comparison of different options for harvest of a therapeutic protein product from high cell density...
TRANSCRIPT
Comparison of Different Options for Harvestof a Therapeutic Protein Product From HighCell Density Yeast Fermentation Broth
Alice Wang,1 Rachael Lewus,2 Anurag S. Rathore1
1Process Development, Amgen, Inc., M/S 30-2-A, One Amgen Center Dr.,Thousand Oaks, California 91320; telephone: 805-447-4491; fax: 805-499-5008;e-mail: [email protected] of Chemical Engineering, University of Virginia, Charlottesville, Virginia
Received 1 June 2005; accepted 22 November 2005
Published online 26 January 2006 in Wiley InterScience (www.interscience.wiley.com). DOI: 10.1002/bit.20816
Abstract: Recovery of therapeutic protein from high celldensity yeast fermentations at commercial scale is achallenging task. In this study, we investigate andcompare three different harvest approaches, namelycentrifugation followed by depth filtration, centrifugationfollowed by filter-aid enhanced depth filtration, andmicrofiltration. This is achieved by presenting a casestudy involving recovery of a therapeutic protein fromPichia pastoris fermentation broth. The focus of this studyis on performance of the depth filtration and the micro-filtration steps. The experimental data has been fitted tothe conventional models for cake filtration to evaluatespecific cake resistance and cake compressibility. In thecase of microfiltration, the experimental data agrees wellwith flux predicted by shear induced diffusionmodel. It isshown that, under optimal conditions, all three optionscan deliver the desired product recovery (>80%), harvesttime (<15 h including sequential concentration/diafiltra-tion step), and clarification (<6 NTU). However, thethree options differ in terms of process developmenttime required, capital cost, consumable cost, ease ofscale-ability and process robustness. It is recommendedthat these be kept under consideration when making afinal decision on a harvesting approach.� 2006 Wiley Periodicals, Inc.
Keywords: depth filtration; filter aid; microfiltration;yeast fermentation; harvest
INTRODUCTION
Harvest of biotechnology products from cell culture or
fermentation process streams is often performed by a
combination of several unit operations. The drivers for the
process design include maximizing product recovery, scale-
ability, robustness, and clarification of process stream while
operating in a physical and chemical environment where the
product is stable. Centrifugation, depth filtration, and
microfiltration are some of the commonly used unit
operations for performing harvest.
Continuous centrifugation has been widely used for
harvest of large-scale cell culture (Berthold and Kempken,
1994; Winter, 2004) and microbial fermentation (Clarkson
et al., 1996; Varga et al., 2001) processes in the biopharma-
ceutical industry. For extracelluar protein product, secondary
clarification using depth filter after centrifugation is normally
required prior to further downstream processing. Recently,
Yavorsky and Mcgee (2002) presented an approach toward
selection and sizing of a depth filtration step for clarification
of cell culture and fermentation broths. A discussion of the
various strategies that can be adoptedwhile designing a depth
filtration step to achieve process compression, improved
yield, lower operating costs, and reduced process footprint
has also been published (Yavorsky et al., 2003).
Use of filter-aids to enhance the capacity of a filtration step
has been proposed in the literature. Heertjes and Zuideveld
(1978a, 1978b) performed depth filtration experiments with
polystyrene particles as model impurity to characterize filter
aids using effective particle diameter and pore diameter in the
filter aid cake. They found that the type of precoat and the
way in which it was formed were very important. They also
observed that electrostatic repulsion played an important role
and that interception and straining were the key mechanisms
of capture in depth filtration. Other applications using filter
aid assisted filtration for recovery of plasmid DNA
(Theodossiou et al., 1997) and of yeast cells (da Matta and
Medronho, 2000) from fermentation broth have also been
published. Reynolds et al. (2003) presented a design for
predicting changes in cake compressibility over time to allow
for accurate estimation of flux profiles that are obtained in
large-scale filtration steps that use filter aids. Literature from
the vendors also provides useful information about the
underlying principles that govern the performance of a filter
aid enhanced depth filtration step (Hurst, 2004).
Perhaps the most common approach that is used for
harvesting product from fermentation broths, in particular
high-density fermentations such as with yeast, is microfiltra-
tion (Tanaka et al., 1992; Zeman and Zydney, 1996). Both,
�2006 Wiley Periodicals, Inc.
Correspondence to: Dr. A.S. Rathore
plate and frame and hollow fiber formats have been shown to
be useful in these applications. Recently published chapters
have reviewed the progress made in this area (Russotti and
Goklen, 2001; Schlegel andMeagher, 2001). Bell andDavies
(1987) presented the several advantages that cross-flow
filtration (CFF) offers for harvesting yeast fermentations over
centrifugation and found that the performance of CFF
depends on several factors including viscosity, concentra-
tion, membrane fouling due to media components, and
influence of osmotic pressure. Patel et al. (1987) have
compared the different filter formats: pleated-sheet micro-
filter, tubularmicrofilter, and hollowfiber ultrafiltration (UF),
in terms of flux and cell yields obtained with CFF of yeast
suspensions. They found that the UFmodule hadmuch lower
fouling rate than the microfilters with the pleated-sheet
microfilter experiencing rapid plugging and significant
cleaning issues. Bailey and Meagher (1997) performed a
similar comparison between the hollow fiber and plate and
frame formats for microfiltration of recombinant E. coli
lysates and found both options to be comparable in
performance under optimized conditions. Sheehan et al.
(1988) compared centrifugation with membrane based
separations of extracellular bacterial protease and found the
membrane process to be twice as cost effective as
centrifugation and equivalent to a precoat filter, on basis of
unit cost of enzyme product recovered. Industrial studies
demonstrating robust operation of tangential flow filtration
(TFF) based harvest of mammalian cell culture (van Reis
et al., 1991) and CFF based harvest of recombinant yeast
product (Russotti et al., 1995) have also been reported. More
fundamental studies investigating the various aspects of
filtration processes such as, mathematical modeling, mem-
brane fouling, and critical flux determination have also been
published in the literature (Belfort et al., 1994; Jacob et al.,
1998; Kwon et al., 2000; Redkar and Davis, 1993).
