concept-based image retrieval: the arrs goldminer ® image search engine charles e. kahn jr., md, ms...

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Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin, USA

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Page 1: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Concept-based Image Retrieval: The ARRS GoldMiner® Image Search Engine

Concept-based Image Retrieval: The ARRS GoldMiner® Image Search Engine

Charles E. Kahn Jr., MD, MS

Medical College of WisconsinMilwaukee, Wisconsin, USA

Page 2: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Disclosure

No commercial interests

American Roentgen Ray Society (ARRS) Executive Council member

(Publications) Consulting stipend

Page 3: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Google® Imagescirca 2006

Page 4: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

ARRS GoldMiner®

Image search engine “Open access” images Built by and for radiologists Powered by a major radiology

organization Available freely to all

Page 5: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

goldminer.arrs.orggoldminer.arrs.org

Page 6: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Overview

ARRS GoldMiner®

How it works Get the most for your search

New features Advanced search Spell check GoldMiner Global

What’s on the horizon

Page 7: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Search term

Page 8: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Click on the thumbnailto view the full-size original image

Click on the titleto link to the original article

Page 9: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Dynamically filter results by age, sex,

and imaging modality

Page 10: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

ARRS GoldMiner®

Image search engine Radiology images Peer-reviewed journals

Combines search strategies Keywords (text strings) Medical concepts

Filters search results Age, sex, and imaging modality

Page 11: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Concept-based Search

Semantic knowledge Lexical variants

“oesophagus” = “esophagus” = “esophageal”

Abbreviations “HCC” = “hepatocellular carcinoma”

Synonyms “renal calculi” = “kidney stones”

Powered by UMLS® Unified Medical Language System

Page 12: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

“Searching for Meaning”

GoldMiner understands relationships between concepts

Expands queries using UMLS Metathesaurus concept hierarchy

Page 13: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

UMLS Metathesaurus

SNOMED-CT Systematized Nomenclature of Medicine

Foundational Model of Anatomy Medical Subject Headings

MeSH vocabulary Indexes MEDLINE / PubMed

Page 14: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,
Page 15: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,
Page 16: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,
Page 17: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,
Page 18: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Software

Harvester A Web "robot" intelligently crawls journal web

sites to gather figures and their text captions

Indexer Discovers medical concepts in free-text figure

captions Indexes the figures to speed retrieval

Search engine Retrieves images to answer your search query

Page 19: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Image Library

7 core journals including AJR, Radiology, and RadioGraphics

250+ peer-reviewed journals Image collection grows weekly

Page 20: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Outstanding Performance

Fast retrieval Mean = 0.041 sec

Accurate search results High precision and recall (86%+) Image metadata (~85% accuracy)

Age, sex, imaging modality

Page 21: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,
Page 22: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

A “How-To” Guide

Keep it simple ! Use a search term that represents

A disease An imaging finding, or An anatomic feature

Filter your search results Limit images by age group, sex, and/or

imaging modality

Page 23: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

New Features

GoldMiner Spelling corrector Advanced search

Image Gallery GoldMiner Global

10 languages

Page 24: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Spelling Correction

Page 25: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Advanced Search

Combine up to 3 search queries e.g., “Lung metastases” and “colon

cancer”

Limit to core journals Search by age

Age group (“Child”) or specific range

Sex Imaging modalities

Page 26: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,
Page 27: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,
Page 28: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Image Gallery

Instantly add images to a web site All it takes is one line of HTML code!

GoldMiner “inlines” relevant images into web pages based on their content

Page 29: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

GoldMiner inserts up to four relevant images, based on the page’s title and subject

The caption pops up when your mouse hovers over an image; click on the image to view it at full size

GoldMiner® Image Gallery

at the CHORUS web site

(chorus.rad.mcw.edu)

Page 30: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

GoldMiner Global

Multi-lingual search engine

10 other languages

Uses MeSH Medical Subject

Headings

Arabic Chinese French German Italian Japanese Korean Portuguese Russian Spanish

Arabic Chinese French German Italian Japanese Korean Portuguese Russian Spanish

Page 31: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

العربية日本語

Deutsch

Español Русский中文

Português

Italiano

Français

A customized NLM web interface translates the query term into an English-language MeSH term

The ARRS GoldMiner® serversends a translation request; it uses the English-languagequery term to retrieve images.

Users can search for images using search terms in 10 languages other than English.

Page 32: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Searching in Chinese for “Liver Cancer”

Searching in Chinese for “Liver Cancer”

“ ”肝癌

Page 33: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,
Page 34: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

In Development

Content-based image retrieval Imaging modality classifier Find similar images

Point-of-care learning Category 1 CME

Page 35: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Image Modality Classifier

Use visual info to detect modality 95% accuracy

Combine with existing text data

“CT”

Page 36: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

“Visual Search” for Images

Page 37: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Point of care learning “Just-in-time” knowledge

CME credits for clinically directed search

ARRS member benefit

Page 38: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

Point of Care Learning

Learning LogSearch Results

Page 39: Concept-based Image Retrieval: The ARRS GoldMiner ® Image Search Engine Charles E. Kahn Jr., MD, MS Medical College of Wisconsin Milwaukee, Wisconsin,

[email protected]

goldminer.arrs.orggoldminer.arrs.org

Any questions?Any questions?Any questions?Any questions?