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COVID-19 DiagnosticsEsther Babady, PhD, D (ABMM), FIDSADirector, Clinical Microbiology ServiceDepartments of Laboratory Medicine and Medicine
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ASM Virtual Congressional Briefing • May 27, 2020
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COVID-19: Coronavirus Disease 2019
Incubation2-14 days (median 5 days)
Disease spectrumAsymptomatic to severe
SARS-CoV-2 Highly contagious
Human-to-human spread by respiratory droplets
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US COVID-19 Cases, Deaths (as of May 26)
1,662,414cases
98,261deaths
SOURCE: CDC COVID Data Tracker0 - 591776 - 4,085
CASES
4,923 - 9,056
10,846 - 18,491
18,811 - 42,32346,944 - 356,179
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Symptoms of COVID-19
Clinical Assessment*Cough, shortness of breath, fever,
chills, headache, sore throat, muscle pain, loss of taste or smell
*Not all inclusive
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Why Testing is Necessary
“Clinical assessment alone is not accurate in predicting COVID-19 diagnosis.”
— Infectious Disease Society of America Guidelines on the Diagnosis of COVID-19, May 2020
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COVID 19Exposure
Symptom Onset
Weeks -2 -1 1 2 3 4 5 6
Incr
easi
ng
pro
ba
bilit
y o
f de
tect
ion
Likely infectious
Viral RNA
Antibodies
COVID-19 Progression: Viral markers
Modified from Sethuraman et al. JAMA May 6
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COVID-19 Molecular Test: Its Purpose
Diagnose acute infection by detecting viral RNA fragment
Virus may be viable or not viable
SARS-CoV-2 RNASARS-CoV-2
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COVID-19 Molecular Test : From start-to-finish
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COVID-19Test
Test Results
RNA isolated
RNA amplified
RNA detection
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Molecular diagnosticexpertise High-
complexity clinical laboratory
Financial resources & experienced staff
Reagents and Samples
Test optimization &
implementation
Developing Molecular Test: A Complex Process
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Analytical Specificity
Ability to only detect the virus
Analytical Sensitivity
Ability to detect the virus
1,000-fold difference 99-100%
63 vendors and 28 laboratories with approved tests
COVID-19 Molecular Tests: Performance
SOURCE: FDA COVID-19 EUA Information
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Initial Negative Test? When and why repeat
Intermediate to high clinical suspicion Repeat 24-48 hours
Low clinical suspicion No re-testing
Infectious Disease Society of America Guidelines on the Diagnosis of COVID-19
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COVID-19 Molecular Testing: Recap
UtilityAcute infection diagnosis
through detection of viral RNA
DevelopmentRequires significant expertise
and investment
InterpretationClinical and laboratory guidance for optimal results interpretation
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COVID-19 Diagnostics
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Q U E S T I O N S