rate

constant, 0.79/hr, were consistent with a Cmax of 62.0 µM and time of maximum concentration

between 3 and 4 hr in the intestine compartment. With the current platform flow rates, much

lower concentrations were present in the subsequent two compartments (liver and kidney) with

maximum observed concentrations of 4.5 and 2.5 versus 3.1 and 0.9 uM predicted. The interplay

between platform modeling and model-directed technical improvements will make the

HuDMOP results more directly applicable to expected in-life behavior of various chemicals.

Developing Toxicity and Pharmacokinetic Models for an in vitro

Integrated Organ Platform (HuDMOP™).

AY Efremenko2, N Hibbard1, CE Hack2, P Mallick2, JA Willoughby Sr.1, M Andersen2 and JM McKim, Jr.1

For more information about the work presented here and our other capabilities, please contact us at [email protected] LLC, Kalamazoo, MI 49008, 2ScitoVation, Research Triangle Park, NC 27713

In order to better understand the in vitro system a pharmacokinetic model was developed. Absorption across the HIE into the

intestine compartment was simulated as a first-order absorption process. Intestine, kidney, and liver compartments were described by

a volume, flow rate, and clearance rate. The final collection compartment was simulated as a sink accumulating any compound not

retained or removed by the previous compartments. Compartment volumes were from 2.5 to 3 mL, and the flow through the system

was 5 uL/min. The compartments are assumed to be well-mixed and in equilibrium with the semipermeable tubing perfusing the

system. APAP and cycloheximide experiments were used to fit the absorption and clearance rates:

1. Concentration in compartment 1 (Intestine) → First-order absorption rate constant (ka)

2. Concentration in compartment 2 (Liver) → Michaelis-Menten metabolism (Vmax and Km), Partition between media and

tissue (PA)

3. Concentration in compartment 3 (Kidney) → First order elimination constant in the kidney (ku)

The model outputs for all compartments and the model output in the collection were exported and plotted using Microsoft Excel.

Figure 1: Schematic of Experimental Set up. A) View from the Side B) View for the Top

FUTURE DIRECTIONS

Model Parameters APAP Cycloheximide Units Source

Absorption (ka) 0.37 0.154 1/hr Fitted

Maximum Rate of Metabolism (Vmax) 0 1.19x10-4 µmol/hr Fitted

Michaelis-Menten Constant (Km) 2.19 5.23x10-5 µM Fitted

First Order Elimination in Kidney (ku) 3.93x10-4 7.55x10-5 1/hr FittedPartition Liver:Media(PA) 0.86 1 --- Fitted

Molecular Weight 151.163 281.35 g/mol PubChem

Table 1: Chemical parameters fitted or used in the model.

Figure 3: Concentration in the first three compartments fitted to the data for APAP (top) and Cycloheximide (bottom)

0.00

0.02

0.04

0.06

0.08

0.10

0.12

0.14

0.16

0.18

0.20

0 10 20 30 40 50

Am

ou

nt

(µm

ol)

Time (hr)

APAP – Collection Compartment

CollectionCompartmentModel

ExperimentalCollection 1

ExperimentalCollection 2

Figure 4: Amount collected the collection compartment for

APAP.

0

10

20

30

40

50

60

70

0 10 20 30 40 50

Co

nce

ntr

atio

n (

µM

)

Time (hr)

APAP - Intestine

IntenstineModel

ExperimentalIntestine 1

ExperimentalIntestine 2

0

5

10

15

20

0 10 20 30 40 50

Co

nce

ntr

atio

n (

µM

)

Time (hr)

APAP - Kidney

Kidney Model

ExperimentalKidney 1

ExperimentalKidney 2

0

5

10

15

20

25

30

35

40

0 10 20 30 40 50

Co

nce

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atio

n (

µM

)

Time (hr)

APAP - Liver

Liver Model

ExperimentalLiver 1

ExperimentalLiver 2

0.00

0.20

0.40

0.60

0.80

1.00

0 10 20 30 40 50

Co

nce

ntr

atio

n (

µM

)

Time (hr)

Cycloheximide - Intestine

IntestineModel

IntestineExperimental

0.00

0.05

0.10

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0.20

0.25

0.30

0.35

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0 10 20 30 40 50

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Time (hr)

Cycloheximide - Liver

Liver Model

LiverExperimental

0.00

0.05

0.10

0.15

0.20

0.25

0 10 20 30 40 50

Co

nce

ntr

atio

n (

µM

)

Time (hr)

Cycloheximide - Kidney

Kidney Model

KidneyExperimental

Figure 5: Amount collected the collection compartment

for cycloheximide

In vitro methods capable of describing systemic effects of chemicals require use of multiple tissue

types connected with a common perfusate. This arrangement allows integration of absorption,

metabolism and toxicity data over extended times in vitro and provides a novel, animal-free tool

for chemical, cosmetic, and pharmaceutical testing. Integration with computational modeling is

key to transitioning these unique data to in vivo application, and the interplay between platform

modeling and model-directed technical improvements will make the HuDMOP results more

directly applicable to expected in-life behavior of various chemicals.

