chem 201/beauchamp topic 1: atoms,bonding,dipoles,ip, solvation 1...

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 1 Atomic Structure Since molecules are constructed from atoms, we will quickly review the structure of atoms. Volume of electron cloud compared to volume of nucleus V e V n 4 3 (1.33)(3.14)(100,000) 3 = 4 x 10 15 = = electron clouds determine the overall volume of atoms mass protons mass electrons 1800 1 protons and neutrons determine an atom's mass = e core e valence p,n 1 100,000 p = protons = constant # that defines the element n = neutrons = varies = defines the isotope e = electrons = varies, depending on bonding patterns a s s o c i a t e d t e r m if electrons = protons (same # of e's and p's) atom if electrons < protons (deficiency of e's) cation if electrons > protons (excess of e's) anion (e val ) = valence electrons = The outermost layer of electrons, which determines the bonding patterns. The usual goal is to attain a noble gas configuration. This is accomplished by losing e's (forming cations) or gaining e's (forming anions) or sharing e's (covalent bonds) (e core ) = core electrons = The innermost layer(s) of electrons (usually full shells or subshells). These e's are held too tightly for bonding (sharing) and not usually considered in the bonding picture. These e's cancel a portion of the nuclear charge (called shielding) so that the valence e's only see part of the nuclear charge, called Z effective . Z effective = (# protons) - (core e's) = the effective nuclear charge. This is the net positive charge felt by the valence e's (bonding and lone pairs). Z effective = same # as the column of the main group elements. nucleus r e r n 3 m p m e = What if you were the nucleus of an atom? Let’s assume you are 5 feet tall and weigh 100 pounds. The diameter of the electron cloud would be approximately 500,000 feet. Since there are about 5,000 feet in a mile the diameter would be about 100 miles (approximately the distance to San Diego). The volume would be (4/3)(π)r 3 , or about 500,000 miles 3 . Amazingly, the entire electron cloud would only have a mass of (1/1800)x100 pounds 1 ounce! 5 feet = d r = 2.5 feet volume = (4/3)()(r) 3 67 ft 3 100 lbs. = 1600 oz. d = (100,000) x (5 feet) = 500,000 feet 100 miles r = 50 miles volume = (4/3)()(r) 3 500,000 miles 3 mass 1 ounce If you were the nucleus electron cloud

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Page 1: Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 1 …psbeauchamp/pdf/314_topic_01_atoms_bonding_phy… · Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation

Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 1 Atomic Structure Since molecules are constructed from atoms, we will quickly review the structure of atoms.

Volume of electron cloud compared to volume of nucleus

VeVn

43 (1.33)(3.14)(100,000)3 = 4 x 1015= =

electron clouds determine the overall volumeof atoms

mass protonsmass electrons

18001

protons and neutronsdetermine an atom's mass=

ecore evalence

p,n

1

100,000p = protons = constant # that defines the elementn = neutrons = varies = defines the isotopee = electrons = varies, depending on bonding patterns associated termif electrons = protons (same # of e's and p's) atomif electrons < protons (deficiency of e's) cationif electrons > protons (excess of e's) anion

(eval) = valence electrons = The outermost layer of electrons, which determines the bonding patterns. The usual goal is to attain a noble gas configuration. This is accomplished by losing e's (forming cations) or gaining e's (forming anions) or sharing e's (covalent bonds)

(ecore) = core electrons = The innermost layer(s) of electrons (usually full shells or subshells). These e's are held too tightly for bonding (sharing) and not usually considered in the bonding picture. These e's cancel a portion of the nuclear charge (called shielding) so that the valence e's only see part of the nuclear charge, called Zeffective.

Zeffective = (# protons) - (core e's) = the effective nuclear charge. This is the net positive charge felt by the valence e's (bonding and lone pairs). Zeffective = same # as the column of the main group elements.

nucleus

rern

3

mpme

=

What if you were the nucleus of an atom?

Let’s assume you are 5 feet tall and weigh 100 pounds. The diameter of the electron cloud would be approximately 500,000 feet. Since there are about 5,000 feet in a mile the diameter would be about 100 miles (approximately the distance to San Diego). The volume would be (4/3)(π)r3, or about 500,000 miles3. Amazingly, the entire electron cloud would only have a mass of (1/1800)x100 pounds ≈ 1 ounce!

5 feet = dr = 2.5 feet

volume = (4/3)()(r)3 67 ft3 100 lbs. = 1600 oz.

d = (100,000) x (5 feet) = 500,000 feet 100 milesr = 50 miles

volume = (4/3)()(r)3 500,000 miles3

mass 1 ounce

If you were thenucleus

electroncloud

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 2 Effective nuclear charge - Zeffective is the net positive charge felt by the valence electrons (bonding and lone pair electrons). It can be estimated by subtracting the number of core electrons from the total nuclear charge.

=approximate positive charge felt by the valence electronsZeffective = (Ztotal) - (# core electrons)

Zeffective is an important parameter in determining how tightly an atom pulls electrons to itself and in determining the polarity of its bonds. Polarity is one of our more important concepts.

Problem 1 – What is the total nuclear charge and effective nuclear charge for each of the atoms below? How does this affect the electron attracting ability of an atom?

Ztotal

core electrons

=

H Li Na K B Al C Si N P O S F Cl Br I He Ne Ar

Zeffective ==

Problem 2 - Which atom in each pair below probably requires more energy to steal away an electron (also called ionization potential IP)? Why? Are any of the comparisons ambiguous? Why? Check your answers with the data in the I.P. table on page 5.

a. C vs N b. N vs O c. O vs F d. F vs Ne

Atomic Orbital - a region in space about an atom where there is a high probability of finding up to two electrons (2 e-). The shape of an orbital is predicted by the mathematics of quantum mechanics (we just need to know what the pictures look like). Where the electrons are is where the bonds will be. The bonds give rise to the shape and polarity of the molecule which in turn affects the chemistry we observe and study.

What do atomic orbitals look like?

a. s orbitals – are spherical in shape. The wave nature of electrons (phase) may change as the distance increases from the nucleus but at any fixed distance from the nucleus the phase nature of s electrons will be the same (think of layers on an onion). Nodes are regions in space where the probability of finding an electron is zero (the phase is zero).

b. p orbitals –have a dumbbell shape with two lobes at 180o to one another with opposite phase nature. All p lobes intersect at the nucleus with zero probability of finding any electron density (= node).

a single 2p orbital,has node at nucleus

all three 2p orbitals (2px, 2py, 2pz)are oriented at 90o to one another,represented as px, py and pz.

px

pz

py

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 3 c. d and f orbitals have more complicated shapes and are not important to beginning organic chemistry. However

they are important for understanding the inorganic world and many biochemical molecules involve the chemistry of d orbitals (like iron in hemoglobin, cobalt in vitamin b12, and zinc, copper, manganese and others in proteins.). We will not discuss these in our course.

lobes in the yz plane

lobes in the xz plane

lobes in the xy plane

lobes in the xy planealong axes

lobes along the z axis

x

y

zdyz dxz dxy dx2-y2 dz2

x x x x

y y y y

z z z z

We rarely have occasion to discuss d orbitals. They are helpful in discussions of sulfur, phosphorous and a few transition metals. Even in those discussions you canmainly look at them as biggerversions of p-like orbitals.

Part of the rest of the periodic table is shown below. Many of these elements are used in organic chemistry and biochemistry. We will use some of these in our discussions, though often only briefly.

H LiNa K RbCs

BeMgCaSrBa

ScYLa

TiZrHf

VNbTa

CrMoW

FeRuOs

CoRhIr

NiPdPt

ZnCdHg

BAlGaInTl

CSiGeSnPb

NPAsSbBi

OSSeTePo

FClBrIAt

1A 2A 3B 4B 5B 6B 8B 1B

MnTcRe

2B 3A 4A 5A 6A 7A7B 8A

CuAgAu

HeNeArKrXeRn

Usually = +1 +2 -2 -1 0? ? ?Transition elements tend to have severaloxidation states, mostly positive.

Elements on the left side and in the middle tend to lose electrons forming cations, while elements on the right side tend to gain electrons forming anions or to share electrons forming covalent bonds.Carbon, in the middle right, usually shares electrons in covalent bonds (single, double and triple).

A Noble gasconfiguration is the goal of most atoms.

Bonds represent an overlap of orbitals, which are a region where negative electron density is present. Electrons allow positive nuclei to remain in close proximity (come together). In our course covalent bonds will represent two shared electrons between two bonded atoms. We propose two types of covalent bonds: sigma, where electron density is directly between the two bonded atoms and pi, where electron density is above and below (or in front and in back) of a line connecting the two bonded atoms. Sigma bonds are always the first bond and pi bonds are the second (and third) bonds overlapping a sigma bond. Pi bonds are represented by sideways overlap of two p orbitals.

possible sigma bonds - the electron density is directly between the two bonded atoms,

always the first bond

ABA Hpi bonds - the electron density is above and

below the two bonded atoms(or in front and in back), none is directly between,

always second or third bonds

A B bond bond

bond

Atomic Configuration provides a representation of the electrons about a single isolated atom. Atoms represented are NOT in molecules. The usual atomic orbitals (s,p,d,f) are used and electrons fill into these atomic orbitals according to a few simple rules. The electrons closest to the nucleus are held the tightest and called the core electrons (full shells), while those in the incompletely filled outermost shell are called valence electrons. The valence electrons largely determine the bonding patterns and chemistry of the atom in order to gain a Noble gas configuration.

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 4

+z

nucleus

1s

2s 2p 2p 2p

3s 3p 3p 3p 3d 3d 3d 3d 3d

n=1 shelln=2 shell

n=3 shell

Electrons fill into atomic orbitals according to the following rules.

1. Pauli Exclusion Principle - only two electrons may occupy any orbital and those electrons must have opposite spins2. Hund's Rule - electrons entering a subshell containing more than one orbital (p,d,f) will spread themselves out over all of the available orbitals with their spins in the same direction until the final subshell is over half filled.3. Aufbau Principle - orbitals are filled with electrons in order of increasing energy (lowest PE to highest PE)

Periodic Table (another view) – Atomic orbitals (and electrons) are found in the following locations of the periodic table.

Elements in the upper right corner have the tightest hold on electronsbecause they have the largest Zeff (towards the right) and are closest to the effective nuclear charge (towards the top).

