dcc radical sharing meeting
DESCRIPTION
Slides from the Digital Curation Centre's 4th annual conferenceTRANSCRIPT
![Page 1: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/1.jpg)
dcc conferenceedinburgh, scotland
radical sharing: transforming science?
john wilbankscreative commons / science commons
![Page 2: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/2.jpg)
1. the “alternative” to radical sharing is sharing inefficiently.
![Page 3: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/3.jpg)
![Page 4: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/4.jpg)
science is not unlike wikipedia...
![Page 5: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/5.jpg)
science is not unlike wikipedia...
![Page 6: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/6.jpg)
it is based on publishing (make public)
![Page 7: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/7.jpg)
it advances via individual action
![Page 8: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/8.jpg)
it advances discrete edit by discrete edit
![Page 9: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/9.jpg)
science is not unlike wikipedia...
![Page 10: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/10.jpg)
...except authenticated, and expensive.
science is not unlike wikipedia...
![Page 11: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/11.jpg)
given trust ratings by peer review
![Page 12: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/12.jpg)
![Page 13: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/13.jpg)
...except authenticated, and expensive.
science is not unlike wikipedia...
(and slow!)
![Page 14: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/14.jpg)
and what of the curator?
![Page 15: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/15.jpg)
“necessarily involves tangible objects of some sort”
![Page 16: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/16.jpg)
from a technical perspective
![Page 17: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/17.jpg)
from a technical perspective
![Page 18: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/18.jpg)
inefficient and expensive ecosystem of processes to peer-produce and
review scholarly content
![Page 19: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/19.jpg)
![Page 20: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/20.jpg)
disruptive processes can’t be planned in advance.
![Page 21: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/21.jpg)
disruptive processes can’t be planned in advance.
planned innovation tends to be incremental, and slow.
![Page 22: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/22.jpg)
disruptive processes can’t be planned in advance.
planned innovation tends to be incremental, and slow.
...and not innovative.
![Page 23: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/23.jpg)
![Page 24: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/24.jpg)
![Page 25: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/25.jpg)
![Page 26: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/26.jpg)
![Page 27: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/27.jpg)
![Page 28: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/28.jpg)
2.
stable systems are resistant to change on multiple levels.
![Page 29: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/29.jpg)
![Page 30: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/30.jpg)
© creative expression
![Page 31: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/31.jpg)
the container, not the facts.
![Page 32: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/32.jpg)
the container, not the facts.
but © locks the container.
![Page 33: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/33.jpg)
IGFBP-5 plays a role in the regulation of cellular senescence via a p53-dependent pathway and in aging-associated vascular diseases
![Page 34: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/34.jpg)
IGFBP-5 plays a role in the regulation of cellular senescence via a p53-dependent pathway and in aging-associated vascular diseases
![Page 35: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/35.jpg)
http://orpheus-1.ucsd.edu/acq/license/cdlelsevier2004.pdf
indexing: disallowed.
![Page 36: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/36.jpg)
![Page 37: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/37.jpg)
what do these ideas mean in
a world of integrated data?
![Page 38: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/38.jpg)
creativework?
![Page 39: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/39.jpg)
![Page 40: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/40.jpg)
![Page 41: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/41.jpg)
![Page 42: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/42.jpg)
40 minutes per year
![Page 43: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/43.jpg)
![Page 44: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/44.jpg)
nih policy.
![Page 45: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/45.jpg)
![Page 46: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/46.jpg)
i can has repository staff?
![Page 47: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/47.jpg)
Dorothea Salo, http://cavlec.yarinareth.net/2008/10/31/miniature-disasters-and-minor-catastrophes/
![Page 48: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/48.jpg)
the existing system is robust against disruption
the existing system is robust against disruption
![Page 49: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/49.jpg)
3.
reports from the front lines: building a commons is really, really hard - and can’t
be done without sharing.
![Page 50: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/50.jpg)
Open Access Content
![Page 51: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/51.jpg)
“running code”
![Page 52: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/52.jpg)
![Page 53: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/53.jpg)
image from the public library of sciencelicensed to the public under CC-BY 3.0
>1000 journals under CC
c
![Page 54: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/54.jpg)
![Page 55: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/55.jpg)
![Page 56: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/56.jpg)
running policy code(w. SPARC)
![Page 57: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/57.jpg)
+
![Page 58: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/58.jpg)
+
+
+ +
+
++ +
is it legal?
![Page 59: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/59.jpg)
a protocol, not a license
![Page 60: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/60.jpg)
conflicts with the protection instinct
![Page 61: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/61.jpg)
conflicts with the protection instinct
the protection instinct is sometimes an instinct to protect “freedom”
![Page 62: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/62.jpg)
solves the legal problem
![Page 63: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/63.jpg)
but not the container problem.
