characterization and functional applications of human ips cell- … · 2019-08-26 · at the end of...

1
Target Identification Target Validation Compound Screening Lead Optimization Preclinical Trials Clinical Trials www.cellulardynamics.com Madison, WI USA (608) 310-5100 Introduction Here we demonstrate the differentiation of midbrain dopaminergic neurons from human iPS cells. Cell type-specific characterization data, as well as various application data are also presented. Robust and reproducible methods to generate DA neurons at high purity, coupled with the development of functional cell-based assays with “normal” cells, will enable the successful downstream production of panels of disease-specific samples derived from patient iPS cells for the study of neurological disorders such as Parkinson’s Disease. Summary Cell Type Characterization Measuring Pharmaco-Influences Functional Application Data Human Donor Terminally differentiated cell types Induced Pluripotent Stem (iPS) Cells Based upon work published in the literature (Kriks et al. 2011), coupled with additional differentiation and workflow improvements, an optimized midbrain dopaminergic neuron differentiation protocol was established. This resulted in the ability to produce large-scale cryopreserved DA neurons. Human iPSC-derived DA neurons were plated in 96-well plates coated with PLO/laminin and cultured for 1-2 weeks with regular media changes. On the day of the assay, cells were loaded with Calcium 6 dye (Molecular Devices), stimulated with various ligands, and increases in fluorescence were detected on a FLIPR Tetra system. Representative data presented here shows a titration of kainic acid. Characterization and Functional Applications of Human iPS Cell-derived Midbrain Dopaminergic Neurons Coby Carlson 1 , Lucas Chase 1 , Kile P. Mangan 1 , Arne Thompson 1 , Susan DeLaura 1 , Jayne Hesley 2 , Oksana Sirenko 2 , Evan Cromwell 2 , Brad Swanson 1 , and Vanessa Ott 1 1 Cellular Dynamics International, Inc., Madison, WI USA 2 Molecular Devices, LLC., Sunnyvale, CA USA Relevant midbrain dopaminergic markers are expressed in DA Neurons post-thaw. High Content Imaging (HCI) of FoxA2 (left; 94% positive), LMX1 (center; 96% positive), and FoxA2/LMX1 overlay (right; 91% co-positive) demonstrate a highly pure population (>90%) of midbrain neurons. The high degree of purity was also confirmed by flow cytometry analysis. FoxA2 / Hoechst LMX1 / Hoechst FoxA2 / LMX1 Dopaminergic (DA) Neuron : producer of dopamine; found in different regions in the CNS with the highest concentration in the midbrain. Dopamine: role in voluntary movement and a broad array of behavioral processes such as mood, reward, addiction, and stress. iPSC technology grants access to the CNS. The advent of induced pluripotent stem cell (iPSC) technology has enabled the use of previously inaccessible human cells, specifically neuronal cell types like cortical or dopaminergic neurons. Differentiation Protocol Development iPS Cell Expansion Midbrain Specification Floor Plate Patterning Midbrain DA Neuron Induction Cell Cryopreservation Day 0 FoxA2 + FoxA2 + / Lmx1 + Map2 + /Nestin - and FoxA2 + /TH + Map2 + /Nestin - and FoxA2 + /TH + Day 42 Neuron Maturation 0 20 40 60 80 100 120 A B C D E F G % Positive [Molecule X] FoxA2+ Lmx1+ FoxA2+/Lmx1+ Low High [Molecule X] High content imaging (HCI) serves as a useful tool for optimizing critical stages of midbrain dopaminergic neuron differentiation from human iPS cells. Data shown here (left) shows the titration of a critical component (Molecule X) used during patterning to achieve high levels of co-expression of the floor-plate marker FoxA2 and the roof-plate marker Lmx1. Midbrain DA Neurons : located in the substantia nigra compacta (SNc) and the ventral tegmental area (VTA); send fibers to other regions in both sides of the brain. Parkinson's Disease (PD) : caused by selective degenera- tion of the SNc DA neurons. What is a Dopaminergic Neuron? 