Elements in the lower left corner have the weakest hold on electronsbecause they have the smallest Zeff (towards the left) and are farthest fromthe effective nuclear charge(towards the bottom).

1s 1s

2s3s

4s5s

6s

7s

3d4d

5d

6d

2p

3p

4p5p

6p

7p

4f5f

Zeffective = +1 +2 +3 +4 +5 +6 +7 +8

n = 1n = 2n = 3

n = 4

n = 5

n = 6

n = 7

Problem 3 – Write an atomic configuration for H, B, C, N, O, F, Ne, S, Cl, Br, I.

Experimental evidence for an atom’s attracting power for electrons can be seen in a number of properties, such as ionization potential, atomic radius, ionic radius and others. A few examples are provided in the tables below.

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 5 1. Ionization potential as a measure of an atom’s electron attracting power.

Ionization potential is the amount of energy needed to remove an electron from an atom, molecule or ion and provides an experimental measure of an atom’s electron attracting power. An atom’s electron attracting power is a key idea in establishing the concept of polarity.

The curved arrows shown in the equation below may be new to you. In organic chemistry, we use curved arrows to show how key electrons change in a chemical reaction (it’s called arrow pushing). As electrons leave one location and move to a new location, curved arrows keep track of this movement. When you learn how to use curved arrows, you will understand, pretty well, how organic chemistry and biochemistry work. We will include curved arrows at every opportunity to maximize your exposure to these new tools. The half-headed arrow below in the following equation indicates single electron movement (less common for us). Later we will show two electron movement with full-headed arrows (more common for us).

Table 1 – First ionization potentials of atoms (energy to remove an electron from a neutral atom)

starting energy

final energy

H +314 (He) +568Li +124 Be +215 B +192 C +261 N +335 O +315 F +402 (Ne) +499Na +118 Mg +177 Al +138 Si +189 P +242 S +239 Cl +300 (Ar) +363K +99 Ca +141 Ga +138 Ge +182 As +226 Se +225 Br +273 (Kr) +323

Group 1A Group 2A Group 3A Group 4A Group5A Group 6A Group 7A Group 8A

Energy to ionize an electron from neutral atoms = IP1 (units are kcal/mole). Compare rows and compare columns.

Zeff = +1 Zeff = +2 Zeff = +3 Zeff = +4 Zeff = +5 Zeff = +6 Zeff = +7 Zeff = +8

Energy = Potential Energy

greater PE (less stable)

lower PE (more stable)

Ionization always has an energy cost to strip an electron from an atom.

ionization potential(kcal/mole)

Atom

electron is lost

Atom + electron

Atom

Atom e-

The general trend, across a row, is that the ionization potential gets larger and the hold on electrons is stronger. Why? The answer is found in the size of Zeffective. As we move from Li (IP1 = +124) to carbon (IP1 = +261) to fluorine (IP1 = +402), the valence shell stays the same (n = 2), but the effective nuclear charge holding those electrons keeps increasing, from +1 to +4 to +7. Because each extra electron goes into the same shell (n = 2), there is essentially no shielding of the nucleus by any of the additional electrons (the electrons are doing their best to avoid one another). It’s a lot harder to pull an electron away from a +7 charge than a +1 charge. It seems reasonable that fluorine has a stronger attraction for electrons than the other second row elements, even when those electrons are shared in a chemical bond. There are a few deviations that we will ignore.

In a column, all of the atoms have the same Zeffective. What changes in a column is how far away the valence electrons are from that same effective nuclear charge (Zeff). Valence electrons in inner quantum shells are held tighter because they are closer to same Zeff.

Problem 4 - Explain the atomic trends in ionization potential in a row (Na vs Si vs Cl) and in a column (F vs Cl vs Br).

Atomic radii and ionic radii also support these periodic table trends in electron attracting power. Smaller radii, below, indicate 1. a stronger contraction in the same row (shell) of the electron clouds due to higher Zeffective

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 6 attraction for the electrons and 2. in a column, closer distance of electrons to a particular Zeffective nuclear charge, due to electrons being in a lower principle quantum shell.

When an atom acquires a negative charge (becomes an anion), it expands its size due to the greater electron-electron repulsion. Remember, most of an atom’s mass is in the nucleus, but most of its size is due to the electron cloud.

Table 2

H = 53 He = 31Li = 167 Be = 112 B = 87 C = 67 N = 56 O = 48 F = 42 Ne = 38Na = 190 Mg = 145 Al = 118 Si = 111 P = 98 S = 88 Cl = 79 Ar = 71K = 243 Ca = 194 Ga = 136 Ge = 125 As = 114 Se = 103 Br = 94 Kr = 88Rb = 265 Sr = 219 In = 156 Sn = 145 Sb = 133 Te = 123 I = 115 Xe = 108

Neutral atomic radii in picometers (pm) = 10-12 m [100 pm = 1 angstrom]

3d elements4d elements

Problem 5 - Explain the atomic trends in atomic radii in a row (Li vs C vs F) and in a column (C vs Si vs Ge).

Table 3

Li = 90 Be = 59 B = 41 C = N = 132 O = 126 F = 119Na = 116 Mg = 86 Al = 68 Si = P = S = 170 Cl = 167 K = 152 Ca = 114 Ga = 76 Ge = As = Se = 184 Br = 182 Rb = 166 Sr = 132 In = 94 Sn = Sb = Te = 207 I = 206

Cations (on the left) and anions (on the right) radii in picometers (pm) = 10-12 m [100 pm = 1 angstrom]

3d elements4d elements

+1+1

+1+1

+2

+2

+2

+2

+3

+3+3

+3

-3 -2

-2

-2-2

-1-1

-1-1

cations anions Problem 6 - In the tables above:

a. Explain the cation distances compared to the atomic distances (Li, Be, B). (Tables 2 and 3) b. Explain the anion distances compared to the atomic distances (N, O,F). (Tables 2 and 3) c. Explain the cation distances in a row (Li, Be, B). (Table 3) d. Explain the anion distances in a row (N, O, F). (Table 3)

Atoms behave differently in bonding situations when attempting to acquire a Noble gas configuration (ionic, polar covalent and pure covalent). This is often described as the “octet rule,” (8 valence electrons) for main group elements (1A through 8A). Almost always true for second row elements (exceptions possible for higher rows).

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 7

Electronegativity measures the attraction an atom has for electrons in chemical bonds. There are many proposed scales to do this, we will use the Pauling scale. The larger the number the greater is the attracting power of an atom for the electrons in chemical bonds. Electronegativity will determine nonpolar, polar and ionic characteristics of bonds, and when shapes are included it determines the same attributes in molecules. Compare rows and compare columns in the following table. The largest numbers are found in the upper right corner (strongest attraction for electrons) and the smallest numbers are found in the lower left corner (weakest attraction for electrons). Group 8A elements don’t have a value listed because the ones toward the top don’t make bonds.

(chi) is the symbol used for electronegativity, which is the property the indicates an atoms attraction for electrons in chemical bonds with other atoms.

H = 2.2Li = 1.0 Be = 1.5 B = 2.0 C = 2.5 N = 3.0 O = 3.5 F = 4.0 He = noneNa = 0.9 Mg = 1.2 Al = 1.5 Si = 1.9 P = 2.2 S = 2.6 Cl = 3.2 Ne = noneK = 0.8 Ca = 1.0 Ga = 1.6 Ge = 1.9 As = 2.2 Se = 2.5 Br = 3.0 Ar = noneRb = 0.8 Sr = 0.9 I = 2.7 Kr = 3.0

Approximate electronegativity values for some main group elements.

Simplistic estimate of bond polarities using differences in electronegativity between two bonded atoms.

0.4 0.4 < < (1.4 - 2.0)(1.4 - 2.0) <

considered to be a pure covalent bond (non-polar)considered to be a polar covalent bond (permanent charge imbalance)considered to be an ionic bond (cations and anions)

3d elements4d elements

Group 1AZeff = +1

Group 2AZeff = +2

Group 3AZeff = +3

Group 4AZeff = +4

Group 5AZeff = +5

Group 6AZeff = +6

Group 7AZeff = +7

Group 8AZeff = +8

BA A B =bond polarity based on

Depending on the magnitude of the difference in electronegativity between the bonded atoms, we can classify the polarity or charge separation, qualitatively, as nonpolar bonds (electrons are shared and there is no, or only a slight difference in electronegativity), as polar bonds (electrons are shared and there is a moderate difference in electronegativity) or as ionic bonds (electrons are completely transferred from one atom to another when there is a large difference in electronegativity). One arbitrary calculation used for making these distinctions is shown below. We will use this calculation to qualitatively classify bond polarity, even though many exceptions are known.

Example: Classify each type of bond below as ionic, polar covalent or pure covalent.

CH

H

H

O Na

aXH - XC = 2.2 - 2.5= 0.3 = pure covalent bond

bXC - XO = 2.5 - 3.5= 1.0 = polar covalent bond

cXO - XNa = 3.5 - 0.9= 2.6 = ionic bondrewrittenas ionic

CH

H

H

O Na

a b c

Problem 7 Classify each bond type below as pure covalent, polar covalent or ionic according to our simplistic guidelines above. If a bond is ionic, rewrite it showing correct charges.

CC NC OC FC BrC

HC O H C C C CF HClNa

BrMgBr

a b c d e f

g h i j k l

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 8

ClC

N H

C N C NC O ONa H

m n o p q r

ON

s

LiN

t

OO OCl

u v

NaN

w

Elemental hydrogen, fluorine, oxygen and nitrogen are examples of atoms sharing electrons evenly because the two atoms competing for the bonded electrons are the same. Each line drawn between two atoms symbolizes a two electron bond. These examples also illustrate that pure covalent bonding can occur with single, double and triple bonds and shows that some elements have lone pairs of electrons.

