cenh3 evolution reflects meiotic symmetry as predicted by ... · cenh3 evolution reflects meiotic...

CenH3 evolution reflects meiotic symmetry as predicted by the centromere drive model

František Zedek, Petr Bureš

Supplementary File S3 – The alignments and phylogenetic trees that were used for selection analyses in nexus format

#NEXUS[ Title ]begin taxa;

dimensions ntax=18;taxlabels

Aspergillus_acidusAspergillus_aculeatusAspergillus_brasiliensisAspergillus_clavatusAspergillus_flavusAspergillus_fumigatusAspergillus_glaucusAspergillus_kawachiiAspergillus_nidulansAspergillus_nigerAspergillus_sojaeAspergillus_sydowiiAspergillus_terreusAspergillus_tubingensisAspergillus_versicolorAspergillus_wentiiAspergillus_zonatusNeosartorya_fischeri

;end;begin characters;

dimensions nchar=969;format missing=? gap=- matchchar=. datatype=nucleotide;matrix

Aspergillus_acidusATGCCCCCCAAGACA???GGTCGCGGT??????CGCAAG??????ACGGCGGCG------------------------CCGCGA------------------------------------------CAATCAACAGCT------------------------------------------------------------GGCGACCGTGCT------------------------------???GCAAGCTCC------TCCACA------------------GCA---GCTACAACG------------------------GCCTCGCCG---------------------------------------------------------GCG---------------------------------------------------GCCAAGAAAGTG---CGCAAATCCACT---GGA---GCG------------ACTAGG------------------GGAGGGAAAAGGCCTGCTGGAAAGGCACCC---------------------------------------AGAGAG---TCCGATGTT------------------CAGCCTGGTGACCCTACACCACAAGGACGTGTACGCCGCTACAAGCCCGGAACCGTGGCTCTCAAGGAGATCCGCAAGTACCAACGCTCGTACGATCTGCTTATCCAAAAGCTTCCTTTCGCTCGGCTGGTCCGCGAGGTCGCGCTTGACCTCCTCCCTTCAGAAGTTGGCGCCGAGCTGCGGTGGCAGTCGCATGCGATCCAAGCGCTCCAGGAAGCAGCCGAAGCTTTCCTTGTACATCTCTTCGAGGACACCAACCTCTGCGCGATTCACGCCAAGCGCGTGACCATCATGCAGAAAGATATCCAACTTGCTCGACGCATCCGTGGTGTCTGGGGTGGTTTGGGC

Aspergillus_aculeatusATGCCGCCTAAGACAGGG---------CGCGGTCGCAAGTCAATT---GCTGGG------------------------CCACGG------------------------------------------AAA?????????------GCCGCCGCCGCCGCCGCCGCCACTACTGCTGCTGCTACT---------------???GATGGT???---------------GCC---------GCTGCTGCCGGCCCG------TCAACT------------------GCC---CCAGCTACG????????????------------------CCC---------------------------------------------------------GCC---------------------------------------------------GCTCGC---???---CGTAAACCTGCG---GGT---GTC------------ACCAGA---------------------???AAGCGACCGGCTAAA---GCGCCC---------------------------------------AGGACA---TCCAATGTT------------------GAACCGGGCGATCCCACCCCCACAGGTCGTCGTCGCCGGTACAAACCTGGAACGGTTGCCCTGAAGGAGATCCGCCATTACCAACGCTCATTCGACCTGCTCATCCGAAAGCTGCCATTCGCGCGACTGGTCCGCGAGGTTGCCTTGGATCTTCTCCCCGCTGAAGTCGGCTCCGAGCTGCGCTGGCAATCGCATGCGATCTTGGCCCTCCAGGAAGCCGCCGAGGCGTTCCTGGTCCATCTTTTCGAGGACACCAATCTCTGTGCCATTCATGCCAAGCGCGTGACCATCATGCAAAAGGATATCCAGCTTGCTCGACGCATCCGGGGTGTCTGGGGTGGTCTGGGT

Aspergillus_brasiliensisATGCCCCCCAAGACA??????------??????CGCAAG??????GTGGCGGCG------------------------CCGCGA------------------------------------------CAATCAACAGCT------------------------------------------------------------GGCGACCGTGCT------------------------------???GCAAGCTCC------TCGAAA------------------GCA---GCTGCAACG------------------------ACATCGCCG---------------------------------------------------------GCG---------------------------------------------------GCGAAGAAAGTG---CGCAAATCCACT---GGA---CCG------------GCTAGG------------------GGAGGGAAAAGACCTGCTGGAAAGGCGCCC---------------------------------------AGACAG---TCCGATGTT------------------CAGCCTGGTGACCCCACGCCACAAGGACGTGTGCGCCGCTACAAGCCCGGAACTGTGGCTCTTAAAGAGATCCGCAAGTACCAGCGCTCGTACGATCTGCTTATTCAAAAGCTTCCTTTTGCTCGGCTGGTCCGCGAGGTCGCGCTTGACCTCCTCCCTTCAGAAGTTGGCGCTGAGCTGCGGTGGCAGTCACATGCGATCCAAGCGCTTCAGGAAGCAGCCGAAGCTTTCCTCGTACATCTCTTTGAGGATACCAATCTCTGTGCTATCCACGCCAAGCGCGTGACCATCATGCAGAAAGATATCCAACTTGCTCGACGCATCCGTGGTGTCTGGGGTGGTTTGGGC

Aspergillus_clavatusATGCCACCAAAGACAGGA---------CGGGGCCGGAAGGCAGTC---??????GGAAGA------------------??????------------AAA---------------------------------------------------------------------------------------------------???---------GAA------------------------------???GGCCCC------TCAGAC------------------GCA---CCTGCGACT------------------------GCATCACCT---------------------------------------------------------TCG---------------------------------------------------ACCCGAGGCCAG---CGCAAGTCAAGC---GGA---GCG------------ACAAGG------------------GGGGGCAAGCGACCGGCCGGC---GCACCG---------------------------------------AGAAAA---TCAGACGTT------------------CAACCTGGAGACCCAACCCCTCAAGGTCGCCCACGCCGATACCGACCGGGAACGGTTGCCCTGAAAGAGATCCGCAAATATCAGCGCTCGTACGATCTGCTCATCCAAAAGTTACCCTTTGCGCGACTCGTCCGCGAGGTCGCCTTGGACCTCCTCCCCACCGAGGTCGGCGCCCAATTGCGATGGCAGTCGCATGCAATCCAAGCGCTCCAGGAAGCTGCTGAAGCTTTCCTGGTCCATCTGTTCGAGGACACCAATCTCTGCGCCATCCATGCTAAGCGCGTAACAATCATGCAGAAAGATATTCAGCTTGCTCGAAGAATTCGCGGTGCTTGGGGTGGCCTGGGT

Aspergillus_flavusATGCCACCGAAGACAGGA---------GGAGGTCGCAAGGTAATC---GCCGCA------------------------TCGCGA------------------------------------------------------GCAAAG------------------------------------------------------???GACGGT???---------------???AAAGAAAGC???------------------------------------------------??????AAA------------------------GGGTCCCCT---------------------------------------------------------TCG---------------------------------------------------ACTCGAGGA------CGCAAGTCCGCT---GGA---GGT------------GCCAGA------------------GCGGGGAAGCGACCGGCTGGT---GCATCG---------------------------------------AGGAAA---TCAGATGTC------------------CAACCTGGCGATCCTACCCCTCAGGGCCGCCATCGCCGTTACAGACCGGGCACTGTTGCCCTCAAAGAAATCCGCAAATACCAACGTTCTTATGACCTCCTTATACGAAAGCTCCCATTCGCAAGACTTGTGCGCGAAGTTGCATTGGATCTACTCCCCGCAGATGTAGGATCCGAATTGCGCTGGCAGTCGCAAGCCATCATGGCGCTGCAGGAGGCCGCGGAAGCCTTTCTTGTTCATCTATTCGAGGACACGAACCTGTGTGCTCTACACGCGAAGCGAGTGACTATCATGCAGAAAGATATCCAGCTTGCTCGGAGAATCCGTGGCGCTTGGGGTGGATTAGGC

Aspergillus_fumigatusATGCCGCCGAAGACTGGA---------CGAGGACGTAAAGCAATT---GGGGCT------------------------CCTCGAACCCAACCTCGA------------------------------------------------------------------------------------------------------????????????---------------------------------???GGTCCA------TCTAAC------------------GCT---GCGGCTACA------------------------GCATCACCT---------------------------------------------------------TCT---------------------------------------------------ACTCGGGGA???CCGCCCAAATCTCGC---GGG---GGA------------ACAAGG------------------GGGGGAAAGCGACCAGCCCAC---GCCCCG---------------------------------------AGGCCG---TCAGACGTC------------------CAACCTGGGGACCCAACCCCTCAAGGTCGCCGACACCGGTACAAGCCGGGAACCGTCGCATTGAAAGAGATCCGCAGATACCAGCGCTCATATGACCTCCTTATTCAGAAGCTACCCTTTGCGCGACTCGTACGCGAGGTCGCATTGGAACTTCTTCCCGCCGAAGTAGGCGCGGAGCTACGGTGGCAGTCGCACGCTATTCAGGCGCTACAGGAGGCCGCCGAAGCTTTCCTCGTCCACCTTTTCGAGGATACCAATCTCTGTGCTTTGCATGCTAAGCGTGTAACGATTATGCAGAAAGATATCCAGCTCGCCCGAAGAATACGCGGTATTTGGGGCGGTCTGGGT

Aspergillus_glaucusATGCCACCAAAGACAGGA---------AAAGGCCGTAAAGTCGTC---TCAGAA------------------------CCGCGA---------------------------------------------------------------------------------------------------TCGCGCCCCAGCACC????????????---------------------------------GCAGGCCCA------TCA---TCAAAACCGCAACAA---------------ACC------------------------GCGTCGCCA---------------------------------------------------------???AACAAAAGGAAACCCAAGGCTTCC---------------------------???------------------------TCC???GAA???AGA------------------------------------???AAGCGGCCATCGGGA---??????AAAACA??????------------GCAGCAAAGACAGCA??????---TCAGACGTC------------------CAACCCGGCGACCCAACCCCCCAAGGCCGTTCACGCCGCTACAAACCCGGAACCGTCGCTCTAAAAGAAATCCGCAAATACCAACGCTCCTTCGACCTCCTCATCCAAAAGCTCCCCTTCGCGCGCCTCGTCCGTGAAGTCGCCCTGGAACTGCTCCCCGCAGACGTAGGCGAACAGCTCCGGTGGCAGTCGCATGCGATCCAAGCACTACAAGAAGCCGCAGAGGCATTCCTCGTCCATTTATTCGAAGATACTAATTTGTGTGCTCTGCATGCTAAGCGCGTGACTATTATGCAAAAGGATATCCAGCTTGCACGGAGGATTCGTGGTGCTTGGGGTGGATTGGGA

Aspergillus_kawachiiATGCCCCCCAAGACA???GGTCGCGGT??????CGCAAG??????ACGGCGGCG------------------------CCGCGA------------------------------------------CAATCAACAGCT------------------------------------------------------------GGCGACCGTGCT------------------------------???GCAAGCTCC------TCAACA------------------GCA---GCTATAACG------------------------GCCTCGCCG---------------------------------------------------------GCG---------------------------------------------------GCCAAGAAAGTG---CGCAAATCCACT---GGA---GCG------------ACTAGG------------------GGAGGGAAAAGGCCTGCTGGAAAGGCACCC---------------------------------------AGGGAG---TCCGATGTT------------------CAGCCTGGTGACCCTACACCACAAGGACGTGTACGCCGCTACAAGCCCGGAACCGTGGCTCTCAAGGAGATCCGCAAGTACCAACGCTCGTACGATCTGCTTATCCAAAAGCTTCCTTTCGCTCGGCTGGTCCGCGAGGTCGCGCTTGACCTCCTCCCTTCAGAAGTTGGCGCCGAGCTGCGGTGGCAGTCGCATGCGATCCAAGCGCTCCAGGAAGCAGCCGAAGCTTTCCTTGTACATCTCTTCGAGGACACCAACCTCTGCGCGATTCACGCCAAGCGCGTGACCATCATGCAGAAAGATATCCAACTTGCTCGACGCATCCGTGGTGTCTGGGGTGGTTTGGGC

Aspergillus_nidulansATGCCCCCAAAA------------------?????????---------------------CCATCCTCG------------------------------------------------------------------------------------------------------------------------------------------------------------???---------??????GCAGGT???GGAAGC??????---------------GCG???---?????????ACAACCTCCACCACAACCTCAGGC?????????AAGGTAACTAAGAGCTCCAGAACATTAGGGTCAAAGGCATTGGCATCGGCATCGGTG???---------------------------------------------------------------------AAATCT------------------------------AAG------------------GGAAGTAAGCGACCA------------CCG---------------------------------------ACG???CCATCA??????------CAATCCAGCATC???CCCGGCGACCCAACCCCCAAAGGCCGTCGTCACCGGTACAAACCTGGTACCGTTGCCCTCAAAGAAATCCGCAAGTACCAACGCTCCTACGATCTGCTTCTCCGAAAATTGCCATTTGCACGTCTCGTCCGCGAAGTTGCTCTCGACATCCTCCCCGCAGACGTTGGCTCCGAGCTGCGATGGCAGTCGCATGCAATCCAGGCGCTCCAGGAAGCCGCTGAAGCCTTTTTGGTACACTTGTTCGAGGACACGAATCTTTGCGCCATCCACGCGAAACGAGTTACGATAATGCAGAAGGATATCCAGCTTGCGCGTAGGATTCGCGGAGCTTGGGGTGGTCTTGGC

Aspergillus_nigerATGCCTCCCAAGACA??????------???GGTCGCAAG??????GTGGCGGCG------------------------CCGCGA------------------------------------------CAATCAACAGCT------------------------------------------------------------GGCGACCGTGCT------------------------------???GCAAGCTCG------TCGAAA------------------GCA---GCTGCAACG------------------------ACGTCGCCG---------------------------------------------------------GCA---------------------------------------------------GCTAAAAAAGTG---CGCAAATCCACT---GGA---CCG------------GCTAGG------------------GGAGGGAAAAGGCCTGCTGGAAAGGCACCC---------------------------------------AGAGAG---TCCGACGTT------------------CAGCCTGGTGATCCCACACCACAAGGACGTGTACGCCGCTACAAGCCTGGAACCGTGGCTCTCAAAGAGATCCGCAAGTACCAGCGCTCTTATGATCTGCTTATCCAAAAGCTTCCTTTTGCTCGGCTGGTCCGCGAGGTCGCTCTTGACCTCCTCCCTTCAGAAGTTGGCGCCGAGCTGCGGTGGCAGTCGCATGCGATCCAAGCGCTCCAAGAAGCAGCCGAAGCTTTCCTTGTACATCTCTTCGAGGACACCAACCTCTGTGCTATTCACGCCAAGCGCGTGACCATCATGCAGAAAGATATCCAACTTGCTCGACGCATTCGTGGTGTCTGGGGTGGTTTGGGC

Aspergillus_sojaeATGCCACCGAAGACAGGA---------AGAGGTCGCAAGGTAATC---GCCGCA------------------------TCGCGA------------------------------------------------------GCAAAG------------------------------------------------------???GACGGT???---------------???AAAGAAAGCGCAGCTGCAGGCCCA------TCCGGT------------------GCA---GCTGCAAAA------------------------GACTCCCCT---------------------------------------------------------TCG---------------------------------------------------ACTCGAGGA------CGCAAGTCCACT---GGA---GGT------------GCCAGA------------------GCGGGGAAGCGACCGGCTGGT---GCATCG---------------------------------------AGGAAA---TCAGATGTC------------------CAACGTGGCGATCCTACCCCTAAGGGCCGCCATCGCCGTTACAGACCGGGCACTGTTGCCCTCAAAGAAATCCGCAAATACCAACGTTCTTATGACCTCCTTTTACGGAAGCTCCCATTCGCAAGACTTGTGCGCGAAGTTGCATTGGATCTACTCCCCGCAGATGTAGGATCCGAATTGCGCTGGCAATCGCAAGCCATCATGGCGCTGCAAGAGGCCGCGGAGGCCTTCCTTGTTCATCTATTCGAGGACACGAACCTGTGTGCTCTACACGCGAAGCGAGTGACTATCATGCAGAAGGATATCCAGCTTGCTCGGAGAATCCGTGGCGCTTGGGGTGGACTGGGC

Aspergillus_sydowiiATGCCTCCGAAA------------------?????????---------------------CCAGCCTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------???ACCGCCGGGCCC------TCG------------------------------------????????????ACAACAACAGGC??????CCC---------------------------------------------------------GCT---------------------------------------------------------------------AAATCCGCC---GGA---???---AAAAAAGGT??????GGAGTCCAGGGAACCACGGGGGGGAAGCGACCA------------CCA---------------------------------------AGGACA---TCA??????------CAATCAGATGTT???CCCGGAGACCCAACCCCCAAAGGCCGCCGTCACCGGTACAAGCCCGGCACCGTCGCCCTGAAGGAAATCCGCAAGTACCAGCGCTCATACGATCTCCTCCTCCGAAAACTTCCCTTTGCACGATTAGTGCGCGAGGTCGCATTGGACCTTCTCCCCGCAGAAGTCGGCGCGGAGCTGCGGTGGCAGTCGCATGCAATCCTTGCGCTCCAAGAGGCTGCCGAGGCCTTCCTAGTACACTTGTTCGAGGACACCAATCTATGCGCCATCCACGCGAAACGGGTTACGATCATGCAGAAGGATATCCAGCTTGCGCGCAGAATTCGTGGGGCGTGGGGTGGTCTAGGC

Aspergillus_terreusATGCCACCCAAAACAGGG---------CGAGGCCACAAGATCACC---GCCGCG------------------------CCCCGG---------------ACAGAGGCAAGCAGCAGTCGTACCACC---------------------------------------------------------------------------------------------------GCC---------GCCGCCGCCGGCCCG------TCG---------------------------------???------------------------GCGTCGCCG---------------------------------------------------------TCC---------------------------------------------------GCCCACAGGGTG---CGCAAATCCACC---GGA---CCA------------TCCAGA------------------GGCGGGAAGCGACCGGCCGGC---GCGCCG---------------------------------------AGAGAC---TCCGACGTT------------------CAACCCGGCGATCCCACCCCGACCGGTCGTCGTCGCCGCTACCGACCTGGCACCGTCGCCCTCAAGGAAATCCGCAAGTACCAACGGTCATATGACCTCCTCATTCAGAAGCTCCCCTTCGCGCGACTCGTCCGTGAAGTCGCACTCGATATCCTCCCCGCCGAGCGCGGCGCCGAGCTCCGTTGGCAGTCGCATGCCATCCAGGCCCTCCAGGAGGCCGCCGAGGCGTTCCTGGTGCACCTGTTCGAGGACACGAACTTGTGCGCCCTGCACGCGAAACGAGTCACCATCATGCAGAAGGATATCCAGCTTGCGCGACGAATTCGCGGTGTGTGGGGTGGTTTGGGC

Aspergillus_tubingensisATGCCCCCCAAGACA???GGTCGCGGT??????CGCAAG??????ACGGCGGCG------------------------CCGCGA------------------------------------------CAATCAACAGCT------------------------------------------------------------GGCGACCGTGCT------------------------------???GCAAGCTCC------TCAACA------------------GCA---GCTACAACG------------------------GCATCGCCG---------------------------------------------------------GCG---------------------------------------------------GCCAAGAAAGTG---CGCAAATCCACT---GGA---GCG------------ACTAGG------------------GGTGGGAAAAGGCCTGCTGGAAAGGCACCC---------------------------------------AGAGAG---TCCGATGTT------------------CAGCCTGGTGACCCCACACCACAAGGACGTGTACGCCGCTACAAGCCCGGAACCGTGGCTCTCAAGGAGATCCGCAAGTACCAGCGCTCGTACGATTTGCTTATCCAAAAGCTTCCTTTCGCTCGGCTGGTCCGCGAGGTCGCGCTTGACCTCCTCCCTTCAGAAGTTGGCGCCGAGCTGCGGTGGCAGTCGCATGCGATCCAAGCGCTCCAGGAAGCAGCCGAAGCTTTCCTTGTACATCTCTTCGAGGACACCAACCTCTGTGCGATTCACGCCAAGCGCGTGACCATCATGCAGAAAGATATCCAACTTGCTCGACGCATCCGTGGTGTCTGGGGTGGTTTGGGC

Aspergillus_versicolorATGCCTCCGAAA------------------?????????---------------------CCGGCCTCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------???ACAGCCGGACCC------TCGAAA------------------ACG---CCCGCA---------------------------??????CCC---------------------------------------------------------TCC---------------------------------------------------------------------AAATCCGCC---GGA---???---AAAAAAGGT??????------------------GGGGGGAAGCGA???------------------------------------------------------AGGACA---TCA??????------CAACCAGATGTT???CCCGGAGACCCAACCCCCAAAGGCCGCCGCCACCGGTACAAGCCCGGCACCGTCGCCCTCAAGGAAATCCGCAAGTACCAACGCTCATATGATCTTCTCCTCCGAAAACTCCCCTTCGCACGATTAGTGCGCGAGGTCGCATTGGACCTCCTCCCCGCAGAAGTCGGCGCGGAGCTACGGTGGCAGTCGCATGCAATCCTTGCGCTCCAAGAAGCCGCCGAGGCCTTCCTGGTACATTTGTTCGAAGACACGAATTTATGCGCCATCCACGCGAAACGGGTTACGATCATGCAGAAGGATATCCAACTTGCGCGTAGAATTCGCGGGGCGTGGGGTGGTCTAGGC

Aspergillus_wentiiATGCCACCAAAGACCGGT---------CGAGGCAATAAGATTATC---GCTGCT------------------------CCCAGA------------------------------------------------------GCAAAG---------------------------------------------------------------???---------------???AAGGAAGAGGCGGAGGCAGGTCCA------TCAAGA------------------GCAAGCCCTGCGACC------------------------GCGTCGCCA---------------------------------------------------------GCA---------------------------------------------------ACCCGAGGCCGA---CGCAAGTCCGCT---GGT---GCA------------AGCAGA------------------GGAGGAAAGAAACCCGCTGGA---??????AAA---??????GCAAAACCATCA---------------??????---???GATGTC------------------CAGCCCGGAGACCCTACCCCTCAAGGTCGTCGTCATCGATACAAGCCAGGAACCGTTGCCCTGAAAGAGATCCGTAAATACCAGCGCTCCTATGATCTGCTGATCCAGAAGCTTCCCTTTGCGCGACTCGTGCGTGAGGTTGCGTTGGAGCTTCTCCCCGCCGACGTGGGAGCAGAGCTGCGATGGCAGTCACATGCGATCCAGGCCCTGCAGGAAGCTGCAGAGGCTTTCCTTGTCCATCTCTTCGAGGATACAAACCTGTGCGCTCTACACGCTAAGCGTGTTACCATCATGCAGAAGGATATTCAGCTTGCCCGAAGAATCCGCGGTGCCTGGGGTGGATTGGGT

Aspergillus_zonatusATGCCGCCTAAGACGGGG---------CGAGGCCGCAAGATGCTT---GCGGCG---------------CAAGCGCGCCCACGG------------------------------------------????????????------------------------------------------------------------????????????---GACGGTGATGGG???---------GCTGCCGCGGGTCCG------TCG---------------------------------------------------------------------------------------------------------------------------------------------------------TCGCGCAACGATGGCGCAACGAAACCC???CGAGGAGGT---CGCAAGTCG------???---???------------ACGAGG------------------GGAGGGAAACGTCCC------------CCT---------------------------------------GGG???------------AGCGGG???TCGAACATC???CCGGGCGATCCCACCCCGAAAGGCCGTCGTCACCGATACAAGCCAGGCACCGTCGCCCTGAAGGAAATCCGAAAGTACCAGCGCTCATATGACCTACTGTTGCGCAAGCTGCCCTTTGCACGGCTTGTCCGCGAGGTCGCCCTGGAGCTATTACCGGCCAACGTGGGCGCCGAATTGCGCTGGCAGTCGCACGCGATCCAGGCTCTGCAGGAAGCCGCCGAGGCCTTCCTGGTCCATCTCTTCGAAGACACCAATCTGTGCGCCCTGCACGCCAAGCGCGTTACCATAATGCAAAAGGATATCCAGCTAGCGCGGAGAATACGTGGTGTATGGGGCGGCCTGGGT

Neosartorya_fischeriATGCCGCCGAAGACTGGA---------CGAGGACGTAAAGCAATT---GGGGCT------------------------CCTCGAACGCAACCTCGA------------------------------------------------------------------------------------------------------????????????---------------------------------???GGTCCA------TCTAAT------------------GCT---GCGGCCACT------------------------GCATCACCT---------------------------------------------------------TCC---------------------------------------------------ACTCGGGGA???CCGCCCAAGTCCCGC---GGA---GGA------------ACAAGG------------------GGGGCCAAGCGACCAGCCCGC---GCCCCA---------------------------------------AGGCCG---TCAGACGTC------------------CAACCTGGGGACCCAACCCCTCAAGGTCGCCGACACCGGTACAAGCCGGGCACAGTCGCATTGAAAGAGATCCGCAAATACCAGCGCTCATATGACCTCCTTATTCAGAAGCTACCGTTTGCGCGACTCGTACGCGAGGTCGCATTGGAACTTCTCCCCGCTGAAGTAGGCGCGGAGCTACGGTGGCAGTCGCACGCTATTCAGGCGCTACAGGAGGCCGCCGAAGCTTTCCTCGTCCATCTTTTCGAGGATACCAATCTCTGTGCTTTGCATGCTAAGCGTGTAACGATTATGCAGAAAGATATCCAGCTCGCCCGAAGAATACGCGGTGTTTGGGGCGGTCTGGGA

;end;

BEGIN TREES;TREE tree = (Aspergillus_acidus,Aspergillus_kawachii,(Aspergillus_tubingensis,(Aspergillus_brasiliensis,(Aspergillus_niger,(Aspergillus_terreus,(((Aspergillus_clavatus,(Aspergillus_fumigatus,Neosartorya_fischeri)),((Aspergillus_glaucus,Aspergillus_wentii),(Aspergillus_flavus,Aspergillus_sojae))),(Aspergillus_aculeatus,(Aspergillus_zonatus,(Aspergillus_nidulans,(Aspergillus_sydowii,Aspergillus_versicolor))))))))));

END;

Aspergillus



Carthamus_tinctoriusCichorium_intybusFlaveria_vaginataHelianthus_annuusHelianthus_exilis_CHES4473Lactuca_sativaTaraxacum_koksaghyz



Carthamus_tinctoriusATGGCGAGAACCAAACAACCTGCTAAACGCAGTTCTGGCAAGCGT---GAT------GCTAGACCATCTACC------TCCACGCCTACGCCAAGGCCAAGTGCAAGGAAGAATCCC---GAGAGCTCAGGAGCTGGGGATGGTCAG------AGGCGCCATCGTTATAGGCCTGGGACTCAGGCGCTTCGTGAGATTAGGCGCTTGCAGAAGACTGTCAATCTTCTCATTCCGGCTGCTCCTTTCATTCGAACCGTAAAGGAGATAAGCAACTACATTGCGCCAGAAGTCACTCGCTGGCAAGCTGAAGCTCTACAAGCCCTTCAAGAGGCAGCAGAAGATTACTTAATTCAGTTGTTTGAAGATTCAATGCTATGCGCGATTCATGCAAAACGCGTTACCCTCATGAAAAAGGATTGGGAGTTGGCACGGCGGCTTGGGAAGAAAGGGCAACCGTGG

Cichorium_intybusATGGCGAGAACAAAGCAACCTGCTAAACGGAGTTGGGGCAATCGAAAGTCTAGTCAATCTCGAGCATCA???TCAACT??????AGTACGCCACGAAAAAGTCCGAGAAAGGATCCA---GGG------???ACTGGAGAAAGG???CAACAG???CCCCATCGTTTCAAGCCTGGGGCTCAAGCACTTCGTGAAATTCGTCGTCTTCAGAAGACTGTTAATCTTCTCATTCCAGCTGCCCCATTCATTCGAACTGTAAAAGAAATAAGCAACTACATTGCCCCTGAAGTTACACGCTGGCAAGCTGAAGCTATACAGGCCCTTCAAGAGGCAGCAGAAGATTACTTAGTTCAGTTGTTTGAAGATTCAATGCTATGTTCGATTCATGCAAAGCGTGTTACCCTCATGAAAAAGGACTGGGAATTGGCACGGAGACTTACAAAGAAAGGTCAACCATGG

