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    Validation of Colilert-18/Quanti-Tray

    for the Enumeration of E. coliand

    Coliform Bacteria from Water

    JANUARY 2008

    One IDEXX Drive Westbrook, Maine 04092 USA

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    Validation of Colilert-18/Quanti-Trayfor the Enumerationof E. coliand Coliform Bacteria from Water

    1 Introduction

    The Colilert-18/Quanti-Tray method is a test specifically designed for the MPNenumeration of E. coli and coliform bacteria from drinking waters and other similar

    treated and untreated waters.

    Colilert-18 simultaneously detects total coliforms and E. coli in water. It is based on

    Defined Substrate Technology (DST). The DST reagent is mixed with 100 ml of

    sample and incubated either as an presence/absence (PA) test or a most probable

    number (MPN) test. When coliform bacteria metabolize the nutrient-indicator, ONPG, thesample turns yellow. When E. coli metabolize a second nutrient-indicator, MUG, thesample fluoresces under UV illumination. Colilert-18 allows simultaneous detection of

    these bacteria at 1 cfu/100 ml within 18 hours in the presence of heterotrophic bacteriain numbers as high as 2 x 106per 100 ml sample.

    The Quanti-Tray is designed to produce quantitative bacterial counts from 100 mlsamples using DST reagents. The reagent/sample mixture is added to a Quanti-Tray

    pouch which is then sealed in a Quanti-Tray Sealer prior to incubation. The pouch is

    designed so that after sealing there are 51 wells containing reagent/sample mixture. The

    Sealer is a motor-driven, heated roller instrument designed to seal a Quanti-Tray. Thenumber of positive wells is counted and from an appropriate table the MPN of coliformbacteria and/or E. coliis determined.

    2 Scope of application of Colilert-18/Quanti-Tray

    Colilert-18/Quanti-Tray is primarily designed for the analysis of drinking water and

    similar waters. As such it has wide approval in North America (USA, Canada andMexico), South America (Brazil, Argentina, Chile and Columbia), Europe (Denmark,

    Germany, Hungary, Iceland, Ireland, Italy, Norway, Spain and UK) and the Far East

    (Japan and Korea). It is also approved for the analysis of bottled waters by theInternational Bottled Water Association and of pharmaceutical purified water by the USPharmacopeial Convention. In USA it has also been approved by the USEPA for the

    analysis of source waters and groundwaters for coliform bacteria and E. coli and ofambient and recreational waters and wastewaters for the enumeration of E. coli.

    3 Target organisms identification (ISO/TR 13843 sections 10.2.1 and 9.2)

    In the Colilert-18/Quanti-Tray method coliform bacteria are those bacteria which

    produce a yellow colouration through the action of !-galactosidase on ortho-nitrophenyl-!-D-galactopyranoside (ONPG) and E. coliare those coliform bacteria that also produce

    blue fluorescence under UV illumination through the action of !-glucuronidase on 4-methyl-umbelliferyl-!-D-glucuronide (MUG).

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    3.1 Pure culture challenge (ISO/TR 13843 section 10.2.1)

    Definitions of reactions by target and non-target bacteria were confirmed by challenging

    Colilert-18/Quanti-Tray with pure cultures of reference strains of E. coli, coliform

    bacteria and non-coliform Gram-negative bacteria sourced from the American TypeCulture Collection. Typical reactions of these reference strains are listed in Table 1.

    These strains are used by IDEXX for routine quality control of Colilert-18/Quanti-Tray.

    Table 1 Reference strains of E. coli, coliform bacteria and non-target Gram-negative bacteria used for confirming typical positive and negativereactions in Colilert-18/Quanti-Tray

    Bacterium ATCC* No. Reaction in Colilert-18

    Escherichia coli 25922Strong yellow colouration

    Strong blue fluorescence under UV

    Citrobacter freundii 8090Strong yellow colourationNo fluorescence under UV

    Klebsiella pneumoniae 31488

    Strong yellow colouration

    No fluorescence under UV

    Enterobacter aerogenes 13048Strong yellow colourationNo fluorescence under UV

    Pseudomonas aeruginosa 10145No growthNo yellow colouration

    No fluorescence under UV

    Aeromonas hydrophila 35654No growthNo yellow colouration

    No fluorescence under UV

    * American Type Culture Collection

    3.2 Sensitivity, specificity and selectivity studies (ISO/TR 13843 section 9.2)

    In terms of microbiological methods these characteristics are defined by ISO/TR 13843

    as:

    Sensitivity - the fraction of the total positives correctly assigned in the presumptivecount;

    Specificity - the fraction of the total negatives correctly assigned in the presumptivecount;

    Selectivity - the ratio of the number of target colonies to the total number of colonies in

    the sample volume.

