college physics biology - saddleback.edu · (stomach enzyme) optimal ph for trypsin ... inhibitor...
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COLLEGE PHYSICS
Chapter # Chapter TitlePowerPoint Image Slideshow
BIOLOGY
Chapter 6 METABOLISMPowerPoint Image Slideshow
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Figure 8.1Metabolism
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Figure 6.2
• Energy from the sun.
• Plants photosynthesis
• Herbivores eat those plants
• Carnivores eat the herbivores
• Decomposers digest plant and animal
matter
• Energy lost as heat
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Figure 6.4
• This tree shows the evolution of the various branches of life.
• The vertical dimension is time.
• Early life forms (blue) used anaerobic metabolism
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Figure 8.UN01
Enzyme 1 Enzyme 2 Enzyme 3
Reaction 1 Reaction 2 Reaction 3ProductStarting
molecule
A B C D
Metabolism & metabolic pathways
Anabolism
Catabolism
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Catabolism• Break down
• Complex simple
• Releases NRG
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Bioenergetics
• Energy transformations
in living organisms
Energy = capacity to cause
change
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Energy Forms
Potential Energy
• Stored energy
– Capacity to do work
• Due to:
– Location
– Bond arrangement
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Energy Forms
Kinetic Energy
• Energy of motion
• Work energy
• Releases heat
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Figure 6.8
• Examples of endergonic processes (ones that require energy) and exergonic processes (ones that release energy).
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Figure 8.2A diver has more potentialenergy on the platformthan in the water.
Diving convertspotential energy tokinetic energy.
Climbing up converts the kineticenergy of muscle movementto potential energy.
A diver has less potentialenergy in the waterthan on the platform.
Energy Transformations
Potential Kinetic
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Figure 8.3
(a) First law of thermodynamics (b) Second law of thermodynamics
Chemicalenergy
Heat
ThermodynamicsEnergy transformations in matter
Matter system
Universe surroundings
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Figure 8.3a (a) First law of thermodynamics
Chemicalenergy
Conservation of energy
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Figure 8.3b(b) Second law of thermodynamicsTransformation ineffincient
Heat
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Figure 6.11
• Energy transferred from one system to another and transformed from one form to another.
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Figure 6.12 – Order & Disorder
• Entropy is a measure of randomness or disorder in a system.
• Gases have higher entropy than liquids, and liquids have higher entropy than solids.
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Temperature & Entropy
Temperature
Entr
opy
boiling
meltingsolid
liquid
gas
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Gibb’s Free Energy
• (∆G) = change in free energy during a process
• (∆H) = change in enthalpy, or change in total energy
• (∆S) = change in entropy
• (T) = temperature in Kelvin
• Only processes with a negative ∆G are spontaneous
• Spontaneous processes can be harnessed to perform work
∆G = ∆H – T∆S
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Figure 8.5
• More free energy (higher G)• Less stable• Greater work capacity
In a spontaneous change• The free energy of the system
decreases (G 0)• The system becomes more
stable• The released free energy can
be harnessed to do work
• Less free energy (lower G)• More stable• Less work capacity
(a) Gravitational motion (b) Diffusion (c) Chemical reaction
Free energy = energy capable of work
• Measure instability
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Figure 8.6a
(a) Exergonic reaction: energy released, spontaneous
Reactants
Energy
Products
Progress of the reaction
Amount of energy
released(G 0)
Fre
e e
ne
rgy
Free Energy and Metabolism
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Figure 8.6b
(b) Endergonic reaction: energy required, nonspontaneous
Reactants
Energy
Products
Amount of energy
required(G 0)
Progress of the reaction
Fre
e e
ne
rgy
Free Energy and Metabolism
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Figure 8.7
(a) An isolated hydroelectric system
(b) An open hydro-electric system
(c) A multistep open hydroelectric system
G 0
G 0
G 0G 0
G 0
G 0
Equilibrium and Metabolism
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Figure 8.8
(a) The structure of ATP
Phosphate groups
Adenine
Ribose
Adenosine triphosphate (ATP)
Energy
Inorganicphosphate
Adenosine diphosphate (ADP)
(b) The hydrolysis of ATP
ATP powers cellular work
3 main kinds of cellular work:
Chemical/Transport/Mechanical
Lowers energy state
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Figure 8.10Transport protein Solute
ATP
P P i
P iADP
P iADPATPATP
Solute transported
Vesicle Cytoskeletal track
Motor protein Protein andvesicle moved
(b) Mechanical work: ATP binds noncovalently to motorproteins and then is hydrolyzed.
