cytokinesis in fission yeast: modeling the assembly of the...
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Cytokinesis in fission yeast:
Modeling the assembly of the contractile ring
UBC
May 25, 2012
Nikola Ojkic, Dimitrios Vavylonis
Department of Physics, Lehigh University
Damien Laporte, Jian-Qiu Wu
Department of Molecular Genetics and
Department of Molecular and Cellular Biochemistry
The Ohio State University
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Cell polarizarion, model of Cdc42 oscillations
(with Fulvia Verde, Univ of Miami)
CRIB-GFP LifeAct-mCherry
Regulation of actin assembly at the leading edge
(with Naoki Watanabe, Tohoku University)
Projects in actin cytoskeleton dynamics
● use of model biological systems
● coarse-grained modeling
Image analysis methods to quantify patterns
Jfilament, Cytoskeleton 2010
Speckle TrackerJ Biophys. J. 2011 ImageJ plugins
M. Das, T. Drake, D. Wiley, P. Buchwald,
D. Vavylonis and F. Verde (Science, 2012). G. L. Ryan, H. Petroccia, N. Watanabe and
D. Vavylonis Biophys. J. (2012).
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CHD-GFP
binds to sides of
actin filaments
spindle poles
Spb1
Vavylonis, Wu, et al. Science 2008
Actin Cytoskeleton in Cell Division
fission yeast cdc25-22 cell
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Contractile ring assembles from ~ 65 myosin II nodes in ~ 10 min
~ 40 myosin II (Myo2p) molecules/node
~ 2 formin Cdc12p dimers/node
Mid1p (annilin homologue) Wu and Pollard, Science 2005
Rlc1p-3GFP
Vavylonis, Wu, Hao, O’Shaughnessy, Pollard, Science 2008 spinning disk confocal microscopy
10 min
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Formins nucleate actin filaments and
remain associated with the growing end
purified fluorescent
actin + formin Bni1p
profilin actin
FH1 FH2
actin formin dimer
Kovar, Pollard. PNAS (2004)
Vavylonis, Kovar, O’Shaughnessy, Pollard Mol. Cell 2006
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time
numerical simulation
pattern and dynamics of connections is important
0 100 200 300 400 500 600 sec
Model with static connections condenses nodes into clumps
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15x time lapse
10 minutes
each frame:
average of 6
Nodes move in stochastic manner, making many
starts, stops and changes of direction
nm/sec30v
sec20
typical node speed
typical duration
Vavylonis, Wu, Hao, O’Shaughnessy, Pollard, Science 2008
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Diffusive motion of stationary nodes
15x, 200s total
mean square displacement
(nm
2)
pNvD
kTF 4
consistent with
force exerted
by few molecular
motors
/secnm30 2Ddiffusive stage
thermal (?) motion
condensation stage:
velocity in response
to force
nm/sec30v
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Actin filament assembly and disassembly around nodes
4x time lapse (0.3 s/frame) GFP-CHD, Rlc1p-tdTomato (static) single confocal slice
cdc25-22 cell
2X time lapse
0.2 s/frame
GFP-CHD
Rlc1p-tdTomato
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actin filament
polymerization
m/sec2.0~
actin filament capture
nm 100~cr
traction on filaments
between nodes
pNF 4
lifetime of connections
lifetime of filaments
sec 20~
sec 20~
Dynamic reestablishment of connections plasticity of network
Search, capture, pull and release model
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Ring formation by SCPR and dependence on parameter values
red: nodes
green: actin filaments
m/sec2.0 polv
m/sec04.0 polv
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Hachet and Simanis, Genes and Development, 2008 Chen and Pollard, JCB 2011: cofilin mutants form clumps Theory of clump formation kinetics: Ojkic and Vavylonis, Phys Rev Lett 2010
Formin Mutant: clump formation
Wild type: robust ring formation
Many mutant cells form clumps
ring
clumps
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Linear myosin structures appear near the end of ring assembly
1µm
Rlc1p-mRFP1
Rlc1p-3GFP WT
1µm
Ojkic, Wu, Vavylonis J. Phys. Cond Matt (2011)
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SCPR Point A Point B Point A
(100 nodes, w=3.2 m)
Point B (200 nodes, w=3.2 m)
WT cdc25-22
SCPR + LOCAL NODE ALIGNMENT
Ojkic, Wu,
Vavylonis
J. Phys. Cond.
Matt. (2011)
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Radial projections:
In α-actinin deletion, myosin nodes
condense into clumps.
D. Laporte, N. Ojkic, D. Vavylonis and J.-Q. Wu (submitted)
Normal node condensation depends on cross-linkers
Rlc1-3GFP
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Overexpressing α-actinin makes nodes condense into meshworks
CHD-GFP
actin marker
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Actin filaments modeled as semi-flexible polymers using Langevin dynamics
bendspthermal
iiii
bdt
dFFF
r
0l
Thermal force:
Bending force:
model of actin filament
• no long range hydrodynamics
• l0 represents ≈ 70 actin monomers
Kim, T., W. Hwang, and R.D. Kamm, 2009. Experimental Mechanics, 49:91-104.
Pasquali, M. and D.C. Morse, 2002, J. Chem. Phys. 116:1834-1838.
Spring force:
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0.0001
0.001
0.01
0.1
1
10
1 10
B
D
n (
s)
Fourier mode, n
simulation theory
Gittes, F., B. Mickey, J. Nettleton, and J. Howard. 1993. J. Cell Biol. 120:923
4))2/1(
(
n
Lbn
flexural rigidity in water
2/0
2
20
2)(
llp
Dpe
llP
Curvature distribution
Relaxation Dynamics
0 1 2 3 40.00
0.02
0.04
0.06
0.08
m 1P
robab
ility
lpsim = 10.6 (3) m
lptheo = 10 m
curvature, m-1
Validation of semiflexible polymer dynamics
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Revised SCPR with semi-flexible filaments
search & capture pull
cross-linking
nm500
cross r
crossr
)(rU
r0
stiffness kcross
We assume a simple spring potential is sufficient
to capture morphological changes
slowing down of movement inside a bundle
maintainance of angle of polymerization
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a = 0
a = 0.7
a = 1
Simulations as function of cross-linking strength
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Simulations as function of cross-linking strength
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D. Laporte, N. Ojkic, D. Vavylonis and J.-Q. Wu (submitted).
simulation results
experimental results
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Optimal values of kcross and α make bundles of parallel+antiparallalel filaments
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Simulations suggest that cross-linkers bind dynamically
to actin filaments, contributing to alignment and damping
pN7.00cross lka
Friction force per cross-linked
filament bead Estimate of drag force per a-actinin
from in vitro experiments ~ 0.012 pN Greenberg and Moore Cytoskeleton 2010
Suggests a few cross-linkers per micron
in fission yeast
In vitro, dissociation rate of
a-actinin ~ 1 s-1 or faster
(Xu et al., JBC 1998;
Strehle et al., Eur. Biophys. J. 2011
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Myosin overexpression can rescue cross-linker overexpression phenotype
2x m
yo
2 4
1n
mt1
-ain
1
simulation results
experimental results
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Myosin activity is essential for node condensation
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Acknowledgments
Nikola Ojkic (Lehigh)
Damien Laporte (OSU)
Jian-Qiu Wu (OSU) Support: NIH (Wu, Vavylonis)