![Page 64: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/64.jpg)
building a web for data:the “semantic web”
![Page 65: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/65.jpg)
Web page Web pagelinks to
making computers understand links between documents
![Page 66: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/66.jpg)
![Page 67: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/67.jpg)
drinking coffee feel awakecauses
making computers understand relationships between concepts
![Page 68: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/68.jpg)
drinking coffee feel awakecauses
http://ontology.foo.org/drinking coffee http://ontology.foo.org/feel awake http://ontology.foo.org/receptor
http://ontology.foo.org/causes
![Page 69: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/69.jpg)
coffee
“coffee”
“cafe”
“kopi” http://ontology.foo.org/coffee
use the web to integrate information from different places and different names
![Page 70: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/70.jpg)
(too much work for coffee)
![Page 71: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/71.jpg)
![Page 72: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/72.jpg)
(radical sharing starts to look pretty good)
![Page 73: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/73.jpg)
web 2.0, science 3.0, what about making Google work better?
![Page 74: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/74.jpg)
over 200years at
one paper/day
![Page 75: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/75.jpg)
what you want is a list of genes.
not a list of documents.
![Page 76: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/76.jpg)
Open SourceData Integration
![Page 77: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/77.jpg)
a repository of ontologies, namespaces, and integrated
databases.
![Page 78: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/78.jpg)
DRD1, 1812 adenylate cyclase activationADRB2, 154 adenylate cyclase activationADRB2, 154 arrestin mediated desensitization of G-protein coupled receptor protein signaling pathwayDRD1IP, 50632 dopamine receptor signaling pathwayDRD1, 1812 dopamine receptor, adenylate cyclase activating pathwayDRD2, 1813 dopamine receptor, adenylate cyclase inhibiting pathwayGRM7, 2917 G-protein coupled receptor protein signaling pathwayGNG3, 2785 G-protein coupled receptor protein signaling pathwayGNG12, 55970 G-protein coupled receptor protein signaling pathwayDRD2, 1813 G-protein coupled receptor protein signaling pathwayADRB2, 154 G-protein coupled receptor protein signaling pathwayCALM3, 808 G-protein coupled receptor protein signaling pathwayHTR2A, 3356 G-protein coupled receptor protein signaling pathwayDRD1, 1812 G-protein signaling, coupled to cyclic nucleotide second messengerSSTR5, 6755 G-protein signaling, coupled to cyclic nucleotide second messengerMTNR1A, 4543 G-protein signaling, coupled to cyclic nucleotide second messengerCNR2, 1269 G-protein signaling, coupled to cyclic nucleotide second messengerHTR6, 3362 G-protein signaling, coupled to cyclic nucleotide second messengerGRIK2, 2898 glutamate signaling pathwayGRIN1, 2902 glutamate signaling pathwayGRIN2A, 2903 glutamate signaling pathwayGRIN2B, 2904 glutamate signaling pathwayADAM10, 102 integrin-mediated signaling pathwayGRM7, 2917 negative regulation of adenylate cyclase activityLRP1, 4035 negative regulation of Wnt receptor signaling pathwayADAM10, 102 Notch receptor processingASCL1, 429 Notch signaling pathwayHTR2A, 3356 serotonin receptor signaling pathwayADRB2, 154 transmembrane receptor protein tyrosine kinase activation (dimerization)PTPRG, 5793 transmembrane receptor protein tyrosine kinase signaling pathwayEPHA4, 2043 transmembrane receptor protein tyrosine kinase signaling pathwayNRTN, 4902 transmembrane receptor protein tyrosine kinase signaling pathwayCTNND1, 1500 Wnt receptor signaling pathway`
![Page 79: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/79.jpg)
e pluribus unum.
![Page 80: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/80.jpg)
prefix go: <http://purl.org/obo/owl/GO#>prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
prefix owl: <http://www.w3.org/2002/07/owl#>prefix mesh: <http://purl.org/commons/record/mesh/>
prefix sc: <http://purl.org/science/owl/sciencecommons/>prefix ro: <http://www.obofoundry.org/ro/ro.owl#>
select ?genename ?processnamewhere
{ graph <http://purl.org/commons/hcls/pubmesh> { ?paper ?p mesh:D017966 .
?article sc:identified_by_pmid ?paper. ?gene sc:describes_gene_or_gene_product_mentioned_by ?article.
} graph <http://purl.org/commons/hcls/goa>
{ ?protein rdfs:subClassOf ?res. ?res owl:onProperty ro:has_function.
?res owl:someValuesFrom ?res2. ?res2 owl:onProperty ro:realized_as.
?res2 owl:someValuesFrom ?process. graph <http://purl.org/commons/hcls/20070416/classrelations>
{{?process <http://purl.org/obo/owl/obo#part_of> go:GO_0007166} union
{?process rdfs:subClassOf go:GO_0007166 }} ?protein rdfs:subClassOf ?parent.