Flaveria_vaginataATGGCGAGAACCAAACACCCTGCTAAACGAAGTTGGGGCACTAGAAAAGAT------GGTAGAGCATCTACT------TCAACGAGCACTCCGAGGAAAAGCCCTAGGAAGGATGCA---GGGGGTTCTGGAACTGGAGAAAAGCAG------AGGCCCCATCGGTTTAAGCCTGGGACTCAGGCACTTCGGGAGATTAGGCGTTTGCAAAAGACGGTCAATCTTCTCATTCCTGCTGCTCCCTTCATTCGAACTGTGAGGGAGATAAGCAACTACCTGGCCCCTGAAATCACTCGCTGGCAAGCTGAAGCTTTACAAGCCCTTCAAGAGGCAGCAGAAGATTACATAATTCAGTTGTTTGAAGATTCAATGCTATGCGCAATTCATGCAAAACGTGTTACCCTTATGAAAAAGGATTGGGAGTTGGCACGGCGTCTCGGGAAGAAAGGGCAGCCATGG

Helianthus_annuusATGGCGAGACCCAAACCACCTGCTAAACGCAGTTCAGGCATACCAGCAGAC------GGTAGATCATCC?CT------TCACCAAACACACCAAGAAAGAGTCCGAGGAAGAATCGAGTAGGT------------GGAGAAAACAGG------AAGCCGCATAGGTTTAAGCCTGGGACACAGGCGCTACGTGAGATTAGGCGTTTGCAGAAGACGGTTGAACTGATCATTCCGGCTGCTCCGTTTATTCGAACTGTAAAGGAGATAAGCAACTACATGGCCCCTGAAATCACTCGCTGGCAAGCCGAAGCTCTACAAGCCCTTCAAGAGGCAGCAGAAGATTACCTAATTCAGTTGTTTGAAGACTCAATGCTATGTGCGATTCATGCAAAGCGCGTTACCCTCATGAAAAAGGATTGGGAGTTGGCACGGCGGATTGGTAAGAAAGGGCAGCCATGG

Helianthus_exilis_CHES4473ATGGCGAGAACCAAACACCCTGCTAAACGCAGTTCAGGCATACCAGTAGAC------GGTAGATCATCCACT------TCAACAAACACACCAAGAAAGAGTCCGAGGAAGAATCGA---GGT------------GGAGAAAACAGG------AAGCCGCATAGGTTTAAGCCTGGGACACAGGCGCTACGTGAGATTAGGCGTTTGCAGAAGACGGTTGAACTGATCATTCCGGCTGCTCCGTTTATTCGAACTGTAAAGGAGATAAGCAACTACATGGCCCCTGAAATCACTCGCTGGCAAGCCGAAGCTCTACAAGCCCTTCAAGAGGCAGCAGAAGATTACCTAATTCAGTTGTTTGAAGACTCAATGCTATGTGCGATTCATGCAAAGCGCGTTACCCTCATGAAAAAGGATTGGGAGTTGGCACGGCGGATTGGGAAGAAAGGGCAGCCATGG

Lactuca_sativaATGGCGAGAACCAAACAACCTGCTAAACGAAGTTGGGGCAAGCGACAATCT------GCTGGAGCATCA???TCAACC??????AGTACGCCACGGAAATCTCCGAGAAAGGATCCA---GGGAGTTCAGGAACTGGACAGAGG???AAACAG???CCCCATCGTTTTAAGCCTGGAACTCAAGCACTTCGTGAGATTCGTCGTCTTCAGAAGACTGTTAACCTTCTCATTCCAGCTGCTCCTTTCATTCGAACTGTAAAAGAGATAAGCAACTACATTGCCCCTGAAGTTACACGTTGGCAAGCTGAAGCTCTACAAGCCCTTCAAGAGGCTGCAGAAGATTACATAGTTCAGTTGTTTGAAGATTCAATGTTGTGCTCGATTCATGCAAAGCGTGTTACCCTGATGAAAAAGGACATGGAATTGGCTAGAAGGCTTACGAAGAAAGGGCAACCATGG

Taraxacum_koksaghyzATGGCGAGAACCAAACAACCTGCTAAACGGAGTGCGGGCAATCGAACACCT------GCTCAAGCATCA???TCAACT??????AGTACGCCGCGAAGAAGTCCGAGAAAGGTTACA---GGGAGTTCGGGAACGGGAGAAAGG???AAACAG???CCCCATCGTTTTAAGCCTGGTACTCAGGCACTTCGTGAGATTCGTCGTCTCCAGAAGACCGTTAATCTACTCATTCCAGTCGCTCCATTCGTACGAACTGTAAAGGAAATAAGCAACTACATTGCCCCTGAAGTCACACGCTGGCAAGCTGAAGCTCTACAATGCCTTCAAGAGGCAGCAGAAGATTACTTAATCCGATTGTTTGAAGATTCAATGCTATGTGCGATTCATGCAAAACGTGTTACCCTCATGCAAAAGGATTTGGCATTGGCACGAAGGCTTACAAAGAAAGGGCAGCCATGG

;end;

BEGIN TREES;TREE tree = (Carthamus_tinctorius,(Taraxacum_koksaghyz,(Cichorium_intybus,Lactuca_sativa)),(Flaveria_vaginata,(Helianthus_annuus,Helianthus_exilis_CHES4473)));

END

Asteraceae



Esox_luciusHaplochromis_burtoniLates_calcariferMicropterus_floridanusMisgurnus_anguillicaudatusNeolamprologus_brichardiNothobranchius_furzeriOncorhynchus_mykissOphthalmotilapia_ventralisOreochromis_niloticusSalmo_salar



Esox_luciusATG???CGCCGCGATCTT???ACTTCCACTGCAAGTCGACGCAAGGGCAAGGCACCAAAGCGTCGGCCTCCAGTCCCAGCCCTGCCCGCTTCA------------------CCACGGCGGAGTGGACCTTTAGCCTCTGCAGGTCCT????????????------???AAGAAGAAAAGGTTCCGCCCCGGCACCCGAGCTCTGATGGAGATCCGGAAGTACCAGAAGAGTACCGACTTGCTTCTGCGGAAGGGACCGTTTGCACGCCTGGTTCGGGAGGTGTGCCAGACGTTTAGCAGGGACTACATGAGATGGCAGGTGTATGCCCTACTGGCCTTGCAGGAAGCTGCGGAGGCTTTCCTTGTGTTATTGTTTTCTGATGCTTACCTCTGTACCATCCACGCCAAGCGTGTAACGCTGTTCCCACGAGACATTCAACTTGCGCGACGAATTCGAGGAGCAGATCATCTC

Haplochromis_burtoniATGCGT------------CATAATTCATCTGCCAGCCGTCGGAAGGGTAAAACCCCTCAACGGCGCCCCCAAGTGCCAGCCCAAAGGACCCCCAGTGTAACATCC------CCAAGACGCAGTGGAGTTCCA---------------GGACAGCCTCCTGTTTCCCCCAAGAAGAGGAAATTTCGACCAGGAACCAGAGCTTTGATGGAGATCCGCAAGTACCAGAAAAGCACAGATCTCCTCCTTAGAAAGGCGCCCTTTGCCCGTTTGGTGCATGAGGTGTGCCAAAGCTTTTCTAGAGAAAATCTTCGATGGCAGGTTTATGCTCTTCTGGCCCTCCAAGAGGCTGCAGAGGCTTTTCTCGTCTTGATATTTTCAGATGCCAACCTGTGTGCCATCCACGCCAAGAGAGTCACTGTATTCCCTCGTGACATTCAGCTAGCCCGGAGGATCCGTGGGGTGGATAATCTG

Lates_calcariferATGCGT------------CATGATTCATCTGCAAGTCGACGGAAGGGCAAAACCCCTCAACGTCGCCCCCCGGTACCCGACCCAGGGCCCTCTGGTTCCACA???AGGACCCCAAGACGAAGCAGAGTTTCA---------------GGCGTACCTCCTGTGTCTCCCAAGAAAAGAAGGTTTCGACCAGGAACCAAGGCCTTAATGGAAATCCGCAAGTACCAGAAGAGCACCGATCTTCTGTTAAGGAAAGGACCCTTCTCTCGTCTGGTTCGTGAGGTGTGCCAAGGTTTTTCCAGAGAGGCTCTCAGGTGGCAGGTCTATGCTCTTCTTGCCCTGCAGGAGGCTGCTGAGGCCTTTCTTGTCATGTTATTCTCAGACGCCAACCTGTGTGCCATCCATGCCAAGCGGGTAACCGTGTTCCCCCGCGACATTCAATTGGCAAGGAGGATCCGTGGGGTGGATAACATG

Micropterus_floridanusATGCGT------------CATGATTCATCAGCCAGCCGCCGGAAGGGGAAAACCCCTCAACGTCGCCCCCCGCAGCCGGCCCCAGAGACC---------------CGGTCCCCAAGACGGAGCAGAGTTTCA---------------AGGCAGCTTCCTGCGTCTCCCAAGAAGAGGAGGTTTCGACCAGGAACCAAGGCCTTAATGGAGATCCGCAAGTTCCAGAAGAGCACTGATCTTTTGCTCAGGAAAGGACCCTTCTCTCGCCTGGTTCGTGAGGTATGCCAGAGTTTTTCCAGAGAGGCTCTCCGGTGGCAGGTCTACGCACTTCTGGCCCTGCAGGAGGCTGCAGAGGCGTTTCTCGTCATGCTATTCTCAGACGCAAATCTGTGTGCCATCCACGCCAAGCGGGTCACCGTGTTCCCCCGTGATATTCAGCTGGCCAGGAGGATCCGCGGCGTTGATAACCTG

Misgurnus_anguillicaudatusATGCGG------------CACAATAAATCAGCA??????????????????ACCCCCAGGCGCAGATCCCCT---CCTGCTACACCAGCAGCACCCTCCACA???AGAACCCGACGCACCAGTGGACCATCC---------------GAGAAA??????------???AAGAAGCACAAGTTTCGACCTGGGACGCGAGCTCTCATGGAGATACGCAAATATCAGAAATCCACAGATCTGTTGTTGCGCAAGGGCCCGTTTTCACGACTGGTACGTGAGGTGTGTCAGACATTTAGCCGGGAGAACTTAATGTGGCAGGGCTATGCACTAATGGCTTTACAAGAGGCTGCAGAGGCGTTCATGGTCCGTTTGTTCTCTGATGCCAATCTCTGTGCTATTCATGCCAAGAGGGTGACATTGTTTCCACGTGATATACAGCTTGCCCGTCGAATCAGAGGTGTTGAAAACATG

Neolamprologus_brichardiATGCGT------------CATAATATATCTGCCGGCCGTCGGAAGGGTAAAACCCCTCAACGGCGTCCCCAAGTGCCAGCCCAAAGCACCTCCAGTGTAACATCC------CCAAGACGCAGTGGAGTTCCA---------------GGACTGCCTCCTGTTTCCCCCAAGAAGAGGAAATTTCGACCAGGAACCAGAGCTTTGATGGAGATCCGCAAGTACCAGAAAAGCACAGATCTCCTCCTTAGAAAGGCGCCCTTTGCCCGTTTGGTTCATGAGGTGTGCGAAAGCTTTTCTAGAGAAAGGCTCCGATGGCAGGTTTATGCTCTTCTGGCCCTCCAAGAGGCTGCAGAGGCTTTTCTCGTCTTGATATTTTCAGATGCCAACCTGTGTGCCATACACGCCAAGAGAGTCACTGTATTCCCTCGTGACATTCAGCTAGCCCGGAGGATCCGTGGGGTGGATAATATG

Nothobranchius_furzeriATGCGT------------CACAGTTCACCGCGCAGCCGGCGGAAGGCCAAAACTCCCAGTCGTCGTGACCCACCTCCATCTCCCACAGCATCA?????????------???CCAAGAAAAAGTGGTTTTTCT---------------GGGATTCCTCCTGTGTCTCCCAAGAAAAGGAGGTACAGACCTGGAACCAGAGCCTTGATGGAGATTCGTAAGTACCAGAAGAGTACCGATCTTCTGCTCAGGAAAGCACCATTCGCTCGCTTGGTTCACGAGGTGTGCCAGAGTTATACCAGAGGCAATTTGCGGTGGCAGGTCTTCGCTCTTCTTGCCCTGCAGGAGGCAGCAGAGGCCTTCCTAGTCCTGCTGTTTTCAGATGCCAACCTGTGTGCCATTCATGCTAAGAGGGTGACTGTGTTTCCTCGGGACATTCAGCTGGCCAGGAGGATCCGTGGAGTGGATCGTCTG

Oncorhynchus_mykissATG???CGTCACGATCCT???AGTTCTTCTGCAAGCCGGCGCAAGGGTGCGGTACCCAAGCGTCGGCCTCCAGCCTCCACCGCGACTGCTTCAACATCAAAG???AAGGCACCACGGCTGAGTGGACCATCGGCCTCTGCTGTTCCA????????????------???AAAAATAGAAGGTTTCGCCCTGGCACCCGAGCTCTGATGGAAATTCGCAAGTACCAGAAGAGCACTGACTTGCTTTTGCGCAAGGCACCGTTTGCACGTCTGGTTCGGGAGGTGTGCCATACTTATACCAGGGACTTCATGAGATGGCAGGTGAACGCTCTTCTGGCCTTGCAGGAGGCTGCAGAGGCTTTCCTTGTTTTACTGTTTTCCGACGCCTACCTGTGTACAATCCACGCCAAGCGTGTAACGCTGTTCCCCCGTGACATTCAGCTTGCCCGGCGAATTCGAGGAGTGGATGACCTC

Ophthalmotilapia_ventralisATGCGT------------CATAATCCATCTGCCAGCCGTCGGAAGGGTAAAACCCCTCAACGGCGCCCCCAAGTGCCAGCCCAAAGGACCTCCAGTGTAACGTCC------CCAAGACGCAGTGGAGTTTCA---------------GGACAGCCTCCTGTTTCCCCCAAGAAGAGGAAATTTCGACCGGGAACCAGAGCTTTGATGGAGATCCGCAAGTACCAGAAAAGCACAGATCTCCTCCTTAGAAAGGCGCCCTTTGCCCGTTTGGTTCATGAGGTGTGCCAAAGCTTTTCTAGAGAAAGGCTCCGATGGCAGGTTTATGCTCTTCTGGCCCTCCAAGAGGCTGCAGAGGCTTTTCTCGTCTTGATGTTTTCAGATGCCAACCTGTGTGCCATCCACGCCAAGAGAGTCACTCTATTCCCTCGTGACATTCAGCTAGCCCGGAGGATCCGTGGGGTGGATAATCTG

Oreochromis_niloticusATGCGT------------CATAATTCATCTGCCAGCCGTAGGAAGGGTAAAACCCCTCAACGGCGCCCCCAAGTGCCAGCCCAAAGGACCTCCAGTGTAACATCC------CCAAGACGCAGTGGAGTTCCA---------------GGACAGCCTCCTGTTTCCCCCAAGAAGAGGAAATTTCGACCAGGAACCAGAGCTTTGATGGAGATCCGCAAGTACCAGAAAAGCACAGATCTCCTCCTTAGAAAGGCGCCCTTTGCCCGTTTGGTTCATGAGGTGTGCCAAAGCTTTTCTAAAGAAAGGCTCCGATGGCAGGTTTATGCTCTTCTGGCCCTCCAAGAGGCTGCAGAGGCTTTTCTCGTCTTGATATTTTCAGATGCCAACCTGTGTGCCATCCACGCCAAGAGAGTCACTGTATTCCCTCGTGACATTCAGCTAGCCCGGAGGATCCGTGGGGTGGATAATCTG

Salmo_salarATG???CGTCGCGATCCT???GTTTCTTCTGCAAGCCGGCGCAAGGGTGCAGTACCCAAGCGTCGGCCTCCAGCCTCCACCGCGACTGCTTCAACATCAAAG???AAGGCACCACGGCTGAGCGGACCATCGGCCCCTGCAGGTCCA????????????------???AAAAAGAGAAGGTTTCGCCCTGGCAACCGAGCTCTGCTGGAAATTCGCAAGTACCAGAAAAGCACTGACTTGCTTTTGCGCAAGGGACCGTTTGCACGCCTGGTTCGGGAGGTGTGCCAGACTTATAGCAGGGACTTCATGAGATGGCAGGTGAACGCTCTTCTGGCCTTGCAGGAGGCTGCAGAGGCTTTCCTCGTTTTACTGTTTTCCGACGCCTACCTGTGTACCATCCACGCCAAGCGTGTAACGCTGTTCCCCCGTGACATTCAGCTTGCCCGGCGAATTCGAGGAGTGGATGATCTC

;end;

BEGIN TREES;TREE tree = (Esox_lucius,(Oncorhynchus_mykiss,Salmo_salar),(Misgurnus_anguillicaudatus,(Nothobranchius_furzeri,((Haplochromis_burtoni,(Oreochromis_niloticus,(Neolamprologus_brichardi,Ophthalmotilapia_ventralis))),(Lates_calcarifer,Micropterus_floridanus)))));

END

Bony Fish



Arabidopsis_arenosa_HTR12Arabidopsis_halleri_subsp._halleri_HTR12B1Arabidopsis_suecica_cenpAArabidopsis_thaliana_HTR12Arabis_hirsuta_cenpA1Brassica_carinata_BrCENH36Brassica_juncea_BrCENH35Brassica_napus_BrCENH38Brassica_nigra_BrCENH32Brassica_oleracea_BrCENH33Capsella_bursapastoris_cenpA1Cardamine_flexuosa_cenpA1Crucihimalaya_himalaica_HTR12Crucihimalaya_wallichii_cenpAEruca_sativa_cenpAgArabidopsis_lyrata_HTR12Lepidium_virginicum_cenpA1Olimarabidopsis_pumila_cenpA1Raphanus_sativus_cenpA1Turritis_glabra



Arabidopsis_arenosa_HTR12ATGGCGAGAACCAAGCATTTCGCTACCAAGTCACGAACTGGGAATCGAACT------GAT???---???GCT---TCATCTTCTCAG---------GCGACAGGTCCGACTACGACCCCGACAACAAGA---GGC---------ACTGAA------------GGTGGA---------------------GATAAT---ACTCAACAAACAAATCCT---ACAACT------------TCACCAGCTACT---------GGTGGAAGG???---------------CCTAGGAGAGCCAGACAGGCTATGCCGCGAGGTTCA---------CAG---AAGAAACCTTATCGATTCAAGCCAGGAACCGTTGCTCTGAGAGAGATTCGACATTTCCAGAAGCAGACAAACCTTCTTATTCCAGCTGCTAGCTTCATAAGACAAGTGAGAAGTATAACTCAT------GCGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTGGCTCTTCAAGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCAGATTCAATGCTCTGTGCTATCCATGCGAGACGTGTTACTCTAATGAGAAAAGACTTTGAGCTTGCACGCCGGCTTGGAGGAAAAGGCAGACCATGG

Arabidopsis_halleri_subsp._halleri_HTR12B1ATGGCGAGAACCAAGCATTTCGCTACCAGGACACGATCTGGGAATCGAACT------GATGCC---AATGCT---TCATCTTCTCAG---------GCGGCAGGTCCGACTACGACCCCGACAACAAGA---GGC---------ACTGAA------------GGTGGA---------------------GATAAT---ACTCAACAAACAAATCCT---ACAACT------------TCACCAGCTACT---------GGTGGAAGG???---------------CCTAGGAGAGCCAGACAGACTATGCCACGAGGTTCA---------CAG---AAAAAGCCTTATCGATACAAGCTAGGAACCGTTGCTCTGAGAGAGATTCGACATTTCCAGAAGCAGACAAACCTTCTTATTCCAGCTGCTAGCTTCATAAGACAAGTGAGAAGTATAACTCAT------GCGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTGGCTCTTCAAGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCAGATTCAATGCTCTGTGCTATCCATGCAAGACGTGTTACTCTAATGAGAAAAGACTTTGAGCTTGCACGCCGGCTTGGAGGAAAAGGCAGACCATGG

Arabidopsis_suecica_cenpAATGGCGAGAACCAAGCATTTCGTTACCAAGTCACGAACTGGGAATCGAACT------GATGCC---AATGCT---TCATCTTCTCAG---------GCGTCAGATCCGACGACGACCCCGACAACAAGA---GGC---------ACTGAA------------GGTGGA---------------------GATAAT---ACTCAACAAACAAATCCT---ACAACT------------TCACCAGCTACT---------GGTGGAAGG???---------------CCTAGGAGAGCCAGACAGGCTATGCCGCGAGGTTCA---------CAG---AAGAAGCCTTATCGATACAGGCCAGGAACCGTTGCTCTGAGAGAGATTCGACATTTCCAGAAGCAGACAAACCTTCTTATTCCAGCTGCTAGCTTCATAAGACAAGTGAGAAGTATAACCCAT------GCGCTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTGGCTCTTCAAGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCAGATTCAATGCTCTGTGCTATCCATGCAAGACGTGTTACTCTAATGAGAAAAGACTTTGAGCTTGCACGCCGGCTTGGAGGAAAAGGCAGACCATGG

Arabidopsis_thaliana_HTR12ATGGCGAGAACCAAGCATCGCGTTACCAGGTCACAACCTCGGAATCAAACT------GAT???GCC???GCT---TCATCTTCTCAG---------GCGGCAGGTCCAACTACGACCCCGACAAGGAGA---GGC---------GGTGAA------------GGTGGA---------------------GATAAT---ACTCAACAAACAAATCCT---ACAACT------------TCACCAGCTACT---------GGTACAAGGAGA------------GGGGCTAAGAGATCCAGACAGGCTATGCCACGAGGCTCA---------CAG---AAGAAGTCTTATCGATACAGGCCAGGAACCGTTGCTCTAAAAGAGATTCGCCATTTCCAGAAGCAGACAAACCTTCTTATTCCGGCTGCCAGTTTCATAAGAGAAGTGAGAAGTATAACCCAT------ATGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTTGCTCTTCAAGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCAGATTCAATGCTCTGTGCTATCCATGCAAGACGTGTTACTCTAATGAGAAAAGACTTTGAACTTGCACGCCGGCTTGGAGGAAAAGGCAGACCATGG

Arabis_hirsuta_cenpA1ATGGCGAGAACGAAGCATTTCGCA------AGACGAGGTCAGAATCGAACA------GATGCT---AACGTT---TCCTCTTCGCCG---------GCGGCAGGTCCGAGTACGACTCCGGCGAGAAGG---GCT---------AGTGAA------------GATGGA---------------------GATGAT---GCTCAACAAACAACTCCT---GCAACT------------TCACCAGCTACT---------GGTAGTAAAAAT---AGTAATGGAGGAGCTAAGAGAACT---------ATGCCACAAAGTTCA---------CAG---AAGAAGCCTCATCGATACAGGCCAGGAACCGCTGCTCTGAGAGAGATTCGCAAATTCCAGAAGTCCACAAAACTTCTAATTCCTGCTGCTAGTTTTATCAGAGAAGTGAAAGATATAACCTATACTTAT------GCTCCTCCGCAAATCACTCGTTGGACAGCTGAAGCTCTTGTAGCTATCCAAGAGGCGGCAGAAGATTACTTAGTTGGTTTGTTCTCAGATTCAATGCTTTGTGCTGTTCATGCAAGACGTGTTACTCTAATGAGAAAAGACTTTGAGCTTGCACGCCGGCTTGGAGGAAAAGGCAGACCATGG

Brassica_carinata_BrCENH36ATGGCGAGAACCAAACATTTCGCTTCCAGGGCACGAGATCGCAATCGAACT------AATGCG---ACTGCT---TCATCTTCG???GCGGCG---???GAAGGTCCGAGTGCGACCCCGACGAGAAGA---GAAGGC------???CAAGATGAA------??????------------------------???---GCTCAACAGAGT---------GCA???CCTACTACAACTCCATCA------------GCCGGTAGAAAAAAAGGA---------GGGACTAAGCGAACTAAACAAGCTATGCCTAAAAGTTCCAAC------AAG---AAGAAGACATTCCGTTACAAGCCTGGAACCGTTGCCCTCAGAGAGATTCGCCATTTCCAGAAGACCACCAAACTCCTTATCCCTGCCGCTAGTTTCATCCGACAAGTGAGAAGTGTCACCCAGATCTTT------GCCCCTCCCGATGTTACCCGTTGGACTGCTGAAGCTCTTATGGCTATTCAAGAGGCGGCTGAAGATTTTTTAATTGGCTTGTTCTCTGATGCTATGCTTTGCGCTATCCACGCAAGACGTGTTACTCTAATGAGAAAAGATTTTGAGCTTGCACGCCGTCTTGGAGGAAAAGGCAGACCATTG

Brassica_juncea_BrCENH35ATGGCGAGAACGAAGCATTACGCATCCAGGGCACGAGATCGCAATCGAAAT------AATGCG---ACTGCT---TCATCTACC???GCGGCG---???GCAAGTCCGAGTGCGACGCCGACGAGAAGA---GGC???AGCAGC???CAA------------GGT???CGT---------------------???---GCTCAACAG------------------------------------------------------------------------------------------------------------AGTTCCAACCAGAAAAAG---AAGAAGTCTTTCCGTTACAAGCCTGGAACCGTTGCTCTCAGAGAGATTCGCCAGTTCCAGAAGACCACCAAACTTCTCATCCCTGCTGCTAGTTTCATCAGAGAAGTGAGAAGTATTACCCATATCCTT------GCTCCTCCCGAAATTACGCGTTGGACTGCTGAAGCTCTTGTTGCTCTTCAAGAGGCGGCAGAAGATTACTTAGTTGGCTTGTTCTCTGATGCAATGCTCTGCGCTATCCACGCAAGACGTGTTACTCTAATGAGAAAAGATTTTGAGCTTGCACGCCGTCTTGGAGGAAAAGGCAGACCATTG

Brassica_napus_BrCENH38ATGGCGAGAACGAAACATTTCGCTTCCAGGGCACGAGATCGCAATCGAACT------AATGCG---ACTGCT---TCATCTTCG???GCGGCG---???GAAGGTCCGAGTGCGACCCCGACGAGAAGA---GAAGGC------???CAA---------------???------------------------???---GCTCAACAGACA---------GCA???CCTACTACGACTCCACCA------------GCCGGTAGAAAAAAAGGA---------GGGACTAAGCGAACTAAACAAGCTATGCCTAAAAGTTCCAAC------AAG---AAGAAGACATTCCGTTACAAGCCTGGAACCGTTGCCCTCAGAGAGATTCGCCATTTCCAGAAGACCACCAAACTTCTTATCCCTGCCGCTAGTTTCATCCGAGAAGTGAGAAGTGTCACCCAGATCTTT------GCCCCTCCCGATGTTACCCGTTGGACTGCTGAAGCTCTTATGGCTATTCAAGAGGCGGCTGAAGATTTTTTAATTGGCTTGTTCTCTGATGCTATGCTTTGCGCTATCCACGCAAGACGTGTTACTCTAATGAGAAAAGATTTTGAGCTTGCACGCCGTCTTGGAGGAAAAGGCAGACCATTG

Brassica_nigra_BrCENH32ATGGCGAGAACGAAGCATTACGCATCCAGGGCACGAGATCGCAATCGAAAT------AATGCG---ACTGCT---TCATCTACC???GCGGCG---???GCAAGTCCGAGTGCGACGCCGACGAGAAGAGGAGGC???AGCAGC???CAA------------GGT???CGT---------------------???---GCTCAACAG------------------------------------------------------------------------------------------------------------AGTTCCAACCAGAAAAAG---AAGAAGTCTTTCCGTTACAAGCCTGGAACCGTTGCCCTCAGAGAGATTCGCCAGTTCCAGAAGACCACCAAACTTCTCATCCCTGCTGCTAGTTTCATCAGAGAAGTGAGAAGTATTACCCATATCCTT------GCCCCTCCCGAAATTACGCGTTGGACTGCTGAAGCTCTTGTTGCTCTTCAAGAGGCGGCAGAAGATTACTTAGTTGGCTTGTTCTCTGATGCAATGCTCTGCGCTATCCACGCAAGACGTGTTACTCTAATGAGAAAAGATTTTGAGCTTGCACGCCGTCTTGGAGGAAAAGGCAGACCATTG