    For Colilert-18/Quanti-Tray, these characteristics relate to the number of positive

    wells for coliforms or E. coli that actually contained target bacteria and the number ofnegative wells that are truly negative for the target bacteria. Assessment of the

    sensitivity, specificity and selectivity of Colilert-18/Quanti-Tray was achieved through theidentification of !-galactosidase and !-glucuronidase positive isolates from positive wells

    generated using natural samples derived by spiking dechlorinated drinking water withriver waters. Three sources of surface water (two rivers and one surface water reservoir)

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    were used to derive 1 litre spiked dechlorinated drinking water samples. After incubation100 yellow but non-fluorescing wells were selected from the 30 samples (3 5 fromeach sample). These were selected in a manner so to ensure that the range of yellow

    colour intensities encountered were included. Similarly, 100 yellow and fluorescing wells

    were selected to cover the range of fluorescence intensity encountered. From the 30samples only 54 negative wells were available, of which two showed cloudy growth. !-

    Galactosidase and !-glucuronidase positive and/or negative reactions were confirmedand the isolates identified using BBL Crystal E/NF miniaturised identification panels

    (Becton, Dickinson and Company, Sparks, MD, USA).

    3.2.1 Calculation of sensitivity, specificity, selectivity, false positive rate and

    false negative rates

    For each parameter the identification data were divided into four categories:-

    a = number of positive wells found to contain coliforms or E. coli(true positives);

    b = number of negative wells found to contain coliforms or E. coli(false negatives);

    c = number of positive wells found not to contain coliforms or E. coli(false positives);

    d = number of negative wells showing growth and found not to contain coliforms or E.

    coli(true negatives).

    The sensitivity, specificity, selectivity, false positive rate and false negative rates for

    coliforms and E. colifrom the data were calculated as follows:-

    Sensitivity = a / (a+b)

    Specificity = d / (c+d)

    Selectivity = log10[(a+c) / (a+b+c+d)]

    False positive rate = c / (a+c)False negative rate = b / (b+d)

    A further parameter, efficiency (E), which gives the fraction of wells correctly assigned,was calculated as E = (a+d) / (a+b+c+d).

    3.2.2 Non-E. coli coliforms

    !-Galactosidase isolates were obtained from all 100 yellow but non-fluorescing wells

    subcultured. No !-glucuronidase reactions were observed on these plates. The oxidase

    and indole reactions, BBL Crystal E/NF profiles and identifications of these isolates arepresented in Appendix A1. All were identified as !-galactosidase positive and !-

    glucuronidase negative members of the Enterobacteriaceae other than E. coli. In all, 23species of coliforms were recovered (Table 2).

    3.2.3 E. coli

    !-Glucuronidase isolates were obtained from all 100 yellow and fluorescing wells

    subcultured. The oxidase and indole reactions, BBL Crystal E/NF profiles and

    identifications of these isolates are presented in Appendix A2. Ninety-nine of the isolates

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    were identified as E. coli. The remaining isolate was identified as Klebsiella oxytoca.This isolate had a !-glucuronidase positive reaction in its Crystal E/NF panel.

    3.2.4 Negative wells

    Fifty-four negative wells were subcultured, of which only two had shown growth. These

    two yielded !-galactosidase and !-glucuronidase negative colonies that were oxidasepositive and indole negative (Appendix A3). Both were identified as Shewanella

    putrefaciens by the BBL Crystal E/NF system. No growth was obtained from the

    remaining 52 wells.

    Table 2 Identification of coliform bacteria (number of isolates) recovered from

    non-E. colicoliform positive wells of Colilert-18/Quanti-Tray

    Cedecea lapegei (1) Kluyvera ascorbata (12)

    Citrobacter amalonaticus (2) Kluyvera cryocrescens(3)

    Citrobacter freundii (10) Leclercia adecarboxylata(1)

    Enterobacter aerogenes (1) Pantoea agglomerans(9)

    Enterobacter asburiae (1) Serratia fonticola(1)

    Enterobacter cancerogenus (1) Serratia liquefaciens(3)

    Enterobacter cloacae(25) Serratia marcescens(1)

    Enterobacter sakazakii(7) Serratia odorifera(1)

    Escherichia vulneris(4) Serratia plymuthica(4)

    Hafnia alvei(1) Serratia rubidea(1)

    Klebsiella oxytoca(4) Serratia spp (1)

    Klebsiella pneumoniae(6)

    3.3 Determination of characteristics related to sensitivity and specificity

    3.3.1 Coliform Bacteria

    In the context of the Colilert-18/Quanti-Tray test coliforms are organisms that produce ayellow colouration with or without fluorescence and the outcomes for the calculatedparameters are:

    Sensitivity = a / (a+b) = 200 / (200+0) = 1Specificity = d / (c+d) = 2 / (0+2) = 1Selectivity = log10[(a+c) / (a+b+c+d)] = log10[(200+0) / (200+0+0+2)] = -0.004

    False positive rate = c / (a+c) = 0 / (200+0) = 0

    False negative rate = b / (b+d) = 0 / (0+2) = 0Efficiency (E) = (a+d) / (a+b+c+d) = (200+2) / (200+0+0+2) = 1

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    3.3.2 E. coli

    In the context of the Colilert-18/Quanti-Traytest E. coliare organisms that produce a

    yellow colouration and fluorescence and the outcomes for the calculated parameters

    are:

    Sensitivity = a / (a+b) = 99 / (99+0) = 1Specificity = d / (c+d) = 102 / (1+102) = 0.99

    Selectivity = log10[(a+c) / (a+b+c+d)] = log10[(99+1) / (99+0+1+102)] = -0.305False positive rate = c / (a+c) = 1 / (99+1) = 0.01

    False negative rate = b / (b+d) = 0 / (0+102) = 0Efficiency (E) = (a+d) / (a+b+c+d) = (99+102) / (99+0+1+102) = 0.995

    The outcomes of the analyses of the data show that for coliform bacteria the Colilert-

    18/Quanti-Tray method is highly sensitive and specific, with zero false-positive and false-

    negative rates. The method is also very selective with a value of-004, which is much better than the guidance value of -1 suggested by ISO/TR 13843 for

    colony count methods. The method can be said to be highly efficient for coliform bacteria

    with an efficiency value of 1. The identification data shows that Colilert-18/Quanti-Trayrecovers a wide range of coliform bacteria.

