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Chapter-I
1
INTRODUCTION
Heterocyclic chemistry is one of the most complex and intriguing branch; many
broader aspects of heterocyclic chemistry are recognized as disciplines of general
significance that impinge on almost all aspects of modern organic chemistry, medicinal
chemistry and biochemistry. Heterocyclic compounds offer a high degree of structural
diversity and have proven to be broadly and economically useful as therapeutic agents.
Heterocyclic compounds played a vital role in biological processes and are wide spread
as natural products. They are widely found in nature as well as synthetically produced
heterocycles designed by organic chemists are used for instance as agrochemicals and
pharmaceuticals and play an important role in human life. In most cases the chemist
has specific reasons for synthesizing a particular compound, usually based on
theoretical considerations, medicinal chemistry, biological mechanisms or a
combination of all three. Aromatic heterocycles are of significant interest due to their
presence in advanced pharmaceutical agents, for example, Lipitor, which lowers
cholesterol levels and Plavix, a blockbuster drug used in the treatment of vascular
diseases1, etc...
Heterocyclic compounds offer a high degree of structural diversity and have
proven to be broadly and economically useful as therapeutic agents. Almost unlimited
combinations of carbon, hydrogen and heteroatoms can be designed, making available
compounds with the most diverse physical, chemical and biological properties. Since
diverse organic molecules of animal and plant origins have predominance of nitrogen
and oxygen heterocycles proved their utility in different fields.
In the recent years much attention has been focused on the synthesis of
heterocycles containing oxygen atom because of their biological and medicinal
importance including ontological research. They are widely distributed in nature and
are essential for life.
Amongst all the oxygen heterocyclic’s, coumarins and its analogues occupy an
important position, the coumarins (2H-chromen-2-ones, 2H-1-benzopyran-2-ones)
Chapter-I
2
(Fig-1.1) are among the best-known oxygen heterocycles, well represented as a
structural motif in numerous natural products2.
O O1
2
3
45
6
7
8
Fig-1.1
The isolation of coumarin was first reported by Vogel3 in Munich in 1820. The
name coumarin originates4 from a Caribbean word ‘coumarou’ for the tonka tree,
which was known botanically at one time as ‘coumarouna odoratea Aubl’ and it acts as
a structural subunit of more complex natural products5. These molecules generally have
a broad range of technological6,7 and biological activities which includes
1. Anticancer8-18
2. Anticoagulant and Cardiovascular19-22
3. Antiviral23-27
4. As Enzyme Inhibition28-32
5. Antimicrobial and Molluscicidal33-46
6. Antioxidant47-50
7. Effect on Central Nervous System151-53
8. Anti-inflammatory54-58
9. Anti-HIV59-63
10. For Alzheimer’s disease64
11. Used as dyes65
Chapter-I
3
Naturally, there has been a continuous effort to develop new, convenient and
versatile syntheses of coumarins with defined structural features. Classical routes to
coumarins incorporate Pechmann66-68, Knoevenagel69-71, Perkin72-73, Reformatsky74 and
Wittig75-77 condensation reactions. Among these reactions, Pechmann reaction is the
most widely used method for the preparation of substituted coumarins since it proceeds
from very simple starting materials and gives good yields of various substituted
coumarins. And also substituted coumarins can be prepared by using various reagents
such as H2SO4, POCl378, AlCl3
79, Cation exchange resins, trifluoro acetic acid80,
Montmorillonite Clay81, solid acid catalysts82, W/ZrO2 solid acid catalyst83,
Chloroaluminate ionic liquid84 and Nafion-H catalyst85.
Coumarin nucleus possesses diversified biological Activities; few are briefly
summarized as under:
Name Structure Activity
Aminocoumarin
O O O
O
NH2
O
OH
OH
O
NH
O
OH
Antibiotic
Brodifacoum
O O
OH
Br
Anticoagulant
Warfarin
O
OH
O
O
Anticoagulant
Chapter-I
4
Tioclomarol
O
OH
O
OH
Cl
S
Cl
Anticoagulant
Cloricromen O O
N
Cl
OO
O
Platelet aggregation
inhibitor
Seselin OO O
Anti cancer
Neo Tanshinlactone
O O
O
Anti cancer
Calanolide-A OO O
O R
OH
Anti HIV
Bergapten
O O
O
OCH3
Alzheimer’s
disease agent
Batoprazine O
O
N
NH
Anti aggressive
agent
Chapter-I
5
Since last two decades a rapid progress in synthetic organic chemistry is
associated with a search for new compounds with desired properties. Such compounds
are widely used in pharmaceutical industries. Among these, the heterocycles form the
largest of the classical division of organic chemistry and are of immense biological and
industrial importance. Analysis of scientific papers in the last two decades revealed that
there is a general trend in research for new drugs involving modification of existing
biologically active matrices and molecular design of the structures of compounds.