Brassica_oleracea_BrCENH33ATGGCGAGAACCAAACATTTCGCTTCCAGGGCACGAGATCGCAATCGAACT------AATGCG---ACTGCT---TCATCTTCG???GCGGCG---???GAAGGTCCGAGTGCGACCCCGACGAGAAGA---GAAGGC------???CAAGATGAA------??????------------------------???---GCTCAACAGAGT---------GCA???CCTACTACAACTCCATCA------------GCCGGTAGAAAAAAAGGA---------GGGACTAAGCGAACTAAACAAGCTATGCCTAAAAGTTCCAAC------AAG---AAGAAGACATTCCGTTACAAGCCTGGAACCGTTGCCCTCAGAGAGATTCGCCATTTCCAGAAGACCACCAAACTCCTTATCCCTGCCGCTAGTTTCATCCGACAAGTGAGAAGTGTCACCCAGATCTTT------GCCCCTCCCGATGTTACCCGTTGGACTGCTGAAGCTCTTATGGCTATTCAAGAGGCGGCTGAAGATTTTTTAATTGGCTTGTTCTCTGATGCTATGCTTTGCGCTATCCATGCAAGGCGTGTTACTCTAATGAGAAAAGATTTTGAGCTTGCACGCCGTCTTGGAGGAAAAGGCAGACCATTG

Capsella_bursapastoris_cenpA1ATGGCGAGAACAAAGCATTTCGCTACGAGGTCCGGACCTCGGACTCCAGCT------GTT---------GCT---TCGTCTTCTCAG---------GCGGCTGTTCCCAGTTCGAGCCCGGCAACAAGA---GGC---------AGAGTA------------GGTGTA---------------------GAC???GCT???CAACAACCAACTCCT---GCAACT------------TCACCTGCTACT---------GCTAAAAAAAAA------------GGGGCGAAGAGAGCTAGATTTGGTAGGCCACAAGGTTCA---------CAAAAA???AAGCCTTACCGTTACAGGCCAGGAACCGTTGCTCTGAGAGAGATTCGCCATTATCAGAAGGGCACTAGCCTTCTTATTCCAGCTGCTGCCTTTATCAGACAAGTGAGAAGTATAACCAAT------GCAGTGGCCCCTCGGGAAGTAAATCGTTGGACAGCTGAAGCTCTTGTGGCTCTTCAAGAGGCGGCAGAAGATTTCTTGGTTGGTTTGTTCTCTGATTCAATGCTCTGTGCTATCCATGCAAGACGTGTTACTCTAATGAGAAAAGACTTTGACCTTGCACGCCGGCTTGGAGGAAAAGGCAGACCCTGG

Cardamine_flexuosa_cenpA1ATGGCGAGAACGAAGCATTTCCCTAACAGGACACGGCCTCGGACTCAAACT------GATGCC---ACTGCT---TCATCTACTCCG---------GCGGCTGGTCCGAGTACGAAGCGGCCAACAAGG---GCC---------AATCAA------------GGT???------------------------???---ACTCAACAAACAAATCCT---ACAACT------------TCACCAGCTACC---------AGTAAAAAGAAA------------GGGGCTAAGAGAACTAGACGGGCCATGCCACAAGGTTCA---------CAA---AAGAAGCCTAATCGTTACAAGCCAGGAACCGTTGCTCTTAGAGAGATTCGCCATTTCCAGAAGAGCACAAATCTTCTGATTCCAGCTGCTAGTTTTATCAGACAAGTGAGAAGTATAACCCAAATGTAT------GCCCCTCCGCAAATTAATCGTTGGACTGCTGAAGCTCTTGTGGCTCTTCAAGAGGCGGCAGAAGATTACTTGATTGGTTTGTTCTCAGATTCAATGCTCTGTGCTATCCATGCAAGACGTGTTACTCTAATGAGGAAAGACTTTGAGCTTGCACGCCGGCTTGGAGGAAAAGGCAGACCATGG

Crucihimalaya_himalaica_HTR12ATGGCGAGAACCAAGCATTTCGCTACTAGGTCACGACCTCGGAATCAAACT------GATGCC---ACTGCT---TCAGCTTCTCAG---------GCGACAGGTCCGAGTACGAACCCGACAACAAGA---GGT---------AGTGAA------------GGTGAA---------------------GATGCT---GCTCGAGGAACAAATCCT---ACAACT------------TCACCAGCTACT---------GGTAGAAAAAAA------------GGGGTTAAGAGGGCCAGACATGCTATGCCACAAGGTTCA---------CAG---AAGAAGCCTTATCGTTACAAGGCAGGAACAGTCGCTCTGAGAGAGATTCGCCATTTTCAGAAGAACACAAACCTTCTTATTCCAGCTGCTAGTTTTATAAGACAAGTGAAAAGTATAACCTAT------GCGGTGGCCCCTCCGCAAATCACTCGTTGGACAGCTGAAGCTCTTGTGGCTCTTCAAGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCAGATTCAATGCTCTGTGCTATCCATGCAAGACGAGTTACTCTAATGAGAAAAGACTTTGAGCTTGCACGCCGGCTTGGAGGAAAAGGTAGACCCTGG

Crucihimalaya_wallichii_cenpAATGGCGAGAACCAAGCATTTCGCTACTAGGTCACGACCTCGGAATCAAACT------GATGCC---ACTGCT---TCAGCTTCTCAG---------GCGACAGGTCCGAGTACGAACCCGACAACAAGA---GGT---------AGTGAA------------GGTGAA---------------------GATGCT---GCTCGAGAAACAAATCCT---ACAACT------------TCACCAGCTACT---------GGTAGAAAAAAA------------GGGGTTAAGAGGGCCAGACATGCTATGCCACAAGGTTCA---------CAG---AAGAAGCCTTATCGTTACAAGGCAGGAACAGTCGCTCTGAGAGAGATTCGCCATTTTCAGAAGAACACAAACCTTCTTATTCCAGCTGCTAGTTTTATAAGACAAGTGAAAAGTATAACCTAT------GCGGTGGCCCCTCCGCAAATCACTCGTTGGACAGCTGAAGCTCTTGTGGCTCTTCAAGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCAGATTCAATGCTCTGTGCTATCCATGCCAGACGAGTTACTCTAATGAGAAAAGACTTTGAGCTTGCACGCCGGCTTGGAGGAAAAGGTAGACCCTGG

Eruca_sativa_cenpAATGGCGAGAACGAAGCATTTTGCATCCAGGGCACGAGATCGCAATCGAAAT------AATGCG---ACAGCT---TCATCTTCC?????????GCG??????GGTCCGAGTGCGACACCGACGAGAAGA---GGCAGC------???CAA------------GGT???---GGTGGTGGTGGTGGTGTT---???---GCTCAACAG------------------------------------------------------------------------------------------------------------GGTTCCAAC---??????---???AAGTCTTTCCGTTACAAGCCTGGAACCGTTGCTCTCAGAGAGATTCGCCATTTCCAAAAGACCACCAAACTCCTTATCCCTGCTGCTACTTTCATCCGACTAGTCAGAAGCATCACC?????????------??????CCCCAAGTTACGCGTTGGACTGCTGAAGCTCTTGTTGCTCTTCAAGAGGCGGCAGAAGATTACTTAGTTGGCTTGTTCTCTGATTCAATGCTCTGCGCTATCCATGCTAAACGTGTTACTCTTATGAGGAAAGATTTTGAGCTTGCACGCCGCCTTGGAGGTAAAGGCAGACCATGG

gArabidopsis_lyrata_HTR12ATGGCGAGAACCAAGCATTTCGCTACCAAGTCACGATCTGGGAATCGAACT------GATGCC---AATGCT---TCATCTTCTCAG---------GCGGCAGGTCCGACGACGACCCCGACAACAAGA---GGC---------ACTGAA------------GGTGGA---------------------GATAAT---ACTCAACAAACAAATCCT---ACAACT------------TCACCAGCTACT---------GGTGGAAGG???---------------CCTAGGAGAGCCAGACAGGCTATGCCGCGAGTTTCA---------CAG---AATAAGCCTTATCGATACAAGCCAGGAACCGTTGCTCTGAGAGAGATTCGACATTTCCAGAAGCAGACAAACCTTCTTATTCCAGCTGCTAGCTTCATAAGACAAGTGAGAAGTATAACTCAT------GCGTTGGCCCCTCCCCAAATCAATCGTTGGACAGCTGAAGCTCTTGTGGCTCTTCAAGAGGCTGCAGAAGATTACTTGGTTGGATTGTTCTCAGATTCAATGCTCTGTGCTATCCATGCAAGACGTGTTACTCTAATGAGAAAAGACTTTGAGCTTGCACGCCGGCTTGGAGGAAAAGGCAGACCATGG

Lepidium_virginicum_cenpA1ATGACGAGAACCAAGCATTACGTTTCGAGGCCACAACCT??????------CGCAAGGATGCC---ACTGTTTCTTCATCTTCTCCG---------GCGGCTGGTACAAGTACGAATCGAACAACAAGG---AGT---------TCT???------GGTGAA???GGA---------------------GATAAT---GCTCAACAAACAATTCCT---ACAACT------------TCACCGGCTACT---------AATAGCAAAAAA------------GGGGCAAAAAGAACCAAAGAAACTATGCCACAAAGTTCA---------AAT---AAGAAAACATATCGATACAAGCCAGGCACCGTTGCTCTGAGAGAGATTCGCCATTTTCAGAAGAGCACAAATCTTCTAATTCCAGCTGCTAGTTTCATAAGAGAAGTGAGATGTATTACTCAG------GCTGTGGCCCCTCCGCAAATCAATCGTTGGACAGCTGAAGCTCTTGTGGCTCTTCAAGAGGCGGCAGAAGACCACGTGGTTGGCTTGTTCTCTGATTCGATGCTTTGTGCTATCCATGCAAGACGAGTTACACTTATGAAAAAAGATTTTGAGCTTGCACGCCGGCTTGGAGGAAAAGGCAGACCATGG

Olimarabidopsis_pumila_cenpA1ATGGCGAGAACCAAGCATAACGCTATCAGGTCACGA------GATCGAACT------GGTGCA---ACTGCT---TCATCATCTCAG---------GCAGCAGGTCCGAGTACGAACCCCACAGCAGGA---GGT---------AGT???---------------------------------------GATGCT---GCTCAACAAACAACTCCT---ACGACT------------TCACCAGCTACT---------GGTAGTAAAAAA------------CGGGCTAAGAGAGCCAGACAGGCTATGCCACGAGGTTCA---------CAG---AAGAAGCCTTATCGTTACAAGCCAGGAACTGTTGCTCTGAGAGAGATTCGCCATTTTCAGAAGACCACTAGCCTTCTTCTTCCAGCTGCTCCTTTTATAAGACAAGTGAGAAGTATAAGCAGT------GCTTTGGCACCTAGGGAAATCACTCGTTGGACAGCTGAAGCTCTTGTGGCTCTCCAAGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCAGATTCCATGCTCTGTGCTATCCATGCAAAACGTGTTACTCTGATGAGAAAAGACTTTGAGCTTGCACGCCGGCTCGGAGGAAAAGGCAGACCATGG

Raphanus_sativus_cenpA1ATGGCGAGAACGAAGCATTTCGCTTCCAGAGCACGAGATCGCAATCAACCT------AATGCG---------------------???GCGGCG---???GCAGGTCCGAGTGCGACACCGACGAGAAGA---GGCAGC------???CAA------------GGT???------------------------???---GCTCAACAGACAACGCCTACCACAACT------------TCACCAGCAACAACCGCCTCCGGTAGAAAAAAA------------GGGACTAAGCGAACTACACAAGCTATGCCTAAAAGTTCC---------AAG---AAGAAGACTTTCCGTTACAAGCCTGGAACTGTTGCCCTCAGAGAGATTCGCCATTTCCAGAAGTCCACCAAACTTCTCATCCCTTCTGCTCCTTTCATCCGAGAAGTCAGAAGTATCACCCACAACCTT------GCCGCTGCCTATGTTACGCGTTGGACTGCTGAAGCTCTTATTGCTCTTCAAGAGGCGGCAGAAGATTTCTTAGTTGGCTTGTTCTCTGATGCAATGCTTTGCGCTATCCATGCAAAACGTGTTACTCTAATGAGAAAAGATTTTGAGCTTGCACGCCGGCTTGGAGGAAAAGGCAGACCCTTT

Turritis_glabraATGGCGAGAACCAAGCATTTCGCTACCAGGTCACGACCTCGGAATCAAACT------GAT---------------TCATCTTCTCAG---------GCGGCAGGTCCGAGTACGAACCCAACAACAGGA---GGT---------AGTGAA------------GGTGGA---------------------GATGCT---GCTCAACAAACAACTCCT---ACGACT------------TCACCAGCTACT---------GGTAGAAAAAAA------------CGGGCTAAGAGAGCCAAACAGGCTATGCCACAAGGTTCA---------CAG---AAGAAGCCTTATCGTTACAAGCCAGGAACCATTGCTCTGAGAGAGATTCGCTATTTTCAGAAGAACACAAACCTTCTTATTCCAGCTGCTAGTTTTATAAGAGAAGTGAGAAGTATAACCCAT------GCGCTGGCCCCTCCGCAAATCTCTCGTTGGACAGCTGAAGCTCTTGTTGCTCTCCAAGAGGCGGCAGAAGATTACTTGGTTGGTTTGTTCTCAGATTCCATGCTCTGTGCAATCCATGCAAGACGTGTTACTCTGATGAGAAAAGACTTTGAGCTTGCACGCCGGATTGGAGGAAAAGGCAGACCATGG

;end;

BEGIN TREES;TREE tree =

(((((Arabidopsis_arenosa_HTR12,(Arabidopsis_suecica_cenpA,gArabidopsis_lyrata_HTR12)),Arabidopsis_halleri_subsp._halleri_HTR12B1),Arabidopsis_thaliana_HTR12),((((Raphanus_sativus_cenpA1,((Eruca_sativa_cenpA,(Brassica_juncea_BrCENH35,Brassica_nigra_BrCENH32)),(Brassica_napus_BrCENH38,(Brassica_carinata_BrCENH36,Brassica_oleracea_BrCENH33)))),Arabis_hirsuta_cenpA1),(Cardamine_flexuosa_cenpA1)),Lepidium_virginicum_cenpA1)),(Turritis_glabra,Olimarabidopsis_pumila_cenpA1),((Crucihimalaya_himalaica_HTR12,Crucihimalaya_wallichii_cenpA),Capsella_bursapastoris_cenpA1));END;

Brassicaceae



Anomodon_attenuatusBryum_argenteumCeratodon_purpureusHedwigia_ciliataLeucodon_brachypusPhyscomitrella_patensPohlia_nutansRhynchostegium_serrulatumRosulabryum_capillareThuidium_delicatulum



Anomodon_attenuatusATGGCGAGGCGGAAGTCGACCCCTCTGCACGGCAACAAACGCGCACCCACCCGC---CCG---------???GCT------GCTGCTGCTGCTGCCTCGACTTCG---------------ACGAGGAGGCCGAGGAAAGCGCACCGATGGAGACCGGGCACCAAGGCGTTGCAGGAGATTCGGCACTACCAGAAGACGTGCGACTTGCTCATCCCCCGACTGCCGTTCGCTCGCTATGTGAAGGAAATCACGTCTATGTATGCGAGTGACGTTTCTCGATGGACGGCGGAGGCTTTGACAGCCCTTCAAGAGGCAACAGAAGACTACATGGTGCATTTGTTTGAAGACACGAATTTGTGTGCCATCCATGCGAAGCGAGTCACCATAATGCCGAAAGATCTGCAGTTAGCCAGACGACTACGAGGTGTCATCGAAAAAACATCA

Bryum_argenteumATGGCGAGGAGGAAATCGACTCCTCGGCATGGCCGGAACCGGGCGTCCACGAGC---GCTGCTGGTGGAGCTGCA------GCA??????------------???---------------GCGCGGCAACGAAGGAGACCGCATCGATGGAGACCAGGCACCAAGGCACTCCAAGAGATTCGGCATTACCAAAAGACATGCGACCTCCTCATACCTAGACTTCCGTTCGCGCGCTATGTGAAAGAAATCACGTCTATGTATGCAAGTGATGTGTCTCGGTGGACGGCTGAAGCTTTAACAGCCCTTCAAGAAGCAACTGAAGATTACATAGTGCATTTGTTTGAAGACACGAATTTGTGCGCTATCCACGCTAAGCGAGTCACCATAATGCCAAAGGACTTGCAATTGGCGAGACGGCTACGCGGTGTGATTGAGAAAACAGTA

Ceratodon_purpureusATGGCGAGGCTGAAGCAGACGCCGCTGCGGAGCAACAACCGGGCGTCGACGAGC---TCTGCTGGTCGAGCTGCA------CCCTCTCCTGCC---------GCTAGAGCGGCACAGCGCGCGCCGCGGCCGAGGAAGCCGCACCGGTGGAGGCCTGGGACTAAGGCGTTGATGGAGATTCGGTACTACCAGAAGACTTGCGACCTGCTCATCCCTCGCCTTCCTTTCGCTCGCTATGTGAAGGAAATTACGTCTATGTACGCAAGTGATGTTTCTCGATGGACGGCAGAAGCGTTGACAGCTCTTCAAGAGGCAACAGAAGACTACATAGTGCATTTGTTTGAGGACACAAATTTGTGTGCTATCCATGCAAAGCGAGTCACCATAATGCCGAAGGATCTGCAGTTGGCCAGACGCCTGCGGGGTGTCATCGAGAAAGCATCA

Hedwigia_ciliataATGGCGAGGCGGAAGTCTACTCCCCTGCATGGCCGCAGACGCGCGTCCACTAGC---TCTGCAGGGGGAGCTGCA------??????---------------???---------------GCGCGGAGGCCTCGGAAACCGCACAGATGGAGACCAGGCACCAAGGCATTGCAAGAGATCCGCCACTACCAGAAGACTTGCGACTTGCTTATTCCTCGACTTCCTTTTGCTCGCTATGTGAAAGAAATCACGTCTATGTATGCAAGTGACGTTTCTCGATGGACGGCGGAGGCTTTGACAGCGCTTCAAGAGGCAACAGAAGACTACATGGTGCATTTATTTGAAGACACAAATTTGTGTGCCATCCATGCGAAGCGAGTCACCATAATGCCGAAGGATCTGCAGTTGGCCAGACGACTACGAGGTTTCATCGAAAAAGCATCA

Leucodon_brachypusATGGCGAGGCGGAAGTCGACCCCTCTGCACGGAGAAAAACGCGCACCTACGCGC---TCG---------???GCT------GCTGCTGCTGCT---------TCT---------------ACGACGAGGCCCAGGAAAGCGCACCGATGGAGACCAGGCACCAAGGCGTTGCAGGAGATTCGGCACTACCAGAAGACGTGTGACTTGCTCATCCCCCGACTGCCGTTTGCTCGCTATGTGAAGGAAATCACGTCTATGTATGCGAGTGACGTCTCTAGATGGACGGCGGAGGCTTTGACAGCCCTTCAAGAGGCAACAGAAGACTACATGGTGCACTTCTTTGAAGACACTAATTTGTGTGCCATCCATGCGAAGCGAGTCACCATAATGCCGAAGGATCTGCAGTTAGCCAGACGACTACGAGGAGTCATCGAAAAAGCATCA

Physcomitrella_patensATGGCAAGAAGGAAAACTACCCCTGTACATGGCAACCACCGAGCTTCTACTAGC---TCTGTTGGTGGAGCTGCG------???------------------------------------------AGGCCCAGGAAGCCGCACCGATGGAGACCCGGGACCAAGGCATTGCAAGAGATCCGCCATTATCAAAAGACGTGCGACCTTCTCATCCCTCGACTACCTTTTGCCCGCTATGTGAAGGAAATTACGATGATGTACGCTAGTGATGTTTCCCGGTGGACTGCGGAAGCTTTGACCGCTCTCCAAGAGGCCACTGAAGATTATATGTGCCATTTGTTTGAAGACACCAATTTGTGTGCTATCCATGCTAAGCGAGTAACCATAATGCCGAAGGATCTGCAGTTGGCCAGACGACTACGAGGTGCCATT????????????

Pohlia_nutansATGGCGAGGCGGAAGTCCACCCCTCTGCACGGCAACAGACGCGCCTCCACGAGC---TCC---------------AATCCTGCTGCTGCTGCT---------GCT---------------CAGCGGAGGCCTCGGAAACCGCACCGATGGAGACCCGGTACCAAGGCGTTGCAAGAGATTCGCCAATACCAGAAGACTGGCGACTTGCTTATCCCCCGCCTCCCGTTTGCTCGCTACGTGAAGGAAATCACGTCAATGTATGCAAGTGACGTTTCTCGATGGACGGCGGAGGCTTTGACAGCCCTTCAAGAGGCAACAGAAGACTACATGGTGCATTTGTTTGAAGACACAAATTTGTGTGCCATCCATGCGAAGCGAGTCACCATAATGCCGAAAGATCTGCAGTTGGCCAGACGACTACGAGGTGTCATCGAAAAAGCATCA

Rhynchostegium_serrulatumATGGCGAGGCGGAAGTCGACTCCTCTGCACGGCAACAAACGCGCACCCACGCGCCCATCT---------???GCT------GGTGCTTCTTCT---------TCT---------------ACGACGAGGCCGAGGAAAGCGCACCGATGGAGACCGGGCACCAAGGCGTTGCAGGAGATTCGGCACTACCAGAAGACGTGCGACTTGCTCATCCCACGACTGCCGTTTGCTCGCTATGTGAAGGAAATCACGTCAATGTATGCGAGTGACGTTTCTCGATGGACGGCGGAGGCTTTGACAGCCCTTCAAGAGGCAACAGAAGACTACATGGTGCATTTGTTTGAAGACACAAATTTGTGTGCCATCCATGCGAAGCGAGTCACCATAATGCCGAAGGATCTGCAGTTAGCCAGACGACTACGAGGTGTCATCGAAAAATCATCA

Rosulabryum_capillareATGGCGAGGAGGAAATCGACTCCTCGGCATGGCCGCAACCGGGCGTCCACGAGC---GCTGCTGGTGGAGCTG?A------GCAGCTGCTGCT---------GCT---------------GCGCGGCAACGAAGGAGACCGCATCGATGGAGACCAGGCACCAAGGCACTCCAAGAGATTCGGCATTACCAAAAGACGTGCGACCTCCTCATTCCTAGACTTCCGTTCGCGCGCTATGTGAAAGAAATCACGTCTATGTACGCAAGTGATGTGTCTCGGTGGACGGCGGAAGCTTTAACAGCCCTTCAAGAAGCAACTGAAGACTACATAGT?CATTTGTTTGAAGACACGAAT??????????????????????????????????????????????????????????????????????????????????????????

Thuidium_delicatulumATGGCGAGGCGGAAGTCGACCCCTCTGCACGGCAACAAACGCACTCCCACTCGC---TCA---------???GCC------GCTGCTGCTGCT---------TCT---------------ACGTCGAGGCCGAGGAAAGCGCACCGATGGAGACCGGGCACCAAGGCGTTGCAGGAGATTCGGCACTACCAGAAGACGTGCGACTTGCTCATCCCCCGACTGCCGTTTGCTCGCTATGTGAAGGAAATCACGTCTATGTACGCAAGTGACGTTTCTAGATGGACGGCGGAGGGT?T?ACAGCCCTTCAAGAGGCAACAGAAGACTACATGGTGCATTTGTTTGAAGACACAAATTTGTGTGCCATCCATGCGAAGCGAGTCACCATAATGCCGAAGGATCTGCAGTTAGCCAGACGACTACGAGGTGTCATCGAAAAAGCATCA

;end;

BEGIN TREES;TREE tree = (Anomodon_attenuatus,(Rhynchostegium_serrulatum,(Leucodon_brachypus,Thuidium_delicatulum)),((Ceratodon_purpureus,(Physcomitrella_patens,(Bryum_argenteum,Rosulabryum_capillare))),(Hedwigia_ciliata,Pohlia_nutans)));

END

Bryophyta



Colletotrichum_eremochloaeColletotrichum_falcatumColletotrichum_higginsianumColletotrichum_somersetensisColletotrichum_graminicolaColletotrichum_sublineolaColletotrichum_zoysiae



Colletotrichum_eremochloaeATGCCTCCCAAGAAGAGACAGTCAGACGCTCCGCGTCGGAAATCTCGTCAGAGCGACGTCCAACCTGGCGACCCTATCCCCAACCGAGGAAGGCGACGTTACAAGCCCGGTACAGTTGCTCTCAGGGAGATCCGAAAGTATCAAAGTGGCACTCAGCTTCTGCTGCGCCAGCTTCCATTCTCTCGCCTTGTACGCGAGATCGCCGAATCGGTGAGACCCCGAGGCGAAGCGATGCGATGGCAATCACAAGCGATACAAGCACTACAAGAAGCTGCGGAGGCTTTCTTGGTACACCTCTTCGAAGACACCAACCTTTGCGCTATCCACGCCAAGAGAGTAACCATAATGCAAAAAGATATTCAGCTCGCAAGGCGCATTCGGGGCGTCTGGGGTGGCCTAGGT

Colletotrichum_falcatumATGCCCTCCAAGAAGAGACAGTCAGACGCTCCGCGTCGGAAATCCCGTCAGAGCGACGTTCAACCTGGTGATCCTATTCCCAACCGAGGAAAGCGACGCTACAAGCCTGGTACAGTTGCTCTCAGGGAGATCCGAAAGTACCAAAGTGGCACTCAACTTTTGCTGCGTCAACTTCCATTCTCCCGCCTTGTACGCGAGATTGCCGAGTCGGTGAGACCCCGAGGCGAAGCAATGCGATGGCAATCACAAGCGATACAAGCACTACAAGAAGCTGCGGAGGCTTTCTTGGTACACCTCTTCGAAGACACCAACCTCTGCGCTATCCACGCCAAGAGAGTAACCATAATGCAAAAAGATATTCAGCTCGCAAGGCGCATTCGGGGCGTCTGGGGTGGGCTAGGC

Colletotrichum_higginsianumATGCCTCCTAGGAAGAGACAGTCGGACGCTTCACGTCGAAAATCGCGCCAGAGTGATGTACAACCTGGTGACCCGATTCCCAACCGAGGCAAGCGACGCTACAGACCCGGCACAGTTGCTCTCAGGGAAATCCGAAAATACCAGAGCGGCACCCAGCTTTTGCTGCGTCAGCTTCCCTTCTCTCGACTTGTCCGCGAAATTGCCGAGTCGGTGAGACCCCGGGGAGAGGCGATGCGGTGGCAATCACAAGCAATACAGGCACTTCAAGAAGCCGCCGAGGCTTTCTTGGTTCACCTATTTGAAGATACAAACCTCTGCGCTATCCACGCCAAGAGAGTGACCATTATGCAAAAGGATATTCAGCTTGCCAGGCGCATTCGGGGCGTCTGGGGTGGATTGGGT

Colletotrichum_somersetensisATGGCCCCCAAGAAGAGACTGTCAGACGCTCCGCGTCGGAAATCCCGTCAAAGCGACGTACAACCTGGCGATCCTATTCCCAACCGAGGAAAGCGACGCTACAAGCCTGGTACAGTTGCCCTCAGGGAGATCCGAAAGTATCAAAGTGGCACTCAGCTTCTGCTGCGCCAACTTCCATTCTCCCGGCTTGTACGCGAAATTGCCGAGTCGGTGAGACCCCGAGGCGAAGCAATGCGATGGCAATCACAAGCGATACAGGCGCTCCAAGAAGCTGCAGAGGCCTTCTTGGTACACCTCTTCGAAGACACCAACCTCTGCGCTATCCACGCCAAGAGAGTAACCATAATGCAAAAAGATATTCAACTCGCGAGGCGCATTCGGGGCGTCTGGGGTGGGCTAGGC