    For E. coliColilert-18/Quanti-Tray is also highly sensitive and specific. The selectivity (-0.305) is less than that for coliform bacteria, but this is to be expected from a dual test

    system where E. coliis a subset of the coliform bacteria group. The value is still better

    than the guidance value of ISO/TR 13843. The method is still highly efficient (E = 0.995)

    for the detection of E. coli.

    4 Counting uncertainty (ISO 13843 section 10.2.1 and Annex B)

    Repeatability and reproducibility are two estimates of the reliability that can be achieved

    with an analytical method. These can be assessments of the whole method usingappropriate natural samples, or of the counting uncertainty associated with reading the

    results of a method. The result produced by any method will be dependent upon theease with which a count of colonies or positive MPN reactions can be made by analysts.

    This will be affected by the distinctiveness of colonial morphology of target and non-

    target organisms on an enumeration agar, or the clarity of positive and negativereactions in broth-based MPN tests. Assessments of counting uncertainty can, therefore,provide an indication of any potential problems that could occur with wide adoption of a

    method.

    Repeatability (r) and reproducibility (R) are defined as follows:

    Repeatability closeness of the agreement between the results of successivemeasurements of the same measurand carried out under the same

    conditions of measurement

    Reproducibility closeness of the agreement between the results of measurements onthe same measurand carried out under changed conditions of

    measurement

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    When applied to counting of microbiological colonies on an agar plate or positivereactions in an MPN test, the same or changed condition is the counting analyst. Thus,in this context, repeatability is the agreement in counts obtained by repeated counting by

    one analyst, and reproducibility is the agreement in counts obtained by repeated

    counting by two or more analysts. The assessment of reproducibility is generally moreinformative than the assessment of repeatability.

    ISO/TR 13843 Annex B provides guidance on the assessment of counting repeatability

    and reproducibility using relative standard deviations (RSD) of repeated counts. It alsorecommends that, when using pure cultures, RSDs should ideally be < 0.02 (i.e. not

    more that 2 % deviation). Counting uncertainty studies were conducted by IDEXXanalysts and the data is presented in Appendix B. The counting was done so that eachanalyst were not aware of other analysts counts and the resulting MPNs recorded as

    whole integers. The calculated RSDs for MPNs from Colilert-18/Quanti-Tray

    inoculated with a typical coliform (Klebsiella pneumoniae ATCC 33186) and E. coli

    (ATCC 25922) were:

    Klebsiella pneumoniae Repeatability = 0.022

    Reproducibility = 0.020

    Escherichia coli Repeatability = 0.000Reproducibility = 0.007

    The values for the typical coliform are of the order of the guidance value of < 0.02

    (ISO/TR 13843 section B1), whilst those for E. coliare well below the guidance value,

    indicating that reliable MPN counting for Klebsiella pneumoniae and E. coli can beachieved with Colilert-18/Quanti-Tray.

    5 Robustness time sensitivity (ISO/TR 13843 sections 10.2.2 and B.4)

    Two aspects of robustness are relevant to Colilert

    -18/Quanti-Tray

    . These are therecommended incubation period of 18-22 hours and the shelf life of up to 15 months with

    storage at 4-25 C for the Colilert-18 medium. Replicate counts of analyses ofsuspensions of low numbers of reference cultures of E. coli, Klebsiella pneumoniae and

    Citrobacter freundii after 18 hours and 22 hours incubation for the same batch of

    Colilert-18 stored for a period up to 541 days at 25 C are presented in Appendix C.

    5.1 Robustness of incubation time

    There were 48 paired results for counts after 18 hours and 22 hours incubation. For E.

    coli all 48 paired counts were the same after the two incubation time, while for the

    Klebsiella pneumoniae47 (98 %) of the counts were the same and the remaining paired

    count showed an increase of only one positive well at 22 hours incubation. However, forthe Citrobacter freundiithere were increased counts after 22 hours incubation compared

    to 18 hours incubation from 13 (27 %) of the samples. All except one of these higher

    counts were increases of only one or two positive wells. This strain of Citrobacterappears to show a relatively slower growth rate or weaker enzyme kinetics compared tothe other bacteria tested.

    The data shows that for E. coli and robust coliform bacteria such as Klebsiella

    pneumoniae the recommended incubation period of 18-22 hours is robust, but that for

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    some slower growing coliform bacteria or weak enzyme producers there can be anincrease in counts at 22 hours incubation compared to that at 18 hours incubation.Increases in counts over an prescribed incubation period (e.g. 18-24 hours for typical

    membrane filtration methods such as ISO 9308-1) is a well recognised phenomenon,

    particularly with environmental coliforms. However, provided that increases in countsafter extended incubation are not excessive, for practical and operational considerations

    counts after 18 hours incubation are considered acceptable.

