chapter 12 dna technology and the human genome. do now: 10 minutes study technique skim chapter...
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![Page 1: Chapter 12 DNA Technology and the Human Genome. Do Now: 10 minutes Study Technique Skim chapter opening pg 230-231 1) Define bold words and look at pictures](https://reader036.vdocuments.us/reader036/viewer/2022062421/56649d2e5503460f94a065d1/html5/thumbnails/1.jpg)
Chapter 12DNA Technology and the Human Genome
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Do Now: 10 minutesStudy Technique
• Skim chapter opening pg 230-231• 1) Define bold words and look at pictures• 2) Make a quick outline of main points with at
least 3 spaces in between in one color• 3) Use a different color to fill in under each
section with details from the book• 4) In a different color come up with two
questions, one easy and one difficult
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Should look like this….
• Recombinant DNA technology: combining genes from different sources• DNA technology: methods for studying and manipulating DNA• Genomics: Study of genomes based on sequence
– Bioinformatics: using math to analyze bio data– Proteomics: study of proteins
• Bacteria studies– Joined by pilli (male) passing DNA to “female”– Respond to environment– Lederburg and Tatum: experiments that mixed genes in E. coli (Recombinant
DNA technology– DNA technology
• Introns discovered by this• Lead in to HGP
• Human Genome project (more than just humans)– Mapping genomes lead to genomics, bioinformatics, and proteomics– Scientists engineer bacteria for practical purposes (make pesticides, cancer
drugs, AIDS vaccine)– Ethical issues on health
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What might Ms. Bell Ask…
• Easy: How do bacteria have sex?• Hard: Why is this advantageous for bacteria?
• Easy: Describe the difference between genomics, proteomics, and bioinformatics
• Hard: Why are people concerned with recombinant DNA technology? Explain a hypothetical situation.
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12.1 In nature, bacteria can transfer DNA in three ways
• Gene transfer– DNA from one to another bacteria– Non-reproductive – new combination– DNA= closed loop w/protein
• Three mechanisms– 1) Transformation: uptake from surrounding
• Griffith experiment: harmless bacteria take up piece from deadly and became deadly….
– 2) Transduction: phage– 3) Conjugation: Male donor, pili
• Female recipient• Cytoplasmic bridge
• New DNA may integrate into recipient
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• Question… Which type of gene transfer allows one copy of DNA to peel off and transfer to recipient?
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12.2 Bacteria plasmids can serve as carriers for gene transfer
• F factor– Genes for conjugation– Also contains origin of replication– Acts as the leading end of transferred chromosome
• Plasmid– Small circular DNA that contains origin of replication– Some contain F factor– Vector s: Can carry genes other than F factor
• R plasmid– Contain enzymes that destroy antibiotics like penicillin or
tetracycline– Act as useful vectors in genetic engineering
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LE 12-02Restriction enzyme
recognition sequence
Restriction enzymecuts the DNA intofragments
Addition of a DNAfragment fromanother source
DNA G CA AT T
T
T
CG
GC
C
CGG
AA
AA
AAT TT TAA
T
T
Sticky end
Two (or more)fragments sticktogether bybase-pairing
DNA ligasepastes the strand
Recombinant DNA molecule
GG
GG C
CC
CAAAA
AATT
TTTT
T T AA
C T T A A GHow restriction enzymes work…
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LE 12-01-3
Bacterialchromosome
Plasmid
BacteriumPlasmidisolated
Recombinant DNA(plasmid)
Recombinantbacterium
Copies of gene
Clone of cellsGene for pestresistanceinserted intoplants
Gene used to alter bacteriafor cleaning up toxic waste
Protein used to dissolve bloodclots in heart attack therapy
Copies of protein
Cell multiplies withgene of interest
Protein used tomake snowform at highertemperature
Plasmid put intobacterial cell
DNAGene ofinterest
Gene insertedinto plasmid
DNAisolated
Cell containing geneof interest
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12.3 Plasmids are used to customize bacteria: An overview
• 1) plasmid isolated• 2) DNA of interest is obtained• 3) DNA inserted • 4) Bacteria uptakes plasmid• 5) genetically engineered, recombinant bacteria
cloned
• Challenge: How can R plasmids be helpful in terms of recombinant DNA technology?