Colletotrichum_graminicolaATGGCCCCCAAAAAGAGACATTCAGACGCTTCGCATCGGAAATCCCGTCAGAGCGACGTGCAACCCGGTGACCCTATTCCCAACCGAGGAAAGCGACGCTACAAGCCTGGTACAGTCGCTCTCAGGGAGATCCGAAAGTATCAAAGTGGCACTCAGCTTCTGCTGCGTCAACTTCCATTCTCTCGTCTTGTACGCGAAATTGCCGAGTCGGTGAGACCCCGAGGCGAAGCAATGCGATGGCAATCGCAAGCGATACAGGCACTCCAAGAAGCTGCGGAGGCCTTCTTAGTACACCTCTTCGAAGACACCAACCTCTGCGCTATCCATGCCAAGAGAGTAACCATAATGCAAAAAGATATTCAGCTCGCAAGGCGCATTCGGGGCGTCTGGGGTGGGCTAGGC

Colletotrichum_sublineolaATGCCTCCCAAGAAGAGACAGTCAGACGCTCCGCGTCGGAAATCTCGTCAGAGCGACGTCCAACGTGGCGACCCTATCCCCAACCGAGGAAGGCGACGTTACAAGCCCGGTACAGTTGCTCTCAGGGAGATCCGAAAGTATCAAAGTGGCACTCAGCTTCTGCTGCGCCAGCTTCCATTCTCTCGCCTTGTACGCGAGATCGCCGAATCGGTGAGACCCCGAGGCGAAGCGATGCGATGGCAATCACAAGCGATACAAGCACTACAAGAAGCTGCGGAGGCTTTCTTGGTACACCTCTTCGAAGACACCAACCTTTGCGCTATCCACGCCAAGAGAGTAACCATAATGCAAAAAGATATTCAGCTCGCAAGGCGCATTCGGGGCGTCTGGGGTGGCCTAGGT

Colletotrichum_zoysiaeATGGCCCCCAAGAAGAGACAGTCAGACGCTCCGCGTCGGAAATCCCGTCAAAGCGACGTACAACCTGGCGACCCTATTCCCAACCGAGGAAAGCGACGCTACAAGCCTGGCACAGTTGCCCTCAGGGAGATCCGAAAGTATCAAAGTGGCACTCAGCTTCTGCTGCGCCAACTTCCATTCTCCCGGCTTGTACGCGAAATTGCCGAGTCGGTGAGACCCCGAGGCGAGGCAATGCGATGGCAATCACAAGCGATACAGGCGCTCCAAGAAGCTGCAGAGGCCTTCTTGGTACACCTCTTCGAAGACACCAACCTCTGCGCTATCCACGCCAAGAGAGTAACCATAATGCAAAAAGATATTCAGCTCGCGAGGCGCATTCGGGGCGTCTGGGGTGGGCTAGGC

;end;

BEGIN TREES;TREE tree = (Colletotrichum_graminicola,(Colletotrichum_somersetensis,Colletotrichum_zoysiae),(Colletotrichum_higginsianum,(Colletotrichum_falcatum,(Colletotrichum_eremochloae,Colletotrichum_sublineola))));

END

Colletotrichum



erectalucipennislutescensmauritianamelanogastermimeticaorenaparaluteaprostipennisrajasekarisechelliasimulanstakahashiiteissieritriluteayakuba



erectaATGCCCCGGCACAATGCTGCCAAGCGT---------AACCCC------------------AACCCATCAATG------------------AACAACTCAAAGCCTCCAAGCGACGACGACAAAGCATTCCGCTCGCCGGAGCCAGAAGACGACACCGACTACGGCCTGGAGTTCACCACCAGCCAACTGACGCTACAGGAGGGC---TACAATCGTCGTTGCTCCACGATGCGC???---------------------------------------CAGCCAGCGACCCGCACTTACACC????????????CAG???GAC------CAGGAGAATCGCCATCCGGCAGCCAGATCAAAGCAGACGCGTCCGACACCC????????????------------------------------------------------------------------------------------------------ACTAGCTCGCGGGAA---------GCGGGACCATTTGCTGCACAG------AACCAG------ACCAGGCGGCGCAAAATGGCCAATCCCATAAGCAGAGCCAAGCGGATGGATCTCGAGATACGGCGACTGCAGAACCATTCCGGCACACTGATACCCAAGCTGCCGTTCTCGCGTCTGGTGCGCGAGTTCATCGTGAAGTACAGCGATGGAGAGCCGTTGAGGGTCTCCGAGGGCGCCTTTATGGCCATGCAGGAGTCCTGCGAGATGTACGTGACGCAGCGGCTGTCGGACTCCTACATGCTAACCCGGCATCGCAATCGCGTGACACTGGAGGTGCGCGACATGGCTCTGATGGCCTACCTTTGCGACCGGGGT------CGGCTGGCC---------

lucipennis???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TACGGCTTGGAGTTCACCACCAGCCGCCTGACGCTGCAAGAGTCC---TCCAATCGCCGCTGCTCCACGATGCGCAAAGAC???---???GGCAGAAGATCACGT---------------???CCGGCTACGGCATCGTCGAGC---GACGAG---GAGGAT------CAGGAAAACCACCAACCGGCAGCGAGATCGCCGCAGACCCGTCGAATGACAAGTCTTCAGGGGAGT????????????---------------------------?????????---------------------------GCCAGGACCCAGGCC???------------???TCAGGT???---??????????????????CAGCAG??????------CCCCGCCGCCGCAAGGCCGTCAATCCCATG???---------???ATGGAGCGCGAAATCAGGCGGCTACAGGCCCATCCCGGC???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????

lutescensATGCCGAGAAAAAGTGGGGCAAACCGCAAGGTGAAC???CCC------------------AAGCCAACG???GGGGACACGGACGCGGGG------------------AGCGACGACGACACGGCCTTCCGATCGCCCGAACCGGAAGATGGCACCGACTACGGCTTGGAGTTCACCACAAGCCGGCTGACTCTGCAGGACTCC---TCCAATCGCCGTTGCTCCACGCTGCGCAAGGACACCAGAAATGACAGG------------------------???GCGGATGGAACCGCCTCCAGC---GAAGAG---GAGGAT------CAGGAGAATCGCCTGCCAGCAGCCAGATCGCCGCAGACGGGACGGATGACCAGTCAGCAG???AGG????????????AGCCAGCAAGAGAGGCGTCCTGCTCCC????????????AGGCGTCCGGCTCCCAGCCAGCCGGTTAGGACTCAAGCATCC------------???------ACC---GGACCAGCTGCTGGCCAG------GATCGG------CACCGCCGACGCAAGATGGCCAACCCCATAAGCAGAGCCAAGCGAATGGATCGCGAGATCCAAAATCTGCAGAAACATCCCGGCACGCTTATACCCAAGCTGCCGTTCTCGCGTCTGGTTCGCGAATTCATCGTCAAGTACAGCGACGGAGAACCGTTTAGGGTCACCGAAGGCGCCTTCAACGCCCTGCAGGTGTCCAGCGAGATGTACGTGACGCAGCGCCTGGCCGACTCCTACATGCTGACCAAGCACCGCAATCGCGTCACGCTGGAGGTGCGCGACATGGCTCTGATGGCTTTGATCTGCGACCGGGGTCACAAC------------------

mauritianaATGCCACGACACAGTAGAGCCAAACGC---------GCACCC------------------AGGCCGTCGGCG------------------AACAACTCAAAGTCGCCGAACGACGACGACACGGCCTTCCACTCGCCGGAGCCAGAAGACGGCACCGACTACGGCCTCGAGTTCACCACCAGCCAACTGACGCTTCAG???------AGCAATCGGCGTTCCTCGACGATGCGCAGGGACGCC---------------------GGACGGAGGCAGTCGCCAACGAATGGTAGCTCCGCCAGTGGC??????---???GAC------CAGGAGAATCGCCATCCCAGAGCCAGACCGTCGCAGACGCGTCGATTGACC????????????------------------------------------------------------------------------------------------------AGCAAGACGCGGGCA---------GCGGGGCCAGTTGCTTGCCAA------AACCAG------ACCAGGCGGCGCAAAGCGGCCAATCCCATGAGCAGAGCCAAGAGGATGGATCGCGAGATCCGGCGACTGCAGCACCATCCCGGCACACTGATACCCAAGCTGCCGTTCTCGCGTCTGGTGCGGGAGTTTATCATGAAGTACAGCGACGGCGAGCCGCTGAGGGTCACCGAGGGCGCCCTATTGGCCATGCAGGAGTCCTGCGAGATGTACTTGACGCAGCGGCTCGCGGACTCCTACATGCTAACCAAGCATCGCAATCGCGTCACACTGGAGGTGCGCGACACGGCATTGATGGCCTACATCTGCGACCGGGGT------CGGCAAGCT---------

melanogasterATGCCACGACACAGCAGAGCCAAGCGC---------GCACCC------------------AGGCCGTCGGCG------------------AACAACTCAAAGTCGCCGAACGACGACGACACGGCCTTCCGCTCGCCGGAGCCAGAAGACGGCACCGACTACGGCCTCGAATTCACCACCAGCCAACTGACGCTTCAG???------AACAATCGGCGTTCCTCGACGTTGCGCAGGGACGCC---------------------GGACGGAGGCAGCCGGCAGCGAGAGACAGCTCCACCAGTGGC??????---???GAC------CAGGAGAATCGCTATCCCACAACCAGATCGCCGCAGACGCGTCGAATGACC????????????------------------------------------------------------------------------------------------------AGCAAAACGCGAGCA---------GCAGGGCCAGTTGCTGCGCAA------AACCAG------ACCAGGCGGCGCAAAGCGGCCAATCCCATGAGCAGAGCCAAGAGAATGGATCGTGAGATCCGGCGACTGCAGCACCATCCCGGCACACTGATACCCAAGCTGCCGTTCTCGCGTCTAGTGCGCGAGTTCATCGTGAAGTACAGCGACGACGAGCCGCTAAGGGTCACCGAAGGCGCCCTATTGGCCATGCAGGAGTCGTGCGAGATGTACTTGACGCAGCGGCTCGCCGACTCCTACATGCTAACCAAGCATCGCAATCGCGTCACACTGGAGGTGCGCGACATGGCATTGATGGCCTACATCTGCGACCGGGGT------CGGCAATTT---------

mimeticaATGCCGAGAAAAAGTGGCGCAAGCCGCAAGATGCCC???CCC------------------AAGCCAACG???GGGGACACGGACGCGGAG------------------AGCGACGACGACACGGCTTTCCGATCGCCGGAACCGGAAGATGGCACCGACTACGGCCTGGAGTTCACCACAAGCCGACTGACTCTACAGGATGCC---TCCAATCGCCGTTGCTCAACGATGCGCAAGGACACCCGAAACACCCGGGCATCGCGA---------------???GCGGATAGAACCGCCTCAAGC---GAAGAG---GAGGAT------CAGGAGAATCGCCTTCCTGCAGCCAGATCGCCGCAGACGCGACAGATGACCAGTCAGCAGGAGAGG????????????---------------------------?????????---------------------------GTCAGGGTCCAAGCATCT------------???------GCC---GGACAA---???GTCCAG------AATCAA------ACCAGGCGACGTAAGATGGCCAATCCCATGAGCCGAGCCCAGAGAATGGATCGCGAGATCCGACATCTGCAGAATCATCCCGGCATACTCATCCCTAAGCTGCCATTCTCGCGCCTGGTTCGCGAATTTATCATGAAGTACAGCGACGGAGCTCCGTTGAAGGTCACTGAAGGCGCCCTCAACGCCATGCAGGTGTCCAGCGAGTTGTATGTGACGCAACGTCTGGCCGACTTCTACATGCTAACCAAACACCGCAATCGCGTCACGCTGGAAGTGCGCGACATGGCTTTGATGGCTCTGATCTGTGACCGGAGTCATAAC------------------

orenaATGCCTCGACACAGTGATGCCAAGCGT---------AACCCTAAATCGAACCCCAAATCG??????AAAATG------------------AACAACTCACAGCCGCCAAGCGACGACGACACAGCATTCCGCTCGCCGGCTCCAGAAGGCGACACCGACTACGGCCTGGAGTTCACCACTAGCGAACTGACGCTACAGGAGGGC---AACAATCGTCGTTGCTCCACGATGCGCAAGGACGCC---------------------GGACATAGGCATCAGCCAGCGACCCGCACCTACTCC????????????---???AAC------CAGGAGAATCGCCATCCGGCAGCCACATCCAAGCAGACGCATCCGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGGCGGCGCAAAATGAACAATCCCATAAGCAGAGTCAAGAGGGTGAACCTCGAGATACGGCGATTGCAAAGCCATTCCCGCGCACTGATACCTAAGCTGCCCTTCTCGCGTCTGGTGCGCGAATTCATCATGAAGTACAGCGATGGGGAGCCGTTGAAGATCAGCGTGGCAGCCTTAGTGGCCATACAGGAGTCCTGCGAGCTGTACGTGACACAGCGGCTGTCGGACTCCTACATGCTAACCAGGCATCGCAATCGCGTCACACTTGAGGTGCGCGACATGGCTCTGATGGCCTACATCTGCGAGCGGGCT------CGGCTAGCC---------

paralutea???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????TACGGCTTGGAGTTCACCACAAGCCGGCTGACTCTGCAGGACGCC---TCCAATCGCCGTTGCTCGACGCTGCGCAAGGACACCAGAAATGGCCGGGCATTGGAA---------------???GCGGATAGAACCGCCTCCAGC---GAAGAG---GAGGAT------CAGGAGAATCGCCTGCCAGCAGCCAGATCGCCGCAGACGCGACGGATGACCAGCCAGCAGGAGAGGCGTCCGGCTCCC---------------------------AGCCAGCAGGAGAGGCGTCCGGCTCCCATCCAGCCGGTTAGGGTTCAAGCATCC------------???------ACC---GGACCAGCGGCTGGCCAG------GATCGG------AAACGGCGACGCAAGATGGCCAATCCCATAAGCAGAGCCAAGCGAATGGATCGCGAGATCCAACGTCTGCAGAAACATCCCGGCACGCTTATACCCAAGCTGCCATTCTCGCGTCTGGTTCGCGAATTTATAGTCAAGTACAGCGATGGACCACCGTTCAGGGTCACCGAAGGCGCCTTCAACGCCATGCATGTGTCCAGCGAGATGTACGTGACGCAGCGTCTGGCCGACTCCTATATGCTGACCAAACACCGCAATCGCGTCACGCTGGAGGTGCGCGACATGGCTCTGATGGCTTTGATCTGCGACCGGGGTCATAAC------------------

prostipennisATGCCGAGAAAAAGTGGCGCAAGCCGCAGGGTGAAC???CCC------------------AAGCCAACG???GGGGACACGGACGCGGAG------------------AGCGACGACGACACGGCCTTCCGATCGCCAGAACCGGAAGATGGCACCGACTACGGCTTGGAGTTCACCACAAGCCGGCTGACTCTGCAGGACGCC---TCCAATCGCCGTTGCTCGACTCTGCGCAAGGACACTAGAAATGGCCGGGCATTGGGA---------------???GCCGACAGAACCGCCTCCAGC---GAAGAG---GAGGAC------CAGGAGAATCGCCTGCCAGCAGCCAGATCGCTGCAGTCGAGTCGCATAACCAGTCAGCAGGAGATGCGTCCTGCTCCC---------------------------AGCCAGCAG---------------------------GTCAGGACTCAGGCATCT------------???------TCA---GGACAAGCTGCTCCTCAG------GATCGG------AACCGGCGACGCAAGATGGCCAATCCCATAAGCAGAGCCCAGCGAATGGATCGCGAGATCCAAAATCTGCAGAAACATCCCGGC???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????

rajasekari????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GACTACGGCTTGGAGTTCACCACAAGCCGGCTCACCCTG---------AATTCCAACCGCCGATGCTCGACGCTGCACAAGGAGACCTCAGGCGGCCCTGGGTCGCGA---------------???GCGGGAAGAACT---???AGC---GATGAG---GAGGAT------CAGGAGAATCGG---??????GCCAGCTCGCCGGGGACGCGCAGGATGAGCGGTCAGCAGGAAAGG????????????---------------------------?????????---------------------------TCCAGGACTCAGGCAGCG------------???------AAC---GGATCGATTGGTGCCCAG------AATCAG------ACCAGGAGACGCAAGATGGCCAAACCCTTGAGCAGAGCCAGAAGGATGGATCTAGAGATCCAGCATCTGCAGAATCATCCCGGC???????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????

sechelliaATGCCACGACACAGTAGAGTCAAGCGC---------GCACCC------------------AGGCCGTCGGCG------------------AACAACTCAAAGTCGCCGAACGACGATGACACAGCCTTCCGCTCGCCGGAGCCAGAAGACGGCACCGACTACGGCCTCGAGTTCACCACCAGCCAACTGACGCTTCAG???------AACAATCGGCGTTCCTCGACGATGCGCAGGGACGCC---------------------GGACGGAGGCAGTCGCCAACGAATGGTAGCTCCGCCAGTGGC??????---???GAC------CAGGAGAATCGCCATCCCAGAGCCAGACCGTCGCAGACGCGTCGATTGACC????????????------------------------------------------------------------------------------------------------AGCAAGACGCGGGCA---------GCAGGGCCAGTTGCTGCGCAG------AACCAG------ACCAGGCGGCGCAAAGCGGCCAATCCCATGAGCAGAGCCAAGAGGATGGATCGCGAGATCCGGCGACTGCAGCACCATCCCGGCACACTGATACCCAAGCTGCCGTTCTCGCGTCTGGTGCGGGAGTTTATCATGAAGTACAGCGACGGCGAGCCGCTGAGGGTCACCGAGGGCGCCCTAATGGCCATGCAAGAGTCCTGCGAAATGTACTTGACGCAGCGGCTCGCGGACTCCTACATGCTAACCAAGCATCGCAATCGCGTCACACTGGAGGTGCGCGACATGGCATTGATGGCCTACATCTGCGACCGGGGT------CGGCAAGCT---------

simulansATGCCACGACACAGTAGAGCCAAGCGC---------GCACCC------------------AGGCCGTCGGCG------------------AACAACTCAAAGTCGCCGAACGACGATGACACAGCCTTCCACTCGCCGGAGCCAGAAGACGGCACCGACTACGGCCTCGAGTTCACCACCAGCCAACTGACGCTTCAG???------AACAATCGGCGTTCCTCGACGATGCGCAGGGACGCC---------------------GGACGGAGGCAGTCGCCAACGAATGGTAGCTCCGACAGTGGC??????---???GAC------CAGGAGAATCGCCATCCCAGAGCCAGACCGTCGCAGACGCGTCGATTGACC????????????------------------------------------------------------------------------------------------------AGCAAGACGCGGGCA---------GCAGGGCCAGTTGCTGCGCAG------AACCAG------ACCAGGCGGCGCAAAGCGGCCAATCCCATGAGCAGAGCCAAGAGGATGGATCGCGAGATCCGGCGACTGCAGCACCATCCCGGCACACTGATACCCAAGCTGCCGTTCTCGCGTCTGGTGCGGGAGTTTATCATGAAGTACAGCGACGGCGAGCCGCTGAGGGTCACCGAGGGCGCCCTGTTGGCCATGCAAGAGTCCTGCGAAATGTACTTGACGCAGCGGCTCGCGGACTCCTACATGCTAACCAAGCATCGCAATCGCGTCACACTGGAGGTGCGCGACATGGCATTGATGGCCTACATCTGCGACCGGGGT------CGGCAAGCT---------

takahashiiATGCCGAGAAAAAGTGGCGCAAGCCGCAAGGTGGAC???CCC------------------AAGCCGACG???GGTGACACGGACGCGGAG------------------AGCGACGACGACTCGGCCTTCCGATCGCCGGAACCGGAGGACGGCACCGACTACGGCTTGGAGTTCACCACCAGCCGGCTGACTCTGCAGGACGCC---TCCAATCGCCGTTGCTCGACGCTGCGCAAGGACGCCAGAAGTGGCCGGGCATTGGAA---------------???GCGAATAGAACAGCCTCCAGC---GAGGAG---GAGGAT------CAGGAGAATCGACTGCCAGCAGCCAGATCGCCG------CGACGGATGACCAGTCAGCAGGAAAGGCGTCCAACTGCC---------------------------AGCCAGCAGGAGAGGCGTCCAACTGCCAAC---------------CAAGCATCT------------???------TTA---GGACCAGCTGCTCCTCAG------GATCGT------AGGCGGCCACGCAAGATGGCCAATCCCATGAGCAGAGCCCGGCGAATGGATCGCGAGATCCAACAACTGCAGAAACATCCCGGCACGCTTATACCCAAGCTGCCATTCTCGCGCTTGGTTCGCGAATGTATCATGAAGTACAGCGACGGAGCACCGCTGAAGATCACCGAGGGCGCCTTCAACGCCCTGCAGGTGTCCAGCGAGATGTACGTGACGCAGCGCCTGGCCGACTCCTACATGCTGACCAAGCACCGCAATCGCGTCACGCTGGAGGTGCGCGACATGGCTCTGATGGCTCTGATCTGCGACCGGGGTCACAAC------------------

teissieriATGCCTCGACACAGTAACGCCAAGCGC---------GGCCCC------------------AAATCGACGGTG------------------AACAACTCAAAACCGCCAAGCGACGACGACACAGCCTTCCGCTCGCCGGAGCCAGAAGACGGCACCGACTATGGCCTGGAGTTCACCACCAGCCAACTGACGCTACAGGAG------AACAGTCGTCGTTGCTCGACGATGCGCAAGGACGCC---------------------GGACGGCGGCATCCGGCGGCGAGTAGGATGTCCACCAGCGAC??????---??????CAGGAT???GAAAATCGCCATCCGGCAGCCAGATCACCGCAGACGCGTCGGATGACC????????????------------------------------------------------------------------------------------------------ACCAGCACGCGGGCG---------CCGAGACCAGTTGCTGCACAG------AAC???AACCAAAACAGGCGGCGCAAAATGCCCAATCCCATAAGCAGAACGAAAAGAATGGATCGCGAGATACGGCGACTGCAGAACCATCCCGGCACACTAATACCCAAGCTGCCGTTCTCGCGTCTGGTGCGCGAGTTCATCGTGAAGTACAGCGATGGAGAACCGCTGAGGGTCACCGAGGGCGCCTTTATGGCCATGCAGGAGTCCTGCGAGATGTACCTGACGCAGCGGCTCGCGGACTCCTACATGCTAACCAAGCATCGCAATCGCGTTACACTGGAGGTGCGCGACATGGCCCTGATGGCCTACATCTGCGACCGGGGT------CGGCTAGCA---------

trilutea??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GAAGAG---GAGGAT------CAGGAGAATCGCCTGCCACCAGCCAGATCGCCGCAGACGCGACGGATGACCAGTCAGCAGGAGAGGCGACCGGCTCCC---------------------------AGCCAGCAGGAGAGGCGTCCGGCTTCGAGCCAGCCGGTTAGCAACCAAGCATCC------------???------ACC---GGACCAGCTGCTGGCCAG------GATCGG------AAACGGCCACGCAAGATGGCCAATCCCAGAAGCAGAGCCCAGCGAATGGATCGCGAGATCCAACGTCTGCAGAAACATCCCGGCACGCTTATACCCAAGTTGCCATTCTCGCGTTTGGTTCGCGAATTTATCGTCAAGTACAGCGACGGAGAACCGTTTAGGGTCACCGAAGGCGCCTTCAACGCCATGCAGGTGTCCAGCGAGATGTACGTGACTCAGCGTCTGGCCGACTCCTACATGCTGACCAAACACCGCAATCGCGTCACGCTGGAGGTGCGCGACATGGCTCTGATGGCTTTGATCTGCGACCGGGGTCATAAC------------------

yakubaATGCCACGACACGGGAACGCCAAGCGC---------GGCCCC------------------AAATCGACGGTG------------------AACAATTCAAGGCCGCAAACCGACGACGACACATGCTTCCGCTCGCCGGAACCAGAAGACGGCACCGACTACGGCCTGGAATTTACCACCAGCCAACTGACGCTACGGGAGGAC---AACAGTCGTCGTTCCTCGACGATGCGCAAGGACGCC---------------------GAACGGAGGCATCCGCCAGCGAATAGGACCTCCACCAGCGAC??????---??????GAGGAT???GAAAATCGCGGTCCGGCAGCCGCGTCGTCGCAGTCGCGTCGGATGACC????????????------------------------------------------------------------------------------------------------ACCAGCACGCGGTCG---------CCGAGACCAGTTGCCGCACAG------AAC???AACCAAACCAGGCAACGCAAAATGCCCAATCCCATAAGCAGGACCAATAGGTTGAATCGCGAGATACTGCGGCTGCAGAACCATCCCGGCACACTTATACCCAAGCTGACGTTTGCGCGTCTGGTGCGCGAGTTCATCGTGAAGTACAGCGATGAAGCACCGTTGAGGGTCACCGAGGGCGCGTTAATTGCCATGCAGGAGTCCTGCGAGATGTTCTTGACGCAGCGGCTCGAGGACTCCTACATGCTAACCAAGCATCGCAATCGCGTCACACTGGAGGTGCGTGACATGGCCCTGATGGCCTACATCTGCGACCGA???------???------TCGTCAAAT

;end;

BEGIN TREES;TREE tree = (erecta,orena,((teissieri,yakuba),(((mimetica,(prostipennis,(takahashii,(lutescens,(paralutea,trilutea))))),(lucipennis,rajasekari)),(melanogaster,(mauritiana,(sechellia,simulans))))));

END;

Drosophila



Arachis_appressipilaAstragalus_sinicusCajanus_cajanCajanus_cajanifoliusCajanus_scarabaeoidesCicer_bijugumCicer_judaicumCicer_pinnatifidumCicer_reticulatumCicer_yamashitaeGlycine_maxLens_culinarisLotus_japonicusMedicago_truncatulaPhaseolus_vulgarisPisum_sativumBVigna_unguiculata



Arachis_appressipilaATGGCAAGAGTGAAGCATATTCCAACACCTAGTCAAAAAGGT---AAGAAAAAA???------------------------------------------------------------AGA???------???------???TCTCCATCGCCA????????????GGTAGCAGA---???---?????????????????????---??????---------------------CCA??????GGACGACGA??????GCA???---------------AAGAAAAGGCGTAATAAGCCAGGAACAGTAGCTCTTCGTGAGATTCGTAAATTTCAGAAGAGTTTCAACCTACTCATCCCAGCTGCCCCCTTCATGAGATGTGTCAAACAGATTACAAACCAACTATCTACGGAGGTCAATCGCTGGACAGCTGAAGCCATGGTAGCACTTCAAGAAGCAGCTGAGGATCATCTGGTTCGTTTGTTTGAAGATGGAATGTTGTGTGCTATCCATGCAAAGCGTGTTACTCTAATGAAAAAGGACATAGAGTTGGCCCGGAGACTCGGAGTGATAGGAAGACCTTGG

Astragalus_sinicusATGGCGAGAGTTAAAATCAAACCATCTCCTCGTAAA------------------------CGC------------------------???---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGAGAGTCAGGGGAAGAAAAAAAGGCGCTATAAACCTGGAACAGTAGCACTTCGTGAGATTCGTCATTTCCAAAAGTCTGTCAATTTACTCATACCGGCTGCTCCTTTTATAAGATGTGTCAAACAGATTACAAATAACTTTTCTACAGAAGTCTCGCGCTGGACACCTGACGCCGTGTTAGCACTTCAAGAGGCAGCTGAGGATTATCTGGTTAAATTGTTTGAAGACGGGATGCTCTGTGCAATTCATGCAAGGCGTGTTACCCTTTTGAAAAAGGATTTTGAGTTGGCGCGGAGACTTGGAGGAATAGGAAGGCCTTGG

Cajanus_cajanATGGCGAGAGTGAAGCACACGCCAGCTTCTCGCAAGCCTGGTAGG??????AAAGCG???------------------------------------------------------------CCAGAATCACCG------CAA------------GCTCAATCGCCCGCAACTAGAGAG???AGG???AGAGCTGAACAAGAGTTGCCGCAGGAGAAT---------------------GAAGCA---------GCGGCA------???ACTCACGGAAGAAAGAAAAGGCGCAGTAAGCCGGGAACTGCGGCGCTTCGCGAGATTCGTCATTATCAGAAGTCTTGCCAGCTTCTTATCCCAGTCGCACCCTTTATTAGATGCGTCAAAGAGATAACGCATCAATACTCTACGGAGGTGTCTCGTTGGACACCCGAAGCTGTGTTAGCACTTCAGGAGGCAGCTGAGGAATATCTGGTTCACTTGTTTGAAGACGGAATGCTCTGTGCAATTCATGCAAAGCGTGTTACTCTTATGAAAAAGGATATTGAGTTGGCTCGGAGGCTTGGAGGAATAGGAAGGCCTTGG

Cajanus_cajanifoliusATGGCGAGAGTGAAGCACACGCCAGCCTCTCGCAAGCCTGGTAGG??????AAAGCG???------------------------------------------------------------CCAGAATCACCG------CAA------------GCTCAATCGCCCGCAACTAGAGAG???AGG???AGAGCTGAACAAGAGTTGCCGCAGGAGAAT---------------------GAAGCA---------GCGGCA------???ACTCACGGAAGAAAGAAAAGGCGCAGTAAGCCGGGAACTGCGGCGCTTCGCGAGATTCGTCATTATCAGAAGTCTTGCCAGCTTCTTATCCCAGTCGCACCCTTTATTAGATGCGTCAAAGAGATAACGCATCAATACTCTACGGAGGTGTCTCGTTGGACACCCGAAGCTGTGTTAGCACTTCAGGAGGCAGCTGAGGAATATCTGGTTCACTTGTTTGAAGACGGAATGCTCTGTGCAATTCATGCAAAGCGTGTTACTCTTATGAAAAAGGATATTGAGTTGGCTCGGAGGCTTGGAGGAATAGGAAGGCCTTGG

Cajanus_scarabaeoidesATGGCGAGAGTGAAGCACACGCCAGCTTCTCGCAAGCCTGGTAGG??????AAAGCG???------------------------------------------------------------CCAGAATCACCG------CAA------------GCTCAATCGCCCGCAACTAGAGAG???AGG???AGAGCTGAACAAGAGTTGCCGCAGGAGAAT---------------------GAAGCA---------GCGGCA------???ACTCACGGAAGAAAGAAAAGGCGCAGTAAGCCGGGAACTGCGGCGCTTCGCGAGATTCGTCATTATCAGAAGTCTTGCCAGCTTCTTATCCCAGTCGCACCCTTTATTAGATGCGTCAAAGAGATAACGCATCAATACTCTACGGAGGTGTCTCGTTGGACACCCGAAGCTGTGTTAGCACTTCAGGAGGCAGCTGAGGAATATCTGGTTCACTTGTTTGAAGACGGAATGCTCTGTGCAATTCATGCAAAGCGTGTTACTCTTATGAAAAAGGATATTGAGTTGGCTCGGAGGCTTGGAGGAATAGGAAGGCCT???