More recently, operating at constant flux rather than
constant TMP has been proposed for microfiltration applica-
tions. It has been suggested that it is very important to operate
below the critical flux, which is the maximum permeate flux
that the system can sustain before concentration polarization
becomes significant. Once critical flux is reached, the
crossflow can no longer sweep solids from the surface as
quickly as the permeate flow brings the solids to the
membrane surface (Kwon et al., 2000). It has been observed
that severe and often permanent fouling that occurs with
operation under constant TMP due to very high initial
permeate fluxes can be avoided by operating under constant
flux (van Reis and Zydney, 2001). Sheehan et al. (1988)
observed an average flux increase of 2.5 times and protein
transmission of 90% upon using permeate flow control for
recovery of an extracellular protease. Harvest of mammalian
cell culture using constant permeate flux at industrial scale
has been shown to provide an average yield of 99% with the
total cell number and viability maintained throughout the
process (van Reis et al., 1991).
Several efforts had been devoted to overcoming mem-
brane-fouling limitations via improved fluid mechanics
across the membrane. These include use of rotating disk
dynamic filtration to harvest yeast cells (Lee et al., 1995),
vibrating membrane filtration for high cell density yeast
harvest (Postlethwaite et al., 2004), Dean vortex microfiltra-
tion of E. coli inclusion bodies (Schutyser et al., 2002) and
coiled hollow-fiber module for microfiltration of microbial
suspensions (Luque et al., 1999). Periodic backpulsing of the
permeate fluid to the feed for fouling reduction has been
reviewed by Davis (2001)). Although these cutting edge
technologies may provide significant benefits in terms of
sustaining flux and reducing fouling, they have not gained
wide industrial acceptance so far and the large-scale
equipment that would be required to perform these in a
manufacturing environment is not readily available.
In this study, we compare the three different harvest
approaches, as illustrated in Figure 1, namely two-pass
centrifugation followed by depth filtration, single-pass
centrifugation followed by filter-aid enhanced depth filtra-
tion, and microfiltration. This is achieved by presenting a
case study that involves recovery of a therapeutic protein
from Pichia pastoris fermentation broth.
THEORETICAL ASPECTS
Two models have been commonly used for describing
filtration performance in harvest process. These are the
resistance model and shear induced diffusion model. In the
following, we briefly summarize these models as they are
later used for data analysis.
Resistance Model
This model is based on cake filtration theory and can be used
to describe both filter aid assisted depth filtration and
microfiltration (Cheryan, 1998). Filtrate flux (J) can be
Figure 1. Different options for harvest of a therapeutic protein from high
cell density Pichia fermentation.
92 Biotechnology and Bioengineering, Vol. 94, No. 1, May 5, 2006
DOI 10.1002/bit
expressed by Darcy’s law
J ¼ DPmðRm þ Rf þ RcÞ ð1Þ
In Equation 1, DP is the driving force, Rm is the intrinsic
membrane resistance that can be determined by clear water
flux. Rf accounts for internal fouling of membrane pores and
Rc is the resistance from concentration polarization and cake
formation due to deposition of particulates on the membrane
surface. Internal fouling is generally assumed related to
physicochemical interactions and relatively unaffected by
operating parameters and is frequently lumped with Rm as
R0m, where R
0m ¼ Rm þ Rf (Cheryan, 1998). Cake resistance
Rc is a function of the permeability, thickness, and
compressibility of cake layer. Assuming homogeneous cake
layer, Rc can be expressed as
Rc ¼ rc � r� dc ð2Þwhere dc and r are the cake thickness and density. The
specific cake resistance, rc, is related to pressure drop as
follows (Perry and Green, 1984)
rc ¼ r0c � DPk ð3Þwhere, r0c is a constant that depends on the cake porosity anddiameter of the particles that form the cake, k is the cake
compressibility that varies from 0 for rigid, incompressible
cakes to 1 for highly compressible cakes.
In the case of constant flow cake filtration, cake thickness,
dc, is related to filtrationvolume (V), filter area (A), and solids
content (Cp) in the feed by the following mass balance
expression
dc ¼ Cp
rV
Að4Þ
For constant flow cake filtration, Equations 1–4 can be
combined as
J ¼ DPm R0
m þ r0cCpVADPk
� � ð5Þ
Typically, R0m is negligible compared to the cake resistance
and so Equation 5 can be simplified as
V
A¼ 1
mr0cCpJDP1�k ð6Þ
Equation 6 indicates that filtration throughput (V/A) is
proportional to (1�k)th power of differential pressure and
inversely proportional to fluid viscosity (m), solids
contents (Cp), cake resistance constant (r0c), and filtrate
flux (J). Increase in filtration throughput can be achieved
by reducing solids contents, cake resistance, cake compres-
sibility, flow rate, or by increasing maximum allowed
differential pressure.
For filter aid assisted filtration, Rm became the sum of
membrane resistance and precoat resistance, rc is the
combined specific resistance from the mixture of filter aid
and original solids in the feed, Cp is the total mass of
filter aid and original solids in the suspension, and k is
the combined compressibility of filter aid and original
solids.
In the case of microfiltration, DP is the transmembrane
pressure and is defined as:
TMP ¼ Pfeed þ Pretentate
2� Ppermeate ð7Þ
Equation 1 can then be expressed as follows for micro-
filtration
J ¼ TMP
mðRm þ Rf þ RcÞ ð8Þ
Shear Induced Diffusion Model
This model applies to the microfiltration system. It correlates
permeate flux to shear rate, concentration and particle size of
the feed material, filtration channel length, and viscosity.