    5.3 Robustness of storage of Colilert-18

    The Colilert-18medium has a stated shelf of 12 months with storage at 4-25 C. Thedata for all three bacteria tested with the same batch of medium stored at 25 C showsno difference in performance with storage up to 541 days, well in excess of the one year

    stipulated. The higher storage temperature was chosen as this would present a greater

    challenge to the stability of the Colilert-18 medium than storage at refrigeration

    temperatures.

    6 Upper working limit (ISO/TR 13843 sections 10.2.4 and 6.3.3)

    The Colilert-18/Quanti-Traytest is an MPN method with an arbitrary counting range of

    0 to 201, set by the number of wells in the Quanti-Tray pouch. According to ISO/TR13843 section 6.3.3 no upper limit can be set for MPN methods for practical reasons andfor statistical reasons because precision does not depend in a simple way on the

    number of particles introduced in the detection set.

    7 Precision (ISO/TR 13843 sections 10.2.5 and 9.5.5)

    The precision of an MPN method is described by the 95 % confidence intervals

    calculated for each MPN value (ISO/TR 13843 section 9.5.5). The confidence intervalsfor counts from Colilert-18/Quanti-Tray, calculated using the program available from

    the US Food and Drug Administration (FDA) Bacteriological Analytical Manual (BAM)online (http://www.cfsan.fda.gov/~ebam/bam-a2.html#excl), are given in Appendix D.

    A theoretical repeatability for each MPN can be derived from the MPN and its confidence

    intervals. Relative uncertainty values for each MPN (log10SD, calculated from the MPN

    95 % confidence interval values) and repeatability (relative standard uncertainty) ascoefficients of variation (CV%) are also presented in Appendix D. These Poisson valuescan be used as minimum precision values to which any appropriate data a laboratory

    may have (e.g. on variation in decanting the test volume or counting uncertainty) can becombined to derive an overall estimate of repeatability for each MPN.

    8 References

    8.1 ISO standards

    ISO 9308-1:2000 Water Quality Detection and enumeration of Escherichia coliandcoliform bacteria Part 1: Membrane filtration method. Geneva: InternationalOrganisation for Standardization.

    ISO/TR 13843:2000(E) Water Quality Guidance on validation of microbiological

    methods. Geneva: International Organization for Standardization.

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    Appendix A Data from sensitivity, specificity and selectivity studies (see Section

    3.2)

    Appendix A1 Identification of isolates from yellow but non-fluorescing wellsfrom Colilert-18/Quanti-Tray

    Isolate Ref Oxidase Indole Crystal E/NF profile Identification Confidence

    Y1 - + 5765637153 Enterobacter sakazakii 0.5861

    Y2 - - 4764417153 Pantoea agglomerans 0.7217

    Y3 - + 4724477151 Kluyvera cryocrescens 0.9829

    Y4 - - 7764477153 Enterobacter cloacae 0.9962

    Y5 - + 4764477151 Kluyvera cryocrescens 0.6287

    Y6 - - 4724467153 Pantoea agglomerans 0.7127

    Y7 - + 5764475555 Klebsiella oxytoca 0.9825

    Y8 - - 4760427053 Pantoea agglomerans 0.9481

    Y9 - - 5764637051 Kluyvera ascorbata 0.9264Y10 - - 5766477152 Enterobacter cloacae 0.9886

    Y11 - - 7424676151 Citrobacter freundii 0.9335

    Y12 - - 7764672153 Enterobacter cloacae 0.8268

    Y13 - - 7764476157 Enterobacter sakazakii 0.6102

    Y14 - + 5764637151 Kluyvera ascorbata 0.9925

    Y15 - + 5765677151 Kluyvera ascorbata 0.8702

    Y16 - - 4764627151 Escherichia vulneris 0.5764

    Y17 - - 7734457051 Pantoea agglomerans 0.9932

    Y18 - + 5765477157 Klebsiella oxytoca 0.8524

    Y19 - - 7766276157 Serratia liquefaciens 0.5712

    Y20 - - 5764476153 Enterobacter cloacae 0.8943

    Y21 - - 3764217153 Cedecea lapagei 0.9835

    Y22 - - 5764427151 Pantoea agglomerans 0.7613

    Y23 - + 7764637157 Enterobacter sakazakii 0.9734

    Y24 - + 5764627452 Leclercia adecarboxylata 0.999

    Y25 - - 7764627555 Klebsiella pneumoniae 0.9154

    Y26 - - 0764437152 Pantoea agglomerans 0.8776

    Y27 - - 7765275557 Serratia rubidaea 0.9942

    Y28 - - 4760056153 Enterobacter asburiae 0.9504

    Y29 - - 5765276157 Serratia liquefaciens 0.5545

    Y30 - + 5764617151 Kluyvera ascorbata 0.982

    Y31 - + 5764677557 Klebsiella oxytoca 0.9555

    Y32 - - 7564677151 Enterobacter cloacae 0.9987

    Y33 - - 4560477153 Enterobacter cloacae 0.9961

    Y34 - - 5464454151 Citrobacter freundii 0.9998

    Y35 - - 5464654155 Citrobacter freundii 0.9994

    Y36 - - 5764427151 Pantoea agglomerans 0.7613

    Y37 - - 5664456055 Citrobacter freundii 0.9973

    Y38 - - 4764475555 Klebsiella pneumoniae 0.9241

    Y39 - + 5760467555 Klebsiella pneumoniae 0.9413

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    Y40 - - 4764627051 Escherichia vulneris 0.9475

