cloning and purification of a tetrameric … · cloning and purification of a tetrameric...
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1. „Alexandru Ioan Cuza” Universi ty, Facul ty of Biology, Department of Molecular and Experimental Biology, Iasi , Romania
2. Inst i tute for Biochemistry and Molecular Biology, Center for Biochemistry and Molecular Cel l Research, Albert Ludwigs Universi ty, Freiburg, Germany
* marius [email protected]
Marius Mihăşan
1
, Vlad Artenie
1*
, Roderich Brandsch
2
The soil bacterium Arthrobacter nicotinovorans carries the pAO1 catabolic megaplasmid which enables
it to grow on nicotine (Igloi and Brandsch, 2003). Besides the well-characterized pathway for nicotine
degradation (Brandsch, 2006), pAO1 carries a gene cluster of a hypothetical pathway for carbohydrate
utilization. This cluster consists of ORFs of a transcriptional regulator, of a sugar ABC-transporter, and
of several putative dehydrogenases and oxidoreductases. Previously, we established that the pAO1 orf39
gene encodes an aldehyde-dehydrogenase (Mihasan, 2010) and orf40 encodes an sugar dehydrogenase.
Here we focus on further characterization the ORF40 protein and elucidation of its possible role in the
cell. By cloning the gene in the plasmid vector pH6EX3, we were able to express it as a recombinant
His-tagged protein and to easily purify it to homogenity.
GntR
ATP-b Perm Perm
PSBP
ORF38
ORF39
OR
ORF40
ORF42
ORF37
ORF41
1 kB
ABC type transporter system
Isloation and cloning of orf40. The orf40 was isolated by PCR using the primers in table 1 and a
suspension of Arthrobacter nicotinovorans cells as template. Directional cloning (Sambrook J, Fritsch
EF, Maniatis T,1989) of the fragment containing the orf40 in the pH6EX3 vector was achieved by
using HindIII şi XhaI (NEB, U.K) enzymes and Rapid DNA ligation Kit, Roche). Transformed E. coli
XL1 Blue competent cells were selected on plates containing ampiciline (50 microg/ml) and the
recombinant plasmid was checked for the presence of insert by restriction enzyme digestion.
Protein expresion was achived using auto-inducible medium as described elsewhere. (Mihasan,
Ungureanu & Artenie, 2007) Protein purification was done using standard IMAC techniques
(Ausubel M Frederick et al., 2002) on Fast-Flow Ni-chelating Sepharose (Amersham Biosciences,
Sweden). Native molecular weight determination was done using gel permeation chromatography on
an HiLoad 16/60 Superdex 200 column connected to an AKTA Basic FPLC system. Protein
concentration was assayed using the dye-binding method of Bradford (Bradford,1976). SDS-PAGE
was performed using the discontinuous system of Laemlli fallowing the procedure described by
Sambrook, 1989.
I n t r o d u c t i o n
M e t h o d s
P u r i f i c a t i o n a n d n a t i v e M W d e t e r m i n a t i o n
The ORF40 was cloned, expressed and purified to homogeneity. It consists of an novel sugar-oxidoreductase of 47 kDa, which is an tetramer as assayed by gel-permeation chromatography. The brown color of the
purified enzyme preparations indicated that it contains an co-factor. Mass spectroscopy indicated that the enzyme contains 2 atoms of Zn per molecule of monomer, classifying the enzyme as a alcohol dehydrogenase.
In order to fully establish the biotechnological potential of this enzyme, serious efforts are undertaken to develop a suitable method for assaying the enzyme activity and to further characterise the enzyme (heat stability,
pH stability, Km, Kcat,).
C o n c l u s i o n s
1 Ausubel M Frederick, Brent Roger, Kingston E Robert , Moore D David,Seidman J G,Smith A John, Struhl Kevin (2002): Short protocols in molecular biology, , a-5-a ed., vol. , John Wiley & Sons.
2. Bradford, M (1976): A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem, 72(), 248-254,
3. Brandsch Roderich. (2006): Microbiology and biochemistry of nicotine degradation. Appl. Microbiol. Biotechnol, 69(), 493-498,
4. Igloi GL,, Brandsch R, (2003): Sequence of the 165-kilobase catabolic plasmid pAO1 from Arthrobacter nicotinovorans and identification of a pAO1-dependent nicotine uptake system. J Bacteriol, 185(6),
1976-1986,
5. Mihasan M., Ungureanu E., Artenie V. (2007): Optimum parameters for overexpression of recombinat proteins from tac promotors on autoinducible medium. Roumanian Biotechnological letters, 12(6),
3473-3482,
6. Mihasan M, (2010) - In-silico evidence of a pAO1 encoded tagatose-derivate catabolic pathway in Arthrobacter nicotinovorans Biologia sect. Cellular and Molecular Biology, vol. 65 (5). p.760-768
7. Sambrook J, Fritsch EF, Maniatis T (1989): Molecular cloning - a laboratory manual, vol. III, Cold Spring Harbour Laboratory Press.
B i b l i o g r a p h y
Table 1. Oligo-nucleotides used for the isolation and cloning of orf40
Figure 2. Orf40 encoded protein was purified to homogenity.
M –Molecular Weight Marker Sigma Wide Range
1,2,3 – Purified protein 5, 10, 15 microg respectivelly)
M
1
2
3
55
45
kDA
C o f a c t o r
Figure 3. Determination of native molecular mass of ORF40 protein. 1.6 mg
purified ORF40 protein was injected on a HiLoad 16/60 Superdex 200 previosly calibrated using Blue-Dextran,
Feritine (440 kDa), Catalase (232 Kda), Aldolase (158 kDA), Albumine (67 kDa), Ovalbumine (43 kDa),
Ribonuclease (17.4 kDa).
Void Volume
ORF40 - 163 kDa
47 kDa
Shoulder at 405 nm
Figure 4. UV-Vis spectrum of the
purified ORF40 protein
Figure 1. General organisation of the putative carbohydrate
utilisation gene cluster from pAO1
Acknowledgements. This work was supported by CNCSIS-UEFISCSU, project number PN II- RU 337/2010.
www.bio.uaic.ro/cercetare/contracte/PD337-Mihasan/pd337.html
Table 2. Zn content in the analyzed samples