Belfort et al. (1994) have reviewed Brownian diffusion,
inertial lift model and shear-induced diffusion model,
specifically as they apply to microfiltration. They concluded
that for open channel module operated at laminar flow
(Reynolds number, Re <2,000), Brownian diffusion is the
dominant mechanism for particles with diameter <0.1 mm,
shear induced diffusion is dominant for particles with
diameter between 1 and 10 mm and inertial lift model
becomes dominant for particles larger than 100 mm.
Reynolds number is defined as
Re ¼ rvdhms
ð9Þ
where dh, the hydraulic diameter, is equal to tube
diameter (d), or channel height (b) and ms is the suspensionviscosity.
For our case, shear induced diffusion model is expected to
be the dominant mechanism because Pichia cells are in
micron range. Zydney and Colton (1986) have proposed that
the filtrate flux during crossflow microfiltration in an open
channel can be described as
J ¼ 0:078r4sL
� �1=3
gw lnfw
fb
� �ð10Þ
where, L is the channel length, gw is the wall shear rate, fw,
and fb are particle volume fraction at membrane surface and
bulk solution, respectively. Further, fw is assumed to be
close-packed particle concentration and ranges from 0.6 for
rigid particles and 0.8–0.9 for deformable particles. Shear
rate at membrane surface is related to bulk average linear
velocity (v) and channel dimensions as expressed in the
following equation (Cheryan, 1998).
Wang et al.: Harvest of a Therapeutic Protein Product 93
Biotechnology and Bioengineering. DOI 10.1002/bit
For tube of diameter d,
gw ¼ 8v
dð11Þ
For a slit of height b,
gw ¼ 6v
bð12Þ
Estimation of Yield in Diafiltration
Product recovery of microfiltration process is dependent on
number of diafiltration volumes (DV) and protein sieving
coefficient (S), and can be expressed as follows:
Y ¼ 1� e�DV�S ð13Þwhere, the protein sieving coefficient is defined as
S ¼ Cpermeate
Cretentate
ð14Þ
where, Cpermeate and Cretentate are the product concentrations
in the permeate and retentate side.
MATERIALS AND METHODS
Preparation of Feed Material
The yeast fermentation process consisted of seed vial thaw,
inoculum development and production fermentation stages.
The seed vial was thawed and used to inoculate a 2 L baffled
shake flask. After 30 h growth in the shake flask stage, cells
were then transferred into a 500 L fermentor containing
specially formulated growth medium. The fermentation
process went through batch growth, fed-batch growth,
adaptation, and production stages, and reached final target
protein titer, and �50% (v/v) packed wet cells. Operating
conditions were similar to what have been widely reported in
literature forPichia (Byrne et al., 2000 andLi et al., 2003). At
the end of fermentation, aliquots were transferred into
Carboys and stored at 48C with agitation for microfiltration
experiment. The remaining of broth was chilled and agitation
was lowered to 200 rpm. The cell broth was then diluted and
centrifuged using a Westfalia CSA-8 continuous disk stack
centrifuge. As shown in Figure 1, double pass centrate
containing 0%–1% solids was used as feed material in
depth filtration experiments and single pass centrate with
1%–7% solids was used for filter aid assisted depth filtration
runs. Several fermentation lots were used to perform
experiments presented in this study. However, based on
our evaluation of the robustness of the fermentation process
(data not presented here), the lot-to-lot variation is not
expected to cause significant impact on the performance of
harvest steps.
Depth Filter, Filter Aid, and MicrofiltrationMembranes
Depth filter K150 (Cat#SC060X150), EKSP (Cat#SC060-
PEKS), SUPRAEK1P (Cat#SC060PEK1), and SUPRA80 P
(Cat#SC060P080) were purchased from Pall Corporation
(East Hills, New York). Depth filter CUNO 10 SP
(Cat#BC0030A10SP), 90 SP (Cat#BC0030A90SP), 30M03
(Cat#BC0030A30M03), 90M08 (Cat#BC0030A90M08),
and 120M08 (Cat#BC0030A120M08) were purchased from
CUNO Incorporated (Meriden, CT). MillstakþA1HC
(Cat#MA1HC23HH3) and B1HC (Cat#MB1HC23HH3)
were purchased fromMillipore (Bedford, MA). Descriptions
of pore size and filter media of these depth filters have been
summarized in Table IA.
Four grades of filter aid, Celpure P65 (Cat#52523-5),
P100 (Cat#52626-6), P300 (Cat#52524-3), and P1000
(Cat#52522-7) were purchased from Sigma-Aldrich (St.
Louis, MO). Celpure 65 has the smallest particles size while
Celpure 1000 is the largest. The permeability and particle
retention properties are listed in Table IB.
Table IA. Properties of depth filters evaluated*.
Vendor Filter Pore size Description
Millipore MillistakþA1HC 0.1–0.4 mm (DE65)/<0.1mm (DE75) Two layers of inorganic filter aid (DE) and 0.1 mm nominal
cellulosic membrane (RW01)
Millipore MillistakþB1HC 0.2–0.7 mm (DE50)/<0.1 mm (DE75) Single layer of pharmaceutical grade media
CUNO 10SP 0.8–4 mmCUNO 90SP 0.2–0.65 mmCUNO 30M03 0.8–4 mm(10SP)/0.6–2 mm (30SP) Dual-zone construction, high contaminant holding capacity
CUNO 90M08 0.45–0.8 mm (60SP)/0.2–0.65 mm (90SP)
CUNO 120M08 0.45–0.8 mm (60SP)/0.1–0.45 mm (120SP)
Pall
Pall
Pall
Pall
SupraEK1P
EKSP
Supra 80P
K150
0.2–4 mm0.1–0.3 mm1–3 mm2.5–4 mm
P series depth filter, combination of cellulose fibers, DE and
perlite, pyrogen removal capability.
K series depth filter, combination of cellulose fibers, DE and
perlite.
*Information available from vendor literature.