Both naturally occurring and synthetic coumarins have attracted intensive
attention from chemists due to their broad spectral properties and potential for
biological activities. The never-ending thrust in this area is made me to synthesis of
coumarin derivatives and physiological interest of those compounds.
Burger86 stated that “the great advances of medicinal chemistry have been
achieved by two types of investigators: those with the genius of prophetic logic, who
have opened a new field by interpreting correctly a few well-placed experiments,
whether they pertained to the design or the mechanism of action of drugs and those
who have varied patiently the chemical structures of physiologically active compounds
until a useful drug could be evolved as a tool in medicine.”
In the present thesis, we explore the methods for synthesis and biological
activities of new Triazole, Tetrazole, Oxadiazole and Pyrazole derivatives of
coumarins.
Triazole Introduction:
A survey on the triazole derivatives reveals that these compounds possess
biological activities, and the synthetic utility of substituted groups depends on their
stereochemistry. Generally triazols are 1,2,3-triazol, 1,2,4-triazol and 1,3,5-triazol
systems are present almost all, all types of triazols are having a wide range of
applications. Members of 1,2,3-triazol family have been widely used as antifungal and
antimicrobial agents87, antihypertensive agents88, anti-AIDS agents89, and potassium
channel activators90.
Chapter-I
6
Compounds of 1,2,4-triazole derivatives are found to be associated with diverse
pharmacological activity. Recently, some new triazole derivatives have been
synthesized as possible anticonvulsants, antidepressants, tranquilizers, and plant-
growth regulators91-93. Some of the iron (II) complexes containing substituted 1,2,4-
triazole ligands are spin-crossover materials, which could be used as molecular-based
memory devices, displays, and optical switches94-95. The 1,2,4-triazole nucleus has
recently been incorporated into a wide variety of therapeutically interesting drugs96,
including H1/H2 histamine receptor blocker, cholinesterase active agents, CNS
stimulants, antianxiety agents, and sedatives. Substituted 1,2,4-triazoles have been
actively studied as bridging ligands coordinating through their vicinal N atoms. The
complexes containing 1,2,4-triazole ligands possess specific magnetic properties97-99.
On the other hand, some of the 1,2,4-triazole derivatives have anti-inflammatory
activities100 and some are antifungal agents101.
Scheme-1: Potential pharmaceuticals based on triazoles
N
R1
R2
R3
R4 O
NN
N
H
OH
N
N
N NN R
RR
F
HIV Protease Inhibitors Antituberculosis
OH
N
NN
N
N
N
F
F
NN
N
O
Antifungal Anticancer
Chapter-I
7
Cl
Cl
O
O
N
NN
O N N N N
N
O
Antifungal
Scheme-2: Potential pharmaceuticals based on 1,2,3-triazoles with lactam rings
SN
NN
OO
O
H
COOH
HO
NH2 HN
O N
S
COOHN
NN
O
H
Tazobactam Cefatrizine
Tetrazole Introduction:
Tetrazole and its derivatives have important applications in major areas, such as
medicine, agriculture and imaging technology, and are very stimulating heterocycles
from an academic viewpoint.
Despite the high nitrogen content, tetrazole and most of its derivatives are
relatively stable, on heating or under microwave irradiation and also in the presence of
various chemical reagents (oxidants, acids, bases, alkylating agents, dienophiles, etc.).
In naturally occurring molecules, the tetrazole fragment is virtually lacking. Yet, its
presence in metabolic products of some protozoa was reported102. It is postulated that
tetrazole, alongside other unusual polynitrogen heterocycles, may be formed under the
natural conditions of other planets of the Solar system or their satellites, provided that
they contain hydrocarbons and nitrogen in the composition of the atmosphere or on the
surface102.
The tetrazolyl system is to the same extent unusual in structure and unique in
acid-base characteristics. For instance, compared with other thermally and chemically
stable azoles, tetrazoles possess abnormally high acidity and very weak basicity102–113.