H H OO NNhydrogen molecules with a

single bond, each H has a duet of electrons (like helium)

oxygen molecules with a double bond, each O has an octet

of electrons (like neon)

nitrogen molecules with a triple bond, each N has an octet

of electrons (like neon)

F Ffluorine molecules with a

single bond, each F has a octetof electrons (like neon)

If the two bonded atoms are not the same, then there will be different attractions for the electrons. One atom will have a greater pull for the electrons and will claim a greater portion of the shared electron density. This will make that atom polarized partially negative, while the atom on the other side of the bond will be polarized partially positive by a similar amount. Because there are two opposite charges separated along a bond, the term “dipole moment” () is used to indicate the magnitude of charge separation. Bond dipoles depend, not just on the amount of charge separated, but also the distance by which the charges are separated, as indicated by their bond lengths. Due to the limited time available in our course we will not explore this relationship beyond using the dipole moment () as a qualitative measure of bond or molecule polarity (when 3D shape is also considered).

The symbols + and - represent qualitative charge separation forming a bond dipole. Alternatively, an arrow can be drawn pointing towards the negative end of the dipole and a positive charge written at the positive end of the dipole.

A B A B

d d

+ -

or...........

Two qualitative pictures of a bond dipole are represented below. B is assumed to be more electronegative than A.

bond =amount of charge separated

x distance between charges in cm

= units of Debye (D = 10-18 esu-cm)

bond = ( e ) x ( d ) = bond dipole moment

e = electrostatic charge (sometimes written as q)

d = distance between the opposite charges

The absolute value of a unit charge on an electron or proton is 4.8x10-10 esu

This is often given in angstrums (A = angstrum), but converted to cm for use in calculations (1A = 10-8 cm)

A>B

Because there are two factors that make up bond dipole moments (charge and distance), bonds that appear to be more polar based on electronegativity differences might have similar dipole moments if they are shorter than less polar bonds. The methyl halides provide an example of this aspect. Fluoromethane has a more polar bond, but shorter bond length, while iodomethane has a less polar bond, but longer bond length. The opposing trends of the

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 9 halomethanes produce similar dipole moments in all of the molecules. Polarity, polarizability and shape have a large influence on physical properties (mp, bp, solubility, etc). We will briefly review these below.

CH3-F 1.86 D139 pm

1.87 D178 pm

1.81 D193 pm

1.62 D214 pm

mp (oC) bp (oC)

-97 -24

-78-142

-94 +3

-66

3.97 g/dm3 (gas)

density

0.53 g/dm3 (gas)

0.92 g/dm3 (gas)

+42

CH3-Cl

CH3-Br

CH3-I 2.28 g/mL (liquid)*

CF = 1.5

CF = 0.7

CF = 0.5

CF = 0.2

dC-X molecule

= dipole mement (measure of polarity)

d = bond distance in picometers (10-12 m)

H = 2.2 C = 2.5 N = 3.0

Cl = 3.2 Br = 3.0 I = 2.7

electronegativity

F = 4.0

O = 3.5

* Notice there is a different phase.

H-F 1.86 D92 pm

H-Cl 1.05 D127 pm

H-Br 0.82 D141 pm

H-I 0.38 D161 pm

-114 -85

+20-84

-87 -67

-35-51

dX-H

2.85 g/mL (liquid)*

mp (oC) bp (oC) density

1.15 g/dm3 (gas)

1.49 g/dm3 (gas)

F-H = 1.8

Cl-H = 1.0

Br-H = 0.8

I-H = 0.5

3.31 g/dm3 (gas)

molecule

* Notice there is a different phase.

* Notice there is a different phase.

CH4 0.00 D

dX-H

109 pm

NH3 1.42 D102 pm

H2O 1.85 D96 pm

H-F

-78 -33

-164-182

0 +100

1.86 D92 pm -84 +20 0.99 g/mL (liquid)*

1.00 g/mL (liquid)*

molecule mp (oC) bp (oC) density

0.66 g/dm3 (gas)

0.73 g/dm3 (gas)

CH = 0.3

NH = 0.8

OH = 1.3

FH = 1.8

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 10 Types of Bonding

Ionic bonding

The elements at the edges of the periodic table tend to lose or gain valence electrons, depending on which side they are. A complete transfer of electrons forms ions (cations lose electrons and anions gain electrons). Neutral salts require charge balance: (total negative charge) = (total positive charge), so that the net charge is zero.

If one were to mix diatomic chlorine gas, Cl2, with metallic sodium, Na, quite likely an explosion would occur in a violent transfer of electrons. Both elements are dangerously reactive. The metallic sodium atoms would give up their electrons to the chlorine diatomic molecules, breaking the covalent bond between the chlorine atoms. In so doing, each element would attain the desired Noble gas configuration as oppositely charged ions and a large amount of energy would be released (the lattice energy), as the reaction is very exothermic. The metallic lattice structure of sodium atoms would disintegrate and the gaseous chlorine would disappear. The ions formed would surround themselves with opposite charge and avoid similar charge, forming an ionic lattice of table salt. There is a dramatic change in physical and chemical properties when this reaction occurs (e.g. mp, bp, water solubility, etc.).

Na

Na

ClClNa

NaCl

table salt lattic structure,both Na and Cl ionsattaine a Noble gas configuration

"explosion?"with transfer of electrons Cl

= a b_ = 3.2 - 0.9 = 2.3

Na (metal)mp = 98oCbp = 883oC

NaCl (salt)mp = 801oCbp = 1413oC

Cl2 (gas)mp = -101oCbp = -35oC

Our arbitrary rules classify this difference in electronegativity as ionic.

(curved arrows show electron movement)

Ionic substances, in general, tend to have “omni directional bonding” (omni = “all”), which tends to produce strongly bonded lattice structures that are difficult to break down, leading to very high melting and boiling points. Sometimes the temperatures are too high and the salt decomposes instead of melting or boiling. There are many types of lattice structures, depending on the size of the charges and the size of the ions. We will simplistically represent all ionic substances with the figure below.

Each ion is surrounded on many sides by oppositely charged ions. To introduce the disorder of a liquid (melt) or a gas (boil) requires a very large input of energy (mp indicates the amount of energy required to break down the ordered lattice structure and boiling point indicates the amount of energy required to remove an ion pair from the influence of all neighbors. Ionic bonds (ionic attractions on all sides) can only be bronke at great expense in energy.

Lattic structure - depends on the size and charge of the ions.

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 11 Ion-Ion interactions – There are very strong forces of attraction between oppositely charged ions. The melting points of ionic salts are typically very high. The solubility of many salts in water is often high because water has a concentrated partial positive end (the protons) that can interact strongly with anions and a concentrated partial negative end (the oxygen) that can interact strongly with cations, leading to very high overall solvation energies. However, solvation energy has to be larger than the very large lattice energy (energy of the cations interacting with the anions) or the salt will not dissolve.

Each type of ion is typically surrounded on all sides by oppositely charge ions in some sort of lattice structure. Before a solid can melt the whole network of ions has to break down.

Al+3

Be+2

NH4

K

Li

Na

O-2

846 / 1717sol. = 1.3g= 3.0nD=1.392

610 / 1383sol. = 550g= 2.2nD=1.662

550 / 1289sol. = 1670g=2.0

nD=1.784

467 / 1178sol. = 1510g=1.7

nD=1.995

ClF Br I NO3 N3

255 / 873sol. = 900g=?

nD=1.735

Ag

996 / 1787sol. = 404g= 3.1nD=1.336

858 / 1517sol. = 920g= 3.2

nD= ?

435 / 1151sol. = 1800g= 2.1

nD= ?

801 / 1465sol. = 359g= 2.3nD=1.544

747 / 1447sol. = 905g= 2.1nD=1.646

660 / 1304sol. = 1840g=1.8

nD=1.775

308 / 380dec

sol. = 730g=?

nD=1.587

275dec / -sol. = 410g=2.1nD= ?

996 / 1787sol. = 344g= 2.4nD=1.490

734 / 1435sol. = 678g= 2.2nD=1.559

681 / 1345sol. = 1400g=1.9

nD=1.677

334 / 400dec

sol. = 316g=?

nD=1.506

350dec / -sol. = 508g=2.2nD= ?

455 / 1547sol. = 0.005g= 1.3nD=2.071

432 / 1502sol. = 0g= 1.1nD=2.253

558 / 1506sol. = 0g=0.8nD= ?

212 / 444sol. = 2160g

=?nD=1.744

160 / ?soluble=1.5nD= ?

564 / 1496sol. = 480g=1.6

nD=1.452

634 / 1625sol. = 715g=1.7

nD=1.410

NC

250explodes / -sol. = 0= ?nD= ?

335dec / -sol. = 0= ?

nD= 1.685100dec / -sol. = 453= ?nD= ?

338dec / -sol. = 372= ?

nD= 1.642

255 / 452sol. = 783= ?

nD= 1.712

551sub / -sol. = 1720= ?nD= ?

notfound

170 / 210dec

sol. = 1500= ?nD= ?

160 / 400dec

sol. = ?= ?nD= ?

- / 36sol. = v. sol.= ?nD= ?

N-3

Mg+2

Ca+2

554 / 1169sol. = v.sol.= 2.5

nD= ?

399 / 482sol. = 151= 1.7

nD= ?

508sub / -sol. = v.sol.= 1.5

nD= ?

480 / 590sol. = explodes

= 1.2nD= ?

637dec / -sol. = 1480= 1.5

nD= ?

714 / 1412sol. = 543= 2.0nD= 1.675

711dec / -sol. = 1020= 1.8

nD= ?

1263 / 2260sol. = 0.13= 2.8nD= 1.675

1418 / 2533sol. = 0.01= 3.0nD= 1.434

772 / 1935sol. = 745= 2.2nD= 1.52

730 / 1935sol. = soluble= 2.0

nD= ?

779 / 1100sol. = 660= 1.7

nD= ?

60 / 142dec

sol. = 1660= ?nD= ?

129hydrate / -sol. = 1250= ?

nD= 1.34

561dec / -sol. = 1212= ?nD= ?

notfound

notfound

notfound

notfound

notfound

640dec / -sol. = soluble= 1.5

nD= ?

1291 / ?sol. = 7= 2.5

nD= ?

192 / ?sol. = 460= 1.7

nD= ?

98 / 265sol. = reacts= 1.5

nD= ?

189 / 360sub

sol. = reacts= 1.2

nD= ?

73 / 135dec

sol. = 734= ?

nD= 1.54

notfound

notfound

1570 / 2563sol. = reacts=2.5

nD=1.644

1132 / 1950dec

sol. = reacts=2.6nD= ?

>300dec / -sol. = reacts=2.7nD= ?