94 Biotechnology and Bioengineering, Vol. 94, No. 1, May 5, 2006
DOI 10.1002/bit
Hydrosart microfiltration membrane (Cat#305-186-07W-
SG) was obtained from Sartorius (Goettingen, Germany),
0.2 mm Supor with suspended screen (Cat#PSM20C11)
from Pall (East Hills, New York), Pellicon II with v screen
(Cat#P2GVPPV01) and Prostak (Cat#PSGVAG021) from
Millipore and hollow fiber cartridge (Cat#CFP-1-E-5A)
from GE healthcare (Piscataway, NJ). Properties of these
microfiltration membranes are listed in Table IC.
Depth Filtration Method
Constant flow filtration (also called Pmax study) was utilized.
Filtration volume, differential pressure, and filtrate turbidity
were recorded at different time intervals until differential
pressure of 30 psiwas reached. In the case offilter aid assisted
filtration, the filter pad was first precoated with 3 mm same
grade of Celpure media (0.1 g/cm2 surface area). The desired
amount of filter aid (also called body feed) was added and
suspended in feedstock. The body-fed feedstock was then
filtered at a constant flow rate of 250–350 LMH until either
the pressure was �30 psig, or the filter assembly no longer
had any headspace available to accommodate further
increase in cake thickness. The cake height was measured
using a graduated scale.
Microfiltration Method
The protein of interest is known to be stable in post-
production broth at room temperature. Therefore, during
microfiltration process, the retentate tank was maintained at
room temperature (22–258C) to reduce fluid viscosity and
maximize flux. The permeate pool was chilled to 2–88C to
minimize product degradation. Depending on the required
circulation flow rate, a peristaltic pump (Masterflex HV-
77963-10) or a diaphragm pump (Quattroflow 4000S) was
used to circulate fermentation broth. Operating under
constant permeate flux instead of constant TMP has been
recommended for microfiltration application involving
excessive membrane fouling (van Reis and Zydney, 2001).
A bench scale peristaltic pump was used to control permeate
flux. The feed was first circulated in the system for a few
minutes with the permeate line closed. Then backpressure
was applied by closing the retentate valve, and the permeate
pump was started at the desired flow rate. Permeate was
pooled for every 0.5 diafiltration volume (DV) up to 2 DV.
Permeate and retentate samples at the same processing time
were also taken to evaluate protein transmission.
To measure critical flux at a given crossflow rate, the
systemwas set up in total recyclemode, and the permeate flux
was increased in increments. With each incremental step in
flux, the systemwas allowed to equilibrate. Pressure and flow
readings were noted at the beginning and at the end of the
stabilization period. Typically, as permeate flux increased,
TMP also increased and then stabilized. TMP continued to
increase in a stepwise fashion until critical flux was reached
and beyond this the TMP continues to rise without
stabilizing. After each microfiltration run, membranes were
regenerated and sanitized by sequential recirculation of a
cleaning solution per vendor suggested methods.
Analytical Assays
Solids content (v/v %) in fermentation broth as well as
filtration feed material was determined by processing the
samplewith aBeckman J2-HS centrifuge. If no pellet resulted
upon centrifugation, the samplewas designated as containing
0% solids. Particle size of Pichia cells was measured by
Malvern laser light diffraction system. Filtrate/permeate
turbidity was measured using Hach1 portable turbidity
meter. Protein concentration in the feed and filtrate were
analyzed by SDS–PAGE using 4%–20% Tris-Glycine gel
from Invitrogen (Cat# EC6025). The gels were stained using
Coomassie blue and imaged with a scanning laser densit-
ometer (BioRad Model GS800). The band intensity was
quantified byQuantity One imaging software (Version 4.2.1).
RESULTS AND DISCUSSION
Depth Filtration (Option 1A)
Evaluation of the filtration performanceswas performedwith
respect to filter capacity, filtrate quality as determined by
Table IB. Properties of filter aids evaluated*.
Celpure
grade
Permeability
(mDarcy)
Surface area
(m2/g)
99% Retention
(mm)
65 40–80 6–7 >0.2
100 70–140 5–6 >0.3
300 150–300 3–4 >0.45
1000 750–1250 1–2 >1.0
*Information available from vendor literature (Hurst, 2004).
Table IC. Properties of microfiltration membranes evaluated*.
Vendor Format Pore size (mm) Material Surface area (m2)
Sartorius Cassette/open channel 0.45 Reg. cellulose 0.1
Pall Cassette/suspended screen 0.2 PES 0.1
Millipore Pellicon II/V screen 0.2 PVDF 0.1
Millipore Prostak/open channel 0.2 PVDF 0.17
GE Hollow fiber, 1 mm lumen, 30 cm 0.1 PS 0.12
*Information available from vendor literature.
Wang et al.: Harvest of a Therapeutic Protein Product 95
Biotechnology and Bioengineering. DOI 10.1002/bit
filtrate turbidity, targeted protein recovery, and robustness
regarding variation in feed characteristics. Ten different
filters from Pall, Millipore and CUNO were examined for
their performance in this application (Rathore et al., 2004). In
order to have a robust process with respect to feed
characteristics % solids and feed turbidity, feeds with 0%
solids and 0.7% solids were used for filter screening. The
differential pressure versus normalized throughput at differ-
ent time intervals for each depth filter was plotted and
compared. As listed in Table II, most filters exhibit good
capacity with feed containing 0% solids. However, filtration
capacity is significantly lower with feed containing 0.7%
solids except forMilliporeMillistakA1HC andB1HCfilters,
which consist of an open diatomaceous earth (DE) layer,
tighter DE layer and a 0.1 mm cellulosic membrane. The
recovery for all the experiments is found to be between 80%
and 95%. With feed containing 0.7% solids, the filtrate pool
turbidity is�3 nephelometric turbidity units (NTU). For feed
with 0% solids and at differential pressure of 30 psi, turbidity
breakthrough (a sudden and sharp increase in filtrate
turbidity) is observed and pool turbidity is measured to be
8NTU forMillistak A1HC, 11NTU forMillistak B1HC, and
10–15 NTU for all other cases. Filter screening results
indicate that the A1HC and B1HC filters yield high capacity
and lowfiltrate turbiditywith respect to variation in feedstock
characteristics.