Chapter-I
8
In the tetrazole ring, the four nitrogen atoms connected in succession may be involved
in protolytic processes, and many physical, chemical, physicochemical, and biological
properties of tetrazoles are closely related to their ability to behave as acids and bases.
In fact, most medical applications of tetrazoles stem from the acidic properties of the
tetrazolyl ring. The tetrazolic acid fragment, –CN4H, has similar acidity to the
carboxylic acid group, – CO2H, and is almost allosteric with it, but is metabolically
more stable at physiologic pH. Hence, synthetic methodologies leading to the
replacement of –CO2H groups by –CN4H groups in pharmacologically active
molecules are of major relevance114. The tetrazole ring is found in drugs or drug
candidates with antihypertensive, antiallergic and antibiotic activity115–117, or of use as
anticonvulsants118, in cancer or in AIDS treatments119,120. Tetrazoles are also used in
agriculture as plant growth regulators, herbicides and fungicides121. Due to the high
enthalpy of formation, tetrazole decomposition results in the liberation of two nitrogen
molecules and a significant amount of energy. Therefore, several tetrazole derivatives
have been explored as explosives, propellant components for missiles and as gas
generators for airbags in the automobile industry122. In addition, various tetrazole-based
compounds have good coordination properties and are able to form stable complexes
with several metal ions 123. This ability is successfully used in analytical chemistry for
the removal of heavy metal ions from liquids, and in chemical systems formulated for
metal protection against corrosion 124. Furthermore, the tetrazole ring has strong
electron-withdrawing properties and, as such, tetrazolyl halides have been successfully
used in synthesis as derivatising agents for the chemical modification of alcohols 125–
130.
Tetrazoles are also particularly interesting compounds because they exhibit a
very rich photochemistry. The photochemistry of matrix-isolated unsubstituted
tetrazole was studied by Maier and co-workers and published in 1996131.
Candida albicans is an opportunistic and often deadly pathogen that invades
host tissues, undergoes a dimorphic shift, and then grows as a fungal mass in the
kidney, heart or brain. It is the fourth leading cause of hospital-acquired infection in the
Chapter-I
9
United States and over 95% of AIDS patients suffer from infections by C. albicans132.
Candida albicans is the predominant organism associated with candidiasis; but other
Candida species, including C. glabrata, C. tropicalis and C. krusei, are now emerging
as serious nosocomial threats to patient populations133. Existing antifungals can treat
mucosal fungal infections but very few treatments are available for invasive diseases.
The current antifungal therapy suffers from drug related toxicity, severe drug
resistance, non-optimal pharmacokinetics, and serious drug-drug interactions. The
common antifungal drugs currently used in clinics belong to polyenes and azoles.
Polyenes (amphotericin B and nystatin) cause serious host toxicity134 whereas azoles
are fungistatic and their prolonged use contributes to the development of drug
resistance in C. albicans and other species135,136. Because of all these striking problems,
they developed novel antifungal drugs with higher efficiency, broader spectrum,
improved pharmacodynamic profiles and lower toxicity.
Scheme-3: Potential pharmaceuticals based on tetrazole rings
Cl
NN
NN
NN
H H
OR
Antifungal
N
NN
NHN
N
O
N O
N
N
Cl
NN
N
S
HN
Angiotensin (AT1) receptor antagonist Antimicrobial
Oxadiazole Introduction:
The oxadiazole motif is an important pharmacophore within medicinal
chemistry and can be regarded as a bioisosteric, and metabolically stable, replacement
Chapter-I
10
for an ester unit. Indeed, the 1,2,4-oxadiazole is present in several notable drug
molecules, including antitussive drugs, such as Perebron137 1, and Libexin138 2, as well
as the serotonin agonist 3, for the treatment of migraine139 and L-690548, 4, for the
treatment of Alzheimer's disease.
Scheme-4: Therapeutic compounds containing the 1,2,4-oxadiazole unit
Et2N
O N
NPh
N
O N
N
CHPh2
Ph
NO
N
NH
NEt2
NN
NO
(1) (2)
(3) (4)
Data from the World Organization of Health show a significant rise in drug-
resistant tuberculosis140-142. Tuberculosis (TB) is one of the leading causes of death and
suffering worldwide among the infectious diseases. The ever increasing drug
resistance, toxicity and side effects of currently used anti-tuberculosis drugs and the
absence of their bactericidal activity highlight the need for new, safer and more
effective anti-tuberculosis drugs143-147. The computer-aided prediction of biological
activity in relation to the chemical structure of a compound is now a commonly used
technique in drug discovery148-153. Modern drug discovery also relies on the interface of
chemical and biological diversity through high throughput screening154. Generation of
functional molecular diversity to probe biological activity space requires robust
molecular scaffolds that are low in molecular weight and are easily modified to create a
variety of chemically diverse, biologically active potential drugs155-156.