Cicer_bijugumATGGCTAGAGTTAAGCACATTCCTCCTCCTCGTAAT------------------------CGCGCT---------------------GTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGAGGATCAGGAACATAAGAAAAGACGCAATAAGCCTGGAACAGTGGCGCTTCGCGAGATTCGTCGTTTTCAGAAGACTTTCAATTTGCTTTTACCAGCTGCTCCATTTATTAGATGCGTCAAACAGATTACGAACCAAACATCTTCACATGTCTCACGTTGGTCGCCGGAAGCAGTAATAGCACTTCAGGAGGCGGCTGAGGATTATCTGGTACATATGTTTGAAAATGGAATGCTATGTGCACTTCATGCAAGGCGTATTACCCTTATGAAAAAAGATATTGAGTTGACCCGTAGGCTTACAGGAATAGGAAGGCCGTGG

Cicer_judaicumATGGCTAGAGTTAAGCACATTCCTCCTCCTCGTAAT------------------------CGCGCT---------------------GTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGAGGATCAGGAACATAAGAAAAGACGCAATAAGCCTGGAACAGTGGCGCTTCGTGAGATTCGTCGTTTTCAGAAGACTTTCAATTTGCTTTTACCAGCTGCTCCATTTATAAGATGCGTCAAACAGATTACGAACCAAACATCTTCACATGTCTCACGTTGGTCGCCGGAAGCAGTAATAGCACTTCAGGAGGCGGCTGAGGATTATCTGGTACATATGTTTGAAAATGGAATGCTATGTGCACTTCATGCAAAGCGTATTACCCTTATGAAAAAAGATATTGAGTTGACCCGTAGGCTTACAGGAATAGGAAGGCCGTGG

Cicer_pinnatifidumATGGCTAGAGTTAAGCACATTCCTCCTCCTCGTAAT------------------------CGCGCT---------------------GTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGAGGATCAGGAACATAAGAAAAGACGCAATAAGCCTGGAACAGTGGCGCTTCGCGAGATTCGTCGTTTTCAAAAGACTTTCAATTTGCTTTTACCAGCTGCTCCATTTATAAGATGCGTCAAACAGATTACGAACCAAACATCTTCACATGTCTCACGTTGGTCGCCGGAAGCAGTAATAGCACTTCAGGAGGCGGCTGAGGATTATCTGGTACATATGTTTGAAAATGGAATGCTATGTGCACTTCATGCAAGGCGTATTACCCTTATGAAAAAGGATATTGAGTTGACCCGTAGGCTTACAGGAATAGGAAGGCCTTGG

Cicer_reticulatumATGGCTAGAGTTAAGCACATTCCTCCTCCTCGTAAT------------------------CGCGCT---------------------GTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGAGGATCAGAAACATAAGAAAAGACGCAATAAGCCTGGAACAGTAGCGCTTCGCGAGATTCGTCGTTTTCAAAAGACTTTCAATTTGGTTATACCAGCTGCTCCATTTATAAGATGCGTCAAACAGATTACGAACCAAACATCTTCACATGTCTCACGTTGGTCGCCGGAAGCAGTAATAGCACTTCAGGAGGCGGCTGAGGATTATCTGGTTCATATGTTTGAAAATGGAATGCTATGTGCCCTTCATGCAAGGCGTATTACCCTTATGAAAAAGGATATTGAGTTGACCCGTAGGCTTACAGGAATAGGAAGGCCTTGG

Cicer_yamashitaeATGGCTAGAGTTAAGCACATTCCTCCTCCTCGTAAC------------------------CGCGCT---------------------GTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGAGGATCAGGAGCATAAGAAAAGACGCAATAAGCCTGGAACGGTGGCGCTTCGCGAGATTCGTCGTTTTCAAAAGACTTTCAATTTGCTTATACCAGCTGCTCCATTTATAAGATGCGTCAAACAGATTACAAACCAAACATCTTCACATGTCTCACGTTGGTCGCCGGAAGCAGTAATAGCACTTCAGGAGGCGGCTGAGGATTATCTGGTTCATATGTTTGAAAATGGAATGCTCTGTGCACTTCATGCAAGGCGTATTACCCTTATGAAAAAGGATATAGAGTTGACCCGTAGGCTTACAGGAATAGGAAGGCCTTGG

Glycine_maxATGGCGAGAGTGAAGCACACGCCAGCTTCTCGCAAATCCGCT---AAAAAGCAAGCGCCACGC???------------------------------TCCACTTCCACGCAGCCG------???------CCA------???------------TCCCAATCGCCTGCAACTAGAGAGAGG---AGGAGAGCTCAACAAGTGGAGCCGCAG???------------------------???---------------------???GAGGCTCAGGGAAGGAAGAAGAGGCGCAATAGGTCGGGAACTGTGGCGCTTCGTGAGATTCGGCATTTTCAGAGGAGTTGTGAGCTTCTCATCCCGGCTGCTCCCTTTATCAGATGTGTCAAACAGATTACAAATCAATTCTCTACGGAGGTGTCTCGTTGGACACCTGAAGCTGTGGTAGCACTTCAGGAGGCAGCTGAGGAATATCTGGTTCACTTATTTGAAGATGGAATGCTCTGTGCAATTCATGCAAGGCGTATTACTCTTATGAAAAAGGACATTGAGTTGGCCCGGAGGCTTGGAGGAATAGGAAGGCCTTGG

Lens_culinarisATGGCGAGAGTTAAACAAACACCACGTCCC---------------------------------------------------------GTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCAGAATCAGGAAAGGAAGAAAAGACGGAATAAACCTGGAACCGTAGCGCTTCGTGAGATCCGGAAACTTCAAAAAACTTTCCAATTACTTATACCATATGCTCCCTTTGTAAGATGTGTCAGGGAAATTACAAACCAAGTATCTTCTTCGGTTACGCGCTGGACGCCGGAAGCATTGATTTCACTTCAAGAGGCAGCTGAGGATTGTCTAGTTCGAATGTTTGAAGCTGGATGTCTCTGTGCACTTCATGCAAAGCGTGTTACCCTTATGAAAAAGGATATTGAATTGACGCGAAGGCTTACCGGGGTAGCAAGACCTTGG

Lotus_japonicusATGGCGAGAATCAAGCACGTTCCTGCTGCTCGTAGAACCGCT---CGAAAGAAAGCACCA??????---------------------???GCACCATCCACATCT???------ACA---???------CAA------???------------ACCCAATCACCTGGTCGTCGAGAGAGG---AGTAGAGAACAACAACGGGAACCGCAG------------------------------------------------TCA???GGGACTCAGGGGAAGAAGAAGAGGCGCAATAGGCCGGGAACGGTGGCGCTTCGTGAGATCAGGCGTTATCAGAAGAGTGTAGACTTGCTTATCCCTGCTGCCCCCTTTCTGAGATTGGTTAGAGAGACTACACGTCAGTTATCTTTTGAGGTTTCTCGCTGGACAGCTGAAGCTGTGGTGGCTCTGCAGGAGGCAGCGGAGGACTATCTTGTTACTATGTTTGAAGATGGAATGCTCTGCGCAATTCATGCAAAGCGCGTTACCCTTATGAAAAAGGATATTGAGTTGGCCCGTCGGCTTCGAGGAATAGGAAGGCCTTGG

Medicago_truncatulaATGGCAAGAGTCAAGCACATTCCACGTCCTGGTAAA------------------------CGCACTCGTCGCAGTAGTAGTAGTAATGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAGTCTGAGGAAAAGAAGAAAAGAAGGAATAGACCAGGAACAGTTGCGCTTCGCGAGATTCGTAAATTTCAAAAGGCTGTTAACTTGCTTATACCTTGTGCTCCGTTTGTTAGATGCGTCAAACAGATTACAAACCAACTATCTATGGAGGTATCACGTTGGACGGCTGAAGCCTTATTAGCACTTCAGGAGGCAGCTGAGGAGCATCTGGTTCGTATGTTTGAAGGTGGGATGCTCTGTGCACTTCATGCAAAGCGTGTTACCCTTATGAAAAAGGATCTTGAGTTGACCCGTAGGCTTACAGGAATAGGATGCGCTCGG

Phaseolus_vulgarisATGGCGAGAGTGAAGACCACGCCAGCTTCGCGCAAAACCGGT---AAAAAAAAAGCCGCACGC???------------------------------TCCACGTCCACG------------???---------CGGTCA???---------------CAATCGCCT---------GGGAGG---AGAAGGGCTCAACAAGAGGAGCCGCAG???---GCAGAAGAAGAAGAAGAA---??????---------??????GCG???GAGACTCAGGGAAGGAAGAAAAGGCGCAATAAGGCAGGAACAGTGGCGCTTCGCGAGATTCGTCAATTTCAGAGGAGTTCCAAACTTCTTATCCCGGCTGCCCCTTTTATGAGATGTGTCAGACAAATTACACAGCAATTCTCTGCGGAGGTGAGTCGCTGGACACCTGAAGCAGTGGTAGCACTCCAGGAGGCAGCTGAGGAATGTCTAGTTCACTTGTTTGAAGATGGAATGCTTTGTGCAATTCACGCAAGGCGTGTTACTCTTATGACAAAGGATATTCAGTTGGCTCGGAGACTTGGAGGAATAGGAAGGCCTTGG

Pisum_sativumBATGGCGAGAGTTAAACAAACACCACGTCAC---------------------------------------------------------GCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTGAGAATCAGGAAAGGAAGAAAAGACGTAATAAACCTGGAACCGTAGCGCTTCGTGAGATCAAGAAATTGCAAAAAACTTTCCAATTACTTATACCATATGCTCCGTTTGTAAGATGCGTCAGGGAAATTACAAATCAAGTATCTTCATTGGTTACACGCTGGACGCCTGAAGCGTTGCTATCACTTCAAGAGGCAGCTGAGGATTGTCTAGTTCGAATGTTTGAAGCTGGATGGCTCTGTACACTTCATGCAAAGCGTGTTACCCTTATGAAAAAGGATATTGAGTTAACGCGCAGGCTTACCGGGATAGGAAGACCTTGG

Vigna_unguiculataATGGCGAGAGTGAAGCACACGCCAGCTTCGCTCAAAGTTGGT---AAAAAAAAAGTCAGTCGC???------------------------------TCCACATCCACG------------???---------------???---------------CAATCGCCTGCGACAAGAAGTCGT---AGAAGGGCTCAAGAAGAGGAGCCGCAGGAA------------------------??????---------??????GCG???CAGACTCAGGGAAGGAAGAAAAAGCGCAGTAAGCCAGGAACAGCGGCGCTTCGCGAGATTCGTCATTTTCAGAAGAGTTGCAAGCTTCTTATCCCGGCTGCCCCCTTTATCAGATGTGTCAAACAAATTACACATCAATTCTCTACGGAGGTGTCTCGCTGGACGCCTGAAGCTGTGGTAGCACTGCAGGAGGCAGCTGAAGAATGTCTAGTTCACTTGTTTGAAGATGGAATGCTTTGTGCAATTCACGCTAGGCGTATTACTCTTATGACAAAGGATATTCAGTTGGCTCGGAGGCTTGGAGGAATAGGAAGGCCTTGG

;end;

BEGIN TREES;TREE tree = (Arachis_appressipila,(Glycine_max,((Phaseolus_vulgaris,Vigna_unguiculata),(Cajanus_cajanifolius,(Cajanus_cajan,Cajanus_scarabaeoides)))),(Lotus_japonicus,(Astragalus_sinicus,((Medicago_truncatula,(Lens_culinaris,Pisum_sativumB)),(Cicer_yamashitae,(Cicer_reticulatum,(Cicer_pinnatifidum,(Cicer_bijugum,Cicer_judaicum))))))));

END

Fabaceae



Azolla_filiculoidesCeratopteris_richardiiEquisetum_arvenseEquisetum_diffusumLygodium_japonicumOphioglossum_petiolatumPsilotum_nudumPteridium_aquilinum



Azolla_filiculoidesATGGCGAGACTCAAGCAAAGACCACACAGGTCTAATCTGGCTGCATTGTCGTCCAATGTT---------GAAACTACA------GGAAGTAGCCAGCCCCATTTGAATCGCAGTAATAGT---------------------GCGCCACCAACTGCTCCC---------------------------------------------------------------------------------------ACAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------???TTCAAC------------------AATATTCCTGCTAATCGCCAACGCAAACCTCATCGATTTAGGCCTGGTACAGTGGCTTTAAGAGAAATCAGGCGCTACCAAAAGACTGTTCACTTTCTTATCCATCCCTTACCATTTGCACGACTGGTCAGGGAACTAACTGCCCAATTTTCAGACACAGTGAGCCGATGGACAGCTGAGGCATTGGTTGCTTTGCAAGAGGCTGCTGAGGATCATTTGGTGCATTTGTTTGAGGACACTAATTTATGTGCTATCCATGCAAAACCTGTCACAATAATGCCTAAAGATATGCAGCTTGCAAGACGTTTGCGTGGCAACACCATTGACAGGCCTTGG

Ceratopteris_richardiiATGGCGAAGAAAAAGAAGACCCCGAAAAAGGCTTCCCAGGTCGCTTCTTCCTCTACCGTCCCTCAGCCTGAGATCACAGATGCA???AACAGCAGAAGACGACTCCATCGAAGCAGTAGT---------------------GCACCTCCAACTGCTCCA---------------------------------------------------------------------------------------GTTACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------???ACAAATGAACGAGAGCCTACAGACAATACACCTTCCAGGCGTCCACGCAAACCCCACAGATTTCGTCCAGGAACAGTAGCTCTTCGGGAAATTCGACATTATCAGAGAACTGTTAATTTTCTCATACATCCATTGCCATTTGCCAGATTGGTGAGAGAAATTGGGGTCCAATTTTCAGATACTGTCTCTCGGTGGACTGCAGAATCACTTCTAGCATTACAGGAGGCTGCTGAGGATCACATTGTACACCTATTTGAGGATACAAACCTATGTGCCATACATGCTAAGCGTGTCACCATAATGCCAAAGGATATGCAATTAGCAAGGAGACTTAGAGCAAGTACCCTTGACAGGCCTTGG

Equisetum_arvenseATGGCGAAGAAGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGCTCCCGCGCGCTCCCAAAAGTCCCCTGCTTCCACAGTCGTCGACGGAAATGGGCAGCCTTCCAGTAAGAATGCAAAGGATCAAGGTGGGCCTTCAAGCACTCCCGATACTGCAAATGTTGGTGGCAGAGGAGTTAAAGGGGCAAAGGGAAAAGGAAGAACACAGCAGGGTGCCGAAAACCCT---------------------------------------------CGGAAGTCACACCGTTACAAAGCCGGAACGGTTGCACTGCGGGAAATCAGATTCTACCAGAAGAATGTAGATCTACTCATTCGGCCTCTCCCCTTTGCACGCTTGGTGCGAGAAATTGCTGATCACCTCTCTCGGACTGTTACTCGCTGGACAGCTGAAGCCTTGGTGGTTATGCAAGAGGCATGCGAGGATTTTATTGTCCATCTTTTTGAGGACACCAATCTTTGTGCAATTCATGCCAAACGCGTAACTATAATGACTAAGGACATGCAACTTGCTAGGCGGCTCCGTAATACAATGATTGATAGGCCGTGG

Equisetum_diffusumATGGCGAAGAAGAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGCGCCCGCGCGCTCCCAAAAGTCCCCTGCTTCCACAGTCGTCGACGGAAATGGGCAGCCTTCCAGTAAGAATGCAAAGGATCAAGGTGGGCCTTCAAGCACTCCCGATACTGCAAATGTTGGTGGCAGAGGAGTTAAAGGGGCAAAGGGAAAAGGAAGAACACAGCAGGGTGCCCAAAACCCT---------------------------------------------CGGAAGTCACACCGTTACAAAGCCGGAACGGTTGCACTGCGGGAAATCAGATTCTACCAGAAGAATGTAGATCTACTCATTCGGCCTCTCCCCTTTGCACGCTTGGTGCGAGAAATTGCTGATCACCTCTCTCGGACTGTTACTCGCTGGACAGCTGAAGCCTTGGTGGTTATGCAAGAGGCATGCGAGGATTTTATTGTCCATCTTTTTGAGGACACCAATCTTTGTGCAATTCATGCCAAGCGCGTAACTATAATGACTAAGGACATGCAACTTGCTAGGCGGCTCCGTAATACAATGATTGATAGGCCGTGG

Lygodium_japonicumATGGCCAGAAGGAAGCCTAATCCAAAGAAGGCCACGCCAGTTGCTTCTTCTTCGAACGCCACACCGCAGGAGGCGACA------GCAAGCAGCAGACCGCGCTTAGTTAGAAGCAGTAGT---------------------GCACCACCGACAACCCCA---------------------------------------------------------------------------------------GCAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------???TCAAAT------------------????????????---CGACAGCGCAAGCCTCATCGGTTTAGACCCGGAACTGTTGCTTTGCGGGAAATCAGGCATTTTCAGAAGACAGTTCACTTTCTTATTCATCCATTACCATTTGCACGGCTGGTTAGAGAAATTGCAGCTCAATGTTCGGATACAGTAACTCGATGGACTGCCGAAGCATTGGTTGCTTTGCAGGAGGCTGCAGAAGACCACCTTGTACACTTGTTTGAGGACACTAATCTGTGTGCTATTCATGCAAAACGAGTCACAATAATGACAAAAGACATGCAACTTGCACGGCGTTTACGAGGCAGCACTCTAGATAGGCCGTGG

Ophioglossum_petiolatumATGGCTCGAAGGAAGCCGAGGCCGCAAAAAGCA------------------------------------------------------------------------------------------------------------??????????????????ACTTCAACAGCCGTCGCACCATCGCCACAGCCAGTAGGCGGTCGTAAAGGAAGTCGTAAAACAGCCGGCAGACGCCGTGCTACCGCG??????---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCC---------------------------------------------AAAAAGCCCCACCGTTTCAAGCCCGGTACCGTTGCTTTGAGAGAGATCAAATATTACCAGAAGAAATTTCACCTCCTCATTCGTCGTCTTCCCTTTGCAAGATTAGTTAAAGAAATTACGGCTCATTTTTCACGCAATGTTACTCGCTGGACAGCGGAGGCGCTGACTGCTTTGCAAGAGGCAGCTGAAGACCAAATTGTTCATCTTTTTGAGGACACCAATTTATGTGCCATCCACGCAAAGCGCGTTACAATAATGCCAAAGGATATGCAACTTGCAAGGCGTCTACGTGGGAACACAGCTGACAGGCCATTT

Psilotum_nudum????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AGTCAAACCGCGAGACGCACC??????????????????---------------------------------------------------------------------------------------??????---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCT---------------------------------------------AGAAAGCGTCATCGGTTTCGGCCTGGAACAGTGGCATTACGAGAAATTAGATTTTATCAGAAGCGCTTTCATCTTTTAATTCCACCACTGCCTTTTGCCCGACTGGTCAAGGAAATGACATTATATTTTTCTCGCGATGTGTCCCGCTGGACGGCCGAGGCATTAGTGGCGTTGCAGGAGGCTGCTGAGGATTTCATCGTTCATCTGTTTGAGGACACCAATTTATGTGCTATTCATGCAAGACGTGTCACAATAATGACCAAAGACATGCCGCTTGCCAGGCGCTTGCGTGGAGCCATTGCTGATAGGCCCTGG

Pteridium_aquilinum??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????AACCGCCAACGCAAGCCCCATCGGTTTCGCCCTGGAACTGTAGCTCTCCGAGAGATTCGACATTACCAAAAGACTGTCAATTTTCTCATTCATCCCCTGCCCTTTGCCAGATTGGTGAGAGAACTGGCCGGTCAGTTTTCAGACTCAGTATCCCGGTGGACTGCAGAGGCACTGGTTGCGCTACAGGAGGCTACTGAGGACCACCTTGTGCACCTTTTTGAGGACACTAATTTATGCGCAATTCATGCCAAACGTGTCACAATAATGACGAAAGACATGCAACTAGCAAGGCGTTTGCGAGGAACCACTCTGGACAGGCCTTGG

;end;

BEGIN TREES;TREE tree = (Azolla_filiculoides,(Lygodium_japonicum,(Ceratopteris_richardii,Pteridium_aquilinum)),(Ophioglossum_petiolatum,(Psilotum_nudum,(Equisetum_arvense,Equisetum_diffusum))));

END;

Ferns



Isoetes_sinensisLycopodiella_carolinianaSelaginella_kraussianaSelaginella_moellendorffiiSelaginella_stauntoniana



Isoetes_sinensisATG---------------------?????????AAAAGTACCCCAAAAACGGGCAAAGCCTCTACTCCTGCAGCTTCTTCTTCAGCTACAGGAACCAGTTCTAGAAGAGTA---------------------------------GATGGTGCGAGCACTAGTAGGGCAGGAAATGCACGTAGTTCGGATAGGGTTGTAGCT---------------------------------------------------------------------------??????CAAAAAAGG------???---???---------CGGTTTAAACCTGGAACTGTGGCGCTTAGGGAAATAAGGCATTTTCAAAAGAGCTACGGATTTCTTCTCAGGCCTTTGCCATTTGCCAGAGTGGTGAGAGAGATAACTGCCCAG------TATTCTAAAGAAGTGTCAAGATGGACTGCTGAAGCTTTAATAGCTATTCAAGAGGCTGCTGAAGACTACCTTGTACATCTTTTTGAAGACACAAATTTGTGTGCTATTCATGCCAAAAGAGTCACTATCATGCCAAAAGATTTGCAACTTGCACGTCGTTTACGAGGGGGTACGGAAAGAAAGATG???---

Lycopodiella_caroliniana?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GCTACCCCAGTTTCTGAGTCGGCAAGCAGTAGAAGAGCTGTTGGAGAACGTCAAAGACAAGCG??????---------CAGCGA???CCT???---------CGGTTCAAGCCTGGTACTGTGGCTCTCAGAGAGATTCGAAAGTATCAAAAAAGTTTCAATCTCTTGATAAGGCCCTTGCCATTTGCACGACTGGTTCGTGAAATCACATCTCAA------TTCTCTACTGATGTTACAAGATGGACAGCAGAAGCTCTGATTGCCATTCAAGAGGCTGCTGAGGATTACCTTGTTCATCTTTTTGAAGATACCAACTTATGTGCCATTCATGCCCGTCGGGTGACAATTATGCCAAAGGATCTGCATCTTGCGCGACGTCTTCGAGGAGCTTCTGAG---AAAATGTTCATC

Selaginella_kraussiana??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GGTGGCGATGGCGCCGGGACGAGCAGAGCAGGT------------------------------GCCCAGCAGAAC------------------------------------------------------------------------------------AGACCA------???CGGCGTTTCAAGGCCGGGACTGTAGCGCTTCGCGAAATTCGGAAGTTTCAGAAGAGCTTTGAGCTCCTCCTCAGGCCTCTACCCTTCGCCAGAGTGGTTCGGGAGCTTGCATCCTTG------TGTTCAACTGAGGTTACTAGATGGACTGCTGAATCCCTCCTTGCTCTCCAAGAGGCTGCGGAGGATTACTTGGTGCATTTGTTTGAAGACACCAACTTGTGTGCGATACATGGAAAACGGGTTACGATA---------------------------------------------------------------

Selaginella_moellendorffiiATG---------------------------------------------------------------------------------------------------------------------------GAGTGCGCAGCGGGCGGCGATGGCGCTGGGACGAGCAGAGCCGGC------------------------------GCCCAGCAGAAC------------------------------------------------------------------------------------AAGCCACACGGCAAGCGCAGGTTTAAGCCCGGGACTGTGGCGTTGCGGGAGATCCGACGCTTTCAAAAGAGTTATGAGCTACTTCTCAGGCCATTGCCATTCGCAAGAGTGGTGAGAGAGATCACG------AACGTTTTCTCGTCGGAGGTATCCAGATGGACTGCCGAAGGATTGATAGCTCTCCAAGAGGCTGCCGAGGACTACCTTGTTCATCTCTTCGAAGACACCAACTTATGTGCCATTCACGGCAAGAGAGTCACCATAATGCCCAAGGACTTACATTTGGCCCGTCGACTAAGAGGAGCCTCCGAACGG------TTCGTT

Selaginella_stauntonianaATGGCCAAGAGGAGGAAATCGACG?????????------------------------------------------------------------------------------CGAGGGCGACCACCA---------GCGGGCGGCGATGGCGCTGGGACGAGCAGAGCCGGC------------------------------GCCCAGCAGAAC------------------------------------------------------------------------------------AAGCCGCACAGCAAGCGCAGGTTTAAGCCCGGGACTGTGGCGTTGCGGGAGATCCGACGCTTTCAAAAGAGCTATGAGCTCCTTCTCAGGCCATTGCCATTCGCAAGAGTGGTGAGAGAGATCACG------AACGTTTTCTCGTCGGAGGTATCCAGATGGACTGCCGAAGGATTGATAGCTCTCCAAGAGGCTGCCGAGGACTACCTTGTTCATCTCTTCGAAGACACCAACTTATGTGCCATTCACGGCAAGAGAGTCACCATAATGCCCAAGGACTTGCATTTGGCCCGTCGACTAAGAGGAGCCTCCGAGCGG------TTCGTT