?parent owl:equivalentClass ?res3. ?res3 owl:hasValue ?gene.
} graph <http://purl.org/commons/hcls/gene>
{ ?gene rdfs:label ?genename } graph <http://purl.org/commons/hcls/20070416>
{ ?process rdfs:label ?processname}}
Mesh: Pyramidal Neurons
Pubmed: Journal Articles
Entrez Gene: Genes
GO: Signal Transduction
we can transform complex queries into links
![Page 81: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/81.jpg)
http://hcls1.csail.mit.edu:8890/sparql/?query=prefix%20go%3A%20%3Chttp%3A%2F%2Fpurl.org%2Fobo%2Fowl%2FGO%23%3E%0Aprefix%20rdfs%3A%20%3Chttp%3A%2F%2Fwww.w3.org%2F2000%2F01%2Frdf-schema%23%3E%0Aprefix%20owl%3A%20%3Chttp%3A%2F%2Fwww.w3.org%2F2002%2F07%2Fowl%23%3E%0Aprefix%20mesh%3A%20%3Chttp%3A%2F%2Fpurl.org%2Fcommons%2Frecord%2Fmesh%2F%3E%0Aprefix%20sc%3A%20%3Chttp%3A%2F%2Fpurl.org%2Fscience%2Fowl%2Fsciencecommons%2F%3E%0Aprefix%20ro%3A%20%3Chttp%3A%2F%2Fwww.obofoundry.org%2Fro%2Fro.owl%23%3E%0A%0Aselect%20%3Fgenename%20%3Fprocessname%0Awhere%0A%7B%20%20graph%20%3Chttp%3A%2F%2Fpurl.org%2Fcommons%2Fhcls%2Fpubmesh%3E%0A%20%20%20%20%20%7B%20%3Fpaper%20%3Fp%20mesh%3AD017966%20.%0A%20%20%20%20%20%20%20%3Farticle%20sc%3Aidentified_by_pmid%20%3Fpaper.%0A%20%20%20%20%20%20%20%3Fgene%20sc%3Adescribes_gene_or_gene_product_mentioned_by%20%3Farticle.%0A%20%20%20%20%20%7D%0A%20%20%20graph%20%3Chttp%3A%2F%2Fpurl.org%2Fcommons%2Fhcls%2Fgoa%3E%0A%20%20%20%20%20%7B%20%3Fprotein%20rdfs%3AsubClassOf%20%3Fres.%0A%20%20%20%20%20%20%20%3Fres%20owl%3AonProperty%20ro%3Ahas_function.%0A%20%20%20%20%20%20%20%3Fres%20owl%3AsomeValuesFrom%20%3Fres2.%0A%20%20%20%20%20%20%20%3Fres2%20owl%3AonProperty%20ro%3Arealized_as.%0A%20%20%20%20%20%20%20%3Fres2%20owl%3AsomeValuesFrom%20%3Fprocess.%0A%20%20%20graph%20%3Chttp%3A%2F%2Fpurl.org%2Fcommons%2Fhcls%2F20070416%2Fclassrelations%3E%0A%20%20%20%20%20%7B%7B%3Fprocess%20%3Chttp%3A%2F%2Fpurl.org%2Fobo%2Fowl%2Fobo%23part_of%3E%20go%3AGO_0007166%7D%0A%20%20%20%20%20%20%20union%0A%20%20%20%20%20%20%7B%3Fprocess%20rdfs%3AsubClassOf%20go%3AGO_0007166%20%7D%7D%0A%20%20%20%20%20%20%20%3Fprotein%20rdfs%3AsubClassOf%20%3Fparent.%0A%20%20%20%20%20%20%20%3Fparent%20owl%3AequivalentClass%20%3Fres3.%0A%20%20%20%20%20%20%20%3Fres3%20owl%3AhasValue%20%3Fgene.%0A%20%20%20%20%20%20%7D%0A%20%20%20graph%20%3Chttp%3A%2F%2Fpurl.org%2Fcommons%2Fhcls%2Fgene%3E%0A%20%20%20%20%20%7B%20%3Fgene%20rdfs%3Alabel%20%3Fgenename%20%7D%0A%20%20%20graph%20%3Chttp%3A%2F%2Fpurl.org%2Fcommons%2Fhcls%2F20070416%3E%0A%20%20%20%20%20%7B%20%3Fprocess%20rdfs%3Alabel%20%3Fprocessname%7D%0A%7D&format=&maxrows=50
we can transform complex queries into links
![Page 82: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/82.jpg)
we can transform complex queries into links
![Page 83: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/83.jpg)
prefix go: <http://purl.org/obo/owl/GO#>prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>prefix owl: <http://www.w3.org/2002/07/owl#>prefix mesh: <http://purl.org/commons/record/mesh/>prefix sc: <http://purl.org/science/owl/sciencecommons/>prefix ro: <http://www.obofoundry.org/ro/ro.owl#>
select ?genename ?processnamewhere{ graph <http://purl.org/commons/hcls/pubmesh>
{ ?paper ?p mesh:D009369 . ?article sc:identified_by_pmid ?paper. ?gene sc:describes_gene_or_gene_product_mentioned_by ?article. } graph <http://purl.org/commons/hcls/goa> { ?protein rdfs:subClassOf ?res. ?res owl:onProperty ro:has_function. ?res owl:someValuesFrom ?res2. ?res2 owl:onProperty ro:realized_as. ?res2 owl:someValuesFrom ?process. graph <http://purl.org/commons/hcls/20070416/classrelations>
{{?process <http://purl.org/obo/owl/obo#part_of> go:GO_0006610} union
{?process rdfs:subClassOf go:GO_0006610 }} ?protein rdfs:subClassOf ?parent. ?parent owl:equivalentClass ?res3. ?res3 owl:hasValue ?gene. } graph <http://purl.org/commons/hcls/gene> { ?gene rdfs:label ?genename } graph <http://purl.org/commons/hcls/20070416> { ?process rdfs:label ?processname}}
we can help scholars “remix” queries
Mesh: Cancer
GO: Ribosomal Protein
![Page 84: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/84.jpg)
we can build a corpus of queries as links
![Page 85: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/85.jpg)
we can re-use cultural tools for scholarship
