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Page 1: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Meta-Analysis

Page 2: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Meta-analysis of Single Word Reading (PET)

Meta-analysis and fMRI Comparison

Meta-analysis for literature review

Page 3: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

12 years of Single Word Reading Studies

Page 4: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Sources of Localization Variance

•  Resolution limitations of technique •  Different task parameters •  Analysis

– smoothing – motion correction, normalization algorithms – differences in analysis between studies

•  Inter-subject variability

Page 5: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Neuroimaging Meta-analysis

•  Re-analysis of previous findings •  Method of finding consistent activity

within the variance •  Used to answer two questions:

–  Is there a consistent difference between activation patterns for two tasks?

– What brain areas are consistently activated by a task?

Page 6: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Motor Areas of the Medial Wall Picard & Strick (1996)

Ant. Post.

29 studies

Page 7: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Visual Recognition of Words, Objects or Faces

Farah & Aguirre (1999)

“The only generalization that one can make… is that visual recognition is a function of the posterior half of the brain!”

20 studies

Page 8: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Single Word Reading Fiez and Petersen (1999)

Method: •  9 studies of overt single word reading •  Differing control conditions •  147 foci of activation •  Eliminate foci with neighbors (<20mm) from

fewer than half the studies •  Assign remaining foci to 18 clusters •  Find the mean location of each cluster

Page 9: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

18 Clusters: L IFG, Motor cortex, SMA, Anterior Cingulate, STG, L Fusiform G, L Lingual G, thalamus, CB

Single Word Reading Fiez and Petersen (1999)

Page 10: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Meta-analysis Design Goals

•  Maximize objectivity – Explicit inclusion criteria – Automated analysis technique

•  Maximize quantification – Unbiased localization – Level of consistency – Statistical analysis of consistency

Page 11: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Hypotheses Which brain areas have been consistently activated during

neuroimaging studies of word reading?

Ho: Activation in previous studies is inconsistent (i.e. random)

H1: Activation in previous studies is consistent (i.e. nonrandom clustering)

Page 12: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Meta-analysis Data

•  Task: Aloud Single Word Reading •  Criteria

– healthy adult subjects – standardized coordinate space – most basal control condition available

•  11 studies •  16 contrasts •  172 foci

Page 13: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Included Studies

Page 14: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Foci of Activation

172 Foci from 11 Studies

Page 15: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Modeling Localization Variance

X

Gaussian Probability Distribution

FWHM=14.2mm

Page 16: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

A 3-D Gaussian at (0,0,0)

Page 17: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Distributions can be summed

Page 18: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Methods

•  Move all foci into the same coordinate space (MNI-space)

•  Divide the space into 2mm cubic voxels •  Model the localization probability

distribution for each focus using a 3-D Gaussian (FWHM = 14.2mm)

•  For each voxel, find the union of the probability of localization for all foci

Page 19: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

3-D Probability Density Map

The value at each voxel is the probability that at least one focus in the data-set actually occurs within that voxel.

Max = 1.5%

A

R L

P

Page 20: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

The Null Hypothesis

•  Ho= Localization of foci is random •  represented by the 3-D probability

density map of a random data set •  1000 random sets of 172 foci were

analyzed •  A histogram of probability values was

created

Page 21: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Probability Values for Ho

Prob = 5.535x10-3 Corrected p = .05

Page 22: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

=Ho =Reading

noise

literature

Page 23: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Meta-Analysis Results

corrected p < .05

Turkeltaub et al. Neuroimage 16:765 (2002)

Page 24: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Meta-Analysis Results

Page 25: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Results Summary

Page 26: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Results Summary

Page 27: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Included Studies

Page 28: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Meta-analysis of Single Word Reading (PET)

Meta-analysis and fMRI Comparison

Meta-analysis for literature review

Page 29: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Problems Using fMRI in Language Studies

•  Unintended auditory system stimulation

•  Auditory stimulus masking

•  Task interference

•  Susceptibility artifacts from jaw movement

Page 30: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Data Acquisition Concurrent with Task