280dec / -sol. = 0.2=1.6nD= ?

notfound

2907 / 3500sol. = ?= 2.0nD= 1.7

2852 / 3600sol. = 0.01= 2.3nD= 1.736

2572 / 2850sol. = 1= 2.5

nD= ?

2072 / 2977sol. = 0= 2.0nD= 1.76

813 / ?sol. = reacts=2.5nD= ?

unstable

notfound

explosive

notfound

2200 / 2240dec

sol. = soluble=1.5nD= ?

1500 / ?sol. = ?=1.8nD= ?

1195 / ?sol. = reacts=2.0nD= ?

2200 / 2517sol. = reacts= 1.5

nD= 2

The first number is the melting point and the second number is the boilingpoint (in oC).

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 12 Problem 8 - Predict the formula for the combination of the following pairs of ions. What kinds of melting points would be expected for these salts?

  F NO2 NO3 O -2 HCO3 PO4 -3

K

Ba+2

Zn+2

Al+3

CO3-2

Covalent Bonding (Molecules)

A single neutral hydrogen atom would have a single valence electron. This is not a common occurrence in our world because such a hydrogen atom would be too reactive. However, if one were able to generate a source of hydrogen atoms, they would quickly join together in simple diatomic molecules having a single covalent bond with the two hydrogen atoms sharing the two electrons and attaining the helium Noble gas configuration (duet rule). Such a reaction would be very exothermic.

= a b_ = 2.2 - 2.2 = 0

H H HH

The line symbolizes a two-electron, pure-covalent bond based on the calculation below.

If two hydrogen atoms should find one another, they wouldfrom a diatomic molecule with a tremendous release of energy,about 104 kcal/mole.

H = -104 kcal/mole

The atoms of organic chemistry, H, C, N, O, S and halogens, tend to attain a Noble gas configuration by sharing electrons in covalent bonds of molecules. Simple formulas often have only one choice for joining the atoms in a molecule (CH4, NH3, H2O, HF). As the number of atoms increase, however, there are many more possibilities, especially for carbon structures (sometimes incredible numbers of possibilities, C40H82 > 62 trillion isomers!). These possibilities may require single, double and/or triple bonds (sigma and pi bonds will be discussed soon), in chains or rings of atoms. Carbon, nitrogen, oxygen and fluorine can be bonded in all combinations, according to their valencies. We study most of the bond types below.

C

H

H

H

H NH

H

H OH H FH

= a b_

= 2.5 - 2.2 = 0.3

pure covalent bond based on the

calculation below

= a b_

= 3.0 - 2.2 = 0.8

polar covalent bond based on the

calculation below

= a b_

= 3.5 - 2.2 = 1.3

polar covalent bond based on the

calculation below

= a b_

= 4.0 - 2.2 = 1.8

polar covalent bond based on the

calculation below

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 13

C

H

H

H

H C

H

H

H

C

H

H

H

C

H

H

H

N H

H

C

H

H

H

O

H

C

H

H

H

F

N

H

H N H

H

OH N H

H

OH O H NF

F

F O

F

F

single bonds - many types and possibilities

a b c d e

f g h i j

C C

H

H

H

H

C N

H

H

H

C O

H

H

N O

H3C

N N

H

H

O O

double bonds - many types and possibilities

two double bonds - many types and possibilities

C C

H

H

OC C

H

H

C

H

H

O C OC C

H

H

N

H

k l m no p

q r st

C C HH C NH N N

triple bonds - many types and possibilities

C C HC

H

H

H

C NC

H

H

H

rings - many types and possibilities

H2C

H2CCH2

NH

H2C

H2C

H2C

CH2

CH2

CH2

CH2

H2C

H2C

H2C

O

C C

C

CC

C

HH

H

H

H

H

C O

u v w x y z

aa bb cc dd

Problem 9 – Supply dipole arrows to any polar bonds above (according to our arbitrary rules). Make sure they point in the right direction.

Carbon tends to share electron density with 2-4 atoms to form its octet. Bond energies to carbon also tend to be strong, which leads to an infinite variety of possible stable chains and stable rings with itself and other atoms. Hydrogen and the halogen atoms only form one bond with carbon, when they are present, and are found covering the surface of the chains and rings (they are like the skin of a molecule). Oxygen atoms and nitrogen atoms, on the other hand, form two and three bonds, respectively. They can be found in the interior of chains and rings or on the surface of chains and rings. The physical properties (mp, bp, solubilities, etc.) of molecular substances are very different from ionic substances. The strong attractions in covalent bonds do not change when a substance melts or boils since none of those bonds break. In contrast to ionic salts, there are much weaker forces that attract one molecule to another in covalent substances.

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 14 Melting Points (what are they?)

Compact regular shaped molecules pack together more efficiently, typically having closer contacts and forming stronger lattice structures than irregular shaped molecules. Well ordered lattice structures tend to have higher melting points, when other factors are similar. There is not a large difference in the forces of interaction in the solid versus the liquid phases because the molecules are close together in both. Typically, about one out of ten molecules leaves its lattice position open in a liquid. This allows greater mobility for the molecules in a liquid than in a solid. It also expands the volume slightly so that liquids, in general, are less dense than the solid phase. Normally solids sink to the bottom when both liquid and solid are together. We will judge melting points mainly on the symmetry of the lattice structures. More symmetrical molecules often form a more compact lattice structure which allows closer contact and stronger intermolecular forces of interaction, requiring more energy to break down and thus, a higher melting point.

Fortunately for us, water is an exception to the general observation that solids sink. Instead of ice sinking in water, it floats. Because of hydrogen bonding, ice (solid water) expands and is less dense than liquid water. If that weren’t the case, the earth would be a giant ice cube. What would happen to all of our flowing water? Every summer a little water would form on the top and the rest would remain a big iceberg on the bottom. That would be a big problem for living creatures and life as we know it.

Boiling Points (what are they?)

Gas molecules, on the other hand, behave independently of one another having extremely weak intermolecular forces. In fact, the ideal gas law assumes there are zero forces of interaction in the gas phase (PV = nRT). The boiling point is an indication of how much energy it takes to completely separate one molecule from all of the other molecules in the liquid phase. A boiling point is an excellent indicator of the strength of interactions among the molecules. This is NOT the same as the attraction of atoms for the electrons in bonds, which significantly determines the bond energy between two atoms. More polar molecules require more energy to boil (higher bp) because each molecule has a stronger attraction for its neighbor molecules. Also, a greater accumulation of any particular type of force requires more energy to overcome the greater forces of attraction (= higher bp).

(strong forces of interaction) (very weak forces of attraction)

melting point

boiling point

Similar forces of interaction are present in solides and liquids, so the phase change is not too helpful is seeing how strong they are.

Drastically different forces of interaction between liquid molecules and gaseous molecules, so the phase change is very helpful for seeing how strong they are.

Melting points are harder to predict because shape is important in determining how efficiently molecules pack together in the lattice structure (how close they can get to one another). More symmetric structures tend to pack more compactly and have, relatively, higher melting points.

Solids have close packing with an ordered, rigid lattice. Intermolecular forces are at a maximum and require energy to break down the lattice network.

In a liquid about 1 out of 10 molecules is displaced from the solid's lattice structure. This allows mobility and flow as the "holes" move around. The forces of intereaction are similar to the solid, but the density tends to be lower than solid (water is an exception).

Solid Liquid

In an "ideal" gas, molecules have no interactions with neighbor molecules because they are too far apart (thus the ideal gas law, PV = nRT). The amount of energy to boil a liquid is an indication of the strength of the forces of interaction in the liquid phase (as indicated by the boiling point). A higher boiling pointindicates stronger forces of attraction in the liquid phase.

(strong forces of interaction)

Gas

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 15 Types of Intermolecular Forces of Attraction

A variety of examples is shown in the table below, from completely nonpolar to ionic. The physical properties change greatly, depending on the overall intermolecular forces of attraction (generally, ionic > polar > nonpolar).

Examples Mol. Wt. Melting point (oC) Boiling point (oC)NaCl (ionic) 58.4 +801 +1465 (ionic salt)LiF (ionic) 25.9 +845 +1676 (ionic salt)H-H 2.0 -259 -253CH4 16.0 -182 -164 NH3 17.0 -78 -33 H2O 18.0 0 +100 HF 20.0 -183 +20 CH3CH3 30.0 -183 -89 CH3NH2 31.0 -94 -6 CH3OH 32.0 -98 +65 CH3F 34.0 -142 -78 Absolute zero = 0 K = -273oC

molecularsubstances

T = 131oC

T = 133oC

T = 80oC

Often when we see a series of numbers, such as the temperatures in the above table, our eyes glaze over and we move on to the next blurry group of words. But this time, let’s do a thought experiment to give those temperatures more meaning. Let’s fill two imaginary pots with water. One we merely set in front of us and one we put over our imaginary stove burner and bring to a boil. The pot in front of us, at room temperature, is about 25oC, while the pot boiling on the stove is about 100oC, a mere 75oC higher. Now for the thought experiment: stick your imaginary hand into each of the pots of water. What? You say I’m crazy? You know that 75oC is a huge difference in temperature. The imaginary cold water does nothing to your imaginary hand, while the imaginary boiling water cooks it. If you want to try this as a real experiment, substitute a real hot dog for your imaginary hand. Now, think about what the much larger differences in temperature in the table above are telling us while you are eating your real hot dog.

1. Ion-Ion interactions – There are very strong forces of attraction between oppositely charged ions, already discussed above. The melting points of ionic salts are typically very high.

2. Dispersion forces / van der Waals interactions / London forces (nonpolar attractions)

Most of the examples in the table are gases at room temperature, an indication that there are no strong forces of interaction between the molecules. However, clearly there is some attraction between the molecules, because at room temperature bromine is a liquid and iodine is a solid, and ultimately each gaseous substance in the table does condense to a liquid and solidify to a solid. Also there is quite a range of differences in melting and boiling points among the different compounds.

Substance 2 -259 -253 0.0 gas 28 -210 -196 0.0 gas 32 -218 -183 0.0 gas 38 -219 -188 0.0 gas 71 -101 -35 0.0 gas 160 -7 + 59 0.0 liquid 254 +114 +184 0.0 solid

H HN N

O OF F

Cl ClBr Br

I I

MW (g/mol)

mp (oC)

bp (oC)

DipoleMoment ()

Phase at room temperature

puzzle?