As shown inTable II, A1HCfilter has a higher capacity than
the B1HC filter with 0% solids feed, but a lower capacity with
0.7%solids feed.We believe this is due to the different particle
size distribution of the two feeds; with the 0% solids feed
containing smaller particles that lead to a faster pluggingof the
B1HC filter, which is structurally more open in comparison to
the A1HC. Also, while no turbidity breakthrough is observed
with 1% solids feed, breakthrough occurred earlier with the
0% solids feed for the B1HC filter thanwith the A1HC. Based
on these results, Millistak A1HC was chosen due to its
superior filter capacity and lower filtrate turbidity.
To ensure robust operation at large scale, the effects of key
operating parameters on the performance of this unit
operation were evaluated. These parameters include% solids
in the feed, lot-to-lot variation in feed, batch-to-batch
variation in filters, scale of operation (bench, pilot, and
production scales), filtration flow, temperature, and feed hold
time. In Figure 2, three lots ofA1HC depth are compared side
by side using same feed material. Lot A outperformed the
control run (lot B) with respect to throughput, indicating that
A1HC filter capacity may vary from lot-to-lot and an
appropriate safety factor should be applied for large scale
production. At pilot scale, the step was performed with an 8
cell 1600 A1HC with 1.8 m2 membrane area to process 300 L
fermentation broth. Comparable performancewith respect to
product recovery, filter capacity and filtrate turbidity is
observed between two scales, as illustrated in Figure 3.
Breakthrough in pressure and turbidity is seen at bench scale.
However, for pilot scale, this was outside the operating
conditions evaluated.
The harvest process using Millistak A1HC provides high
product recovery (95%) and low turbidity filtrate (<3 NTU).
However, depth filters such as Millistak A1HC are designed
for secondary clarification purpose. They remove fine
particles by capturing them within the depth of the filter.
When the % solids in the feedstock is too high, most of
particles are retained on the surface of depth filter to form an
impermeable cake and result in filter clogging. Data plotted
in Figure 4 shows that the capacity of MillistakþA1HC
decreases dramatically with increasing solids content in the
feed. This observation is consistent with Equation 6 that
states that the filtration capacity is inversely proportional to
feed particle concentration. Thus, it can be postulated that if
the centrifugation step underperforms and yields centrate
Table II. Comparison of throughput for different depth filters (L/m2 at
15 psi). Filtration experiments were performed at flow rate of 250 LMH and
48C.
Filter train Feed w/0% solids Feed w/0.7% solids
CUNO
90SP 268
120M08 133 62.5
10SPþ 90SP 42.5
30M08þ 120M08 71.4
30M08þ 90M08 89.3
Millipore
A1HC 260 137
B1HC 174 160
Pall
SupraEK1P 161.5 69.2
Supra80PþEK1P 54.8
K150þEK1P 115
Figure 2. Effect of lot to lot variation inMillistak A1HC filters. Three lots
of A1HC depth filter in the format of Minicap (23 cm2) were compared side
by side using same lot of feed material at flow of 250 LMH, 48C. Feedcontained 0.55% solids. [Color figure can be seen in the online version of this
article, available at www.interscience.wiley.com.]
96 Biotechnology and Bioengineering, Vol. 94, No. 1, May 5, 2006
DOI 10.1002/bit
with higher % solids (>1%); the filter area required for the
depth filtration step will increase significantly.
Filter Aid Enhanced Depth Filtration (Option 1B)
In order to gain manufacturing flexibility with respect to
variation in% solids in feed, filter aid assisted depth filtration
was explored as the second process option. Filter aid is made
of rigid and porous diatomaceous earth. With addition of
filter aid, the diatomite deposits alongside with the
compressible solids throughout filtration, resulting in a
permeable and incompressible cake layer (Hurst, 2004). In
the following, we describe optimization of operating
conditions for this option.
Celpure Grade Selection
Four grades of Celpure materials with different particle sizes
were compared side-by-side in order to select the most
suitable filter aid. Small sized filter aids generate small pores
when accumulated as a cake and are able to retain small sized
particulate. Therefore, high cake resistance (Rc) is expected.
On the other hand, coarse filter aids are not able to retain
small sized particulate, resulting in low cake resistance (Rc)
and high filtrate turbidity. The goal of filter aid screening is to
identify a filter aid that generates the lowest cake resistance
(Rc), as well as, low filtrate turbidity (<10 NTU) for our
application. As shown in Figure 5, all the filter aids
performed in a comparable fashion with respect to filtration
capacity. Celpure 65 is the filter aid with the smallest particle
size and generates the highest resistance during the entire
filtration. Celpure 300 and Celpure 1000 have lower
Figure 4. Effect of % solids in the feed on filtration capacity of Millipore
A1HC filter. [Color figure can be seen in the online version of this article,
available at www.interscience.wiley.com.]
Figure 5. Differential pressure versus filtrate volume with four different
filter aids at lab scale. The filter pad was first precoated with 3 mm Celpure
Media (0.1 g/cm2 surface area), followed by addition of 30 g/L body feed to
feedstock containing 7% solids. The suspensions were filtered at flow rate of
350 LMH and 48C. [Color figure can be seen in the online version of this
article, available at www.interscience.wiley.com.]
Figure 3. Scale-up ofA1HCdepth filtration step to pilot plant.Mini disk (23 cm2)was used at lab scale and 8 cells, 1600 diameter cartridge (1.8m2)was used in
pilot plant. Filtrationwas performed at flow rate of 250LMHand feed contains 0% solids. [Color figure can be seen in the onlineversion of this article, available
at www.interscience.wiley.com.]