Data Acquisition

Task

Time

Hemodynamic Response

Page 31: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Hemodynamic Delay and Dispersion

Stimulus

Neuronal Response

Hemodynamic Response

Time

Page 32: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Data Acquisition After Task Completion

Data Acquisition

Task

Hemodynamic Response

Time

Page 33: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Behavior Interleaved Gradients

Task Epoch Control Epoch

task BIG

Conventional

gradients

Page 34: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

fixate read delete

+ rat rat

rat at

fixation reading

+ vocalization

Task

Stimulus

Response

Processes

Page 35: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

fixate (2 volumes)

DOG CAP HAT

rest 4 sec

read or delete (5 volumes)

BIG Image Data Acquisition

total of 62 volumes

+

task 9 sec

words fixation

19-34 group

Page 36: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

- 38 - 42 - 46

- 50 - 54 - 58

Sound Deletion

Page 37: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

•  15 adult subjects (10 female, 5 male) •  aloud single word reading (high freq., 1 syllable) vs.

fixation •  80 whole-head EPI volumes per condition •  BIG Technique •  Data analysis: head motion correction, global

intensity normalization, high-pass temporal filtering, spatial smoothing, and spatial normalization to MNI-Talairach space

•  Significance threshold set to match meta-analysis for number of significant voxels (Z score > 6.25)

fMRI Methods

Page 38: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Data Acquisition Details

•  BOLD-contrast using EPI

•  1.5 T system •  CP head coil •  TR 13 sec •  TE 40 ms •  3.0 mm3 voxels

Page 39: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

fixate read

+ rat

rat

fixation reading

+ vocalization

Task

Stimulus

Response

Processes

Page 40: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Meta-Analysis vs. fMRI Meta-analysis fMRI

Left

Hem

R

ight

Hem

Page 41: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Meta-Analysis vs. fMRI Meta-Analysis fMRI Meta-Analysis fMRI

Turkeltaub et al. Neuroimage 16:765 (2002)

Page 42: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Central Drift Artifact Deep voxels are surrounded in all directions by potential contributors

Cortical voxels have fewer neighbors: lower likelihood of high probability scores

Deeper voxels =

Higher scores

Page 43: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Central Drift Artifact

z=0

Page 44: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Distance Between Loci

Page 45: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Probability value vs. Z score

Page 46: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Values at Closest Peaks

Page 47: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Summary

•  Areas activated during single word reading: –  Primary Motor Cortex –  Superior Temporal Sulcus –  L Fusiform Gyrus –  Cerebellum –  Thalamus –  L Inferior Frontal Gyrus

•  Meta-analysis results were good predictors of location and level of fMRI activation

•  No Angular Gyrus activation

Turkeltaub et al. Neuroimage 16:765 (2002)

Page 48: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Meta-analysis of Single Word Reading (PET)

Meta-analysis and fMRI Comparison

Meta-analysis for literature review

Page 49: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

PURE TONES

CATEGORIES

NOISE

MUSIC

VOCAL SOUNDS

-14 -8 -2 5 11 17

Samson et al., Frontiers in Auditory Cognitive Neuroscience (2010)

Page 50: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Samson et al., Frontiers in Auditory Cognitive Neuroscience (2010)

L R

VOCAL SOUNDS INTELLIGIBLE SPEECH

(B)

-14 -8 -2 5 11 17

(A)

Page 51: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

(A)

(B)

CHANGING > UNCHANGING

MULTIPLE > SINGLE

(C)

-14 -8 -2 5 11 17

L   R  

Samson et al., Frontiers in Auditory Cognitive Neuroscience (2010)

Page 52: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Samson et al., Human Brain Mapping (2011)

Page 53: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Samson et al., Human Brain Mapping (2011)

Page 54: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Samson et al., Human Brain Mapping (2011)

Page 55: Clinical fMRI LEC24 Meta-analysis - Neurometrika · 2001. 10. 17. · Farah & Aguirre (1999) “The only generalization that one can make… is that visual recognition is a function

Meta-analysis of Single Word Reading (PET)

Meta-analysis and fMRI Comparison

Meta-analysis for literature review