A plot of the trends in melting points and boiling points in the halogen family and Nobel Gas family helps us to see the differences more clearly (below). The difference melting and boiling points show there are differences in the forces of attraction between the halogen molecules even though all of the molecules are nonpolar. Bromine is even a

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 16 liquid and iodine a solid at room temperature. The higher boiling points (I2 > Br2 > Cl2 > F2) are due to greater polarizability of the larger atoms, where the electrons are held less tightly.

Temp. (oC)

200

150

100

50

0

-50

-100

-150

-200

-250

250

F2

Cl2

Br2

I2

bp

mp

The halogen molecules are similar in shape and nonpolar. There is a smooth, increasing trend in both melting and boiling points. This is suggestive of some factor increasing the forces of attraction between molecles of the halogen family as they get larger. The smooth trend in melting point is not typical, because it can vary so much with differences in shapes. The even change in melting points is observed here because the halogen molecules all have a similar, rigid shape.

Phase at room temperatureF2 = gas He = gasCl2 = gas Ne = gasBr2 = liquid Ar = gasI2 = solid Kr = gas

-273 absolute zero = 0 K

He

Ne

Ar

Kr

The Noble gas molecules are similar in shape and nonpolar. There is a smooth, increasing trend in both melting and boiling points. This is suggestive of some factor increasing the forces of attraction between molecles of the halogen family as they get larger. The smooth trend in melting point is not typical, because it can vary so much with differences in shapes. The even change in melting points is observed here because the halogen molecules all have a similar, spherical shape.

bpmp

room temp 25oC

Dispersion forces are temporary fluctuations of negative electron clouds from one direction to another, relative to the less mobile and more massive positive nuclear charge. These fluctuations of electron density induce fleeting, weak dipole moments. Polarizability is the property that indicates how well this fluctuation of electron density can occur about an atom. Within a column (same Zeff), larger atoms are more polarizable, because they do not hold as tightly to their valence electrons as smaller atoms, since the electrons are farther away from Zeff. Thus, atoms lower in a column are more polarizable than atoms higher up. In a row it’s harder to predict. Atoms to the right have a larger Zeff which should make them less polarizable, but it might seem that lone pairs are held less tightly by only one atom, instead of two atoms in a bond. However, fluorine is not very polarizable (it holds on very hard to even its lone pairs) and appears to indicate that larger Zeff is more important. Picture a cotton ball (polarizable electron clouds = sticky) and a marble (nonpolarizable electron cloud = not sticky).

+Z

In a nonpolar molecule the and are centered, on average. This would seem to indicate that in nonpolar molecules there is no polarity or attraction between molecules. So why do such substances liquify and solidify? Why aren't they always gases?

+Z +Z +Z

+ - + -

and are not centered creating tempory polarity.

Weak, fluctuating polar forces of attraction between molecules.

Fast moving electrons shift position relative to slow moving nuclei, creating a temporary imbalance of charge,

which induces a similar distortion of the electron clouds in neighbor structures and a weak attraction for neighbor molecules.

+Z = nuclear protons = electron cloud

Dispersion Forces

The simplest molecules we can study are diatomics (two atom molecules). While the examples in the table above are not organic molecules, they are simple and we can use this simplicity to learn important ideas that apply to organic molecules. Simple diatomic molecules must have a linear geometry, since two points determine a straight line. When

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 17 both atoms are the same, the bonding electrons must be shared evenly. There can be no permanent distortion of the electron clouds toward either atom, so there are no polar bonds.

Zeff = +4 Zeff = +5 Zeff = +6 Zeff = +7

C N O F

Cl

Br

I

Zeff = +7

Zeff = +7

Zeff = +7

Polarizability is greater because there is a weaker hold on the electrons because they are farther away from the same effective nuclear charge, so they are more easily distortable.

Periodic trends in polarizability, .

Features that increase polarizability:

1. smaller Zeff, favors C > N > O > F

2. valence electrons farther from the nucleus when Zeff is similar I > Br > Cl > F.

Polarizability is larger with smaller Zeff because the electrons are not held as tightly, so they are more easily distortable.

Dispersion forces are cumulative, so when the contact surface area is larger, the interactions are stronger

(because there are more of them). Higher molecular weight alkanes have more carbon atoms to interact than lower molecular weight alkanes (even though only similar weak dispersion forces are present in both).

Alkane boiling pointmethane, CH4 -162ethane, C2H6 -89propane, C3H8 -42butane, C4H10 0pentane, C5H12 36hexane, C6H14 69heptane, C7H16 98octane, C8H18 126nonane, C9H20 151decane, C10H22 174undecane, C11H24 196dodecane, C12H26 216

Alkane boiling pointtridecane, C13H28 235tetradecane, C14H30 254pentadecane, C15H32 271hexadecane, C16H34 287heptadecane, C17H36 302octadecane, C18H38 316nonadecane, C19H40 330icosane, C20H42 343henicosane, C21H44 356doicosane, C22H46 369tricosane, C23H48 369 triacotane, C30H62 450tetracotane, C40H82 563

CH4

CH3CH2CH2CH2CH2CH3

CH3CH2CH2CH2CH2CH3

CH4

CH3CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH3

CH3CH2CH2CH2CH2CH2CH2CH2CH2CH2CH2CH3

Larger molecules have more contact surface area with neighbor molecules. Greater dispersion forces mean a higher boiling point.

-150

-100 -50

0 50

100

150

200 250

300

350

C1 C2 C3 C4 C5 C6 C7 C8 C9 C10 C11 C12 C13 C14 C15 C16 C17 C18 C19 C20

Boiling PointTemp (oC)

Straight chain alkanes

From the examples above, you can see that even the weak dispersion forces of attraction become significant when a large number of them are present.

bp of water

mp of water

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 18

In alkane isomers (having the same number of atoms, CnH2n+2), more branching reduces contact with neighbor molecules and weakens the intermolecular forces of attraction. Linear alkanes have stronger forces of attraction than their branched isomers because they have a greater contact surface area with their neighbor molecules. Branches tend to push neighbor molecules away. This is very evident in boiling points, where all of the forces of attraction are completely overcome and the linear alkane isomers have higher boiling points (stronger attractions) than the branched isomers. The strength of these interactions falls off as the 6th power of distance. A structure twice as far away will only have 1/64 the attraction for its neighbor.

More atoms increase the contact surface area with neighbor molecules (not isomers).

Less branching increases contact surface area with neighbor molecules in these isomers.

H2CH3C

H2CH3C

H2C CH3

CH

CH3

H3C CH3bp = -42oC bp = -0.5oCbp = -12oC

CH311

1

12

164

=

=

6

6

H2CH3C

H2C CH3

bp = -0.5oC

Melting points are not so predictable because there is not much difference in forces of interaction in solids and liquids, because molecules are close to one another in both. The strength of the lattice structure is the major factor in determining melting points because it determines how close the molecules can get to one another. Highly symmetrical, rigid shapes tend to pack together more efficiently (more closely) than unsymmetrical, flexible molecules and have higher melting points.

100oC

90oC

80oC

70oC

C7 boilingpoints

81

94

81

90

86

79

92

98

90

-25oC

-50oC

-75oC

-100oC

-125oC

-150oC

C7 meltingpoints

-24

-119 -119

-134

-124-119

-91

-118

100oC break in temperature

?

A particularly dramatic example of how different melting points can be, in very similar structures, is found in two isomers of C8H18. Both of these hydrocarbons are nonpolar molecules. Only C-C and C-H bonds are present. Dispersion forces are the primary means of interaction with neighbor structures. The first example is octane (bp = 126oC) and the second example is highly substituted 2,2,3,3-tetramethylbutane (bp = 106oC).

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 19

150oC

100oC

50oC

0oC

-50oC

Temp(oC)

More efficient packing in lattice structure due to compact rigid shape = closer contact(higher mp).bp = +106

mp = +101

bp = +126

mp = -57

Stronger dispersion forces because of greater surface contact area in linear chain (higher bp).

25oC

100oC

room temp water

boiling water

hot dog?

your finger?T = 75oC

Both molecules look symmetrical, as drawn. However, octane is like a wet piece of spaghetti and can assume all

sorts of irregular shapes, while 2,2,3,3-tetramethylbutane has, essentially, only one shape. Its highly compact and regular cylinder shape produces a very efficient packing arrangement that is hard to alter. The symmetrically branched isomer melts at a much higher temperature. Possible shapes are shown below for each of the structures.

CH2H3C

CH2H2C

H2CH2C CH2

CH3

H2C

H3C

CH2

H2CH2C CH2

H2C CH3 CH2

CH3

CH2H2C

H2C CH2 CH2

CH3

CH3H2C

CH2H2C

H2C CH2

H2C CH3

H2C

H3C CH2

H2C

CH2

H2C

CH2

CH3

H2CH2C

H2CH2C

H2C CH3

H2C CH3

Many different shapes are possible for octane. The structures do not pack together efficiently and it takes very little energy to disrupt the solid lattice structure, and thus the very low melting point.

On the other hand, rotation about the central C-C bond does not change the overall shape of 2,2,3,3-tetramethyl-butane. The molecule always has the same shape of a compact cylinder. A regular consistent packing arrangement in the lattice structure results. If the melting point was only 5oC higher, it would sublime.

C

H3C

H3CH3C

C

CH3CH3

CH3

=

Problem 10 - The following pairs of molecules have the same formula; they are isomers. Yet, they have different melting points. Match the melting points with the correct structure and provide an explanation for the difference. Hint: single bonds can rotate and pi bonds tend to be rigid, fixed shapes.

CH3C C CH3 CH2C C H

H3C

melting points = -126oC, -32oC

a. b.

melting points = -185oC, -105oC

c.

melting points = -95oC, +6oCbut both are C6 alkanes.

C6H14 C6H12

melting points = -88oC, +79oC

d.

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 20 Ions with covalent bonds

Sometimes there is a mix of covalent and ionic bonds. Anions and/or cations can be connected with covalent bonds and still have a net overall negative or positive charge, and both charges are even possible in the same molecule (e.g. amino acids). The following ions provide additional examples of ions with covalent bonds from your prior chemistry course.