;end;

BEGIN TREES;TREE tree = (Isoetes_sinensis,Lycopodiella_caroliniana,(Selaginella_kraussiana,(Selaginella_moellendorffii,Selaginella_stauntoniana)));

END

Lycopodiophyta



Penicillium_bilaiaePenicillium_brevicompactumPenicillium_canescensPenicillium_expansumPenicillium_fellutanumPenicillium_glabrumPenicillium_chrysogenumPenicillium_janthinellumPenicillium_lanosocoeruleumPenicillium_marneffeiPenicillium_raistrickii



Penicillium_bilaiaeATGCCCCCC---???GCCCGC------------AAA---------------------------------ACA------------GGC------------CCA------------GCAAGC---------CCA------------GCTCAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCG---------------CGCAAA---ACC---------------------------------------------------------??????????????????---------------------------------AAAGCAGCCTCAAAG------?????????AATGTCCAACCCGGTGATCCCACACCCCAAGGTCGCCGCCGGCGCTACAAGCCCGGCACCGTCGCCTTGAAAGAAATCCGCCGTTACCAACGCTCCTACGACCTATTAATCGCCAAACTGCCCTTTGCGCGCTTAGTCCGCGAAGTCGCACTGGATCTCCTCCCCGCAGAAGTTGGCGCCGAGCTACGATGGCAATCACAAGCTATCCAGGCGCTGCAAGAAGCCGCGGAGGCCTTCATGGTGCATTTATTCGAAGATACAAATCTGTGCGCGATACATGCGAAGCGCGTGACGATTATGCAGAAGGATATTCAGCTTGCGCGTCGGATTCGAGGAGCGTGGGGTGGTCTAGGC

Penicillium_brevicompactumATGCCACCGAAGATGGCG---------------------AAGATCTTGAAGAAGAAAACCACCGAT---------------------------------------------------AGC------------------------CCACAAAAG------------------------------ACC---AAAGGTCGCAGA????????????------------------------------------------------------------------------------------------------------GATGGCGATGGCTCACCA---------AATGCCGTG------CGCAAA---TCC------------------AAG---CCC---------------???AAACAA---AAAGCCAACAAG???------------------------------------------------------------------GCAGATGTCCAACCGGGTGATCCAACCCCCACAGGCCGCCGCCGCCGCTACAAGCCTGGCACCGTGGCACTCAAAGAGATCCGCAAATACCAACGCTCCTACGACCTCCTCATAGCTAAGCTGCCGTTCGCGCGACTCGTTCGCGAAGTCGCTCTCGATCTTCTGCCCGCCGACACGGGCGCCGAACTGCGTTGGCAGTCACATGCGATCCTGGCACTGCAAGAAGCCGCCGAGGCATTCCTGGTTCATTTGTTCGAGGACACAAATCTGTGTGCGATCCACGCCAAGCGCGTCACAATTATGCAAAAGGATATCCAGCTTGCGCGGAGAATTCGCGGGGTCTGGGCTGGTCTGGGT

Penicillium_canescensATGCCACCCAAAATGGCACGA------------AAG---------------------------------TCA------------GCA------------CCA------------GGCAGC------------------------GCACAA???---------------------------------------???CGCAAAACAGTCGCGACA------------------------------------------------------------------------GCTGCCGCA---------------------??????------TCACCAATACAAGCG---------------CGCAAAATC???------------------AAA---------------------???AAGCAA???------GCAAAGACAGCA---------------------------------------------------------------GCCGATGTCCAACCGGGCGACCCAACCCCTACAGGGCGCCGCCGCCGCTACAAACCAGGCACAAAAGCCCTAAAAGAAATCCGCCAATACCAACGCGGCTACGAGCTGCTCATCGCGAAACTACCCTTTGCCCGCTTAGTCCGTGAAGTGGCGCTCGATCTTCTCCCCGCCGACGTCGGTGCCGAATTGCGCTGGCAGTCGCATGCTATTCAAGCACTGCAGGAGGCTGCCGAGGCTTTCCTTGTTCATCTATTTGAGGATACGAATCTTTGCGCATTGCATGCTAAGCGGGTTACTATTATGCAGAAAGATATTCAGCTTGCGAGGAGAATTCGGGGTGTGTGGGGTGGTTTAGGG

Penicillium_expansumATGCCACCCAAGACAGCTCGC------------AAG---------------------------------ACA------------GGG------------CCG------------GGCAGC------------------------GCGCAAAAA------------------------------GGC---AAAGTGCGCAAGACAACCGCCGCG------------------------------------------------------------------------CCCGCCGCC---------------------???GGAGATGGAACACCAACAAAAGCA---------------CGCAAG---ACG------------------AAGGGA------------------GGAAAGCAATCAAAAGTC---------AAC---------------------------------------------------------------GCCAACGTCCAACCCGGAGACCCAACCCCCACAGGCCGGCGCCGGCGCTACAAGCCCGGCACCGTCGCATTGAAAGAAATCCGCCGCTACCAACGCTCCTACGACCTCCTAATCGCCAAACTCCCCTTTGCACGCTTAGTCCGCGAAGTCGCACTCGATCTCCTCCCCGCCGACGTCGGCGCAGAGTTGCGCTGGCAGTCGCATGCTATCCAAGCTCTGCAGGAGGCCGCCGAGGCTTTCCTTGTTCATCTTTTCGAGGATACAAATCTCTGCGCGCTGCACGCGAAGCGCGTTACTATTATGCAGAAGGATATCCAGCTTGCGCGGAGAATTCGCGGTGTCTGGGCTGGGCTTGGT

Penicillium_fellutanumATGGCCACCAAGACAGCA???------------???------------------------------GCG???------------GCG------------CCG------------GCCAGC---------CCG------------GCGCAAAAT------------------------------AGCCCA------------------------GCGCAGAAGCGTAAGCGCGGACCGACTGTATCATCGCCTTCCAAACAGAAG------------------------------------------------------------------------------------------------???---???------------------???------GGA------------------------------???AAGACA???AAA---------------------------------AAGCCAGCG------------AGAGCA???AATGTCCAGCCCGGCGACCCAACGCCCTCTGGTAAACGCCGCCGCTACAAGCCCGGCACTGTTGCCCTCAAGGAAATCCGACGCTACCAACGCTCTTACGATCTCTTAATCGCGAAACTCCCCTTTGCCCGACTCGTCCGCGAGGTCGCACTCGACCTTCTCCCCGCTGAAGTCGGCTCCGAGCTGCGCTGGCAGTCGCACGCTATCCAGGCATTGCAAGAAGCCGCCGAGGCATTTCTCGTGCATCTCTTCGAAGATACCAACCTCTGTGCGCTACATGCCAAGCGCGTCACAATCATGCAGAAGGATATCCAGCTTGCGCGGCGGATAAGAGGCGTGTGGGGAGGTCTTGGA

Penicillium_glabrumATGCCCACCAAATCA???---------------------------------------------------------------------AAACGATTGATTCCT------------GGGAGC---------CCT------------GCA---???------------------------------??????---------------------------------------------------------------------------GGAAGACCTCGCAAGAGCGCA?????????GAAACAACCGAA------------------GGATCACCGAGCGCAGCG---------------CGCAAG---TCA------------------ACAGCT------------------GGCAAA------AAAGTGACAAAA??????---------------------------------------------------GCAAAGCGAACA???AATGTCCAACCCGGTGATCCCACACCCACAGGCCGTCGTCGCCGATACAAGCCCGGCACCGTCGCATTGAAGGAGATTCGCCGCTACCAACGCTCTTACGACCTCTTGATTGCTAAGCTTCCATTCGCCCGTCTCGTCCGTGAAGTCGCACTCGACCTCCTCCCCGCAGAGGTGGGCGGCACGTTGCGCTGGCAATCC???GCAATCCAGGCATTGCAGGAGGCTGCAGAAGCTTTCCTGGTGCATTTATTCGAGGATACCAACCTTTGTGCGCTGCATGCGAAGCGAGTTACCATTATGCAGAAGGATATTCAGCTTGCGCGCAGAATTCGGGGAGTTTGGGCAGGTCTCGGT

Penicillium_chrysogenumATGCCACCCAAGCTAGCCAGC------------AAG---------------------------------ACA------------GCA------------CCA------------GGCAGC------------------------GCACAAAAA------------------------------AAC---AAAGTGCGCAAGACAGTCGCTGCG------------------------------------------------------------------------CCGGCCGCC------------------------???GATGGAACACCAACCAAAGCA---------------CAGAAA---ACG------------------AAGGGA------------------GCAAAGCAATCAAAAGTCGCAAAGACCACC---------------------------------------------------------------GCCAACGTCCAACCCGGAGACCCAACCCCCACAGGCCGCCGACGCCGCTATAAGCCCGGCACCGTCGCTTTGAAAGAAATCCGCCGCTACCAACGCTCATACGACCTACTCATCGCTAAACTTCCCTTTGCGCGCTTAGTCCGCGAAGTCGCGCTCGATCTCCTCCCCGCCGACGTCGGCGCCGAGTTGCGCTGGCAGTCGCATGCCATCCAAGCTCTGCAGGAGGCCGCTGAAGCTTTCCTCGTCCACCTCTTCGAGGATACGAATCTATGCGCGCTACATGCGAAGCGCGTAACTATTATGCAGAAGGATATCCAGCTTGCGCGGAGAATTCGCGGTGTCTGGGCTGGGCTTGGT

Penicillium_janthinellumATGCCCCCA---???GCAAAA------------AAG---------------------------------ACC------------GCC------------GCC------------GCCGGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCG---------------CGCAAG---ACA------------------ATA???------AAGAAAGCCGTC??????------?????????---------------------------------------------------------------------------AATGTACAACCCGGCGACCCAGCCCCGACAGGCCGCAAACGCCGCTACAAGCCCGGCACCGTCGCCCTAAAAGAAATCCGCCGCTACCAACGCTCCTACGACCTTCTCATCGCCAAGCTGCCCTTCGCCCGACTGGTCCGCGAAGTCGCGCTGGACCTGCTCCCCGCCGAAGTTGGCGCCGAGCTCCGGTGGCAGTCGCATGCGATTCAGGCGCTTCAGGAAGCCGCTGAGGCGTTTATGGTGCATTTATTCGAGGACACGAATTTGTGTGCGATTCATGCGAAGCGGGTTACGATTATGCAGAAGGATATTCAGCTTGCGAGGAGGATTCGCGGGGTTTGGGGGGGATTGGGT

Penicillium_lanosocoeruleumATGCCACCCAAGTTAGCCAGC------------AAG---------------------------------GCA------------GTA------------CCA------------GGCGGC------------------------GCGCAAAAA------------------------------AGC---AAAGCGCGCAAGACAGTCGCTGCG------------------------------------------------------------------------CCGGCTGCC------------------------???GATGGAACACCAACCAAAGCA---------------CAGAAT---ATG------------------AGGGGA------------------GGAAAGCAATCAAAAGTCGGAAAAATCACC---------------------------------------------------------------GCGACCGTCCAACCCGGAGATCCAACCCCCACAGGCCGCCGACGCCGATATAAGCCCGGCACCGTCGCTTTGAAGGAAATCCGCCGCTACCAACGCTCATACGACTTACTCATCGCTAAACTTCCCTTTGCGCGCTTAGTCCGCGAAGTCGCGCTCGATCTCCTCCCCGCAGATGTCGGCGCCGAGTTGCGCTGGCAGTCGCATGCCATCCAAGCTCTGCAGGAGGCCGCTGAAGCTTTCCTCGTCCACCTCTTTGAGGATACGAACCTCTGCGCGCTACATGCGAAGCGCGTAACTATTATGCAGAAGGATATCCAGCTTGCGCGGAGAATTCGCGGTGTCTGGGCTGGGCTTGGT

Penicillium_marneffeiATGCCACCAAAAACAGGCCGAGGGCGCTCTTCC???GCC------------------------------???ACCACCAGCAGC???------------???AACTCTCCCAGA??????AGAGCTGGC???TCATCCCGTCAA?????????GAAACAACCACAACATCAAGTCCCATCACA???CCA---------------------------------------------------------------------------------------------------------------------------------------???TCACCAACTACCGCC---------------AGAAAT---ACGAAGCAGCCAATGTCCCCA??????------------------??????------??????GCAAAAACA??????AGAGTAACCAAGCGACCAGCCGGCAAAGCCCCG---------------------CGATCA???AACATACAACCGGGCGACCCAACCCCCATCGGCAAACGCCGCCGCTACAAGCCCGGCACCGTCGCCCTCAAAGAAATCCGCAAATACCAACGCTCCTTCGATTTGTTGATTAGCAAACTCCCCTTTGCCCGCTTAGTTCGCGAAGTCGCACTAGACCTGCTACCAGCCGAAGTAGGCGCCGAACTACGATGGCAATCGCACGCAATTATGGCGCTGCAAGAAGCTGCAGAGGCGTTTTTGGTGCATCTGTTTGAGGATACGAATCTGTGCGCCATTCATGCGAAGAGGGTTACGATTATGCAGAAGGATATTCAGCTTGCCAGGCGGATTAGGGGGATGTGGGCTGGTTTGGGC

Penicillium_raistrickii???------------GCCCGC------------AAA---------------------------------ACC------------GCA------------CCT------------GGAAGC------------------------GCTCAAAAA------------------------------GCC---AAAGCTCGCAAGACAGCCGCAACC------------------------------------------------------------------------CCCGCAGCC------------AACGACGGCGACGGCGACGGGTCCCCA------------------GTCATC???AAA---ACA------------------AAA---------------------???AAACAA---AAAGTCACCAAG???------------------------------------------------------------------TCCAACGTCCAGCCGGGCGATCCAACCCCCACAGGCCGCCGTCGCCGCTACAAACCCGGTACCGTGGCACTGAAAGAAATCCGCAAATATCAACGATCCTACGACCTGCTTATCGCCAAGCTCCCATTCGCGCGACTGGTGCGCGAAGTCGCACTCGACCTCCTCCCCGCCGATACAGGGTCTGAGCTGCGCTGGCAATCGCATGCAATTCTGGCGCTGCAGGAGGCGGCCGAGGCATTCCTGGTTCATTTGTTCGAGGATACGAATCTGTGCGCTATTCACGCTAAGCGGGTTACTATTATGCAAAAGGATATTCAGCTCGCGCGGAGAATACGCGGTGTTTGGGCTGGATTGGGC

;end;

BEGIN TREES;TREE tree = (Penicillium_bilaiae,Penicillium_janthinellum,((Penicillium_glabrum,((Penicillium_canescens,(Penicillium_brevicompactum,Penicillium_raistrickii)),(Penicillium_expansum,(Penicillium_chrysogenum,Penicillium_lanosocoeruleum)))),(Penicillium_fellutanum,Penicillium_marneffei)));

END;

Penicillium



Plasmodium_bergheiPlasmodium_falciparumPlasmodium_fragilePlasmodium_chabaudiPlasmodium_reichenowiPlasmodium_vinckeiPlasmodium_yoelii



Plasmodium_bergheiATGACAAGGACAAAAAAAAGTGTAACTACACATACCCCTATAAACACA------------------------CATACGCATATGTTTAATATGCTTGCAAATAATCCAATAATA---------------------------------------------------AATAAACAGGCACACAACCAACTTGGATCTAAAGTAACAAATATGAAC---------------------------AATAAAAATAATTCAGGAAAT------------------------------------------------------ATAACACAAAAAAGTATAAATAAA---ACTCGTATTCGAAGACCACATAGATATAGACCCGGTGTGTTAGCATTAAAAGAAATTCGAGCTTATCAATCAACAACTCAATTATTAATACCCAAAATACCATTTGTGAGGGTAGTTAAAGAAATAACAAAATTATATGAACTACCAAATAGCCAATTTCGTTATACTCCAGAAGCTTTACTAGCTCTTCAAACTGCATCAGAAGCATATTTAGTTAGTTTATTTGAAGATGCATATTTATGTTCACTTCATGCAAACAGAGTAACACTTATGCCAAAGGATATACATTTGGCTAGAAGAATAAGGGGGCGTGAT

Plasmodium_falciparumATGGTGAGAACAAAAAAGAATATACCAAATCATAACCCCTTAAAT???TTTAATAGGGACAAGTCATTTAAA---------------------------------------------------------------------------ACAAACAAAACATTACCA??????ACAGTACACCATGGAATTAGTTCCAAGACTACTAATATAAACAGACCCAGTGTAAATAGAGGAGGTATA---------------------------------------------------------------------AATGAA??????CAAAAAAACTTGCACAGG---??????ATAAGGAAACCCCATAGATACAGGCCAGGTGTATTAGCATTAAAAGAAATAAGAGCATATCAAGCATCGACTCAATTATTAATACCTAAAATTCCATTTGTTCGAGTAGTAAAAGAAATTACAAGATTATTTGAATTACCAGATGAGCAATTTCGTTATACACCTGAAGCATTATTAGCTTTACAAACAGCATCAGAAGCATATTTGGTTAGTTTATTTGAGGATGCTTATTTATGTTCATTACATGCAAACAGAGTAACACTTATGCCCAAAGATATTCATTTAGCTAGAAGAATACGCGGAAGAGAC

Plasmodium_fragileATGGTGCGAACGAAAAAGAGCGTGCCCATGCACAACCCCTTG???---------------------------------------------------------------------AACCCAGACGGGGTGGGCAGCAGCAACGAACCGACGAACAAGACAGTGCCT??????CCATCACACAAG??????------------------------------------------------------------------------GCCTCGTCCAAATCAAATAACAACGCAGGAACAGGCAAAGGGACTCGA????????????CAAAAGGGTTTGAAGAAGACA???CGAATTAGGAGGCCCCATAGGTACAGACCAGGTGTATTAGCATTAAAGGAAATAAGAGCATACCAAGCGACTACACAGTTACTCATTCCTAAAATACCTTTTGTTCGAGTCGTAAAGGAGATTACTCGGTTGTTTGAATTGCCCAATGAACAACTGCGTTACACCCCCGAGGCCCTGTTGGCACTGCAAACCGCATCGGAGGCCTACCTGGTCAGTCTCTTCGAAGATGCCTACTTGTGTTCACTTCACGCAAACCGCGTCACCCTCATGCCTAAGGACATACACTTGGCTCGCCGTATCCGCGGCCGCGAC

Plasmodium_chabaudiATGGCGAGGACAAAAAAGAGTGTAACTAACCATACCCCTATCAACACA------------------------CATACGCATATGTTTAATATGCTCGCAAATAATCCAATGGTA---------------------------------------------------AATAAACCAGCACATAACCAAATTGGATCCAAACCAACAAATGTAAAT---------------------------AATAAAAGTAATTCAGGAAAT------------------------------------------------------ATGACACAAAAAGGTTTAAATAAA---AATCGTATTCGAAGACCACATAGATATAGACCTGGTGTATTAGCATTAAAAGAAATTCGAGCTTATCAAGCAACAACTCAATTATTAATACCTAAAATACCATTTGTAAGAGTAGTTAAAGAAATAACAAAATTATATGAATTGCCAGATAGCCAATTTCGTTATACTCCAGAAGCTTTACTAGCTCTTCAAACTGCTTCGGAAGCATATTTAGTTAGCTTATTTGAAGATGCCTATTTATGTTCGCTACATGCAAACAGAGTGACCCTCATGCCTAAGGACATACATTTAGCTAGACGAATAAGAGGCCGAGAT

Plasmodium_reichenowiATGGTGAGAACAAAAAAGAATATACCAAATCATAACCCCTTAAAT???TTTAATAAGGACAAGTCATTTAAA---------------------------------------------------------------------------ACAAACAAAACATTACCA??????GCAGTACACCATGGAATTAGTTCCAAGACTACTAATATAAACAGACCAAGTGTAAATAGAGGAGGTATA---------------------------------------------------------------------AATCAA??????CAAAAAAACTTGCACAGG---??????ATAAGGAAACCCCATAGATACAGACCAGGTGTATTAGCATTAAAAGAAATAAGAGCATATCAAGCATCGACTCAATTATTAATACCTAAAATTCCATTTGTTCGAGTAGTAAAAGAAATTACAAGATTATTTGAATTACCAGATGAGCAATTTCGTTATACACCGGAAGCATTATTAGCTTTACAAACAGCATCAGAAGCTTATTTGGTTAGTTTATTTGAGGATGCTTATTTATGTTCATTACATGCAAACAGAGTAACACTTATGCCCAAAGATATTCATTTAGCTAGAAGAATACGCGGAAGAGAC

Plasmodium_vinckeiATGGCGAGGACAAAAAAGAGTGTAACTAACCATACCCCTATAAACACA------------------------CATACGCATATGTTTAATATGCTCGCAAATAATCCAATGGTA---------------------------------------------------AATAAATCAACACATAACCAAATTGGGTCTAAAGGAACAAATATAAAT---------------------------AATAAAAGTAATTCAGGGAAT------------------------------------------------------ATGACACAAAAAGGTTTAAATAAA---AGTCGTATTAGAAGACCACATAGATATAGACCTGGTGTATTAGCATTAAAAGAAATTCGAGCTTATCAAGCAACAACTCAATTATTAATACCTAAAATACCATTTGTAAGAGTAGTTAAAGAAATAACAAAATTATATGAATTACCAGATAGCCAATTTCGTTATACTCCTGAAGCTTTATTAGCTCTTCAAACGGCTTCGGAAGCATATTTAGTTAGCTTATTTGAAGATGCATATTTATGTTCACTACATGCAAACAGAGTGACTCTCATGCCTAAGGACATACATTTAGCTAGACGAATAAGAGGGAGAGAT

Plasmodium_yoeliiATGGTGAGAACAAAAAAAAGCGTAACTACACATACCCCTATAAATACA------------------------CATACGCATATGTTTAATATGCTTGCAAATAATCCAATGATA---------------------------------------------------AATAAATCAGCAAATAACCAAATTGGGTCAAAATCAATA------------------------------------???AAAAATAATTCAGGAAAT------------------------------------------------------ATAACACACAAAAATATAAATAAA---AATCGTATCCGAAGACCACATAGATATCGACCTGGTGTATTAGCATTAAAAGAAATTAGAGCTTATCAAGCAACAACTCAATTATTAATACCCAAAATACCATTTGTAAGAGTAATTAAAGAAATAACAAAATTATATGAATTGCCAAATAATCAATTTCGTTATACTCCCGAAGCTTTATTAGCTCTTCAAACTGCATCAGAAGCATATTTAGTTAGCTTATTCGAAGATGCATATTTATGTTCTCTTCATGCAAATAGAGTAACACTTATGCCAAAAGATATACATTTAGCTAGACGGATAAGAGGCCGTGAT

;end;

BEGIN TREES;TREE tree = (Plasmodium_berghei,Plasmodium_yoelii,((Plasmodium_chabaudi,Plasmodium_vinckei),(Plasmodium_fragile,(Plasmodium_falciparum,Plasmodium_reichenowi))));

END;

Plasmodium



Brachypodium_distachyonCenchrus_americanusHordeum_bulbosumHordeum_marinumHordeum_vulgareOaustraliensisObrachyanthaOsativaPanicum_virgatumSaccharum_hybridSorghum_bicolorZea_mays



Brachypodium_distachyonATGGCCCGCACGAAGCGCCCGGCCATCAGGAAGTCG---------AAGCCGCAGCCCAAGAAGCAACTCCAGTTCGAG???---------------------------------------ACAGGCGGC---GCGAGCACC???GCGTCG???ACCCCG??????CGT---??????CGGACCCCGGCGCGAGCGGCGGGTCAAGCG------GCACCCGCACAACAG---???CCG------AAGAAGCCA---------CACAGATTCCGGGCAGGCACGGTGGCGCTGCGGGAGATCAGGAAGTACCAGAAATCCCCTGAGCTGCTCATCCCATTCGCACCCTTCGTCCGTCTGATTAAGGAGATCAGTAATTTCTACTCACCTGAG---------------------------ATCTCGCGCTGG---------------ACTCCTCAAGCTCTCGTTGCTTTGCAAGAGGCTGCAGAATACCACTTGGTAAACATATTTGAAAAGGCAAATTACTGTGCCATCCATGCGAAGCGTGTTACCATGATGCAAAAGGACATACAGCTTGCGAGG??????????????????????????????

Cenchrus_americanusATGGCTCGAACCAAGCACCAGGCCGTGAGG??????GGCCGC---------???CCCAAGAAGAAGCTCCAGTTCGAGCGCTCCCCTCGCCAG??????---GCGCAG------------ACAGGCGGC---GCGAGCACCTCG------GGAACCTCGGGGAGG------GGT???CCGGCTCGGGGTGGAGCGGCTGCCGCTGGG------GCGGCAGGG???---------------ATT???AGGCCG---------CATCGGTGGCGACCAGGGACGGTGGCTCTGCGGGAGATCAGAAAATTCCAGAAATCTACCAATCCTCTTATCCCATTTGCTCCCTTTATTCGTCTGGTGAGGGAGATCACTAACGACTATTCGAAGGAA---------------------------GTGACACGCTGG---------------ACTCCTGAAGCCCTCCTTGCGCTGCAAGAGGCAGCAGAGTTCCACTTAATTGAGCTGTTTGAAGTGGCAAATTTGTTGGCCATCCATGGGAAGCGTGTTACTATCATGCAAAGGGACATACAGCTTGCAAGGCGTATCGGAGGA---???CGTTGGTCG---

Hordeum_bulbosumATGGCCCGCACCAAGCACCCCGCCGTGAGGAAGTCC---------AAGGCGCCGCCCAGGAAGAAGGTCGGGTCCGCGCGCGCCCCG???------???---GCGCAGCGCCGGCACGAGACAGATGGC---GCGGGCACGTCC------GAGACTCCGAGG---------------???GGGCCGGCCCCGGCGGCGGATCAAGGG------GCACCTGGGGAACCC---???AAG------AGGAAGCCA---------CACCGGTACAGGCCAGGCACGGTGGCACTGCGGGAGATCAGGAAGTACCAGAAGTCGGTCGATTTTCTCATCCCGTTTGCACCGTTTGTCCGTCTGGTCAAGGAGGTCACCGAATTCTACTGTCCTGCA---------------------------ATCAGCCGCTGG---------------ACTCCCCAAGCGCTCTTGGCAGTTCAAGAGGCTGCAGAGTATCACCTCGTCGACGTATTTGAAAGGGCACATCTCTGTGCCATCCATGCAAAGCGTGTTACCGTCATGCAAAAGGACATACAACTCGCA?????????????????????????????????

Hordeum_marinum??????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????GTGGCGCTGCGGGAGATCAGGAAGTACCAGAAGTCCACCGGGCTGCTCATCCCCTTCGCGCCCTTCGTCCGGCTGGTTAAGGAGATCACC???---------------GACTTAACGAAGGGAGAGCTGAAC---------???TGG---------------ACACCTCAGGCGCTCGTCTCGTTGCAAGAGGCTGCAGAGTATCACATAGTCGATCTATTCGAAAAGGCAAATCTATGTGCCATCCATGCTAAGCGTGTTACCATGATGCAAAAGGACATACAGCTGGCAAGGCGTATCGGGGGGACAAGGCTTTGG------

Hordeum_vulgareATGGCCCGCACCAAGCACCCCGCCGTGAGGAAGTCC---------AAGGCGCCGCCCAAGAAGAAGATCGGGTCCGCTAGCTCCCCG???------???---GCGCAGCGCCGGCAGGAGACAGATGGC---GCCGGCACGTCC------GAGACTCCGAGGCGG------GCC???CGGGGGCCGGCCCCAGCGGCGGCTGAAGGG------GCACCTGGGGAACCG---???AAG------AGGAAGCCA---------CACCGGTTCAGGCCAGGCACGGTGGCACTGCGGGAGATCAGGAAGTACCAGAAGTCGGTCAATTTTCTCATCCCGTTTGCACCGTTTGTTCGTCTGGTCAGGGAGATCACCGAATACTACTGTCCTCGA---------------------------GTCAAACGCTGG---------------ACTCCCCAGGCGCTCCTCGCAGTTCAAGAGGCTACAGAGTATCACCTCGTCGACATATTTGAAAGGGCACATCTCTGTGCCATCCATGCAAAGCGTGTTACCGTCATGCAAAAGGACATGCAACTCGCG?????????????????????????????????