![Page 86: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/86.jpg)
4.
radical sharing is a smart choice.
![Page 87: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/87.jpg)
simple + open = WIN
![Page 88: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/88.jpg)
![Page 89: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/89.jpg)
![Page 90: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/90.jpg)
physical
code
content
![Page 91: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/91.jpg)
physical
code
content
knowledge
![Page 92: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/92.jpg)
open copyright, balanced incentives, and distributed workloads
![Page 93: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/93.jpg)
the infrastructure for this is very, very shaky.
![Page 94: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/94.jpg)
prefix dc: <http://purl.org/dc/elements/1.1/> prefix skos: <http://www.w3.org/2004/02/skos/core#> prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> prefix owl: <http://www.w3.org/2002/07/owl#> prefix sc: <http://purl.org/science/owl/sciencecommons/> prefix foaf: <http://xmlns.com/foaf/0.1/>
![Page 95: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/95.jpg)
what are the odds that the organizations making the namespaces will be here in 50 years? 100 years?
![Page 96: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/96.jpg)
and what about ontologies?
![Page 97: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/97.jpg)
•extension (quality control: spam and junk)
•remix (brand confusion, loss of integrity and attribution)
•formats (failure to adhere to common protocols or technology)
•persistence (the transient nature of all Web things...)
![Page 98: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/98.jpg)
![Page 99: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/99.jpg)
![Page 100: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/100.jpg)
“it’s complicated”
![Page 101: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/101.jpg)
![Page 102: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/102.jpg)
“In any case, it is clear that a library containing all possible books, arranged at random, is equivalent (as a source of
information) to a library containing zero books.”
http://en.wikipedia.org/wiki/The_Library_of_Babel
![Page 103: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/103.jpg)
exponential content growth
![Page 104: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/104.jpg)
0
1.25
2.50
3.75
5.00
1990 1994 1998 2002
our brain capacity
![Page 105: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/105.jpg)
but if we can work together...
![Page 106: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/106.jpg)
![Page 107: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/107.jpg)
conclusion?
![Page 108: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/108.jpg)
don’t wait.
![Page 109: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/109.jpg)
use existing systems.
![Page 110: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/110.jpg)
enlist everyone to curate.
![Page 111: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/111.jpg)
create new ways to measure.
![Page 112: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/112.jpg)
invest in curation.
![Page 113: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/113.jpg)
free as in speech
![Page 114: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/114.jpg)
free as in speech
free as in beer
![Page 115: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/115.jpg)
free as in a puppy
free as in speech
free as in beer
![Page 116: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/116.jpg)
free as in a puppy
free as in speech
free as in beer
Average Cost Of 100 Pound Dog Over A Year
Good Quality Dog Food$70 x 12 = $840Dog Accessories (collar, leash, etc.)$30Dog Toys$30 - $50Vaccines$35Flea, Tick, & Heartworm Prevention$320Dog Treats$200Boarding$100 - $200 (at $15 - $20 a day)Emergency Costs$0 - $2500 or moreTotal$1375 or much more
![Page 117: DCC Radical Sharing Meeting](https://reader034.vdocuments.us/reader034/viewer/2022052618/554bc453b4c9053a298b5472/html5/thumbnails/117.jpg)
thank you
http://sciencecommons.org