    Y41 - - 5764677150 Enterobacter cloacae 0.8043

    Y42 - - 4760473151 Enterobacter cloacae 0.9673

    Y43 - + 5764637151 Kluyvera ascorbata 0.9925

    Y44 - - 5766476156 Enterobacter sakazakii 0.8111

    Y45 - - 7765627157 Enterobacter sakazakii 0.9416Y46 - + 5774677153 Kluyvera ascorbata 0.9439

    Y47 - - 7775677555 Klebsiella pneumoniae 0.9853

    Y48 - - 7765627157 Enterobacter sakazakii 0.9416

    Y49 - - 5464477553 Enterobacter cloacae 0.9999

    Y50 - - 7775637153 Enterobacter cancerogenus 0.5033

    Y51 - + 4774437151 Kluyvera cryocrescens 0.8422

    Y52 - - 5764677557 Enterobacter aerogenes 0.8747

    Y53 - - 5464457051 Citrobacter freundii 0.9962

    Y54 - - 7764272153 Enterobacter cloacae 0.8189

    Y55 - - 5766477152 Enterobacter cloacae 0.9886

    Y56 - - 5764476152 Enterobacter cloacae 0.9048

    Y57 - - 5764256057 Serratia plymuthica 0.8677

    Y58 - + 5764676557 Serratia odorifera 0.7963

    Y59 - + 5420677151 Citrobacter amalonaticus 0.8735

    Y60 - - 5766476152 Enterobacter cloacae 0.6927

    Y61 - - 5470473153 Enterobacter cloacae 0.9996

    Y62 - + 5774637151 Kluyvera ascorbata 0.9864

    Y63 - + 5764676153 Kluyvera ascorbata 0.9308

    Y64 - - 4764476057 Enterobacter sakazakii 0.7089

    Y65 - - 5766476153 Enterobacter cloacae 0.6618

    Y66 - - 7765671151 Enterobacter cloacae 0.937

    Y67 - - 7764477153 Enterobacter cloacae 0.9962

    Y68 - - 5764276057 Serratia plymuthica 0.8302Y69 - - 4675477153 Enterobacter cloacae 0.9921

    Y70 - - 5765276057 Serratia plymuthica 0.6877

    Y71 - - 5624657151 Citrobacter freundii 0.996

    Y72 - - 5725654447 Serratia fonticola 0.9933

    Y73 - - 5766477152 Enterobacter cloacae 0.9886

    Y74 - - 5764477555 Klebsiella pneumoniae 0.9919

    Y75 - - 5724627052 Escherichia vulneris 0.9987

    Y76 - - 5766476153 Enterobacter cloacae 0.6618

    Y77 - + 5420677151 Citrobacter amalonaticus 0.8735

    Y78 - - 7767276157 Serratia liquefaciens 0.6819

    Y79 - - 5420444051 Citrobacter freundii 0.9799Y80 - - 7764276557 Serratia marcescens 0.9547

    Y81 - - 5766477153 Enterobacter cloacae 0.9872

    Y82 - - 5423614153 Hafnia alvei 0.9847

    Y83 - + 5764627151 Kluyvera ascorbata 0.9942

    Y84 - + 5765677557 Klebsiella oxytoca 0.9715

    Y85 - - 5765476553 Enterobacter cloacae 0.9226

    Y86 - - 5767476152 Enterobacter cloacae 0.7434

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    Y87 - + 5764637051 Kluyvera ascorbata 0.9876

    Y88 - - 5764276057 Serratia plymuthica 0.8302

    Y89 - + 5664677151 Kluyvera ascorbata 0.9349

    Y90 - - 4464654141 Citrobacter freundii 0.999

    Y91 - - 5764627051 Escherichia vulneris 0.6454

    Y92 - - 5764455555 Klebsiella pneumoniae 0.9504

    Y93 - - 5765647151 Pantoea agglomerans 0.6856

    Y94 - - 7765256157 Serratia spp. 0.9846

    Y95 - - 5765477153 Enterobacter cloacae 0.9957

    Y96 - + 5464654151 Citrobacter freundii 0.9771

    Y97 - + 5765637151 Kluyvera ascorbata 0.8306

    Y98 - - 5764427151 Pantoea agglomerans 0.7613

    Y99 - - 5764077153 Enterobacter cloacae 0.9948

    Y100 - - 5420656050 Citrobacter freundii 0.994

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    Appendix A2 Identification of isolates from yellow and fluorescing wells from

    Colilert-18/Quanti-Tray

    Isolate Ref Oxidase Indole Crystal E/NF profile Identification Confidence

    F1 - + 5464444171 Escherichia coli 0.9998

    F2 - + 5461444171 Escherichia coli 0.9737

    F3 - + 5464444171 Escherichia coli 0.9998

    F4 - + 4464444171 Escherichia coli 0.9813

    F5 - + 5465464171 Escherichia coli 0.991

    F6 - + 5464444171 Escherichia coli 0.9998

    F7 - + 5464444171 Escherichia coli 0.9998

    F8 - + 5464444171 Escherichia coli 0.9998

    F9 - + 5464444171 Escherichia coli 0.9998

    F10 - + 5464444171 Escherichia coli 0.9998

    F11 - + 5424444171 Escherichia coli 0.9997

    F12 - + 4464444171 Escherichia coli 0.9813

    F13 - + 5424444171 Escherichia coli 0.9997F14 - + 5464444171 Escherichia coli 0.9998