0 20 40 60 80 100 % Viability Lot 1 Thaw Viability Day 3 Post-Thaw Day 7 Post-Thaw Day 14 Post-Thaw iCell DopaNeurons are highly viable, have significant neurite outgrowth within 2-3 days post-thaw, and maintain high purity for extended time in culture. Lot 2 Lot 3 Leveraging the power of iPSC technology, CDI is building out a Disease & Diversity Panel, which includes terminally differentiated cell types from donors of diverse ethnic and disease-specific populations. Not only will there be more “controls”, but there is also a heavy focus on neurological diseases, including Parkinson’s Disease-related targets such as LRRK2 and alpha-synuclein. Patient-Derived iPS Cells: Models for Parkinson’s In collaboration with NINDS, CDI is making iPSC from monogenic PD donors: available at the end of 2014. Ca 2+ Flux Assay Multi-Electrode Array 1.E-06 1.E-05 1.E-04 1.E-03 1.E-02 1.E-01 1.E+00 FOXG1 OTX2 EN1 FOXA2 LMX1A NURR1 TH AADC GIRK2 VMAT2 DRD2 DBH SNCA SYN1 SYP VGLUT1 VGLUT2 VGAT CHAT OLIG2 Relative Expression (vs. GAPDH) Day 7 PT day 14 PT Day 21 PT Day 28 PT Day 42 PT Human SN Regional Specification Dopaminergic Identification Neuronal Subtypes Gene expression time course as measured by qPCR indicates that most genes are expressed at very similar levels over a 4-6 week period. An adult human substantia nigra RNA was included as a control for comparison. Relative expression versus GAPDH is depicted. Results lower than 1x10 -4 (gray shaded box) are considered to be below background or negative for expression. EC 50 = 8.6 M 24 h Apomorphine (APO; 7.5 M) 50 sec Frequency (Hz) Frequency (Hz) 24 h Vehicle Control APO + D1 antagonist (SCH 23390; 4 μM) Frequency (Hz) 24 h DA neurons were cultured on 48-well MEA plates coated with PEI/laminin and their electrical activity was analyzed at Day 8 following treatment w/ different compounds. In this example, velocity graphs depicting instantaneous mean firing rate levels over time (binned at 500 msec) were generated with the iCell NeuroAnalyzer before and after drug addition. Stimulation w/ apomorphine resulted in increased excitatory and connectivity levels (ie. # of bursts and bursting peak heights) after another day in culture. Co-application of a D1 antagonist abolished the induced response of APO, suggesting homeostatic receptor modulation following dopamine receptor stimulation. Control cultures displayed no change over time. High Content Imaging Map2 / Nestin / Hoechst TH / FoxA2 / Hoechst FoxA2AF647 Lmx1AF488 High Viability and Expected Morphology High Purity Determined by Multiple Methods Gene Expression Optimized Protocol Phenotype Day 14 DA neurons can be cultured for extended period of time. After two weeks, there is a significant degree of neurite outgrowth and the sophisticated network formed at this point is reminiscent of a classical neuronal phenotype. DA Neurons are >80% TH-positive. 500 400 300 200 100 0 -100 -200 -300 -400 -500 Voltage (V) IC 50 values: Rapa = 1.3 M Rot = 4.3 M Sal = 3.6 M Untreated DA neurons stained with MitoTracker ® Orange (left), while treatment with CCCP (0.4 M) demonstrates mitochondrial toxicity (right). Images acquired at 20X. Nuclei are stained blue with DAPI. MitoTracker Red / Cyto-ID Cells treated with chloroquine (30 M) In collaboration with Molecular Devices, we are developing HTS-compatible assays for autophagy (left), mitochondrial toxicity (above), and neurite outgrowth (data not shown). Additionally, software algorithms for custom analysis of pheno- typic assays are also being developed (right).