(a) Transport work: ATP phosphorylates transport proteins.
Phosphorylation
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Figure 8.11
Energy from
catabolism (exergonic,
energy-releasing
processes)
Energy for cellular
work (endergonic,
energy-consuming
processes)
ATP
ADP P i
H2O
ATP cycle
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General Enzyme Characteristics
• Biological catalysts
– Increases chemical reactions
• How enzymes work?
– Lower activation energy
– Decrease amt of energy needed to get reaction going
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Figure 8.12
Transition state
Reactants
Products
Progress of the reaction
Fre
e e
ne
rgy EA
G O
A B
C D
A B
C D
A B
C D
Decreasing activation energy
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Figure 6.15
Course ofreactionwithoutenzyme
EA
without
enzyme EA withenzymeis lower
Course ofreactionwith enzyme
Reactants
Products
G is unaffectedby enzyme
Progress of the reaction
Fre
e e
ne
rgy
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Figure 8.14
Substrate
Active site
Enzyme Enzyme-substratecomplex
(a) (b)
Specificity
resuable
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Substrates
Substrates enter active site.
Enzyme-substratecomplex
Substrates are heldin active site by weakinteractions.
12
Enzyme
Activesite
Induced fit
Figure 6.16
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Substrates
Substrates enter active site.
Enzyme-substratecomplex
Substrates are heldin active site by weakinteractions.
Active site canlower EA and speedup a reaction.
12
3
Substrates areconverted toproducts.
4
Enzyme
Activesite
Figure 6.16
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Substrates
Substrates enter active site.
Enzyme-substratecomplex
Enzyme
Products
Substrates are heldin active site by weakinteractions.
Active site canlower EA and speedup a reaction.
Activesite is
availablefor two new
substratemolecules.
Products arereleased.
Substrates areconverted toproducts.
12
3
45
6
Figure 6.16
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Figure 6.16Enzyme + substrate ES complex NZ + product(s)
• Induced fit
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Figure 8.16a
Optimal temperature fortypical human enzyme (37°C)
Optimal temperature forenzyme of thermophilic
(heat-tolerant)bacteria (77°C)
Temperature (°C)
(a) Optimal temperature for two enzymes
Ra
te o
f re
ac
tio
n
120100806040200
Environmental Conditions (Temperature)
Factors Affect Enzyme Activity
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Figure 8.16b
Rate
of
reac
tio
n
0 1 2 3 4 5 6 7 8 9 10pH
(b) Optimal pH for two enzymes
Optimal pH for pepsin(stomachenzyme)
Optimal pH for trypsin(intestinal
enzyme)
Factors Affect Enzyme Activity
Environmental Conditions (pH)
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Factors Affect Enzyme ActivityEnvironmental Conditions (Ionic concentration)
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• Temperature
– Cooking?
– Refrigeration?
• pH
• Ionic concentration
How can you use this to preserve
your food items from
microorganism that could spoil
your meal?
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Factors Affect Enzyme Activity
Cofactors
– Inorganic
• Zn/Fe/Cu
Coenzymes
– Organic
• Vitamins (B12/B6)
• Binds to active site
– Stabilizes transition
state
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Figure 8.17
(a) Normal binding (b) Competitive inhibition (c) Noncompetitiveinhibition
Substrate
Activesite
Enzyme
Competitiveinhibitor
Noncompetitiveinhibitor
Ex. ATP
Factors Affect Enzyme Activity
Ex. Aspirin, penicillin, nerve gases• Sulfonamide para-aminobenzoic aicd (PABA)
• Nucleic acid synthesis
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Figure 8.17
(a) Normal binding (b) Competitive inhibition (c) Noncompetitiveinhibition
Substrate
Activesite
Enzyme
Competitiveinhibitor
Noncompetitiveinhibitor
Ex. ATP
Factors Affect Enzyme Activity
Ex. Aspirin, penicillin, nerve gases• Sulfonamide para-aminobenzoic aicd (PABA)
• Nucleic acid synthesis
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Figure 8.18Two changed amino acids werefound near the active site.
Active site
Two changed amino acidswere found in the active site.