    F15 - + 5464444171 Escherichia coli 0.9998

    F16 - + 5425444571 Escherichia coli 0.9679

    F17 - + 5464444171 Escherichia coli 0.9998

    F18 - + 5464444171 Escherichia coli 0.9998

    F19 - + 5464444171 Escherichia coli 0.9998

    F20 - + 5464444171 Escherichia coli 0.9998

    F21 - + 5424444171 Escherichia coli 0.9997

    F22 - + 5464444171 Escherichia coli 0.9998

    F23 - + 5424444171 Escherichia coli 0.9997

    F24 - + 5465444161 Escherichia coli 0.9976F25 - + 5465444161 Escherichia coli 0.9976

    F26 - + 5464044171 Escherichia coli 0.999

    F27 - + 5465446071 Escherichia coli 0.9945

    F28 - + 5464444171 Escherichia coli 0.9998

    F29 - + 5464444171 Escherichia coli 0.9998

    F30 - + 5464444171 Escherichia coli 0.9998

    F31 - + 5464444171 Escherichia coli 0.9998

    F32 - + 5425444571 Escherichia coli 0.9679

    F33 - + 5464444171 Escherichia coli 0.9998

    F34 - + 5464444171 Escherichia coli 0.9998

    F35 - + 5424444171 Escherichia coli 0.9997

    F36 - + 5464444171 Escherichia coli 0.9998

    F37 - + 5464044171 Escherichia coli 0.999

    F38 - + 5464444171 Escherichia coli 0.9998

    F39 - + 5464444171 Escherichia coli 0.9998

    F40 - + 5465464171 Escherichia coli 0.991

    F41 - + 5464444171 Escherichia coli 0.9998

    F42 - + 5464444171 Escherichia coli 0.9998

    F43 - + 5464444171 Escherichia coli 0.9998

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    F44 - + 5464444171 Escherichia coli 0.9998

    F45 - + 5424444171 Escherichia coli 0.9997

    F46 - + 5464444171 Escherichia coli 0.9998

    F47 - + 5665444171 Escherichia coli 0.9962

    F48 - + 5464444171 Escherichia coli 0.9998

    F49 - + 5465404171 Escherichia coli 0.9314F50 - + 5464444171 Escherichia coli 0.9998

    F51 - + 5465464171 Escherichia coli 0.991

    F52 - + 5464444171 Escherichia coli 0.9998

    F53 - + 5464444171 Escherichia coli 0.9998

    F54 - + 5464444171 Escherichia coli 0.9998

    F55 - + 5424444171 Escherichia coli 0.9997

    F56 - + 5464444171 Escherichia coli 0.9998

    F57 - + 5464444171 Escherichia coli 0.9998

    F58 - + 5464444171 Escherichia coli 0.9998

    F59 - + 5464444171 Escherichia coli 0.9998

    F60 - + 5464444171 Escherichia coli 0.9998

    F61 - + 5464444171 Escherichia coli 0.9998

    F62 - + 5464444171 Escherichia coli 0.9998

    F63 - + 5464444171 Escherichia coli 0.9998

    F64 - + 5464444171 Escherichia coli 0.9998

    F65 - + 5424444171 Escherichia coli 0.9997

    F66 - + 5665444171 Escherichia coli 0.9962

    F67 - + 5464444171 Escherichia coli 0.9998

    F68 - + 5464444171 Escherichia coli 0.9998

    F69 - + 5435444171 Escherichia coli 0.9803

    F70 - + 5464444171 Escherichia coli 0.9998

    F71 - + 5464444171 Escherichia coli 0.9998

    F72 - + 4464444171 Escherichia coli 0.9813F73 - + 5464444171 Escherichia coli 0.9998

    F74 - + 5724444571 Escherichia coli 0.9999

    F75 - + 5465464171 Escherichia coli 0.991

    F76 - + 5424444171 Escherichia coli 0.9997

    F77 - + 5424444171 Escherichia coli 0.9997

    F78 - + 5464444171 Escherichia coli 0.9998

    F79 - + 5464444171 Escherichia coli 0.9998

    F80 - - 5464444171 Escherichia coli 0.9998

    F81 - + 5424444061 Escherichia coli 0.8035

    F82 - + 5464044171 Escherichia coli 0.999

    F83 - + 5465446071 Escherichia coli 0.9945F84 - + 5464444171 Escherichia coli 0.9998

    F85 - + 5464444171 Escherichia coli 0.9998

    F86 - + 5564044171 Escherichia coli 0.9911

    F87 - + 5464444171 Escherichia coli 0.9998

    F88 - + 5464444171 Escherichia coli 0.9998

    F89 - + 5464444171 Escherichia coli 0.9998

    F90 - + 5424444171 Escherichia coli 0.9997

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    F91 - + 5464444171 Escherichia coli 0.9998