NO

O

NO

O

O

S

O

O

O S

O

O

OO

C

O

O O

Cl

O

O

OO Cl OCl

O

OO Cl OO C

O

O O

CNNH

H

OHO

H

H H N

H

H H

H

P

O

O

OO

nitrite nitrate sulfite sulfate

carbonateperchlorate chlorate chlorite hypochlorite bicarbonate

phosphate

cyanide amide anion hydroxide hydronium ion ammonium ion

C

O

CH2

O

H

N

HH

H

glycine (amino acid) 2a. Dipole-dipole interactions (in between polarity) – Since the partial charges present in molecules having dipole moments are less than full charges and the bonds are very directional (not “omni”), attractions for neighbor molecules are weaker than is found in ionic salts. However, polar molecules usually have stronger attractions than nonpolar molecules of similar size and shape. Many polar molecules below are compared with a similar size and shape nonpolar molecules to show how polarity can affect boiling points ( a better indication of the strength of attractions among neighbor molecules when other factors are similar). A higher boiling point indicates stronger attractions. Dipole-dipole interactions represent moderate forces of attraction between partially polarized molecules. The molecular dipole moments are indicators of charge imbalance due to a difference in electronegativity , bond length and molecular shape. Fluorine is unusual in that it makes very polar bonds but is not very polarizable and holds on very tightly to its lone pairs, so it sometimes surprises us with lower than expected boiling points. Sometimes atoms that hold onto their electrons very tightly are called ‘hard’ and atoms that have polarizable electrons are called ‘soft’.

Remember, melting points are better indicators of packing efficiency and boiling points are better indicators of forces of attraction. Miscellaneous compounds are compiled below, representing a variety of factors discussed in this topic. Useful Comparisons

CC

H

CN

H

Hpolarnonpolar

= 0.0 Dbp = -81oCmp = -84oCH2O sol. = insolublepKa = 25

= 2.98 Dbp = +26oCmp = -13oCH2O sol. = misciblepKa = 9.2

CN

H

more polar

C

O

H H

C

C

H H

H H

= 0.0 Dbp = -104oCmp = -169oCH2O sol. = 2.9mg/LpKa = 44

= 2.3 Dbp = -20oCmp = -92oCH2O sol. = 400g/LpKa = NA

nonpolar

polar

C

O

H H

more polar

resonanceresonance

Tbp = 107oCTbp = 84oC

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 21

CC

H2C

CN

H3C

H polarnonpolar

= 0.78 Dbp = -23oCmp = -102oCH2O sol. = insoluble

= 3.92 Dbp = +81oCmp = -46oCH2O sol. = miscible

CN

H3C

more polar

resonance

Tbp = 104oC

What is the effect of "R" groups? Do they make the molecule more polar, less polar or no different? Electron donation or electron withdrawal through sigma bonds is called an inductive effect.

C

O

H H = 2.3 Dbp = -20oCmp = -92oCH2O sol. = 400g/L

polar

C

O

H H

resonanceC

O

H3C H

= 2.68 Dbp = +20oCmp = -123oCH2O sol. = very sol.

C

O

H3C CH3 = 2.91 Dbp = +56oCmp = -94oCH2O sol. = very sol.

C

O

H3C H

resonance

C

O

H3C CH3

resonancepolar polar

C

O

= 0.12 Dbp = -192oCmp = -205oCH2O sol. = 28mg/L

nonpolar ?

C

O

C

O

50% 40% 10%theoretical estimate of percent contribution

resonance structures

Importance of resonance structures?Electronegativity versus more bonds and full octets?

CC

H

CN

H

Hpolarnonpolar

= 0.0 Dbp = -81oCmp = -84oCH2O sol. = insoluble

= 2.98 Dbp = +26oCmp = -13oCH2O sol. = miscible

H3C

H2C

CH3 H3CO

CH3

= 0.08 Dbp = -42oCmp = -188oCH2O sol. = 0.004 mg/L

= 1.30 Dbp = -22oCmp = -141oCH2O sol. = 71g/L

CH2

H2C

CH2

CH2

OCH2

= ? Dbp = +36oCmp = -130oCH2O sol. = ? mg/L

= 1.15 Dbp = +35oCmp = -116oCH2O sol. = 69mg/L

H3C CH3 H3C CH3

C

O

H2N H

= 3.71 Dbp = +210oCmp = +2oC

CHH

C

O

F CH3

= 2.96 Dbp = +21oCmp = -84oC

C

O

HO H

= 1.41 Dbp = +118oCmp = +17oC

C

O

H2N CH3

= 3.76 Dbp = +222oCmp = +80oC

= 1.74 Dbp = +118oCmp = +17oC

C

O

F H

= 2.02 Dbp = -29oCmp = -142oC

C

O

HO CH3

O

CCH3H

O

= 2.68 Dbp = +20oCmp = -123oC

= 2.3 Dbp = -20oCmp = -92oC

CH

CH2

Cl

C

CH2

Cl Cl

CH3

CH2Cl

CH3

CHCl Cl

CH3

CCl Cl

Cl

CH

CCl

= 2.06 Dbp = +12oCmp = -139oC

= 2.05 Dbp = +57oCmp = -97oC

= ??? Dbp = +74oCmp = -33oC

= 1.43 Dbp = -13oCmp = -154oC

= 1.3 Dbp = +32oCmp = -122oC

= 0.44 Dbp = ???oCmp = -126oC

H2C

CH2

Cl

= 1.80 Dbp = +84oCmp = -35oC

ClH2C

CHCl Cl

= ??? Dbp = +110oCmp = -37oC

Cl

CH

HC

Cl

= 0.0 Dbp = +48oCmp = -81oC

Cl

CH

CH

Cl

= 1.9 Dbp = +60oCmp = -81oC

Cl

C

O

Cl Cl

= 1.17 Dbp = +8oCmp = -118oC

phosgene

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 22

CH2C

CH2

= 0.0 Dbp = -34oCmp = -134oC

nonpolar

H3C

H2C

CH3

= 0.08 Dbp = -42oCmp = -188oC

nonpolar

HC

CH2H3C

= 0.37 Dbp = -47oCmp = -185oC

nonpolar

CH

CH3C = 0.75 D

bp = -23oCmp = -103oC

nonpolar

H CH3 NH2 OH F Cl

N

H

= 0.0 Dbp = 81oCmp = 5C

= 0.31 Dbp = 111oCmp = -95oC

= 1.53 Dbp = 184oCmp = -6oC

= 1.55 Dbp = +182oCmp = +40oC

= 1.66 Dbp = +84oCmp = -44oC

= 1.54 Dbp = +131oCmp = -45oC

= 2.37 Dbp = +115oCmp = -42oC

Br

= 1.73 Dbp = +156oCmp = -31oC

I

= 1.91 Dbp = +188oCmp = -31oC

2b. Hydrogen bonds – Hydrogen bonds represent a very special dipole-dipole interaction. Molecules that have this feature have even stronger attractions for neighbor molecules than normal polar bonds would suggest. Solvents that have an O-H or an N-H bond are called “protic solvents” and can both donate and accept hydrogen bonds (because they also have lone pairs of electrons). They generally have higher boiling points than similar sized structures without any “polarized hydrogen atoms”. The reasons for a polarized hydrogen atom’s strong attraction for electron density is that there are no other layers of electrons around a hydrogen atom (hydrogen is the only atom to use the n=1 shell in bonding). When a hydrogen atom’s electron cloud is polarized away from the hydrogen atom in a bond with an electronegative atom, usually oxygen or nitrogen in organic chemistry, an especially strong polarization results. In a sense the hydrogen atom is “desperate” for additional electron density and strongly attracted to any source that can supply this, such as a lone pair on a neighbor molecule, or even a pi bond. We call such interactions "hydrogen bonds". A molecule that has such a polarized hydrogen is classified as a hydrogen bond donor. A molecule that has a partial negatively charged region that can associate with such a hydrogen is classified as a hydrogen bond acceptor. Quite often the hydrogen bond acceptor is a lone pair of electrons on another oxygen or nitrogen atom, but fluorine, chlorine bromine or sulfur may provide lone pair acceptor sites as well. Weak hydrogen bonds can even form with C=C pi bonds.

O

HH

O

H

H

OH

H

donates hydrogen bond

accepts hydrogen bond

Hydrogen bonding holds the molecules more tightly to one another. This can be seen in higher boiling points among similar structures where hydrogen bonding is possible versus not possible. Many examples below show this property.

Cl

H

CH3C

O

O H

C CH3

O

OH

CCH3C

H

H

H

accepts hydrogen bond

donates hydrogen bond

donates hydrogen bond

accepts hydrogen bond

C

O

H3C CH3

OH

H

H

accepts hydrogen bond

donates hydrogen bond

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 23

N

N

N

N

N H

H

O

HDNA

N

N

NH

H

O DNA

guanine cytosine

three hydrogen bonds in G-C base pair

N

N

N

N

DNAN

N

O

O DNAadenine thymine

two hydrogen bonds in A-T base pair

H

N H

H

Which base pair binds more tightly, GC, AT or are they about the same?

Problem 11 – Provide an explanation for the different boiling points in each column.