Wang et al.: Harvest of a Therapeutic Protein Product 97
Biotechnology and Bioengineering. DOI 10.1002/bit
resistance in the early stage of filtration due to their large
particle sizes. However, the cake layers are too open to
capture the fine particles in the feedstock, which results in
filter pad clogging and higher resistance in the later stage of
filtration. Filtrate turbidity was 5.8, 6.8, and 10.5 NTU for
Celpure 100, 300, and 1000 respectively. Since the product
does not bind with Celpure media, product recovery with all
four Celpure grades was between 90% and 100%. Celpure
100 was selected for the remaining experiments as it yielded
the targeted turbidity and highest capacity.
Celpure 100 Concentration
Cake permeability depends on the concentration of filter aid
added. Lower amount of filter aid produces a cake in which
cells and cell debris are not well dispersed and cake is still
compressible and impermeable. Too much filter aid will lead
to formation of a permeable but thicker cake. The thickness
of the cake, as discussed later, negatively impacts the filter
area available in a cartridge. Different amounts of Celpure
100 were added to filtration feed in order to identify
the optimal concentration. Figure 6 illustrates a plot of
differential pressure versus throughput at different concen-
tration of filter aid. It appears that due to high amount of %
solids in the feed material (7%), the filter clogs immediately
without filter aid. Addition of Celpure 100 dramatically
improves the filtration capacity and the capacity increases
with the filter aid concentration. The resistance parameter of
Pichia pastoris cell was measured and is listed in Table III.
Experimental results at different Celpure 100 concentrations
were fitted with the resistance model (Eq. 6) and the values
for cake resistance and compressibility were estimated. As is
evident fromTable III, these estimated values are comparable
to those reported in the literature. Addition of filter aids in the
filtration process increases particle concentration (Cp), but
significantly reduces cake specific cake resistance (rc) and
cake compressibility (k), thus improving filtration through-
put.
Capacities (L of filtrate/m2 of filter area) at a differential
pressure of 30 psig for different% solids and Celpure amount
are summarized in Figure 7 with an error bar of þ/� one
standard deviation. As shown in Figure 7A, the addition of
Celpure 100 dramatically increases filtration capacity in
terms of filtrate volume per filter area, for example, for
feedstock containing 2% solids, addition of 15 g/L Celpure
100 increases filter capacity seven times from75 to 525L/m2.
However, as illustrated in Figure 7B, the filter cake height
also increases significantlywith increasing filter aid addition.
This results in need of an increased spacing between filter
layers and a dramatic decrease in the total available filter
surface area per housing with increasing amount of filter
aid addition. As shown in Figure 8, while the overall
filtration capacity per filter housing is improved by 1.5–
2 times, the volumetric flow rate per housing is substantially
reduced.
In summary, it is evident that addition of filter aid
significantly improves filter capacity (volume of filtrate/filter
surface area) while maintains high product recovery (>90%)
and low filtrate turbidity (<6 NTU). However, special filter
design with increased spacing between each filter layer is
required. The reduced packing density of filters offsets the
Figure 6. Effect of filter aid concentration on filtration performance.
Experimental conditions same asFigure 5 unless indicatedotherwise.Different
amounts of Celpure 100were added to feedstock containing 7% solids to reach
different concentrations (0, 18, 30, and 54 g/L). Data points are experimental
observations and lines are theoretical predictions based on Equation 6.
Table III. Comparison of resistance parameters with those reported in the literature and effect of Celpure 100 concentration on cake characteristics.
Baker’s yeast* P. Pastoris
P. Pastoris w Celpure 100
18 g/L 30 g/L 54 g/L
Resistance constant r0c (108) 9.49 3.92 6.3 11.3 9.7
Compressibility, k 0.7 0.75 0.442 0.32 0.25
Specific resistance at 100 kPa, rc (1012 m/kg) 3 2.2 0.102 0.045 0.017
Parameters, r0c and k are calculated basedon curve-fitting ofEquation6with experimental data and rc is calculatedby usingEquation 3.Viscosity offiltrate isassumed to be 0.00135 Pa � s at 48C.
*Data from Shimizu et al. (1993).
98 Biotechnology and Bioengineering, Vol. 94, No. 1, May 5, 2006
DOI 10.1002/bit
benefit of higher capacity of filter aid process. Furthermore,
there are other operational issues associated with handling of
the powder material in the manufacturing plant, as well as,
possibility of precipitation of filter aid in the filtration skid.
Microfiltration (Option 2)
Membrane Screening
Under permeate control mode, flux is maintained constant,
and the TMP is allowed to vary accordingly (Sheehan et al.,
1988). An examination of Equation 8 suggests that an
increase in TMP indicates higher resistance generated during
microfiltration due to higher cake resistance (higher Rc),
membrane pore plugging (higherRf) or a combination of both
mechanisms.
As mentioned earlier, the initial solids content in the
fermentation broth is about 50%. The undiluted fermentation
broth was processed using a microfiltration step and two
diafiltration volumes were performed at constant retentate
volume. Five membranes were operated under manufacturer
suggested crossflow and the permeate flux was controlled at
30–50 LMH. TMP for the Hydrosart membrane increased to
48 psi in 10 min and for Supor 0.2 mm membrane from 7 to
26 psi, indicating unstable processes. Millipore Prostak,
Pellicon II and GE-hollow fiber membranes yielded
acceptable performance under vendor suggested operating
conditions. Permeate turbidity was 2–3 NTU for all three
cases. After the microfiltration step was complete, all
membranes were flushed and regenerated using vendor
suggested cleaning agents and regimes, and NCWP recovery
of 50%–70% was obtained. Based on the screening results,
Millipore Prostak, Pellicon II and GE-hollow fiber were
selected for further investigation.
Optimization of Process Parameters
Figure 9A shows the determination of critical flux for Prostak
when processing feed with �50% solids at room tempera-
ture. At crossflow of 2.5 L/min/channel, the TMP increases
Figure 7. Dependence of filtration capacity (A) and cake height (B) on Celpure 100 concentration. Duplicate runs were performed for feed with 2%
and 3% solids. Error bar shows one standard deviation. Capacity and cake height were determined at flow rate of 350LMHand amaximumdifferential pressure
of 30 psi.