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Page 1: Characterization and Functional Applications of Human iPS Cell- … · 2019-08-26 · at the end of 2014. Ca. 2+ Flux Assay . Multi-Electrode Array . 1.E-06 1.E-05 1.E-04 1.E-03 1.E-02

Target

Identification

Target

Validation

Compound

Screening

Lead

Optimization

Preclinical

Trials

Clinical

Trials

www.cellulardynamics.com Madison, WI USA (608) 310-5100

Introduction

Here we demonstrate the differentiation of midbrain dopaminergic neurons from

human iPS cells. Cell type-specific characterization data, as well as various

application data are also presented. Robust and reproducible methods to

generate DA neurons at high purity, coupled with the development of functional

cell-based assays with “normal” cells, will enable the successful downstream

production of panels of disease-specific samples derived from patient iPS cells for

the study of neurological disorders such as Parkinson’s Disease.

Summary

Cell Type Characterization

Measuring Pharmaco-Influences

Functional Application Data

Human Donor Terminally

differentiated

cell types

Induced

Pluripotent Stem

(iPS) Cells

Based upon work published in the literature (Kriks et al.

2011), coupled with additional differentiation and workflow

improvements, an optimized midbrain dopaminergic neuron

differentiation protocol was established. This resulted in the

ability to produce large-scale cryopreserved DA neurons.

Human iPSC-derived DA neurons were plated

in 96-well plates coated with PLO/laminin and

cultured for 1-2 weeks with regular media

changes. On the day of the assay, cells were

loaded with Calcium 6 dye (Molecular

Devices), stimulated with various ligands, and

increases in fluorescence were detected on a

FLIPR Tetra system. Representative data

presented here shows a titration of kainic acid.

Characterization and Functional Applications of Human

iPS Cell-derived Midbrain Dopaminergic Neurons

Coby Carlson1, Lucas Chase1, Kile P. Mangan1, Arne Thompson1, Susan DeLaura1, Jayne Hesley2,

Oksana Sirenko2, Evan Cromwell2, Brad Swanson1, and Vanessa Ott1

1 Cellular Dynamics International, Inc., Madison, WI USA 2 Molecular Devices, LLC., Sunnyvale, CA USA

Relevant midbrain dopaminergic markers are expressed in DA Neurons

post-thaw. High Content Imaging (HCI) of FoxA2 (left; 94% positive), LMX1

(center; 96% positive), and FoxA2/LMX1 overlay (right; 91% co-positive)

demonstrate a highly pure population (>90%) of midbrain neurons. The

high degree of purity was also confirmed by flow cytometry analysis.

FoxA2 / Hoechst LMX1 / Hoechst FoxA2 / LMX1

Dopaminergic (DA) Neuron:

producer of dopamine; found in

different regions in the CNS with

the highest concentration in the

midbrain.

Dopamine: role in voluntary

movement and a broad array of

behavioral processes such as

mood, reward, addiction, and

stress.

iPSC technology grants access to the CNS. The advent of

induced pluripotent stem cell (iPSC) technology has enabled

the use of previously inaccessible human cells, specifically

neuronal cell types like cortical or dopaminergic neurons.

Differentiation Protocol

Development

iPS Cell

Expansion

Midbrain

Specification

Floor Plate

Patterning

Midbrain DA

Neuron Induction

Cell

Cryopreservation

Day 0

FoxA2+ FoxA2+ / Lmx1+ Map2+/Nestin- and

FoxA2+/TH+

Map2+/Nestin- and

FoxA2+/TH+

Day 42

Neuron Maturation

0

20

40

60

80

100

120

A B C D E F G

%

Po

sit

ive

[Molecule X]

FoxA2+ Lmx1+ FoxA2+/Lmx1+

Low High [Molecule X]

High content imaging (HCI)

serves as a useful tool for

optimizing critical stages of

midbrain dopaminergic neuron

differentiation from human iPS

cells. Data shown here (left)

shows the titration of a critical

component (Molecule X) used

during patterning to achieve

high levels of co-expression of

the floor-plate marker FoxA2

and the roof-plate marker Lmx1.

Midbrain DA Neurons: located

in the substantia nigra compacta

(SNc) and the ventral tegmental

area (VTA); send fibers to other

regions in both sides of the

brain.

Parkinson's Disease (PD):

caused by selective degenera-

tion of the SNc DA neurons.

What is a Dopaminergic Neuron?