HFmp = -84oCbp = +20oC = 1.86 D = 1.8

mp = -114oCbp = -85oC = 1.0 D = 1.0

mp = -87oCbp = -67oC = 0.8 D = 0.8

H2O

mp = 0oCbp = +100oC = 1.80 D = 1.2

mp = -82oCbp = -60oC = 1.0 D = 0.4

mp = -66oCbp = -41oC = ? D = 0.4

NH3

mp = -78oCbp = -33oC = 1.42 D = 0.8

mp = -132oCbp = -88oC = 0.0 D = 0.0

mp = -111oCbp = -62oC = 0.0 D = 0.0

CH4

mp = -182oCbp = -164oC = 0.0 D = 0.3

mp = -185oCbp = -112oC = 0.0 D = 0.3

mp = -165oCbp = -88oC = 0.0 D = 0.2

HClH2SPH3

SiH4HBrH2SeAsH3

GeH4

4B 5B 6B 7B

Hemp = -272oCbp = -269oC = 0.0 D = NA

mp = -249oCbp = -246oC = 0.0 D = NA

mp = -189oCbp = -185oC = 0.0 D = NA

Ne

Ar

8B

Temp(oC)

100

50

0

-50

-100

-150

boiling points (oC)

CH4

GeH4

SiH4

SnH4

SbH3

PH3

NH3

row2

row3

row4

row5

-200

-250

-300

H2O

HF

He

H2S

H2Se

H2Te

HCl HBr

HI

Ne

Ar

Kr

AsH3

Answer: Each dotted line represents the boiling points in the hydrides in a column in the periodic table, plus the Noble gases. In the Noble gases there is a continuning trend towards higher boiling point as the main atom gets larger with more and more polarizable electron clouds. Where bonds to hydrogen become polar, hydrogen bonding becomes important, leading to stronger attractions for neighbor molecules and higher boiling points deviate from the trends observed due to dispersion forces. Deviations are clearly seen with NH3, H2O and HF. Melting points are not plotted.

mp = -51oCbp = -35oC = 0.4 D = 0.5

mp = -49oCbp = -2oC = ? D = 0.1

mp = -88oCbp = -17oC = 0.0 D = 0.2

mp = -146oCbp = -52oC = 0.0 D = 0.2

HIH2TeSbH3SnH4mp = -157oCbp = -153oC = 0.0 D = NA

Kr

H3C

H2C

CH3H3C

OCH3

= 0.08 Dbp = -42oCmp = -188oCH2O sol. = 40mg/L

= 1.30 Dbp = -22oCmp = -141oCH2O sol. = 71g/L

OHH3C

OH

OH

OH

OH

OH

OH

= 1.69 Dbp = +65oCmp = -98oCH2O sol. = miscible

= 1.69 Dbp = +78oCmp = -114oCH2O sol. = miscible

= 1.68 Dbp = +98oCmp = -126oCH2O sol. = ?

= 1.66 Dbp = +118oCmp = -90oCH2O sol. = 73g/L

= ? Dbp = +138oCmp = -78oCH2O sol. = 22g/L

= ? Dbp = +157oCmp = -50oCH2O sol. = 6g/L

= ? Dbp = +195oCmp = -16oCH2O sol. 0

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 24 Problem 12 – Provide an explanation for the different boiling points in each series. In part b, an H-F bond is expected to be more polar than an H-O bond, so why does HF boil lower than H2O? Think of an "H bond" donor site as a hand that can grab and a lone pair as a handle that can be held onto. If you only had one hand, it really doesn't make any difference how many handles are available to grab hold of and if you only have one handle, it doesn’t make any difference how many hands you have. But, if you have two hands and two handles a much stronger grip is possible with twice the handholds.

CH4 HO

H

= 0 Dbp = -161 oCmp = -182oC

= 1.78 Dbp = +100 oCmp = 0oC

= 1.85 Dbp = +20 oCmp = -84oC

HN

= 1.47 Dbp = -33 oCmp = -78oC

H

H

F Ha.

HO

H

b.

= 1.78 Dbp = +100 oCmp = 0oC

CH3H3C NH3C OH3C FH3C

H

H

H

= 0 Dbp = -89 oCmp = -183oC

= 1.47 Dbp = -7 oCmp = -93oC

= 1.78 Dbp = +65 oCmp = -97oC

= 1.85 Dbp = -78 oCmp = -142oC

c.

CH2

H2C

NH2

= 1.2 Dbp = +48 oCmp = -83oC

= 0.6 Dbp = +3 oCmp = -117oC

H3C

H2C

N

= 1.0 Dbp = +36 oCmp = ??oC

CH3

H

H3CNH3C

CH3

CH3

d.

H3C

H2C

CH2

= 0.08 Dbp = 0 oCmp = -136oC

O

H2C

CH2

= 1.69 Dbp = +195 oCmp = -13oC

OH3C

H2C

CH2

= 1.22 Dbp = +97 oCmp = -126oC

OCH3H H

He.

= 2.33 Dbp = -19 oCmp = -92 oC

f.

C

O

H H CH3

OH

= 1.69 Dbp = +78 oCmp = -114 oC

= 2.7 Dbp = +20 oCmp = -123 oC

C

O

H3C H CH2

OH

= 1.66 Dbp = +82 oCmp = -89 oC

= 2.91 Dbp = +56 oCmp = -95 oC

C

O

H3C CH3CH

OH

H3C H3C CH3 = 1.78 Dbp = +65 oCmp = -97oC

The effect of larger size atoms having similar Zeff is to allow more distortion of the electron cloud and larger fluctuating, transient dipoles. Stronger attractions for neighbor molecules leads to higher boiling points. The halomethanes show a similar trend, even though their dipole moments are very similar.

FH3C

bp =-78 oC

ClH3C

bp = -24oC

H3C

bp = +4oC bp = +42oC

H3CBr I

Larger, less tightly held valence shell of iodine is more polarizable.

= 1.85 D = 1.87 D = 1.81 D = 1.62 D

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 25 Problem 13 – Provide an explanation for the different boiling points in each series.

e. H2CH3C

HCH3C

H2C CH3

C

CH3

H3C CH3

bp = +30 oC

H2C

CH3

H2C CH3

bp = +36 oCCH3

bp = +10 oC

CH3H3C

bp = -89 oC

bp = -0.5 oC

bp = -23 oC

F Cl Br I

bp = +85 oC bp = +130 oC bp = +155 oC bp = +188 oC

O

bp = +5 oC

OH

bp = +78 oC

bp = -47 oC

O

bp = +20 oC

HO O

bp = +101 oC

H2N O

bp = +210 oC

bp = -42 oC

N

bp = +82 oC

CO O

bp = -78 oC(sublimes)

a.

b.

c.

d.

e. CH4 CH3Cl CCl4

bp = -164 oC bp = -24 oC bp = +40 oC bp = +61 oC bp = +77 oC

CH2Cl2 CHCl3

H3C

H2C

CH3 H3C

H2C

O

H

H3C

H2C

N

H

Hbp = -42 oC bp = +17 oC bp = +78 oC

mp = -91 oCbp = +69 oC

H3C

CH2

H2C

CH2

H2C

CH3

hexane, C6H14cyclohexane, C6H12 benzene, C6H6

H2C

H2C

CH2

CH2

CH2

H2C

C

C

C

C

C

CH

H

H

H

H

H

mp = +6 oCbp = +81 oC

mp = +5 oCbp = +80 oC

f.

g.

Problem 14 – Match the given boiling points with the structures below and give a short reason for your answers. (-7oC, +31 oC, +80 oC, +141oC, 1420oC)

O O

OH

2-methylpropene2-methyl-1-butene2-butanone propanoic acid

MW = 56 g/molMW = 70 g/molMW = 72 g/mol MW = 74 g/mol

KCl

MW = 74.5 g/mol

potassium chloride

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 26 Solutes, Solvents and Solutions

Mixing occurs easily when different substances, having similar forces of interaction, are combined. This observation is summarized in the general rule of “Like Dissolves Like”. To discuss the solution process, there are a few common terms that we need be familiar with.

Solutes are substances that are dissolved in a solvent. There may be as few as 1 solute (ethanol in water) or as many as 1000’s of dissolved solutes (blood).

The solvent is the liquid in which the solute(s) is(are) dissolved. The solvent is usually the major component of the mixture. Sometimes when water is present, it is considered to be the solvent, even when present in only 1% (as is often the case in sulfuric acid/water mixtures).

A solution is the combination of the solvent and the solute(s).

To dissolve a solute in a solvent, the forces of interaction among solute molecules must be overcome and the forces of interaction among solvent molecules must be overcome. These are energy expenses. In return, new interactions develop among solute and solvent molecules. These are energy gains. The balance between these energy expenses and energy gains determines whether a solute will dissolve. A solution is formed when the energy gains are greater than the energy expenses. The important interactions are listed below in decreasing order of energy importance.

Possible energy expenses due to (solute / solute) and (solvent / solvent) interactions

1. ion-ion (lattice energy)2. hydrogen bonds3. dipole-dipole4. dispersion forces

increasingenergy

Possible energy gains from (solute / solvent) interactions

1. ion-dipole (solvation energy)2. hydrogen bonds3. dipole-dipole4. dispersion forces

The dielectric constant, , is a measure of the necessary work to create charge in a medium. It is a useful parameter that indicates a solvent’s ability to allow charge separation, such as when ions are dissolved. The reference medium is a “vacuum” ( = 1), but air is about the same ( = 1). Think how difficult it is to separate charge in air (lightening is a possible result). On the other hand, solvents that are polar (with a large dipole moment) are able to insert themselves in between opposite charges, allowing the opposite charges to separate more easily. The dielectric constant, , essentially indicates the fraction of work needed to separate charge compared to a vacuum (same as air, = 1). For example, water (with its large, opposite polarity) has a dielectric constant of 78, indicating that it is 78 times easier to separate charge in water than in air. Consider how easy is it to dissolve NaCl in water (it happens at room temperature) and how hard it is to boil solid NaCl (bp > 1400oC).

______

++++++

- +- +

battery creates charge on plates

The medium (solvent) influences the work to separate charge by orienting its polar molecules opposite to the charged plates (think of ions in solution). This spreads out the charge throughout the medium. In a sense, the solvent is delocalizing charge in a manner analogous to resonance.

Work to create charge on plates.

(terms)=

= dielelectric constant (air = 1), (H2O = 78)

Solvent Classifications of polarity

polar: dielectric constant > 15

nonpolar: dielectric constant < 15

Solvent as protic or aprotic

protic solvent: has a polarized hydrogen atom on an oxygen (O-H) or nitrogen (N-H) atom

aprotic: no polarized hydrogen atoms

The work to create charge in water is to 1/78 of the work to create charge in airbecause of polar water's ability to delocalize the charge throughout itself.

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 27

Solvents are classified as polar or nonpolar based on their dielectric constant (see table below). If the dielectric constant is greater than 15, then the solvent is considered polar. If less than 15, then the solvent is considered nonpolar. This is example of an arbitrary division, created for our convenience.

Water and alcohols (= “organic water”) are in the special class of solvents that have a polarized hydrogen atom in a covalent bond (O-H > N-H). Solvents in this class tend to be especially good at interacting with both types of charge. Such solvents are called “protic solvents”, because they can both donate and accept hydrogen bonds. In our course, protic solvents have an O-H bond or an N-H bond and tend to be better at solvating (thus, dissolving) polar and ionic solutes than solvents without this feature.