    F92 - + 5464444171 Escherichia coli 0.9998

    F93 - + 5424444171 Escherichia coli 0.9997

    F94 - + 5420444571 Escherichia coli 0.9983

    F95 - + 5425444571 Escherichia coli 0.9679

    F96 - + 5464444171 Escherichia coli 0.9998

    F97 - + 5464444171 Escherichia coli 0.9998

    F98 - + 5464444171 Escherichia coli 0.9998

    F99 - + 5465464171 Escherichia coli 0.991

    F100 - + 5765475577 Klebsiella oxytoca 0.7486

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    14

    Appendix A3 Identification of isolates from negative wells from Colilert-

    18/Quanti-Tray

    IsolateRef

    !-Gal !-Gluc Oxidase IndoleCrystal E/NF

    profileIdentification Confidence

    N1 NO GROWTHN2 NO GROWTH

    N3 NO GROWTH

    N4 - - + - 3103310212 Shewanella putrefaciens 0.9994

    N5 NO GROWTH

    N6 NO GROWTH

    N7 NO GROWTH

    N8 NO GROWTH

    N9 NO GROWTH

    N10 NO GROWTH

    N11 NO GROWTH

    N12 NO GROWTHN13 NO GROWTH

    N14 NO GROWTH

    N15 NO GROWTH

    N16 NO GROWTH

    N17 - - + - 3103310212 Shewanella putrefaciens 0.9994

    N18 NO GROWTH

    N19 NO GROWTH

    N20 NO GROWTH

    N21 NO GROWTH

    N22 NO GROWTH

    N23 NO GROWTH

    N24 NO GROWTH

    N25 NO GROWTH

    N26 NO GROWTH

    N27 NO GROWTH

    N28 NO GROWTH

    N29 NO GROWTH

    N30 NO GROWTH

    N31 NO GROWTH

    N32 NO GROWTH

    N33 NO GROWTH

    N34 NO GROWTH

    N35 NO GROWTH

    N36 NO GROWTH

    N37 NO GROWTH

    N38 NO GROWTH

    N39 NO GROWTH

    N40 NO GROWTH

    N41 NO GROWTH

    N41 NO GROWTH

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    N43 NO GROWTH

    N44 NO GROWTH

    N45 NO GROWTH

    N46 NO GROWTH

    N47 NO GROWTH

    N48 NO GROWTHN49 NO GROWTH

    N50 NO GROWTH

    N51 NO GROWTH

    N52 NO GROWTH

    N53 NO GROWTH

    N54 NO GROWTH

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    16

    Appendix B Data from counting uncertainty studies (see Section 4)

    Appendix B1 Counting uncertainty for MPNs* of yellow non-fluorescing wells

    from Colilert-18/Quanti-Trayinoculated with KlebsiellapneumoniaeATCC 33186

    * Most Probable Number recorded as whole integers

    AnalystA

    Read 1

    AnalystA

    Read 2

    AnalystB

    Read

    AnalystC

    ReadRepeatability Reproducibility

    Sample MPN MPN MPN MPN Mean St Dev RSD sq Mean St Dev RSD sq

    1 2 2 2 2 2.00 0.0000 0.0000 2.00 0.0000 0.0000

    2 6 6 6 6 6.00 0.0000 0.0000 6.00 0.0000 0.0000

    3 19 19 19 19 19.00 0.0000 0.0000 19.00 0.0000 0.0000

    4 18 18 18 18 18.00 0.0000 0.0000 18.00 0.0000 0.0000

    5 36 36 36 36 36.00 0.0000 0.0000 36.00 0.0000 0.0000

    6 34 34 34 36 34.00 0.0000 0.0000 34.67 1.1547 0.0011

    7 31 31 31 31 31.00 0.0000 0.0000 31.00 0.0000 0.0000

    8 27 27 27 27 27.00 0.0000 0.0000 27.00 0.0000 0.0000

    9 56 56 56 56 56.00 0.0000 0.0000 56.00 0.0000 0.0000

    10 50 50 50 50 50.00 0.0000 0.0000 50.00 0.0000 0.0000

    11 41 41 41 41 41.00 0.0000 0.0000 41.00 0.0000 0.0000

    12 48 48 48 48 48.00 0.0000 0.0000 48.00 0.0000 0.0000

    13 56 56 56 56 56.00 0.0000 0.0000 56.00 0.0000 0.0000

    14 89 89 89 89 89.00 0.0000 0.0000 89.00 0.0000 0.0000

    15 78 78 78 78 78.00 0.0000 0.0000 78.00 0.0000 0.0000

    16 66 70 70 70 68.00 2.8284 0.0017 68.67 2.3094 0.0011

    17 109 109 109 109 109.00 0.0000 0.0000 109.00 0.0000 0.0000

    18 78 89 89 89 83.50 7.7782 0.0087 85.33 6.3509 0.0055

    19 95 95 95 95 95.00 0.0000 0.0000 95.00 0.0000 0.0000

    20 95 95 95 95 95.00 0.0000 0.0000 95.00 0.0000 0.0000

    21 95 101 101 101 98.00 4.2426 0.0019 99.00 3.4641 0.0012

    22 83 89 89 89 86.00 4.2426 0.0024 87.00 3.4641 0.0016

    23 109 109 109 109 109.00 0.0000 0.0000 109.00 0.0000 0.0000

    24 101 101 109 109 101.00 0.0000 0.0000 106.33 4.6188 0.0019

    25 145 145 145 145 145.00 0.0000 0.0000 145.00 0.0000 0.0000

    26 145 145 145 145 145.00 0.0000 0.0000 145.00 0.0000 0.0000

    27 201 201 201 201 201.00 0.0000 0.0000 201.00 0.0000 0.0000

    28 165 165 165 165 165.00 0.0000 0.0000 165.00 0.0000 0.0000

    29 165 165 165 165 165.00 0.0000 0.0000 165.00 0.0000 0.0000

    30 201 201 201 201 201.00 0.0000 0.0000 201.00 0.0000 0.0000

    Sum RSD 0.0147 Sum RSD 0.0125

    RSDc 0.0221 RSDc 0.0204

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    Appendix C Replicate counts from suspensions of E. coli, Klebsiella