0

20

40

60

80

100

% V

iab

ilit

y

Lot 1

Thaw Viability

Day 3 Post-Thaw Day 7 Post-Thaw Day 14 Post-Thaw

iCell DopaNeurons are highly viable, have significant

neurite outgrowth within 2-3 days post-thaw, and

maintain high purity for extended time in culture. Lot 2 Lot 3

Leveraging the power of iPSC technology,

CDI is building out a Disease & Diversity

Panel, which includes terminally differentiated

cell types from donors of diverse ethnic and

disease-specific populations. Not only will

there be more “controls”, but there is also a

heavy focus on neurological diseases,

including Parkinson’s Disease-related targets

such as LRRK2 and alpha-synuclein.

Patient-Derived iPS Cells:

Models for Parkinson’s

In collaboration

with NINDS, CDI is

making iPSC from

monogenic PD

donors: available

at the end of 2014.

Ca2+ Flux Assay

Multi-Electrode Array

1.E-06

1.E-05

1.E-04

1.E-03

1.E-02

1.E-01

1.E+00

FO

XG

1

OT

X2

EN

1

FO

XA

2

LM

X1

A

NU

RR

1

TH

AA

DC

GIR

K2

VM

AT

2

DR

D2

DB

H

SN

CA

SY

N1

SY

P

VG

LU

T1

VG

LU

T2

VG

AT

CH

AT

OL

IG2

Rela

tive E

xp

res

sio

n (

vs.

GA

PD

H)

Day 7 PT

day 14 PT

Day 21 PT

Day 28 PT

Day 42 PT

Human SN

Regional

Specification

Dopaminergic

Identification

Neuronal

Subtypes

Gene expression time course as measured by qPCR indicates that most genes

are expressed at very similar levels over a 4-6 week period. An adult human

substantia nigra RNA was included as a control for comparison. Relative

expression versus GAPDH is depicted. Results lower than 1x10-4 (gray shaded

box) are considered to be below background or negative for expression.

EC50 = 8.6 M

24 h

Apomorphine (APO; 7.5 M)

50 sec

Fre

qu

en

cy (

Hz)

Fre

qu

en

cy (

Hz)

24 h

Vehicle Control

APO + D1 antagonist (SCH 23390; 4 µM)

Fre

qu

en

cy (

Hz)

24 h

DA neurons were cultured on 48-well MEA plates coated with PEI/laminin and their

electrical activity was analyzed at Day 8 following treatment w/ different compounds.

In this example, velocity graphs depicting instantaneous mean firing rate levels over

time (binned at 500 msec) were generated with the iCell NeuroAnalyzer before and

after drug addition. Stimulation w/ apomorphine resulted in increased excitatory and

connectivity levels (ie. # of bursts and bursting peak heights) after another day in

culture. Co-application of a D1 antagonist abolished the induced response of APO,

suggesting homeostatic receptor modulation following dopamine receptor

stimulation. Control cultures displayed no change over time.

High Content Imaging

Map2 / Nestin / Hoechst TH / FoxA2 / Hoechst

Fo

xA

2–

AF

64

7

Lmx1–AF488

High Viability and Expected Morphology

High Purity Determined by Multiple Methods

Gene Expression

Optimized Protocol

Phenotype – Day 14

DA neurons can be cultured for

extended period of time. After two

weeks, there is a significant degree

of neurite outgrowth and the

sophisticated network formed at this

point is reminiscent of a classical

neuronal phenotype.

DA Neurons are >80% TH-positive.

500

400

300

200

100

0

-100

-200

-300

-400

-500

Vo

lta

ge

(

V)

IC50 values:

Rapa = 1.3 M

Rot = 4.3 M

Sal = 3.6 M

Untreated DA neurons stained with MitoTracker®

Orange (left), while treatment with CCCP (0.4 M)

demonstrates mitochondrial toxicity (right). Images

acquired at 20X. Nuclei are stained blue with DAPI.

MitoTracker Red / Cyto-ID

Cells treated with

chloroquine (30 M)

In collaboration with Molecular

Devices, we are developing

HTS-compatible assays for

autophagy (left), mitochondrial

toxicity (above), and neurite

outgrowth (data not shown).

Additionally, software algorithms

for custom analysis of pheno-

typic assays are also being

developed (right).