The current data provide a basis for in silico modeling of the in vitro system. The computational

model predictions represent the data well, though there appears to be more abrupt appearance in

the final perfusate collection for both chemicals, and the cause is under investigation. Current

thoughts for computational probing include the possibility for nonspecific binding to plastic in the

system, and rate-limiting uptake into and out of the semipermeable membrane perfusing the

compartments.

The computational modeling approach is increasingly used as a way of mathematically

representing, interpreting, and extrapolating experimental data from in vitro (and in vivo)

systems. The development and model-based interrogation of such novel in vitro systems to better

inform chemical kinetics and toxicity in future testing of chemicals holds significant promise for

reducing animal use, time, and money, with the ultimate goal of predicting human kinetics and

toxicity without animal testing.

The ultimate goal of this partnership of a novel in vitro system and computational modeling is to

predict the human health effects of chemical exposure. Through iterative computational and

laboratory innovation, we can achieve this goal.

Computational and experimental improvements continue dynamically. The integration and

flexibility of the in vitro model system and the computational model allows unique opportunities

for discerning the systemic response to chemical exposure. Individual tissue compartments can be

isolated for focused measurement of key parameters, such as absorption and hepatic clearance.

Multiple tissue compartments can be integrated, including recirculation to simulate a closed in

vivo system.

Toxicity metrics, such as transcriptomic response data, can also be collected from the in vitro

system. Computational toxicology models may be employed to analyze these data, and possibly

extrapolate to whole human responses.

The ability to dynamically integrate the computational modeling and experimental data gathering

capability gives this partnership a unique advantage in regard to the development of new approach

methodologies (NAMs) in support of human health safety assessment without animal testing.

Preparation of Plates. Hμ-DMOP™ custom designed plates (Figure 1) were used and equipped

with a simulated blood system. The simulated vascular system consisted of tubing connected to a

semipermeable membrane. The section of semipermeable membrane was 3 cm in length. The

tubing was custom fit into the plate, such that only the semi permeable membrane was in contact

with each organ compartment. A perfusion rate of 5 μl/min was used in each experiment.

Cell Culture

Intestinal Compartment. The EpiIntestinal™ 3D human tissue from MatTek, Corp. was used for

the intestine chamber. Tissues were cultured under standard conditions on transwell inserts. Tight

junctions were assessed by transepithelial electrical resistance (TEER). The EpiIntestinal™

tissues were placed into the Hμ-DMOP™ plates (Figure 1) and connected to the liver

compartment via simulated blood system (Figure X).

Liver Compartment. The liver compartment was simulated with Transporter Certified™ human

primary hepatocytes from BIOIVT in sandwich culture. The cells were added to the Hμ-DMOP™

cup in culture media at a density of 500,000 cells/well and incubated at 37oC, 5% CO2 for 48 hr

prior to beginning the experiments.

Kidney Compartment: To simulate a kidney human renal proximal tubule cells from Lonza

were used. The cells were added to the Hμ-DMOP cup in culture media at a density of 1.1 x 106

cells/well and incubated at 37oC, 5% CO2 for ~5 days prior to beginning the experiments.

Dosing Regimen: After equilibration, the test material was added to the apical side of the

intestinal chamber to simulate an oral exposure at time 0 and 24 hr. For acetaminophen (APAP)

the dose was 100 μL from a 2500 μM stock, while for cycloheximide (CyHex) the dose applied

was 100 μL from a 100 μM stock.

Analytical Procedures. APAP and CyHex were measured by LC-MS/MS. Standard curves and

QC samples were prepared in PBS and compared to standard curves and QC samples in media

with and without serum.

RESULTS

0

200

400

600

800

1000

1200

1400

1600

1800

2000

0 5 10 15 20 25 30 35 40 45 50

AP

AP

Co

nce

ntr

ati

on

M)

Exposure Time (Hours)

APAP Levels - 2500 µM Dose

Intestine

Liver

Kidney

Perfustae

Figure 6: A flow chart representation of iterative model-experimentation process.

A1’ = AHIEprep*ka - Q1*C1

A2' = Q1*C1 - Q2*C2/PA2 - RAM

A3' = Q2*C2 – Q3*C3 – ku*C3

Figure 2: Schematic of the Model with Equation

Collection Compartment

Dose = X µmole

Human Primary Hepatocytes

kloss

RAM = Vmax*C2/PA2/(Km+C2/PA2) ;

Metabolites

Presystemic lossHIE prep

Q1Q2

HIE prep’ = -AHIEprep*ka - kloss*AHIEprep

RALossHIEprep’ = km1*AHIEprep

A2' = Q1*C1 - Q2*C2/PA2 - RAM

C2; V2

ACC’ = Q3*C3

HIE – human intestinal epithelium

C3; V3Human Renal Proximal

Tubule Cells

Q3

A3' = Q2*C2 – Q3*C3 – ku*C3

VtubeA1 = 4 µL

VtubeA2 = 4 µL VtubeA3 = 4 µLC1; V1

Elimination in

the Kidney

ku

ka

0.0E+00

2.0E-04

4.0E-04

6.0E-04

8.0E-04

1.0E-03

1.2E-03

1.4E-03

1.6E-03

1.8E-03

2.0E-03

0 10 20 30 40 50

Am

ou

nt

(µm

ol)

Time (hr)

Cycloheximide - Collection Compartment

CollectionsCompartmentModel

ExperimentalCollection