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LE 12-03Isolate DNAfrom two sources
Cut both DNAswith the samerestriction enzyme
Mix the DNAs;they join bybase-pairing
Add DNA ligaseto bond the DNA covalently
Recombinant DNAplasmid
E. coli
Plasmid
Human cell
Sticky endsGene V
DNA
Gene V
Put plasmid into bacteriumby transformation
Recombinantbacterium
Clone the bacterium
Bacterial clone carrying manycopies of the human gene
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LE 12-04
Recombinantplasmid
Bacterialclone
Plasmid library
Phageclone
Phage library
Recombinantphage DNA
Genome cut up withrestriction enzyme
or
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12.7 Reverse Transcriptase helps make genes for cloning
• Do Now: Turn to page 236 section 12.7• 1) Read the section• 2) Redraw the picture• 3) Describe cDNA and the process of making a
cDNA• 4) Why might cDNA of insulin might work
better in E.coli than trying to use a normal gene?
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LE 12-05
Cell nucleus
mRNA
Test tube
DNA ofeukaryoticgene
Reverse transcriptase
cDNA strand
cDNA of gene(no introns)
RNAtranscript
Exon Exon ExonIntron Intron
Transcription
RNA splicing(removes introns)
Isolation of mRNAfrom cell and additionof reverse transcriptase;synthesis of DNA strand
Breakdown of RNA
Synthesis of secondDNA strand
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12.8 Nucleic acid probes identify clones carrying specific genes
• It is difficult to tell if clone contains ________________________– Methods depends on base pairing
• Part of the DNA is known• Gene _________• Probe (radioactive) _________
– Steps: • 1) _________________________________• 2) Treat (heat or alkali) to ___________________• 3) Add radioactive probe (reality ___________________)• 4)Autoradiography (develop film to determine radioactivity)• 5) Compare to master plate (____________________)
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LE 12-08
Radioactiveprobe (DNA)
Single-strandedDNA
Mix with single-stranded DNA fromvarious bacterial(or phage) clones
Base pairingindicates the gene of interest
A
A
T A
T
C
C C G
G
A
AT
CC
G
AA
A
AG
G
GG
CT
T
G
G
G
GC
C
C
A
A
A
T
T
T
T
C
C
TT
A T
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12.9 DNA microarrays test for expression of many genes
• DNA microarrays (chips)– Used for______________________________– Measures gene expression at _______________– Steps• ______________________• mRNA used to make radioactive ________• Exposed to a chip
– Benefits• Thousands of genes tested at once• Each radioactive spot represents gene expression
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LE 12-09
mRNAisolated
cDNA madefrom mRNA
cDNA appliedto wells
UnboundcDNA rinsedaway
Each well contains DNAfrom a particular gene
Fluorescentspot
DNA microarray
Nonfluorescentspot
cDNA
DNA of anexpressed gene
DNA of anunexpressed gene
Reverse transcriptaseand fluorescent DNAnucelotides
Actual size(6,400 genes)
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12.10- 12.11 Gel electrophoresis:
Mixture of DNAmolecules of different sizes
Powersource
Gel
Completed gel
Longermolecules
Shortermolecules
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12.12 The PCR method is used to amplify DNA sequences
• Polymerase chain reaction• Steps:
– _____________________– DNA is incubated
with____________________________________________
• Benefits:– Each cycle doubles DNA
amount– Takes hours – Can copy specific segment– Starting material does not
need to be purified
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PCR: The good and the bad
• Even though it is faster, it cannot replace gene cloning in cells due to occasional errors that impose limits
• Uses:– ________________________– ________________________
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12.13 Most of the human genome does not consist of genes
• Most of our DNA does not code for protein– 35,000 genes that code for protein, tRNA and
rRNA– 97% is non-coding
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• Types of junk– __________and DNA between genes– Repetitive DNA
• Short repeats– Associated with ________________and ends of chromosomes
(chromosome structure)– Telomeres: at the end of chromosomes and related to cell death and
cancer– Cells that can regenerate telomeres can “_______________”
• Might deal with gene ___________________• Some nervous diseases caused by abnormal stretches of triplet
– Huntington's: _____ repeat in coding region
• Long Repeats: function unknown– Example: Transposons: genes that can jump from one location to the
next (researcher Barbara McClintock)» Cut and paste or ______, cut and paste (leaves sequence behind)» Natural mutagen to generate ________________» Implicated in some cancer
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LE 12-11b
Longerfragments
1
x
Shorterfragments
w
y y
z
2
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LE 12-12a
Defendant’sblood
Blood fromdefendant’s clothes
Victim’sblood
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LE 12-13Cloned gene(normal allele) Insert normal gene
into virus
Viral nucleicacid
Retrovirus
Infect bone marrowcell with virus
Viral DNA insertsinto chromosome
Bone marrowcell from patient
Bonemarrow
Inject cellsinto patient
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LE 12-14
InitialDNAsegment
Number of DNA molecules
1 2 4 8
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12.4-12.6 Recombinant Lab
• Add picture from each….
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