cdha_hinf6210_datacleaning_v1.2_sept20_2011
TRANSCRIPT
Data Cleaning Process in the project: Determination and visualization of family practice sizes and characteristics in Nova Scotia Conrad Ng Dr. Anatoliy Gruzd Dr. Calvino Cheng Intern Supervisor Site Supervisor
1. Intro 2. Background 3. Key Indexes 4. Cases 5. Summary 1 of 14
1. Intro 2. Background 3. Key Indexes 4. Cases 5. Summary 2 of 14
Project: Determination and visualization of family practice sizes and characteristics in Nova Scotia
Purpose: To help better utilize laboratory resources Goals: 1) Determinate practice size of outpatient setting 2) Discover physicians and patient migration patterns 3) Benchmark for problematic cases a) Over usage b) Under usage
1. Intro 2. Background 3. Key Indexes 4. Cases 5. Summary 3 of 14
Descriptive Statistics (Before cleaning)
Patient count per
Physician Clinic
Mean 392.61 585.17
Standard Error 16.13 50.29
Median 122 162
Mode 1 1
Standard Deviation 501.11 1257.15
Range 2429 18434
Minimum 1 1
Maximum 2430 18435
Sum 378868 365731
Count 965 625
Rows 1007974
Columns 28
Physicians 966
Clinics 626
Patients 288963
No addresses 23
a) Physicians PMB Problem
b) Clinics Address Problem
c) Time Active Order Date √ - slight problem
d) Patients Patient Millennium ID √
e) Order Order ID √
1. Intro 2. Background 3. Key Indexes 4. Cases 5. Summary 4 of 14
Key Indexes
1. Intro 2. Background 3. Key Indexes 4. Cases (1/4) 5. Summary 5 of 14
PMB – Physician Registration Number PMB_i2
DR_NAME PMB PMB_i2
Cameron , Marianne C (FF Spring Garden) 90802 14653 Cameron , Marianne C (PRIM) 14653 14653 Cameron , Marianne C (Tacoma) 92526 14653 Cameron , Stewart Martin 7748 7748 Campbell , Donald MacLeod 4055 4055 Campbell , Genevieve Marie 6678 6678 Campbell , Glenn R (FF Dartmouth) 90808 11889 Campbell , Glenn R (FF Sackville) 90809 11889 Campbell , Glenn R (FF Spring Garden) 90807 11889 Campbell , Glenn R (PRIM) 11889 11889
Kinley , Cecil Edwin (Park West) 90926 90926 Kinley , Cecil Edwin, Jr (Parkland) 7453 7453
STREET_ADDR STREET_ADDR2 STREET_ADDR3
Rapha Medical Centre 50 Tacoma Dr
Suite 8 50 Tacoma Drive
Medicine in Motion 5-121 Illsley Avenue
Medicine in Motion 5-121 Ilsley Avenue
Tantallon Family Practice 5150 St. Margaret's Bay Road Suite 202
Scotia Square Medicine 5201 Duke Street Suite #0270
Scotia Square Medical 5201 Duke Street Suite 0270
Scotia Square Medical Clinic 5201 Duke Street Suite 0270
Sackville Medical Clinic PO Box 8-520 Sackville Dr
Family Practice Clinic PO Box 94
1. Intro 2. Background 3. Key Indexes 4. Cases (2/4) 5. Summary 6 of 14
Address
STREET_ADDR STREET_ADDR2 STREET_ADDR3
Rapha Medical Centre 50 Tacoma Dr
Suite 8 50 Tacoma Drive
Medicine in Motion 5-121 Illsley Avenue
Medicine in Motion 5-121 Ilsley Avenue
Tantallon Family Practice 5150 St. Margaret's Bay Road Suite 202
Scotia Square Medicine 5201 Duke Street Suite #0270
Scotia Square Medical 5201 Duke Street Suite 0270
Scotia Square Medical Clinic 5201 Duke Street Suite 0270
Sackville Medical Clinic PO Box 8-520 Sackville Dr
Family Practice Clinic PO Box 94
1. Intro 2. Background 3. Key Indexes 4. Cases (2/4) 5. Summary 7 of 14
Address
Name_ADDR1 Dept_ADDR2 St._ADDR3 PO_ADDR4 ADDR5 Rapha Medical Centre 50 Tacoma Dr. 50 Tacoma Dr. Suite 8 Medicine in Motion 121 Ilsley Ave. Suite 5 Medicine in Motion 121 Ilsley Ave. Suite 5
Tantallon Family Practice 5110 St Margarets Bay Rd. Suite 202
Scotia Square Medicine 5201 Duke St. Suite 270 Scotia Square Medical 5201 Duke St. Suite 270 Scotia Square Medical Clinic 5201 Duke St. Suite 270 Sackville Medical Clinic 520 Sackville Dr. PO Box 8 Family Practice Clinic PO Box 94
(3 Columns 5 Columns)
1. Intro 2. Background 3. Key Indexes 4. Cases (2/4) 5. Summary 8 of 14
Address
1. Intro 2. Background 3. Key Indexes 4. Cases (3/4) 5. Summary 9 of 14
Address
Name_ADDR1 St._ADDR3 ADDR5 Clinic_Type
5991 Spring Garden Rd. Suite 820 General
5991 Spring Garden Rd. Suite 850 General
Dr. Kevin Carbyn 5991 Spring Garden Rd. Suite 1040 General
Family Focus Medical Clinic 5991 Spring Garden Rd. Suite 101 Family Focus
50 Tacoma Dr. General
50 Tacoma Dr. Suite 8 General
Tacoma Family Medicine 58 Tacoma Dr. Suite 101 Walk-In
Tacoma Family Medicine 70 Tacoma Dr. Suite 101 Walk-In
B2V2JS B2V2J5 BOJ2L0 B0J2L0 BEH2Y9 B3H2Y9 Sample map it! 1) B3L2T2 2) BOL2T2
Postal Code
1. Intro 2. Background 3. Key Indexes 4. Cases (4/4) 5. Summary 10 of 14
gpsvisualizer.com
Descriptive Statistics (Before and After cleaning)
Before After
Rows 1007974 925680
Columns 28 37
Physicians 966 426
Clinics 626 198
Patients 288963 278689
No addresses 23 0
1. Intro 2. Background 3. Key Indexes 4. Cases 5. Summary 11 of 14
Descriptive Statistics (Before and After cleaning)
1. Intro 2. Background 3. Key Indexes 4. Cases 5. Summary 12 of 14
Physician Clinic
Before After Before After
Mean 392.61 814.15 585.17 1605.196
Standard Error 16.13 27.41 50.29 186.7024
Median 122 797 162 773
Mode 1 1 1 1
Standard Deviation 501.11 565.74 1257.15 2633.762
Range 2429 2604 18434 19354
Minimum 1 1 1 1
Maximum 2430 2605 18435 19355
Sum 378868 346830 365731 319434
Count 965 426 625 199(-2)*
*Recent adjustment to duplication
1. Intro 2. Background 3. Key Indexes 4. Cases 5. Summary 13 of 14
How did the errors occur?
• Data Entry Errors (100,000 new daily) Average 200 errors for health card numbers, 0.5% [according to Data integrity officer]
• Changes in address, names • Amalgamation of 6 different systems in the past • Need for compatibility with other systems [Presently 3]
• Need for greater authority control at input level (ex: Electronic Forms, index specialist)
• Index! or relationship to indexed data! • Automation • Increase data usage/digestion so it becomes comparable to
other counts
Summary
1. Intro 2. Background 3. Key Indexes 4. Cases 5. Summary 14 of 14
Questions? Comments?
Conrad Ng [email protected]