O

H

RO

R

HO

H

R

OR

HO

R

H

O

R

H

OR

H

OR

H

Protic solvents are good at solvating both cations and anions. Many partial negative solvent dipoles (lone pairs on oxygen or nitrogen atoms) can take the place of an anion, while many partial positive solvent dipoles (polarized hydrogen atoms) can take the place of the cation.

Protic solvents usually have an O-H bond.

- -

-

-

++

++

Solvents that are classified as polar ( > 15, see below), but do not have a polarized hydrogen are called polar

aprotic solvents. They tend to be very good at solvating positive charge, but not so good at solvating negative charge. This turns out to be very helpful when anions need to react in chemical reactions, and the use of such solvents is very common in organic chemistry when that is the goal.

Aprotic solvents do NOT have an O-H (or N-H) bond.

Polar aprotic solvents are good at solvating cations and not so good at solvating anions.

C

N

CH3

C

N

CH3

C

N

H3C

C

N

H3C

C

N

CH3

Nitrogen and oxygen lone pairs can interact strongly with cationic charge.

C

N

CH3

Polar aprotic solvents interact poorly with anionic charge, so they tend to be available to react.

acetonitrile(ethanenitrile)

- -

--

+ +

Solvents with e < 15 and no polarized hydrogen atom are called nonpolar solvents and generally do not mix well with polar and ionic substances. In biochemistry such substances are referred to as hydrophobic (don’t mix well with water) or lipophilic (mix well with fatty substances). This is a good feature because they can keep different aqueous solutions (blood vs. cytosol) apart and prevent mixing (cell membranes).

Three different kinds of solvents that chemists tend to talk about are: nonpolar solvents, polar aprotic solvents and polar protic solvents. Examples are shown below.

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 28

water H2O 78 proticmethanol (MeOH) CH3OH 33 proticethanol (EtOH) CH3CH2OH 24 protic2-propanol (i-PrOH) (CH3)2CHOH 20 proticmethanoic acid (formic acid) HCO2H 50 protic*ethanoic acid (acetic acid, HOAc) CH3CO2H 6 protic

2-propanone (acetone) CH3COCH3 21 polar aproticdimethyl sulfoxide (DMSO) CH3SOCH3 46 polar aproticdimethyl formamide (DMF) HCON(CH3) 37 polar aproticacetonitrile (AN) CH3CN 36 polar aproticnitromethane CH3NO2 36 polar aprotichexamethylphosphoramide (HMPA) O=P[N(CH3)2]3 30 polar aprotic

ethyl ethanoate (EtOAc) CH3CO2CH2CH3 6 nonpolarethyl ether (Et2O) CH3CH2OCH2CH3 4 nonpolartetrahydrofuran (THF, cyclic ether) (CH2)4O 8 nonpolardichloromethane (methylene chloride) CH2Cl2 9 nonpolartrichloromethane (chloroform) CHCl3 5 nonpolartetrachloromethane (carbon tetrachloride) CCl4 2 nonpolarhexane CH3(CH2)4CH3 2 nonpolar

dielectricCommon Solvents Formula constant () protic/aprotic

*Ethanoic acid violates our arbitray solvent polarity rules but is a strong hydrogen bonding solvent, so is included in the protic solvent group.

HO

H H3CO

H

HC

O

OH

H3CC

CH3

O

H3CS

CH3

O

HC

N

O

(H3C)2NP

N(CH3)2

O

CH3

CH3

H3CC

N

N(CH3)2

NH3C

O

O

H3CC

O

O

H2C

CH3 H3C

H2C

O

H2C

CH3 H2C CH2

CH2

O

H2C C

H

HCl

Cl

water methanol

formic acid acetone

DMSO acetonitrile

nitromethan

HMPA ethyl acetate ether methylene chloride

DMF

THF Problem 15 – Point out the polar hydrogen in methanol. What is it about dimethyl sulfoxide (DMSO) that makes it polar? Draw a simplistic picture showing how methanol interacts with a cation and an anion. Also use DMSO (below) and draw a simplistic picture showing the interaction with cations and anions. Explain the difference from the methanol picture.

Two resonance structures of DMSO a polar, aprotic solvent

S

O

H3C CH3S

O

C C

Obeys the octet rule, but has formal charge.

Violates the octet rule, but does not have formal charge. Sulfur has 3d orbitals, which provides a possible explanation for drawing a double bond.

= cation

= anion

methanol

OH3C H

H

HH H

H

H

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 29

Simplistic Sketch of Mixing Solutes and Solvents

ionic substance

Na ClA very large energy input is needed to separate ionic charges from one another (lattice energy).

nonpolarsubstance

octadecane(waxy substance)

OH

H

OH

H

polar protic solvent = water

O

H

H

O

H

H

OH

H

O H

HThe necessary energy to dissolve NaCl comes from many, many ion-dipole interactions (hydration = water, solvation = solvent). All of these smaller interactions between ions and solvent balance the very large ion-ion interactions of the lattice structure and hydrogen bonding of water. If the solvation energy is larger than the lattice energy, the salt will dissolve (NaCl), but if the lattice energy is larger than the solvation energy, the salt will not dissolve (AgCl).

There is no way the nonpolar solvent can compensate for the lattice energy of the salt. The salt stays in its crystalline form and sinks or floats based on its density relative to the solvent. Whatever is more dense sinks and less dense floats (think of a stick and a rock in water).

cost = hydrogen bondingcost = lattice energygain = ion-dipole

cost = dispersion forcescost = lattice energygain = dispersion-ion (too weak)

OH

H

OH

H

polar protic solvent = water

nonpolar solvent = octane(like gasoline)

cost = hydrogen bondingcost = dispersion forcesgain = dispersion-dipole

cost = dispersion forcescost = lattice energy (weak dispersion)gain = dispersion-dispersion (weak)

OH

H

OH

H

The weak dispersion forces do not compensate for the broken hydrogen bonds. Also, there is a large entropy cost for water to structure itself around the nonpolar solute molecules. Water stays separate from the nonpolar solute and is on the top or bottom based on the densities of the substances (greater density is on the bottom).

There are no strong forces to overcome in either the solvent or the solute. There are no strong interactions gained in the solution(only dispersion forces). There is a favorable increase in entropy (S) from the disorder created in the mixing of the solution, so the substances mix.

CH3(CH2)16CH3

Only weak dispersion forces are present in pentane.

CH3(CH2)6CH3

CH3(CH2)6CH3

nonpolar solvent = octane(like gasoline)

Problem 16 – a. Hexane (density = 0.65 g/ml) and water (density = 1.0 g/ml) do not mix. Which layer is on top? b. Carbon tetrachloride (density = 1.59 g/ml) and water (density = 1.0 g/ml) do not mix. Which layer is on top? Problem 17 - The melting point of NaCl is very high ( 800oC) and the boiling point is even higher (> 1400oC). Does this imply strong, moderate or weak forces of attraction between the ions? Considering your answer, is it surprising that NaCl dissolves so easily in water? Why does this occur? Consider another chloride salt, AgCl. How does your analysis work here? What changed? Problem 18 – a. Which solvent do you suspect would dissolve NaCl better, DMSO or hexane? Explain your choice? b. Which solvent do you suspect would dissolve NaCl better, methanol or benzene? Explain your choice?

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 30 Problem 19 – The terms "hydrophilic" and "hydrophobic" are frequently used to describe structures that mix well or poorly with water, respectively. Biological molecules are often classified in a similar vein as water soluble (hydrophilic) or fat soluble (hydrophobic). The following list of well known biomolecules are often classified as fat soluble or water soluble. Examine each structure and place it in one of these two categories. Explain you reasoning.

OH

vitamin A N

N

N

N

O

H

OH

HO

OH

OH

O

vitamin B2(riboflavin)

N

OH

OH

OP

O

O

O

Hvitamin B6

(pyridoxine)

a b c

OO

P

OO

O

P OO

O

PO

O

O

HO OH

N

N

N

N

NH2

ATP

O

O

HO

HO

OH

OH

vitamin C(ascorbic acid)

HO

vitamin D2

d e f

O

HO

O

O

vitamin E (-tocopherol)

vitamin K1HO cholesterol

g

h

i

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Chem 201/Beauchamp Topic 1: Atoms,Bonding,Dipoles,IP, solvation 31 Problem 20 – a. Carbohydrates are very water soluble and fats do not mix well with water. Below, glucose is shown below as a typical hydrophilic carbohydrate, and a triglyceride is used as a typical hydrophobic fat. Point out why each is classified in the manner indicated.

O

HO

HO

HO OH

OHO

OH

HO

HOOH

HO

glucose (carbohydrate)

O

O

O

O

O

O

typical saturated triglyceride (fat)

=

b. All of the “OH” groups in glucose can be methylated. What do you think this will do to the solubility of glucose? Why? One of these structures is soluble in carbon tetrachloride the other one is not. Which one is it and why?

O

OH

OH

HOHO

OH

O

OCH3

OCH3

H3COH3CO

OCH3

methylation reaction

glucose methylated glucose Problem 21 – Bile salts are released from your gall bladder when hydrophobic fats are eaten to allow your body to solubilize the fats, so that they can be absorbed and transported in the aqueous blood. The major bile salt glycolate, shown below, is synthesized from cholesterol. Explain the features of glycolate that makes it a good compromise structure that can mix with both the fat and aqueous blood. Use the ‘rough’ 3D drawings below to help your reasoning, or better yet, build models to see the structures for yourself (though it’s a lot of work).

HO

H

H H

NH

HO

H

H Hsynthesized in many,

many steps in the body

HOH

OHO

O

Ocholesterol

glycolate(bile salt)1. source for steroid syntheses in the body

2. important constituent of cell membranes2. transported in blood to delivery sites via VLDL LDL HDL

VLDL = very low density lipoprotein, has high cholesterol concentrationLDL = low density lipoprotein, has medium cholesterol concentrationHDL = high density lipoprotein, has low cholestero contcentration

All polar groups are on the same face. Which side faces water and which side faces fat molecules? (See structures below.)

HO OH

OH

OH

CO2

representation of cholesterol as a long flat shape

representation of bile acid (glycolate) as a long bent shape havingtwo different faces, one polar and one nonpolar