Figure 8. Effect of filter aid concentration on volumetric flowrate (A) and capacity per housing (B) at a maximum differential pressure of 30 psi with a
Millipore HC68 housing with 84.2500 height and 1800 diameter. [Color figure can be seen in the online version of this article, available at
www.interscience.wiley.com.]
Wang et al.: Harvest of a Therapeutic Protein Product 99
Biotechnology and Bioengineering. DOI 10.1002/bit
exponentially when permeate flux reaches 25–30 LMH,
indicating the critical flux is 25 LMH. The critical flux at
crossflow of 8 L/min/channel increases to 45 LMH.
Critical flux during microfiltration is strongly dependent
on particle size and process parameter. For particles over
1 mm, the shear-induced diffusion lifts particles away from
the membrane surface (Bacchin et al., 1995). Under
our microfiltration operating conditions, the calculated
Reynold’s number is 150 at highest cross-flow rate, and
therefore laminar flow in the Prostak channel is expected
(Re <2,000). Since Prostak channel dimensions are known
and Pichia cell mean diameter was measured to be 2.8 mm,
the permeate flux can be calculated using shear-induced
diffusion model as expressed in Equation 10. It was not
possible to estimate cake thickness using resistancemodel, as
Rf is unknown and is expected to be significant due to the high
concentration of the Pichia feedstock. Assuming a cake
thickness of 0–0.1 mm, for effective channel height of 0.4
and 0.5 mm, flux and shear rate were calculated using
Equations 10 and 12 and presented in Figure 9B. It is seen that
the critical flux increases with cross-flow rate and then
saturates out. At low cross-flow rates the data suggests a
linear increase and is bracketed by the two theoretical lines.
However, as the cross-flow rate increases to 8 L/min/channel,
the critical flux enters a non-linear regime that is no more
defined by the model.
TMP and permeate flux are plotted as a function of process
volume for the three membranes in Figure 10. Once the
critical flux was identified, the membrane was operated at
80%–90% of critical flux and 2 diafiltration volumes were
performed at a loading of 100 L fermentation broth per m2
membrane area. Very stable TMP was observed during the
entire microfiltration step and permeate turbidity was �2
NTU for all three cases. Hollow fiber had the highest flux of
Figure 9. Determination of critical flux for Millipore Prostak (A) and comparison of experimental data with theoretical predictions from shear-induced
diffusion model at different crossflow rates (B). Prostak channel dimension: Length of 0.389 m, width of 0.198 m, and height of 0.5 mm. Pichia particle rs of
1.4mmwasmeasured byMalvern Laser LightDiffraction, volume fraction in the bulk stream,fb ismeasured to be 0.457, volume fraction atmembrane surface,
fw is assumed to be 0.85. Effective channel height was assumed to be 0.4 or 0.5 mm. [Color figure can be seen in the online version of this article, available at
www.interscience.wiley.com.]
Figure 10. TMP (*) and flux (&) during harvest of target protein by 2� diafiltration at constant retentate volume. Feed stream contains 46% solids.
Membrane loading is 100 L fermentation/m2membrane surface area. Crossflow for Pellicon II: 22 L/min/m2, Hollow fiber: 33 L/min/m2, and Prostak: 8 L/min/
channel. [Color figure can be seen in the online version of this article, available at www.interscience.wiley.com.]
100 Biotechnology and Bioengineering, Vol. 94, No. 1, May 5, 2006
DOI 10.1002/bit
55 LMH among three membranes. Pellicon II membranewas
not studied further as it yielded the lowest flux. Table IV
shows a comparison of permeate flux obtained in this
process with that in other yeast fermentation harvest
processes reported in the literature. It must be cautioned
that the quoted studies were done with a variety of feed
materials and experimental setups. However, it can be con-
cluded that performing microfiltration under permeate
control condition leads to a steady-state flux that is com-
parable to what has been reported with vibrating membrane
filtration (VMF) and much higher than with TMP controlled
processes.
Estimation of Step Yield
Target protein concentration in feed, permeate pools (every
0.5 DV), and final retentate were analyzed by SDS–PAGE
and densitometry techniques. As shown in Figures 11A and
B, the feed (lane 2) has the highest product concentration and
the product is washed out in the permeate (lanes 3–6) during
diafiltration with only a small amount remaining in the
retentate at the end of diafiltration (lane 7). Protein
transmission factor (sieving) is calculated to be 0.7 for both
membranes by comparing permeate and retentate protein
concentration (lanes 8 and 9). This protein transmission
factor is similar to that observed by Postlethwaite et al.
(2004) using vibrating membrane filtration at yeast concen-
tration of 500 g/L. We obtained 100% mass balance and
92.2% recovery after 2DVwith the hollowfiber cartridge and
111% mass balance and 93.5% recovery with the Prostak
membrane.
Equation 13 was used to calculate the microfiltration yield
from sieving coefficient and number of diavolumes. It should
be clarified that since the solids content is up to 50% in the
feed material, 1.5 DVand 2 DVare actually 3 DVand 4 DV
based on liquid volume. As illustrated in Figure 12,
experimental yield (calculated by total protein mass in the
permeate pool vs. that in the feed) matches very well with
theoretical yield calculated using Equation 13. Data in
Figure 12 indicates that the harvest process can be performed
with two options, 1.5 DV for 86% yield and shorter run time
or 2 DV for 92% yield and longer processing time.
Comparison of Different Harvest Approaches
Calculations were performed for linear scale-up for proces-
sing of 3,000 L fermentation broth using the different options
while keeping the filter or membrane loading as constant. For
microfiltration, several Prostak membranes or hollow fiber
cartridges were set-up in series to reduce total pumping
requirement. Permeate streams were controlled individually
using separate permeate pumps. Using this set-up, the
permeate pressure of upstream cartridge was higher than
downstream cartridge, but the TMPs across each cartridge
Table IV. Comparison of steady state flux for various yeast harvest processes.