OaustraliensisATGGCTCGCACGAAGCACCCGGCGGTGAGGTCG???------TCAAGGACGGAGCCCAAGAAGAAGCTCCGGTTCGACCGCTCCCCTCGG---CCTTCGAAGGTGCAGAGC---------ACTGGTGGT---GCGGGTACCTCG------GCGACCACGGGGAGC---------GCGGGGACCGCGGCT???------------GGG------ACGCCTGGGCAGCAGACAAGGCAG------AGGAAGCCA---------CACCGATTCCGTCCAGGCACAGTAGCACTACGGGAGATAAGGAAATTTCAGAAAACAACTGAACTTCTTATCCCTTTTGCGCCATTTTCCCGTCTGGTCAGGGAGATCACTGACTTCTATTCGAAGGAT---------------------------GTGTCACGCTGG---------------ACTCTTGAAGCTCTCCTTGCACTGCAAGAGGCAGCAGAATACCATTTGGTGGACTTGTTTGAAGTGTCAAACCTTTGCGCCATCCATGCTAAGCGTGTTACCATCATGCAGAAGGACATACAGCTTGCCAGGCGTATCGGTGGGCGGAGGCCATGG---GGC

ObrachyanthaATGGCTCGCACCAAGCACCCGGCGGTGAGGAAGTCG---------AAGCCGGAGCCCAAGAAGAAGCTCCAGTTCGAGCGCTCCCCGCGGAGG??????---GCGCAGCGC------------GGTGGC---GCGGATACCTCG------???---ACGAGGAGC---------GCGCGGACTGCGGCCGGAACGTCGGCCGAAGGG------ACGCCTGGACAGCAGTCGAGGCAG------AGGAAGCCA---------CACCGATTCCGTCCAGGCACAGTAGCTCTGCGGGAGATCAGGAGATTCCAGAAATCGACCGAACTGCTTATCCCATTTGCGCCATTTTCCCGTCTGGTGAGGGAGATCACTGATTTCTATTCCAAGGAT---------------------------GTGACGCGCTGG---------------ACTCTTGGAGCTCTCCTTGCACTGCAAGAGGCAGCAGAATACCACTTAGTGGATTTATTTGAAGTAGCAAATCTCTGCGCCATCCATGCTAAGCGTGTTACCATCATGCAAAAGGACATACAACTTGCCAGGCGTATCGGTGGACGGAGGCCATGG------

OsativaATGGCTCGCACGAAGCACCCGGCGGTGAGGAAGTCG---------AAGGCGGAGCCCAAGAAGAAGCTCCAGTTCGAACGCTCCCCTCGG---CCGTCGAAGGCGCAGCGC---------GCTGGT???GGCACGGGTACCTCG------GCGACCACGAGGAGC------------------???GCTGGAACATCGGCTTCAGGG------ACGCCTAGGCAGCAAACGAAGCAG------AGGAAGCCA---------CACCGCTTCCGTCCAGGCACAGTGGCACTGCGGGAGATCAGGAAATTTCAGAAAACCACCGAACTGCTGATCCCGTTTGCACCATTTTCTCGGCTGGTCAGGGAGATCACTGATTTCTATTCAAAGGAT---------------------------GTGTCACGGTGG---------------ACCCTTGAAGCTCTCCTTGCATTGCAAGAGGCAGCAGAATACCACTTAGTGGACATATTTGAAGTGTCAAATCTCTGCGCCATCCATGCTAAGCGTGTTACCATCATGCAAAAGGACATGCAACTTGCCAGGCGTATCGGTGGGCGGAGGCCATGG------

Panicum_virgatumATGGCTCGCACCAAGCACCCGGCCGTGAGGAAATCG---------AAGGAGCAGCCCAAGAAGAAGCTCCAGTTCGGGCGCTCCCCGCACGGG??????---ACGCCG------------ACAGGTGGA---GCGAGCACATCG------GCGACTCCGGCAAGC------GCT???GGGACCGGGGAGAGAGCGGCGGCTGGAGGT------ACGGCGGGGCCGCAG---???CAGAAGGTG???AAACCA---------CACCGTTGGAAGCCAGGGACTGTAGCGCTGCGGGAGATCAGGAAGTTCCAGAAATCCACCGAGATGCTTATCCCCTTTGCACCATTTGCCCGTCTGGTGAGGGAGATCACTGAGTTCTACTCAAGG???------------------------AATGTGACACGCTGG---------------ACCCCGGAAGCCATCCTTGCAATACAAGAGGCAGCAGAATTCCACCTGATAGAACTGTTCGAAGTGGCAAATCTTTGTGCCATCCACGCCAAACGTGTTACCATCATGCAAAGGGACATACAGCTTGCAAGGCGTATCGGTGGA---???CGCTGG------

Saccharum_hybridATGGCTCGAACCAAGCACCAGGCCGTGAGAAGGCCA---------ACGCAGAAGCCCAAGAAGAAGCTCCAGTTCGAGCGC???---------------------------------------GGTGGG---GCGAGTACCTCG------GCGACCCCGGAGAGA------AAT???GGGACCGGGGGAGGAGCGGCAGCTCGCGTT------ACACGGGGG???---------------GTG???AAGAAG---------CTTCGCTGGCGGGCAGGGACTGTAGCGCTGCGGGAGATCAGGAAGTACCAGAAGTCCACTGAGCCGCTCATCCCCTTTGCGCCCTTCGTACGCGTGGTTAAGGAGTTAACTGGATTC---------------------------------------????????????AGGATAGGACGCTATACCCCTGAAGCCCTCCTTGCGCTGCAAGAGGCAGCAGAATTCCACTTGATAGAACTGTTTGAAGTGGCGAATCTGTGTGCCATCCATGCCAAGCGTGTCACAGTCATGCAAAAGGACATACAACTTGCAAGGCGTATCGGAGGA---???CGTTGGGCG---

Sorghum_bicolorATGGCTCGAACCAAGCACCAGGCCGTGAGGAAGCTG---------CCGCAGAAGCCCAAGAAGAAGCTCCAGTTCGAGCGC???---------------------------------------GGTGGG---GCGAGTACGTCG------GCGACCCCGGAG???---AGGAAT???GGGACCGGGGGAGGAGCCGCGGCTCGCGTT------GCACGGGGG???---------------GTG???AAGAAG---------CATCGCTGGCGGGCAGGGACTGTAGCGCTGCGGGAGATCAGGAAGTACCAGAAGTCCACTGAGCCGCTCATCCCCTTTGCGCCCTTCGTACGTGTGGTCAAAGAGTTAACTGCATTC---------------------------------------????????????AGGATAGGGCGCTACACCCCTGAAGCCCTCCTTGCGCTGCAAGAGGCAGCAGAATTCCACTTGATAGAACTGTTTGAAGTGGCGAATCTGTGTGCCATCCATGCCAAGCGCGTAACAGTCATGCAAAAGGACATACAACTTGCAAGGCGTATCGGAGGA---???CGTTGGTCG---

Zea_maysATGGCTCGAACCAAGCACCAGGCCGTGAGGAAGACG---------GCGGAGAAGCCCAAGAAGAAGCTCCAGTTCGAGCGC???---------------------------------------GGTGGT---GCGAGTACCTCG------GCGACGCCGGAAAGG------GCT???GGGACCGGGGGAAGAGCGGCGTCTGGAGGTGACTCA---------------------------??????AAGACGAAACCACGCCACCGCTGGCGGCCAGGGACTGTAGCGCTGCGGGAGATCAGGAAGTACCAGAAGTCCACTGAACCGCTCATCCCCTTTGCGCCTTTCGTCCGTGTGGTGAGGGAGTTAACCAATTTC---------------------------------------????????????AAAGTAGAGCGCTATACCGCAGAAGCCCTCCTTGCGCTGCAAGAGGCAGCAGAATTCCACTTGATAGAACTGTTTGAAATGGCGAATCTGTGTGCCATCCATGCCAAGCGTGTCACAATCATGCAAAAGGACATACAACTTGCAAGGCGTATCGGAGGA---???CGTTGGGCA---

;end;

BEGIN TREES;TREE tree = (Brachypodium_distachyon,Hordeum_marinum,(((Panicum_virgatum,(Cenchrus_americanus,(Zea_mays,(Saccharum_hybrid,Sorghum_bicolor)))),(Obrachyantha,(Osativa,Oaustraliensis))),(Hordeum_bulbosum,Hordeum_vulgare)));

end;

Poaceae



AotusCallithrixColobusGorillaHumanChlorocebusLemurMacacaNomascusOtolemurPanPapioPongoSaimiri



AotusATGGGCCCGCGCCGCCGGAGCCGCAAGCCTGAGGCCCCGAGGAGGCGCCGCGCGAGTCCG------ACCCCCAGCCCCCCTCGGCGGGGCCCCTCCTTAGGCGCTTCCTCACGTCCACGTGGTTATCGAAGGCAAGGTTGGCTAAAGGAGATCCGAAAGCTTCAGAAGAGCACACACCTCTTGTTAAGGAAGTACCCCTTCAGCCGCCTGGCAAGAGAAATATGTGTTAAATTCACTCGTGGTGTGGACTTCAATTGGCAAGCCCAGGCCCTATTGGCCCTACAAGAGGCGGCAGAAGCATTTCTAGTTCATCTCTTTGAGGATGCCTATCTCCTCACCTTACATGCCGGCCGAGTTACTCTCTTCCCAAAGGACGTGCAACTGGCCCGGAGGATCCGGGGCATTGAGGAGGGACTCGGC

CallithrixATGGGCCCGCGCCGCCGGAGCCGCAAGCCCGAGGCCCCGAGGAGGCGCAGCGCGAGCCCG------ACCCCCAGCCCCTCCCGGCGGGGCCCCTCCTTAGGTGCTTCCTCACGTCCACGTGGTTATCGAAGGCAAGGTTGGCTAAAGGAGATCCGAAAGCTTCAGAAGAGCACACACCTCTTGTTAAGGAAGTACCCCTTCAGCCGCCTGGCAAGAGAAATAAGTGTTAAATTCACTCGTGGTGTGGACTTCAATTGGCAAGCCCAGGCCCTATTGGCCCTACAAGAGGCTGCAGAAGCATTTCTAGTTCATCTCTTTGAGGATGCCTATCTCCTCACCTTACATGCCGGCCGAGTTACTCTCTTCCCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCATTGAGGGAGGACTCGGC

ColobusATGGGCCCGCGCCGCCGGATTCGCAAGCCCGAGGCCCCGAGGAGGCGCAGCCCGAGCCCG------ACCCCCGGCCCCTCCCGGCGGCGCCCCGCCTTAGGCCCTTCCTCCCGTCAACATGGTCGGCGGAGACAAGCTTGGCTAAAGGAGATCCGAAAGCTTCAGAAGAGCACACACCTCTTGATAAGGAAGTACCCCTTCAGCCGCCTGGCAAGAGAAATATGTGTTCAATTCACTCGTGGTGTGGACTTCAATTGGCAAGCCCAGGCCCTATTGGCCCTACAAGAGGCAGCAGAAGCATTTCTAGTTCATCTCTTTGAAGATGCCTATCTCCTCACCTTACATGCCGGCCGAGTTACTCTCTTCCCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCATTGAGGCGGGACTCGGC

GorillaATGGGCCCGCGCCGCCGGAGCCGAAAGCCCGAGGCCCCGAGGAGGCGCAGCCCGAGC???ACCCCG???CCCGGCCCCTCCCGGCGGGGCCCCTCCTTAGGCGCTTCCTCCCATCAACACAGTCGGCGGAGACAAGGTTGGCTAAAGGAGATCCGAAAGCTTCAGAAGAGCACACACCTCTTGATAAGGAAGCTCCCCTTCAGCCGCCTGGCAAGAGAAATATCTGTTAAATTCACTCGTGGTGTGGACTTCAATTGGCAAGCCCAGGCCCTATTGGCCCTACAAGAGGCAGCAGAAGCATTTCTAGTTCATCTCTTTGAGGACGCCTATCTTCTCACCTTACATGCTGGCCGAGTTACTCTCTTCCCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCCTTGAGGAGGGACTCGGC

HumanATGGGCCCGCGCCGCCGGAGCCGAAAGCCCGAGGCCCCGAGGAGGCGCAGCCCGAGC???ACCCCG???CCCGGCCCCTCCCGGCGGGGCCCCTCCTTAGGCGCTTCCTCCCATCAACACAGTCGGCGGAGACAAGGTTGGCTAAAGGAGATCCGAAAGCTTCAGAAGAGCACACACCTCTTGATAAGGAAGCTGCCCTTCAGCCGCCTGGCAAGAGAAATATGTGTTAAATTCACTCGTGGTGTGGACTTCAATTGGCAAGCCCAGGCCCTATTGGCCCTACAAGAGGCAGCAGAAGCATTTCTAGTTCATCTCTTTGAGGACGCCTATCTCCTCACCTTACATGCAGGCCGAGTTACTCTCTTCCCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCCTTGAGGAGGGACTCGGC

ChlorocebusATGGGCCCGCGCCGCCGGAGCCGCAAGCCCGAGGCCCCGAGGAGGCGCAGCCCGAGCCCG------ACCCCCGGCCCCTCCCGGCGGGGCCCCTCCTTAGGCCCTTCCTCCCATCAACATGGTCGGCGGAGACAAGCTTGGCTAAAGGAGATCCGAAAGCTTCAGAAGAGCACACACCTCTTGATTAGGAAGTACCCCTTCAGCCGCTTGGCAAGAGAAATATGTGTTAAATTCACTCGTGGTGTGGACTTCAATTGGCAAGCCCAGGCCCTATTGGCCCTACAGGAGGCAGCAGAAGCATTTCTAGTTCATCTCTTTGAAGATGCCTATCTCCTCACCTTACATGCCGGCCGAGTTACTCTCTTCCCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCATTGAGGCGGGACTCGGC

LemurATGGGCCCGCGCCGCCGGAGGCGCAAGCCCGAGACCCCGACGAGGCGCGTCGAGAGCCCG------ACCCCCGGCCCCTCGCGGCGGCGGCCCCCCGTAGCCCCTACCCCCCGTCAACATCGTCGGAGGACATTTGGATGGTTACAGGAGATCCGAAAACTTCAGAAGAGCACACACCTCTTATTAAGGAAGGCCCCCTTCAGCCGCGTGGCAAGAGAAGTATGTACTAAATTCACTCGTGGTGTGGACTTCAATTGGCAAGCCCAGGCCCTGTTGGCCCTACAAGAGGCTGCAGAAGCATTTCTAGTCCATCTCTTTGAGGATGCTTATCTCCTCACCCTACATGCCGGCCGAGTTACTCTTTTCCCAAAGGACGTGCAGCTGGCCAGGAGGATCCGAGGCATTCAGGAAGGGCTCGGC

MacacaATGGGCCCGCGCCGCCGGAGCCGCAAGCCCGAGGCCCCGAGGAGGCGCAGCCCGAGCCCG------ACCCCCGGCCCCTCCCGGCGGGGCCCCTCCTTAGGCCCTTCCTCCCGTCAACATGGTCGGCGGAGACAAGCTTGGCTAAAGGAGATCCGAAAGCTTCAGAAGAGCACACACCTCTTGATAAGGAAGTACCCCTTCAGCCGCCTGGCAAGAGAAATATGTGTTAAATTCACTCGTGGTGTGGACTTCAATTGGCAAGCCCAGGCCCTATTGGCCCTACAAGAGGCAGCGGAAGCATTTCTAGTTCATCTCTTTGAAGATGCCTATCTCCTCGCCTTACATGCCGGCCGAGTTACTCTCTTCCCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCATTGAGGCGGGACTCGGC

NomascusATGGGCCCGCGCCGCCGGATCCGCAAGCCCGAGGCCCCGAGGAGGCGCAGCCCGAGTCCG------ACCCCCGGCCCCTCCCGGCGGGGCCCCTCCTTAGGCGCTTCCTCCCGTCAACACGGTTGGCGGAGACAAGGTTGGCTAAAGGAGATTCGAAAGCTTCAGAAGAGCACACACCTCTTGATAAGGAAGCTCCCCTTCAGCCGCCTGGCAAGAGAAATATGTGTTAAATTCACGCGTGGTGTGGACTTCAATTGGCAAGCCCAGGCCCTACTGGCCCTACAAGAGGCAGCAGAAGCATTTCTAGTTCATCTCTTTGAGGATGCCTATCTCCTCACCTTACATGCCGGCCGAGTTACTCTCTTCCCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCCTTGAGGAGGGACTCGGC

OtolemurATGGGCCCG???---CGGAGACGCAAGCCCGAAACCCCGACGAGGCGCCCCGCGAGCCCG------AGCCCCGGCCCCTCGCGGCGGGGCCCTTCCCTAGGCACTTCTTCCCGAGGACATGGTCAGAGGAGACCTTTGTGGTTAAAGGAGATCCGAAAACTTCAGAAGAGCACAAACCTCTTGTTAAGGAAAGCCCCCTTCAGCCGCCTGACAAGAGAAATATGTGGTAAATTCACTCGTGGTGTGGACTACAATTGGCAAGCGCAGGCCCTGTTGGCCCTACAAGAGGCAGCAGAAGCATTTCTAGTTCATCTCTTTGAAGATGCTTACCTTCTCACCTTACATGCTGGCCGAGTTACTCTTTTCCCAAAGGATGTGCAACTGGCAAGAAGGATCCGAGGCATTCAGGAAGGGCTGGGC

PanATGGGCCCGCGCCGCCGGAGCCGCAAGCCCGAGGCCCCGAGGAGGCGCAGCCCGAGCCCG------ACCCCCGGCCCCTCCCGGCGGGGCCCCTCCTTAGGCGCTTCCTCCCATCAACACAGTCGGCGGAGACAAGGTTGGCTAAAGGAGATCCGAAAGCTTCAGAAGAGCACACACCTCTTGATAAGGAAGCTCCCCTTCAGCCGCCTGGCAAGAGAAATATGTGTTAAATTCACTCGTGGTGTGGACTTCAATTGGCAAGCCCAGGCCTTATTGGCCCTACAAGAGGCAGCAGAAGCATTTCTAGTTCATCTCTTTGAGGACGCCTATCTCCTCACCTTACATGCTGGCCGAGTTACTCTCTTCCCAAAGGATGTGCAACTGGCCCGGAGGATCCGAGGCCTTGAGGAGGGACTTGGC

PapioATGGGCCCGCGCCGCCGGAGCCGCAAGCCCGAGGCCCCGAGGAGGCGCAGCCCGAGCCCG------ACCCCCGGCCCCTCCCGGCGGGGCCCCTCCTTAGGCCCTTCCTCCCGTCAACATGGTCGGCGGAGACAAGCTTGGCTAAAGGAGATCCGAAAGCTTCAGAAGAGCACACACCTCTTGATAAGGAAGTACCCCTTCAGCCGCCTGGCAAGAGAAATATGTGTTAAATTCACTCGTGGTGTGGACTTCAATTGGCAAGCCCAGGCCCTATTGGCCCTACAAGAGGCAGCAGAAGCATTTCTAGTTCATCTCTTTGAAGATGCCTATCTCCTCACCTTACATGCCGGCCGAGTTACTCTCTTCCCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCATTGAGGCGGGACTCGGC

PongoATGGGCCCGCGCCGCCGGAGCCGCAAGCCCGAGGCCCCGAGGAGGCGCAGCCCGAGC???ACCCCG???CCCGGCCCCTCCCGGCGGGGCCCCTCCTTAGGCGCTTCCTCCCATCAACACAGTCGGCGGAGACAAGCTTGGCTAAAGGAGATCCGAAAGCTTCAGAAGAGCACACACCTCTTGATAAGGAAGCTCCCCTTCAGCCGCCTGGCAAGAGAAATATGTGTTAAATTCACTCGTGGTGTGGACTTCAATTGGCAAGCCCAGGCCCTATTGGCCCTACAAGAGGCAGCAGAAGCATTTCTAGTTCATCTCTTTGAGGACGCCTATCTCCTCACCTTACATGCCGGCCGAGTTACTCTCTTCCCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCCTTGAGGAGGGACTCGGC

SaimiriATGGGCCCGCGCCGCCGGAGTCGCAAGCCCGAGGCCCCGAGGAGGCGCAGCCCGAGCCCG------ACCCCCGGCCCCTCCCGGCGGGGCCCC???---GGCGCTTCCTCACGTCCACGTGGTTATCGAAGGCAAGGTTGGCTAAAGGAGATCCGAAACCTTCAGAAGAGCACACACCTCTTGATAAGGAAGTACCCCTTCAGCCGCCTGGCCAGAGAAATATGTGTTAAATTCACTCGTGGTGTGGACTTCAGTTGGCAAGCCCAGGCCCTATTGGCCCTACAAGAGGCGGCAGAAGCATTTCTAGTTCATCTCTTTGAGGATGCCTATCTCCTCACCTTACATGCCGGCCGAGTTACTCTCTTCCCAAAGGATGTGCAACTGGCCCGGAGGATCCGGGGCATTGAGGAGGGACTCGGC

;end;

BEGIN TREES;TREE tree = (Macaca,Papio,(Chlorocebus,(Colobus,(((Lemur,Otolemur),(Saimiri,(Callithrix,Aotus))),(Nomascus,(Pongo,(Gorilla,(Pan,Human))))))));

END

Primates



S_arbS_bayS_casS_cerS_kluS_kudS_mikS_parS_pas



S_arbATGTCAAGCAAACAGCAATGG???---------ATCCAAAGTGATTCGAGT---------------------------------------------------------------------------------------------GGGAGATCTCTCAGTAATGTCAATAGGCTTGCA---------------------------------------------GGAGAT------------CAACAGTCTATTAACGACCGTGCGCTATCTTTATTGCAAAGGACAAGAGCAAGGAAGAATCTTTTCCCAAGAAGGGAGGAAAAGAGACGATATGAAGGTCCA------------CAGGATGACATAGATTTTGAAGCA------------------------------------------------------------------GAGTATGGAAACCAGGCAGGAAATTTGGAAACTGAGACAGAAAATGAGGATGAAACTGAGATGGAAACTGAAGCACCAACTGCCACGATAACTCATTCTTATGCCCTAGATAGGTACGTTAGGCAA---------------------------------------------------------AAAAGAAGACAAAAGCAAAGAAGGCAAGACCTGAAG------------------------------------------------------CGCGTCGAA------------------------------------------------------------------------------------------------------------------------AAGAAGTATAGCCCTAGTGAGTTAGCTCTGTATGAAATTCGAAAATACCAGCGTTCTACAGATTTACTTATCTCCAAAATTCCATTCGCAAGGTTAGTGAAGGAAGTTACGGATGAATTTACAACTAAAGACCAAGATTTGCGTTGGCAGTCAATGGCGATCATGGCGTTACAAGAAGCAAGTGAAGCATACTTGGTGGGGTTATTGGAGCACACCAACCTCTTGGCGTTGCATGCGAAAAGAATCACCATAATGAAGAAGGATATGCAACTCGCAAGGAGAATCAGAGGACAGTTTATT

S_bayATGTCTAGCAAACAAGAATGGGCTAACTCGGCCATTCAAAGTGAATCGAGT---------------------------------------------------------------------------------------------GGAAGATCACTCAGTAATGTCAATAGGCTTGCA---------------------------------------------GGAGAT------------CAACAGTCGATTAATGATCGTGCGTTATCCTTGTTACAAAGAACAAGAGCAAGGAAGAACCTGTTCCCAAGAAGAGAAGAAAGAAGACGGTATGAAGGTTCA------------CAGGATGACGTAGAATTTGAGGCA------------------------------------------------------------------GATTACGAAGACCATGCAGGAAATCTCGAAACTGAAGCAGAAAACGAAAATGAAACAGAAGTAGAAGAAGAATTATCGACGGCTAAGCAAACTCACTCGTACGCCTTAGATAGATATGTTAGACAA---------------------------------------------------------AAAAGAAGACAAAAACAAAGGAAGCAGGGCTTGAAG------------------------------------------------------CGTGTGGAA------------------------------------------------------------------------------------------------------------------------AAGAAATATAGCCCTAGCGAATTAGCTCTTTACGAAATTCGAAAATACCAGCGTTCCACAGATTTGCTAATCTCCAAAATCCCATTTGCAAGACTAGTCAAGGAAGTCACGGATGAGTTTACAACCAAAGATCAAGACCTGCGTTGGCAGTCAATGGCGATCATGGCGCTACAGGAAGCAAGTGAAGCATATTTAGTGGGATTATTAGAGCATACCAACCTCTTAGCATTGCATGCGAAAAGGATAACCATAATGAAAAAAGACATGCAACTGGCAAGGAGAATTAGAGGACAATTCATT

S_casATGTCAAGCAGA---------------------------------------AAATTTGTAGAACAAGGCCATGCTCAGAATTCTAGTAGTCATCTGTTCTCGAATATCCTCGATAATGAT------------------------???GGATCATTGAGCAATATAAATAGATTA???CTGGACCCGGATAATACAGAAGATTTATTACAGCAAGAAGTC------------------------------ATCAACGAGCGGGCACTTTCTCTTTTACAAAGGACTAGAGAACGTAGAAACTTATTACACCGATTTGAAGATAAAAGAAGGTAT---------TATAACCAAGGG?????????????????????---TCTGTGGCCAGTAGTCATTATCGTTCTAATGATGTGGGTGGGAACTTTCAATTTTTTGATCAAGAA????????????????????????------------------------------------------------------------------------------------------------------GCCATTGATGACGATTATGGAACCCTAGATCAATCCAACATTATCGATCGTCACCAA?????????---------------------------AAAGGAAACAAACATTCTCGTCAAGAAAGACACCATCAAAGAGAACTCAAACAACGTGTTGAAAAGATTAGAACTCAGAGACAGGTCGGAAATACG---------------------------------------------------------------------------------------???AAATTTACTCCAAGTAGTTTAGCCCTATATGAGATAAGGAAATACCAACGATCTTCAGAACTGTTGATATCGAAGATTCCCTTTACTAAATTAGTGAAGGAAGTCACTGATGAATTTACCGTGGAAGACCAACAACTTCATTGGCAATCGATGGCCATTGTCGCGTTACAGGAAGCCAGTGAAGCTTATTTAGTGGGTTTATTGGAGCATGCCAATTTATTAGCCATACATGCCAAGAGGATCACATTAATGAAGAAGGATATACAGTTGGCCAGAAGAATTAGAGGTCAATTCATT

S_cerATGTCAAGTAAACAACAATGGGTTAGTTCTGCTATTCAAAGTGATTCGAGT---------------------------------------------------------------------------------------------GGAAGATCACTCAGTAACGTCAACAGGCTTGCA---------------------------------------------GGAGAC------------CAACAATCTATTAACGATCGTGCGTTATCGTTATTGCAGAGAACAAGAGCGACAAAGAACCTGTTTCCAAGAAGAGAGGAAAGAAGACGTTATGAAAGCTCA------------AAAAGTGACCTAGATATCGAAACA------------------------------------------------------------------GACTACGAAGACCAAGCAGGTAATCTAGAAATCGAGACAGAAAATGAAGAAGAAGCTGAAATGGAAACTGAAGTACCTGCACCAGTGCGAACTCATTCATATGCCTTAGACAGATATGTTAGACAG---------------------------------------------------------AAAAGGAGGGAAAAACAAAGAAAGCAGAGCTTAAAG------------------------------------------------------CGCGTCGAA------------------------------------------------------------------------------------------------------------------------AAGAAATATACTCCTAGTGAATTAGCTCTGTACGAAATTCGAAAATACCAACGTTCCACGGATTTATTAATCTCCAAAATTCCATTTGCAAGGCTAGTGAAAGAAGTTACAGACGAGTTTACAACTAAAGATCAGGATTTACGTTGGCAGTCAATGGCGATTATGGCGTTACAGGAAGCAAGCGAAGCGTATCTGGTAGGATTATTGGAACATACAAACCTCTTGGCGCTGCATGCAAAAAGAATTACTATAATGAAGAAAGACATGCAACTAGCAAGAAGAATCAGGGGACAGTTTATT