Two changed amino acidswere found on the surface.
Evolution of Enzymes
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Figure 8.19a
Regulatory site (one of four)
(a) Allosteric activators and inhibitors
Allosteric enzymewith four subunits
Active site(one of four)
Active form
Activator
Stabilized active form
Oscillation
Nonfunctionalactive site
Inactive formInhibitor
Stabilized inactive form
Ex. Anti-anxiety drugs (Valium, Xanax, Ativan)
• Increase the activity of gamma aminobutyric acid (GABA)
Ex. Na+ activation of thrombin
Ea. AMP
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Figure 8.19a
Regulatory site (one of four)
(a) Allosteric activators and inhibitors
Allosteric enzymewith four subunits
Active site(one of four)
Active form
Activator
Stabilized active form
Oscillation
Nonfunctionalactive site
Inactive formInhibitor
Stabilized inactive form
Ex. Strychnine glycine ® in CNS
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Figure 6.17 – Competitive & noncompetitive Inhibition
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Figure 6.18 Allosteric Inhibitors
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• Competitive and noncompetitive inhibition affect the rate of reaction differently.
Competitive inhibitors affect the initial rate but do not affect the maximal rate, whereas
noncompetitive inhibitors affect the maximal rate.
Figure 6.18 Allosteric Inhibitors
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Figure 8.19b
Inactive form
Substrate
Stabilized activeform
(b) Cooperativity: another type of allosteric activation
Hemoglobin
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Figure 8.20
Caspase 1 Activesite
Substrate
SH SH
SH
Known active form Active form can
bind substrate
Allosteric
binding siteAllosteric
inhibitorHypothesis: allosteric
inhibitor locks enzyme
in inactive form
Caspase 1
Active form Allosterically
inhibited form
Inhibitor
Inactive form
EXPERIMENT
RESULTS
Known inactive form
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Figure 8.20a
Caspase 1 Activesite
Substrate
SH SH
SH
Known active form Active form can
bind substrate
Allosteric
binding siteAllosteric
inhibitorHypothesis: allosteric
inhibitor locks enzyme
in inactive form
EXPERIMENT
Known inactive form
![Page 54: COLLEGE PHYSICS BIOLOGY - saddleback.edu · (stomach enzyme) Optimal pH for trypsin ... inhibitor locks enzyme in inactive form Caspase 1 ... Enzyme 4 Enzyme 5 End product](https://reader034.vdocuments.us/reader034/viewer/2022051800/5abf16927f8b9aa15e8d9efe/html5/thumbnails/54.jpg)
Figure 8.20b
Caspase 1
Active form Allosterically
inhibited form
Inhibitor
Inactive form
RESULTS
![Page 55: COLLEGE PHYSICS BIOLOGY - saddleback.edu · (stomach enzyme) Optimal pH for trypsin ... inhibitor locks enzyme in inactive form Caspase 1 ... Enzyme 4 Enzyme 5 End product](https://reader034.vdocuments.us/reader034/viewer/2022051800/5abf16927f8b9aa15e8d9efe/html5/thumbnails/55.jpg)
Figure 6.21 Feedback Inhibition
• An important regulatory mechanism in cells.
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Figure 8.21
Active site
available
Isoleucine
used up by
cell
Feedback
inhibition
Active site of
enzyme 1 is
no longer able
to catalyze the
conversion
of threonine to
intermediate A;
pathway is
switched off. Isoleucine
binds to
allosteric
site.
Initial
substrate
(threonine)
Threonine
in active site
Enzyme 1
(threonine
deaminase)
Intermediate A
Intermediate B
Intermediate C
Intermediate D
Enzyme 2
Enzyme 3
Enzyme 4
Enzyme 5
End product
(isoleucine)
Feedback Inhibition
![Page 57: COLLEGE PHYSICS BIOLOGY - saddleback.edu · (stomach enzyme) Optimal pH for trypsin ... inhibitor locks enzyme in inactive form Caspase 1 ... Enzyme 4 Enzyme 5 End product](https://reader034.vdocuments.us/reader034/viewer/2022051800/5abf16927f8b9aa15e8d9efe/html5/thumbnails/57.jpg)
Figure 8.22
Mitochondria
The matrix containsenzymes in solution that
are involved in one stageof cellular respiration.
Enzymes for anotherstage of cellular
respiration areembedded in theinner membrane.
1 m