cloudbiolinux = genomics resources for use on cloud platforms. includes: – an amazon machine image...
TRANSCRIPT
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Cloudbiolinux = Genomics resources for use on cloud platforms. Includes:– An Amazon Machine Image with
lots of handy bioinformatics software pre-installed.
– Eucalyptus image–…
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Cloudbiolinux is good for…
• You need lots of bioinformatics software and don’t want to bother installing all of it.
• You need a cluster to compute your job and you need some/lots of bioinformatics software pre-installed.
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Show software…
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Using cloudbiolinux
1. Fire up an individual EC2 instance using the AMIs
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Show AMIs…
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Using cloudbiolinux
1. Fire up an individual EC2 instance using the AMIs
2. Create a cluster using biocloudcentral.
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Demo cloudman…
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Head node (“master”)
Transient NFS
Compute nodes
Instance storage
Compute jobs (SGE)
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Head node (“master”)
Transient NFS
Compute nodes
Instance storage
Input data
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Head node (“master”)
Transient NFS
Compute nodes
Instance storageOutput
data
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Head node (“master”)
Transient NFS
Compute nodes
Instance storageOutput
data
Post-processed data
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Points to remember
• Select the right size worker nodes for your jobs.
• Job allocation scheme used in SGE can be adjusted for your needs.
• You can add EBS volumes if you want to save the data and compute again later.