Additionally, compounds containing the oxadiazole motif have been the subject
of interest as novel 5-HT3 antagonist157. A number of such compounds have been
Chapter-I
11
shown to be effective in the control of cancer chemotherapy-induced emesis158, and
evidence suggests therapeutic benefits towards migraine159, schizophrenia160, and
anxiety161.
Along with 1,2,4-oxadiazole compounds 1,3,4-oxadiazole unit containing
molecules also currently used in clinical medicine are like raltegravir (5), an
antiretroviral drug162, nesapidil (6) an anti-arrhythmic therapy163, furamizole (7) a
nitrofuran derivative that has strong antibacterial activity164 and tiodazosin (8) an
antihypertensive drug165. Therefore, considering the range of potential biological
applications, the formulation of more efficient synthetic strategies to access
functionalised compounds containing the 1,2,4-oxadiazole motif has emerged as an
attractive preparative goal.
Scheme-5: Potential pharmaceuticals based on 1,3,4-oxadiazole system
N
N
HN
O
NN
O
O
OH
HN
O
FN
N
O
OH
O
ON
N
(5) (6)
O
N N
OO
O2N
NH2
(7)
N
NMeO
MeO
NH2
N
N
O
O
NN
S
(8)
Pyrazole Introduction:
The chemistry of pyrazoles has been reviewed by Jarobe in 1967. Pyrazoles
have attracted attention of medicinal chemists for both with regard to heterocyclic
chemistry and the pharmacological activities associated with them. Pyrazole have been
studied extensively because of ready accessibility, diverse chemical reactivity, broad
Chapter-I
12
spectrum of biological activity and varieties of industrial applications. As evident from
the literature in recent years a significant portion of research work in heterocyclic
chemistry has been devoted to pyrazoles containing different alkyl, aryl and heteroaryl
groups as substituents.
Pyrazoles belong to the family of azoles, i.e. five-member ring containing only
nitrogen and carbon atoms, ranging from pyrrole to pentazole. According to Albert’s
classification, they are π-excessive, N-hetero aromatic derivatives and according to
Kauffmann’s arenology principle, as a substituted carbon, they are analogues of amines
and as substituted nitrogen they are analogues of halogens, i.e. pseudo halogens.
Synthesis of pyrazole and its N-aryl analogs has been a subject of consistent interest
because of the wide applications of such heterocycles in pharmaceutical as well as in
agrochemical industry166-168. Numerous compounds containing pyrazole moiety have
been shown to exhibit anti-hyperglycemic, analgesic, anti-inflammatory, antipyretic,
anti-bacterial and sedative-hypnotic activities169-171.
Scheme-6: Potential pharmaceuticals based on pyrazole system
NN
COOH
Cl
N
NN
CH3
H3C
O
O
OH
F
Lonazolac Pyrazole mevalonolactone
(Anti-inflammatory) (Hypocholesterolemic effect)
Chapter-I
13
NN
(CH2)3N(CH3)2
N
CH3
N
H3C
HN
Cl
OH
N
N
CH3
NHO
NCH3
Fezolamine (Antipsychotic) Granisoton
(Antidepressant) (Antagonist)
Pyrazoles belong to an important class of heterocycles due to their biological
and pharmacological activities172-173, such as anti-inflammatory174, herbicidal175,
fungicidal176, bactericidal176, plant growth inhibitory175, antipyretic177, and protein
kinase inhibitory activities178. Also, they are the key starting materials for the synthesis
of commercial aryl/hetero-arylazopyrazolone dyes179-180. Many other authors have
reported other biological activities181-185
The great importance of these oxygen heterocyclics: triazole, tetrazole,
oxadiazole and pyrazoles compounds drive us to concentrate on the development of
new compounds in the area of heterocyclic chemistry. Present thesis has been discussed
the details of synthesis and activity studies. The detailed study of this work was
reported in the later chapters.
Chapter-I
14
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