    pneumoniaeand Citrobacter freundiifrom Colilert-18/Quanti-Trayafter 18 hours and 22 hours incubation using Colilert-18

    stored at 25 C for up to 541 days (see Section 5)

    Number of positive wells

    Escherichia coli Klebsiella pneumoniae Citrobacter freundiiDay postmanufacture

    18 h 22 h%

    change18 h 22 h

    %change

    18 h 22 h%

    change

    8 247

    247

    000

    121115

    121115

    000

    111416

    111416

    000

    15 9168

    9168

    000

    91913

    91913

    000

    257

    357

    + 50 %00

    24 14910

    14910

    000

    141216

    141216

    000

    141618

    141618

    000

    30 1317

    11

    1317

    11

    00

    0

    1816

    13

    1816

    13

    00

    0

    1818

    8

    1818

    8

    00

    0

    36 813

    14

    813

    14

    00

    0

    1813

    17

    1813

    17

    00

    0

    1615

    16

    1615

    16

    00

    0

    44 85

    9

    85

    9

    00

    0

    2414

    19

    2414

    19

    00

    0

    1116

    10

    1218

    11

    + 9 %+ 13 %

    + 10 %

    56 134

    4

    134

    4

    00

    0

    1016

    14

    1016

    14

    00

    0

    67

    11

    714

    11

    + 17 %+ 100 %

    0

    84 10

    88

    10

    88

    0

    00

    14

    1619

    14

    1619

    0

    00

    11

    812

    11

    812

    0

    00

    111 9

    5

    21

    9

    5

    21

    0

    0

    0

    20

    12

    12

    20

    12

    12

    0

    0

    0

    20

    17

    17

    20

    17

    17

    0

    0

    0

    138 3

    2

    9

    3

    2

    9

    0

    0

    0

    14

    15

    12

    14

    15

    12

    0

    0

    0

    8

    10

    13

    9

    10

    13

    + 13 %

    0

    0

    175 711

    12

    711

    12

    00

    0

    1520

    22

    1620

    22

    + 7 %0

    0

    1620

    30

    1621

    30

    0+ 5 %

    0

    205 108

    14

    108

    14

    00

    0

    1720

    18

    1720

    18

    00

    0

    1818

    22

    1818

    22

    00

    0

    269 8

    1010

    8

    1010

    0

    00

    13

    2619

    13

    2619

    0

    00

    14

    1714

    14

    1714

    0

    00

    319 13

    18

    13

    18

    0

    0

    15

    17

    15

    17

    0

    0

    4

    13

    5

    15

    + 25 %

    + 15 %

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    19

    13 13 0 11 11 0 13 14 + 8 %

    367 211

    10

    211

    10

    00

    0

    1221

    20

    1221

    20

    00

    0

    1720

    21

    1720

    21

    00

    0

    541 7

    10

    9

    7

    10

    9

    0

    0

    0

    13

    17

    16

    13

    17

    16

    0

    0

    0

    11

    11

    8

    11

    12

    9

    0

    + 9 %

    + 13 %

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    20

    Appendix D Ninety-five percent confidence intervals and theoretical

    repeatabilities for each MPN value for the 51 well Colilert-18/Quanti-Tray(see Section 7)

    95% ConfidenceIntervals Theoretical repeatabilityNo. of wellsgiving

    positivereaction

    MPN per 100ml sample

    Lower Upper

    RepeatabilitystandarddeviationLog10SD

    Relativestandard

    uncertaintyCV%

    0

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    33 53.1 37.5 76.2 0.0791 18.2

    34 56.0 39.7 80.1 0.0783 18.0

    35 59.1 42.0 84.4 0.0776 17.9

    36 62.4 44.6 88.8 0.0770 17.7

    37 65.9 47.2 93.7 0.0765 17.6

    38 69.7 50.0 99.0 0.0761 17.5

    39 73.8 53.1 104.8 0.0758 17.4

    40 78.2 56.4 111.2 0.0756 17.4

    41 83.1 59.9 118.3 0.0756 17.4

    42 88.5 63.9 126.2 0.0757 17.4

    43 94.5 68.2 135.4 0.0761 17.5

    44 101.3 73.1 146.0 0.0768 17.7

    45 109.1 78.6 158.7 0.0778 17.9

    46 118.4 85.0 174.5 0.0794 18.3

    47 129.8 92.7 195.0 0.0819 18.9

    48 144.5 102.3 224.1 0.0859 19.849 165.2 115.2 272.2 0.0929 21.4

    50 200.5 135.8 387.6 0.1094 25.2

    51 > 200.5 146.1 infinite - -