S_kluATG---???????????????---------------------------------------------------------------------------------------------------AATGCTAGTATATCCAGCCAGACAGGCAGATCACTCAGTAACACCAATCGTCTG---------------------------------------------GGC???---CAAGAGCCCTCTCAACAATCTATCAACGAGAGGGCAATATCGCTTCTACAGCGTAATAGGGCCAGGAGGAAGATGTTACAAAGGCAAGAGGATAGAGAGCGATAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAGGCGTAATGAACTACCAGAGGAACAGCCTCCAACTGCGATAGGTACCATCAGAAGCAATATAAAAAAATCCAAGAGTCAGCGT??????TACAAACCAAGTGATGTGGCTTTGCAAGAGATTAGAAAGTACCAACGAAGCACTGAGCTTTTGATATCGAAAATGCCATTTGCCCGTCTCGTAAAAGAGGTCACTGAACAATTTAGTACAGACGAACAGCAGCTCCGGTGGCAGTCTATGGCTATCCTAGCATTACAGGAGGCTAGTGAAGCGTACTTGGTTGGTCTACTGGAGCACACAAACCTGTTAGCCTTACACGCTAAAAGAATTACCATTATGAAGAAAGATATGCAGCTGGCAAGGAGAATTAGGGGCCAGTTTATT

S_kudATGTCAAGCAAACAGCAATGGGCTAATTCGGCCATTCAAAGTGATTCGAGT---------------------------------------------------------------------------------------------GGAAGGTCACTCAGCAATGTGAACAGGCTAGTA---------------------------------------------GAAGAT------------CAACAGTCTATTAATGACCGTGCACTATCTTTGTTACAAAGAACAAGAGCAAGAAAAAATCTTTTTCCAAAAAGAGAAGAAAGAAGACGATATGAAGGTCCA------------CAAGATGACATGATTTTTGAAGAA------------------------------------------------------------------AACCATGAAGGCCAAGCGGAAAACTTGGAAACAGAGACAGAAAACGAGGATGAACGTGAAATGGAAACAGAGGTTCCAGACGCTACCCGAACACATTCATACGCTCTAGATAGATATGTTAGGCAG---------------------------------------------------------AAAAGGAGACAAAAACAAATGAAGCAGGGTTTGAAA------------------------------------------------------CGCGTAGAA------------------------------------------------------------------------------------------------------------------------AAGAAATACAGTCCCAGTGAATTAGCTCTGTACGAAATCAGAAAATATCAACGTTCTACAGATTTGCTTATCTCTAAAATTCCATTTGCAAGACTGGTAAAAGAAGTTACAGACGAGTTTACAACTAAAGACCAAGATTTGCGCTGGCAATCGATGGCGATCATGGCGCTACAGGAGGCAAGTGAAGCATACTTGGTGGGGCTATTGGAGCATACCAACCTACTTGCGCTGCATGCGAAGAGAATAACCATAATGAAGAAGGATATGCAACTAGCAAGGAGAATTAGAGGACAGTTCATT

S_mikATGTCAAGCAAACAGCAATGGGCTAATTCTGCTATTCAAAGTGATTCAAGT---------------------------------------------------------------------------------------------GGAAGATCACTCAGCAATGTCAACAGACTTGTT---------------------------------------------GGAGAG------------CAACAATCCATTAACGATCGTGCATTATCATTATTGCAAAGGACAAGAGCAAGAAAGAATCTATTTCCAAGAAGAGAAGAAAAGAGACGATATGAGAACCCA------------AAGGATGACGTAGATTTTGAAACT------------------------------------------------------------------GACTATGATGGCCAAGCAGATGATTTGGAGATAGAAACTGAGAACGAAGAAGAAACTGAAGTGGCTACTGAAGTATCAACGTCCGCGCGAACACATTCGTATGCCTTGGACAGATACGTTAGACAG---------------------------------------------------------AAAAGAAGAGAAAAGCAAAGGAAACAGGGCTTAAAG------------------------------------------------------CGTATTGAA------------------------------------------------------------------------------------------------------------------------AAGAAGTACAGTCCAAGTGAATTAGCTCTATATGAAATTCGAAAGTACCAACGTTCCACGGATTTATTGATTTCCAAAATTCCTTTTGCAAGGCTTGTAAAAGAAGTTACGGATGAGTTCACGACTAAGGATCAAGATTTACGCTGGCAGTCAATGGCGATCATGGCACTACAAGAAGCAAGTGAAGCCTATTTGGTGGGTCTATTGGAGCATACCAACCTTTTGGCATTGCACGCGAAAAGGATAACTATAATGAAGAAGGACATGCAACTAGCAAGGAGAATCAGAGGACAATTCATT

S_parATGTCAAGTAAACAGCAATGGGCTAGTTCTGCTATTCAAAGTGATTCGAGT---------------------------------------------------------------------------------------------GGAAGATCACTCAGTAATGTCAACAGGCTTGCA---------------------------------------------GGAGAC------------CAGCAGTCTATTAACGATCGTGCGTTATCGTTACTGCAAAGGACGAGAGCAAGAAAGAACTTACTACCCAGAAGAGAAGAAAGAAGGCGTTATGAGAGCTCA------------AAAAATGACCTAGATTTTGAAACA------------------------------------------------------------------GACTACGAAGACCAAGCAGGTAATCTGGAAACTGAAACAGAGAATGAAGAAGAAGCTGGAATGAAAACCAAGGCACCAATGTCCGCCCGAACTCATTCGTATGCTTTAGACAGATACGTTAGGCAG---------------------------------------------------------AAAAGAAGGGAAAAGCAAAGAAAGCAGGGCTTGAAG------------------------------------------------------CGTGTCGAA------------------------------------------------------------------------------------------------------------------------AAGAGATATAGTCCTAGTGAATTAGCTCTGTACGAAATTCGAAAATATCAACGTTCTACAGATTTATTAATTTCCAAAATTCCATTTGCAAGGCTAGTGAAAGAGGTTACAGATGAGTTTACAACCAAAGATCAAGATTTACGTTGGCAGTCAATGGCGATTATGGCGCTGCAGGAGGCAAGTGAAGCATACTTAGTAGGGTTACTGGAACATACCAACCTCTTGGCGTTGCATGCGAAAAGAATAACTATAATGAAGAAAGATATGCAACTAGCAAGAAGAATTAGGGGACAGTTCATT

S_pasATGTCTAGCAAACAAGAATGGGCTAACTCGGCCATTCAAAGTGAATCGAGT---------------------------------------------------------------------------------------------GGAAGATCACTCAGTAATGTCAACAGGCTTGTA---------------------------------------------GGAGAC------------CAACAATCGATTAATGATCGTGCGTTATCCTTGCTGCAAAGAACAAGAGCAAGGAAGAACCTGTTTCCAAGAAGAGAAGAAAGAAGACGATATGAAGGTCCT------------CAGGACGACGTAGAATTTGAGGCA------------------------------------------------------------------GATTATGAGGATCATGCAGGAAATCTCGAAACGGAAACAGAAAACGGAGATGAAACTGAAGTAGAAGCAGATGTGTCAACGGTTAAGCAAACTCACTCGTACGCCTTAGATAGATATGTTAGACAA---------------------------------------------------------AAACGGAGACAAAAACAAAGGCAGCAGGGCTTGAAG------------------------------------------------------CGTGTGGAA------------------------------------------------------------------------------------------------------------------------AAGAAATATAGTCCTAGCGAATTAGCTCTCTACGAAATTCGAAAATACCAGCGTTCTACAGATTTACTAATCTCTAAAATTCCATTTGCAAGATTAGTTAAGGAAGTCACGGATGAGTTTACAACCAAAGATCAGGACTTGCGTTGGCAGTCTATGGCGATCATGGCGCTCCAAGAAGCAAGTGAGGCATATTTGGTGGGATTATTAGAGCATACCAACCTCTTAGCTTTACATGCGAAAAGGATAACCATAATGAAAAAAGACATGCAACTAGCAAGGAGAATTAGAGGACAATTTATT

;end;

BEGIN TREES;TREE tree = (S_arb,S_kud,(((S_bay,S_pas),(S_cas,S_klu)),(S_mik,(S_cer,S_par))));

END;

Saccharomyces



borealiscanadensiselliottifurgasonileucophryslimacismalaccensismimbresmobilisrostratasilvanathermophilatropicalis



borealisAAGAGGAGAAGCGTTTCTAATTAATCTCAATAAAGATCAAATAATGCTACA???AATAATTAAGTA---AATTAAAGATCGAAATCTGCAGGT---GGATAAATGAAT---AAATAAAAAAACCCA---TCTTAACAGTAAAATAAGCCTGTAACA------AAAAAGAGATAATCCTCTGGTGAAAAATATGAATCTGCAAGAGATAAAGTAATTAGAGGATTCAGACCAGGAGATAATGCTTTGAAAGAACTTAAATAATATAATTAAAATCCATCACTATTTATTCGAAAACTACCTTTTTAGAGGTTAGTGAGAGAAATATCAACACGATTGTCAGATCAGGATTAAATTAGATGGACAAGTATTGCTCTAATCCTATTATAAACAGTTACAGAAGATTATATGATATCTTTTTATGAAGATGCGAATGCATGTGCTTTACACGCTAAAAGAGTTACCCTTATGAGCAAAGATATGATTCTAGCTGCTAGAATTAGAGGATAAAGGAATGTT

canadensisAAGAGGAGAAGTGTTTCTAATTAATCTCAACAAAGATCAAATAATGCAACA???AATAATTAAGTA---AATTAAAGATCGAAATCTGCAGGT---GGATAAATGAAT---AAATAAAAAAACCCA---TCTTTACAGTAAAATAAGCCTGTAACT------AAAAAGAGATAATCCTCTGGTGAAAAATATGAATCTGCAAGAGATAAAGTAATTAGAAGATTTAGACCAGGAGATAATGCTTTGAAAGAACTTAAATAATATAATTAAAATCCATCACTATTTATTCGAAAACTACCTTTTTAGAGGTTAGTGAGAGAAATATCAACACGATTGTCAGATTAGGATTAAATTAGATGGACAAGTATTGCTCTAATTCTATTATAAACTGTTACAGAAGATTATATGATATCATTTTATGAAGATGCGAATGCATGCGCTTTACATGCTAAAAGAGTTACCCTTATGAGCAAAGATATGATTCTTGCTGCTAGAATTAGAGGATAAAGGAATGTT

elliottiAAAAGAAGAAGCAATTCTAACTAAAATTAAGAGAGGTCTGAGAGTTCT---AAAAAAATTAAATAAGATAATTAAAGATCTAAATCAGCGGGAATA??????GATAAT---AAA????????????---????????????????????????AGCACA???---AAAAGATAATCATCAGAGGAAAGATATGAATCAGCAAGAGATAAAGTTATCAGAAGATTTAGACCTGGTGATAATGCTCTTAAATAATTAAGATAATATAATCAAACTCCTTCGCTGCTTATAAGAAAATTGCCTTTTTAAAGGCTAATAAGGGAAATTTCTACAAGAATGACAGAAGAAGATCAGTTAAGATGGACAAGTTTTGCTTTAGTTTTACTTTAAACTGTTGTAGAAGATTATATGGTTTCATTTTTTGAAGATGCAAATGCTTGTGCTCTACATGCTAAAAGAGTAACTCTAATGTCTAAGGATCTTGCTCTTGCAGCAAGAATAAGGGGATAAAAAAATGTT

furgasoniAAAAGGAGGAGCAATTCTAACCAAAATTAATCATCATCTAATAATGTT---GCTAATAATTAATCTGCTAATCAGAGATCAAAATCAGCAGGG---CCATAAGGGAAT---AAATAAAAAAATTAG---CCTCAATAATAAAAAAAGGCTGTTTCC------AAAAAGAGATAATCATCTGGTGAGAAATATGAATCGGCAAGAGATAAAGTAATAAGAAGATTTAGGCCAGGGGATAATGCATTAAAAGAAATGAGATAATATAATCAAACTCCATCTCTACTAATAAGAAAATTGCCTTTTTAGAGGCTAGTAAGGGAAATATCAACAAGATTGACAGAGGAAGATAATTTGAGATGGACAAGCTTTGCCTTAGTGTTATTATAAACTGTTGTTGAAGATTACATGGTATCATTTTATGAAGATGCAAATGCATGTGCTTTACATGCTAAAAGAGTTACCTTAATGACAAAAGATTTAGCACTAGCTGCAAGAATTAGAGGATAAAAAAATGTT

leucophrysAGAAGAAGGAGTAATTCAAATCAAACTTAATAAAGATCATAAAGCGCT---TCCAATAACCCATAACCACAATAAAGATCAAAATCATCAGGA---AATCAAGAAAAT---AAATAAGCGAAAGCA---AAGCAATAATAAAAGAAACCAACTACAACAAAGAAAAAGAGATAGTCTTCAGGTGATAAGTATGAATCTGCTAGGGATAAAGTGATAAGAAGATTTAGACCTGGAGATAATGCCTTAAAAGAATTAAGATAATATAACTAAACCCCATCATTATTAATCAGAAAATTACCTTTTTAGAGACTAGTGAGAGAAATATCAACAAGAATGTCAGAGCAAGAGTAATTAAGATGGACCAGTTTTGCTTTGGTTCTATTATAGACAGTTGTGGAGGACTATATGGTCTCTTTCTATGAAGATGCTAATGCCTGT??????????????????????????????????????????????????????????????????????????????

limacisAAAAAGAGGAGTAATTCTAATTAAAGCTAATAAAGATAGAGTAGTGCA---AATAATGATTAATCAACTAATCGAAGATCTAAATCTGCAGGA---AACCAAGGGAAT---AAATAAAAGGGTTTA---CCTCAATAATAAAAAAAGGCTGTTTCTACGAAAAAAAAGAGATAATCTTCTGGTGAGAAGTATGAATCTGCTAGAGATAAAGTAATAAGAAGATTTAGACCTGGAGATAATGCACTAAAAGAACTCAGATAATATAATTAAACTCCATCATTATTAATTAGAAAATTACCTTTTTAGAGATTAGTAAGAGAAATATCAACCAGAATGACAGAAGAGGATTCGCTGAGATGGACTAGTTTTGCATTAGTATTATTGTAAACAGTTGTTGAAGATTATATGGTATCATTTTATGAAGATGCTAATGCATGT??????????????????????????????????????????????????????????????????????????????

malaccensisAAAAGGAGGAGTAATTCAAATTAAGATTAATAGAGATCGGGTAGCTAG---AAAAAAAATAAATAGGATAATTTAAGATCTAAATCTGCTGGGATA??????GAGAATGAAAAA????????????---????????????????????????AGCACAAAAAAGAAAAGAGAATCATCTGGCGAAAAATATGAATCTGCAAGAGATAAAGTTATAAGAAGATTTAGGCCAGGAGATAATGCTCTTAAATAATTAAGATAATATAATTAGACTCCATCATTGCTTATAAGAAAATTACCCTTTTAGAGGTTGATAAGAGAGATTTCTACAAGAATGACAGAAGAGGATTAGCTAAGATGGACTAGTTTTGCTCTTGTTTTACTTTAAACAGTTGTAGAAGATTATATGGTTTCCTTTTTTGAGGATGCTAATGCTTGTGCTCTCCATGCTAAAAGAGTAACTCTAATGTAAAAAGATCTTGCCCTTGCTGCAAGAATAAGGGGATAAAAAAATGTT

mimbresAGCAAAAGAAGTAATTCAAACCAGCCATAGTAAAAATCTAATAAATAAATAAGCAATATTTAAGAAAATAAAAGACGATCAAAATCTGCAGGT---GGGCCAACTAAT---AAACCAAAAAATCCA---CCTTAGTAATAAAAAAAGGTAGCCACATCAAATAAAAAGAGATAATCATCTGGTGAAAAGTATGAATCTGCTAGAGATAAGGTAATAAGAAGATTTAGACCAGGTGATAATGCTCTCAAAGAGCTCAGATAATATAATTAGAATCCTTAGTTATTAATAAGAAAATTACCTTTTTAGAGGTTAGTAAGAGAAATAACGTAAAGGATGACAGTAGAAGAATAGTTGAGATGGACAAGTTTTGCCCTAGTTATATTATAAACAATATCTGAAGATTATATGGTCTCATTTTTTGAAGATGCAAATGCTTGTTGCTATCATGCTAAAAGAGTTACTCTTATGACAAAAGACATGGCTCTTGCTGCTAGAATTAGAGGATAAAAAAATGTT

mobilisAAAAGGAGAAGCAATTCTAACCAAAATTAATCAGCATCAAATAATGTT---TCAAATAATTAATCTGCAAATCAGAGATCAAAGTCAGCAGGA---CCATAAGGGAAT---AAATAAAAAAATTAG---CCTCAATAATAAAAAAAGGCTGTTTCC------AAAAAGAGATAATCATCAGGTGAAAAATATGAATCAGCAAGAGATAAAGTAATCAGAAGATTTAGGCCAGGGGATAATGCTTTAAAAGAAATGAGATAATATAATCAAACTCCATCTCTACTAATAAGAAAATTACCTTTTTAGAGGCTAGTAAGGGAAATATCAACAAGATTGACAGAGGAAGATAACTTGAGATGGACAAGCTTTGCTTTAGTGTTATTATAAACTGTTGTTGAAGATTACATGGTATCATTTTATGAAGATGCAAATGCATGCGCTTTACATGCAAAAAGAGTTACCTTAATGACAAAAGATTTAGCACTAGCTGCAAGAATTAGAGGATAAAAAAATGTT

rostrataAAGAGGAGAAGTGTTTCTAATTAATCTCAATAAAGATCAAATAATGCAACA???AATAATTAAGTAAATAATTAAAGATCGAAATCTGCAGGT---GGATAAATGAAT---AAATAAAAAAACCCA---TCTTTACAGTAAAATAAGCCTGTATCAACTAAGAAAAAGAGATAATCCTCTGGTGAAAAATATGAATCAGCAAGAGATAAAGTAATTAGAAGATTTAGACCAGGAGATAATGCTTTGAAAGAACTTAAATAATATAATTAAAATCCATCACTATTTATTCGAAAACTACCTTTTTAAAGGTTAGTGAGAGAAATATCAACACGATTGTCAGATTAGGATTAAATTAGATGGACAAGTATTGCTCTAATTCTATTATAAACCGTTACAGAAGATTATATGATATCATTTTATGAAGATGCGAATGCATGCGCTTTACATGCTAAAAGAGTTACCCTTATGAGCAAAGATATGATTCTTGCTGCTAGAATTAGAGGATAAAGGAATGTT

silvanaAAGAGGAGGAGTAATTCAAACTAAAATCAACAAAGATCTACGAGCACA---ACTAATAATTAATCGAATTAATAGAGATCAAAATCTACTGGA---AACCAAGGTAAT---AAATAGGTTCCTGCAACAGCTTAGAAATAAAAAAAGCCAGATACCACAAAGAAAAAGAGATAATCATCTGGTGAAAAATATGAGTCTACAAGAGATAAAGTTATTAGGAGATTTAGACCTGGTGATAATACATTAAAGGAACTTCGATAATATAATTAAGCTCCAACTCTGATGATTAGGAAACTACCTTTTTAGAAGTTAGTGAGAGAAATAGCATCTAGAATGACAGAATTAGAGCATTTGAGATGGACTAGTTAATCCTTGATGCTCTTACAATCAGTTACTGAGGATTATATGGTATCGTTTTATGAGGATGCTAACGCCTGT??????????????????????????????????????????????????????????????????????????????

thermophilaAAAAGGAGGAGTAATTCAAATCAAAATTAATAGAGATCTGATAGCCTG---AAAAAAAATAAATAGGATAATTTGAGATCTAAATCTGCTGGGAAT??????GGGAATGAAAAA????????????---????????????????????????AGTACAAAAAAGAAAAGGGAGTCATCAGGAGAAAAATATGAGTCTGCAAGAGATAAAGTTATTAGAAGATTTAGGCCAGGGGATAATGCCCTTAAGCAATTAAGATAATATAATTAGACTCCATCATTGCTAATAAGAAAATTACCCTTTTAGAGGTTAATAAGAGAGATTTCTACAAGAATGACAGAAGAAGATTCGCTGAGATGGACAAGTTTTGCTCTGGTTTTACTTTAAACAGTTGTAGAAGATTATATGGTTTCATTTTTTGAAGATGCGAATGCTTGTGCTCTCCATGCTAAAAGAGTTACTCTCATGTCTAAAGATCTTGCTCTTGCGGCAAGAATTAGGGGATAAAAAAATGTT

tropicalisAAAAGGAGAAGCAATTCTAACCAAAATTAATCAGCATCGAATAATGTT---TAAAATAATTAATCTGCAAATCAGAGATCAAAGTCAGCAGGA---CCATAAGGGAAT---AAATAAAAAAATTAG---CCTCAATAATAAAAAAAGGCTGTCACC------AAAAAGAGATAGTCATCAGGTGAAAAATATGAATCAGCAAGAGATAAAGTAATTAGAAGATTTAGGCCAGGGGATAATGCTTTAAAAGAAATGAGATAATATAATCAAACTCCATCTCTACTAATAAGAAAATTACCTTTTTAGAGGCTAGTAAGGGAAATATCAACAAGATTGACAGAGGAAGATAACTTGAGATGGACAAGCTTTGCCTTAGTATTATTATAAACTGTTGTTGAAGATTACATGGTATCGTTTTATGAAGATGCAAATGCATGCGCTTTACATGCAAAAAGAGTTACCTTAATGACAAAAGATTTAGCACTAGCTGCAAGAATTAGAGGATAAAAAAATGTT

;end;

BEGIN TREES;TREE tree = (borealis,canadensis,(rostrata,(mimbres,((furgasoni,(mobilis,tropicalis)),((elliotti,(malaccensis,thermophila)),(limacis,(leucophrys,silvana)))))));

END;

Tetrahymena



Trichoderma_asperellumTrichoderma_atrovirideTrichoderma_harzianumTrichoderma_longibrachiatumTrichoderma_reeseiTrichoderma_virens



Trichoderma_asperellumATGGCT---------------------------------------------CCTCGCCAATCAACTTCAGGAACCCAACAACGCTAT---------------???GCCAGACCAAGCGACATTCAGCCGGGCGATCCACTACCTACGAGACAGAAACGTCGATATCGCCCAGGCACCGTTGCGCTACGAGAAATCAGGCAATATCAAGCCAATACAAAGCTTCTACTTCTAAAACTTCCGTTTATGCGACTCGTCCGTGAAATTGGATTAAATTGTCGCCCGAGAGGAAAAGAATTTAGATGGCAGAGCCAGGCAATCCAGGCACTGCAAGAGGCTGCAGAAGCATTTATGGTACATCTATTTGAAGATGCACAGCTATGCGCGGTCCATGCGAAAAGAGTGACACTTATGCAAAAAGACATTCAGCTGGCGAGGAGGATTCGAGGTATATGGGGCGGGCTTGGT

Trichoderma_atrovirideATGGCT---------------------------------------------CCTCGCCAATCAACGGCAGCGCCCAAACAACGATAT---------------???GCCAGACCAAGCGACATACAGCCGGGCGATCCACTGCCTACGAGACAGAAGCGGCGATATCGCCCGGGCACCGTTGCGCTGCGAGAAATCAGGCAATATCAAGCCAATACAAAGCTTCTACTCCTAAAACTTCCATTTATGCGACTCGTTCGCGAAATTGGATTGAATTGTCGGCCGAGAGGGAAAGATTTTCGATGGCAGAGTCAGGCCATCCAGGCACTGCAAGAGGCCGCAGAAGCATTCATGGTACATCTTTTTGAAGATGCGCAGCTATGCGCGGTCCATGCGAAGAGAGTGACACTTATGCAAAAAGACATCCAGCTAGCGAGGAGGATTCGAGGTATATGGGGCGGGCTTGGT

Trichoderma_harzianumATGGCT---------------------------------------------CCTCGTCAAAAAACTTCGGCG---------------GCCTCACAGAAATTGCGCTCCAGACCAAGCGATGTACAGCCGGGCGATCCATTACCTACAAGACAGAAGCGACGATATCGGCCGGGCACCGTTGCGTTGCGAGAGATCAGGCAATACCAGTCAAATACAAAGCTTTTATTGTTAAAACTACCATTCATGCGCCTTGTTCGTGAAATTGGATTGAATTGTCGGCCGAGAGGGAAAGACTTCAGATGGCAGAGTCAGGCTATTCAGGCACTACAAGAGGCCGCGGAGGCCTTTATGGTACATCTTTTTGAGGATGCGCAGCTATGCGCTGTCCACGCAAAGAGAGTTACACTTATGCAAAAAGATATACAGCTTGCGAGGAGAATCCGAGGCATCTGGGGCGGCCTTGGT

Trichoderma_longibrachiatumATGCCT---------------------------------------------CCTCGTCAGTCCACGGCGGGA---------------ACCTCACAGAAAGTGCGCTCCCGCCCGAGCGATGTACAGCCGGGCGATCCACTGCCTGCCAGACAGCGACGACGATACCGCCCGGGCACCGTCGCATTGCGGGAAATCAGGCAATACCAGGCCAACACGAAGCTTTTGCTGCTGAAGCTGCCATTTATGCGCCTCGTTCGGGAGATTGGATTGAATTGCCGTCCAAGGGGGAAAGAGTTCAGGTGGCAGAGCCAGGCCATCCAGGCGCTGCAAGAAGCGGCAGAGGCCTTCATGGTACATCTGTTTGAGGATGCGCAGCTGTGCGCTGTGCACGCCAAGAGGGTTACCCTCATGCAGAAAGACATACAGCTTGCGAGGAGGATTCGAGGCATCTGGGGCGGCCTCGGT

Trichoderma_reeseiATGCCCTCACCAACCCCAAATCGTCTTCTGCTAACCCCCAACTCTTCAGCG------------------------------------------------------------------------------GGCGACCCACTGCCTACGAGACAACGACGACGATACCGCCCCGGCACTGTCGCATTGCGGGAAATCAGGCAATACCAGGCCAACACGAAGCTTTTGCTGCTGAAGCTGCCGTTTATGCGCCTCGTTCGAGAAATTGGATTGAATTGTCGTCCGACGGGCAAAGAGTTTAGATGGCAGAGCCAGGCCATCCAGGCGCTGCAAGAAGCCGCAGAGGCCTTCATGGTACATTTGTTTGAGGACGCGCAGCTGTGCGCTGTACACGCCAAGAGGGTCACCCTGATGCAGAAAGACATACAGCTTGCAAGGAGAATCCGGGGCATCTGGGGCGGCCTTGGC

Trichoderma_virensATGGCT---------------------------------------------CCTCGTCAATCAACGTCAGGG---------------GCTTCACAAAAATTGCGTTCCAGACCAAGCGATGTACAGCCGGGCGATCCATTACCTACGAGACAGAAACGACGATATCGCCCAGGCACCGTTGCGTTGCGAGAAATCAGGCAATACCAGTCAAATACGAAGCTGTTGCTACTAAAACTGCCATTCATGCGCCTTGTTCGTGAAATTGGATTGAATTGTCGCCCGAGAGGAAAAGATTTTAGATGGCAGAGCCAGGCCATTCAGGCGCTACAAGAGGCCGCGGAGGCATTCATGGTACATCTTTTTGAGGATGCGCAGCTGTGCGCTGTCCACGCAAAGAGAGTTACCCTTATGCAAAAAGACATACAACTGGCGAGGAGAATTCGAGGCATCTGGGGCGGCCTTGGT

;end;

BEGIN TREES;TREE tree = (Trichoderma_asperellum,Trichoderma_atroviride,((Trichoderma_harzianum,Trichoderma_virens),(Trichoderma_longibrachiatum,Trichoderma_reesei)));

END;

Trichoderma

cenh3 evolution reflects meiotic symmetry as predicted by ... · cenh3 evolution reflects meiotic...

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