Yeast concentration (g/L) Process conditions/scale Steady state flux (LMH) Reference
6 Constant TMP, pilot 20 Russotti et al. (1995)
30 Constant TMP, lab 15–25 Redkar and Davis (1993)
500 VMF*, lab 30–45 Postlethwaite et al. (2004)
450 Constant flux, lab 40–55 Our work
*VMF, vibrating membrane filtration.
Figure 11. Determination of protein concentration by SDS–PAGE for Hollow fiber (A) and Prostak (B) membranes. Lane 1: protein standard, lane 2: feed,
lane 3: permeate pool (0–0.5 DV), lane 4: permeate pool (0.5–1 DV), lane 5: permeate pool (1–1.5 DV), lane 6: permeate pool (1.5–2.0 DV), lane 7: final
retentate, lane 8: permeate at 1 DV, and lane 9: retentate at 1 DV.
Wang et al.: Harvest of a Therapeutic Protein Product 101
Biotechnology and Bioengineering. DOI 10.1002/bit
wasmaintained to be the same. The comparison of these three
options is shown in Table V. The final pool volume is slightly
higher for the microfiltration step, which results in a longer
processing time of the following ultrafiltration/diafiltration
(UF/DF) step, but this effect is counterbalanced by the lower
processing time of the microfiltration step itself when
compared to that of the centrifugation and depth filtration
steps. Further, the microfiltration step offers the highest
product recovery. The pool turbidity is quite comparable for
all three options. The capital cost for Options 1A and 1B is
high, primarily due to the cost of the centrifuge. However,
due to the higher cost of the microfiltration membranes as
compared to the depth filters, the cost of consumables is
higher for Option 2. This would necessitate development and
validation of effective cleaning and sanitization methods to
allow for reuse of the membranes and result in higher
validation costs for Option 2. Finally, while scale-up of
microfiltration and depth filter steps is relatively simple to
perform (linear scale-up), scaling up of a centrifugation step
for high cell-density fermentation broth is more complex.
The overall comparison suggests that while all three
approaches are feasible, the optimal solution will depend
on the application under consideration.
CONCLUSIONS
In this study, we investigate and compare three different
harvest approaches, namely double pass centrifugation
followed by depth filtration, single pass centrifugation
followed by filter-aid enhanced depth filtration, and micro-
filtration. Based on the data presented here, it can be
concluded that under optimal conditions, all three options
can deliver the desired product recovery (>80%), harvest
process time (<15 h, including sequential UF/DF step), and
clarification (<6 NTU). However, as shown in Table V, there
are differences with respect to process performance (recov-
ery, processing time, development time), economics (capital
cost, cost of consumables, cost of validation) and manufac-
turability (ease of scale-up, robustness). Our analysis is based
on a case study involving recovery of a therapeutic protein
from Pichia pastoris fermentation broth and the results are
likely to be different for a cell culture or E. coli based
application. However, these considerations and the interplay
of the various attributes are likely to stay the same and would
need to be accounted for while developing an optimal harvest
solution.
Figure 12. Dependence of yield on diavolume. Experimental data (& and
*) are obtained by comparing protein mass in permeate versus total protein
mass in the feed. Modeling (solid line) is based on Equation 13 assuming
sieving coefficient of 0.7 as measured from SDS–PAGE gels in Figure 11.
Table V. Comparison of process performance, economics, and manufacturability criteria for Option 1A, Option 1B, and Option 2.
Option 1A Option 1Ba Option 2b
Process performance
Membrane/filter area (m2) 21.4 10 30
Processing time for filtration step (hr) 0.5 1 3
Processing steps 6 5 2
Total processing time for harvest (hr) 13 14 11
Harvest yield (%) 80%c 80%c 86%
Pool turbidity (NTU) 2–3 5–6 2–3
Economics
Capital cost High (centrifuge required) High (centrifuge required) Low
Consumables cost Low Low High (MF membrane cost)
Reuse validation cost Low (no reuse required) Low (no reuse required) High (reuse required)
Manufacturability
Ease of scale-up Medium (Centrifuge scale-up can be
challenging)
Medium (Centrifuge scale-up can be
challenging)
High (linear scale-up is
straight forward)
aAssuming feed w/3% solids and 20 g/L Celpure 100.bAssuming 1.5 DVat flux of 50 LMH.cLow harvest yield is mainly due to centrifugation step yield of 80–85%.
102 Biotechnology and Bioengineering, Vol. 94, No. 1, May 5, 2006
DOI 10.1002/bit
NOMENCLATURE
A filter surface area (m2)
b channel height (m)
Cp particle concentration in the feed (kg/m3)
d channel diameter (m)
J permeate flux (m/s)
k cake compressibility factor (�)
L channel length (m)
rc cake specific resistance (m/kg)
rc0
cake resistance constant (m/kg �Pa�k)
rs particle radius (m)
Rm membrane resistance (m�1)
Rc cake resistance (m�1)
Rf fouling resistance (m�1)
S sieving coefficient (�)
TMP transmembrane pressure (Pa)
v crossflow rate (m/s)
V filtrate volume (m3)
DP differential pressure (Pa)
r density (kg/m3)
gw wall shear rate (s�1)
dc cake thickness (m)
m permeate viscosity (Pa � s)ms suspension viscosity (Pa � s)fw particle volume fraction at membrane surface (�)
fb particle volume fraction in bulk stream (�)
The authors acknowledge many Amgen individuals in process
engineering, cellular process development, and pilot plant. In
particular, we would like to thank Steve Decker, Tina Kim, Raj
Krishnan, and Stephanie Tozer for providing Pichia fermentation
broth, Libby Russell for her work in centrifugation development and
Oliver Kaltenbrunner and Acke Stokelman for helpful discussions.We
would also like to extend our acknowledgement to Sarah Hove and
Kara Lounsbury of Millipore, Sharon Squires and Craig Robinson of
GEHealthcare,GlennHiroyasu of Pall andFredHutchison of Sartorius
for their technical assistance.
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