bioremediation of weathered-building stone surfaces

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Bioremediation of weathered-building stone surfaces Alison Webster and Eric May School of Biological Sciences, University of Portsmouth, Portsmouth, Hampshire, PO1 2DY, UK Atmospheric pollution and weathering of stone surfaces in urban historic buildings frequently results in disfig- urement or damage by salt crust formation (often gypsum), presenting opportunities for bioremediation using microorganisms. Conventional techniques for the removal of these salt crusts from stone have several disadvantages: they can cause colour changes; adversely affect the movement of salts within the stone structure; or remove excessive amounts of the original surface. Although microorganisms are com- monly associated with detrimental effects to the integrity of stone structures, there is growing evidence that they can be used to treat this type of stone deterioration in objects of historical and cultural significance. In particular, the ability and potential of different microorganisms to either remove sulfate crusts or form sacrificial layers of calcite that consolidate mineral surfaces have been demonstrated. Current research suggests that bioremediation has the potential to offer an additional technology to conservators work- ing to restore stone surfaces in heritage buildings. Introduction The term bioremediation covers a range of processes that use microorganisms to return contaminated environments to their original condition. The use of microorganisms or their enzymes to deal with contaminated soils, oil spills or chemical waste are well-developed biotechnologies [1,2] but the application of bioremediation to ameliorate the effects of stone deterioration is less well known. Deterio- ration of building stone begins from the moment it is quarried due to natural weathering processes [3]. Other factors, sometimes acting synergistically, including crystallization of soluble salts, pollution and biological colonisation can accelerate natural deterioration [4–8]. Whatever the cause of stone deterioration, many buildings require remedial measures to stabilize the surface layer and prevent further loss from external sources. This review offers an insight into how biotechnology research has addressed the needs of conservators working with building stone and considers how far bacterially mediated bioremediation can be used in practice. Stone and soluble salts Internal pressures created by crystallization, hydration and thermal expansion of salts are a significant cause of damage to stone [9–11]. Stone is hydrophilic, and will take up water from the ground and adjoining stone. Soluble salts from the soil, the atmosphere and applications on the surface can dissolve in this aqueous environment and move through the pores. Highly soluble salts are usually deposited on the surface, and can be brushed off; however, less soluble salts might expand below surface level, ultimately causing the loss of the outer layers [12,13]. Accumulation of sulfates, many derived from the oxidation of sulfur dioxide, is of particular concern. Those tech- niques that attempt to remove salts from heritage stone artefacts by washing with water are either not practicable or accelerate degradation [14]. Nitrates, which can originate from the numerous oxides of nitrogen present in the atmosphere (N 2 O, NO, N 2 O 3 , NO 2 ,N 2 O 5 ), can also accumulate but because they have a high solubility they migrate from the surface or are washed away by rain [15]. Thus, unlike sulfates, nitrate accumulation is not a surface phenomenon and has not been the subject of extensive study. Black sulfate crusts Many of the additional factors that accelerate deterio- ration of stone are still being definitively characterised, and much work has been carried out to highlight the role of biological organisms in the blackening of stone [16,17]. It is, however, the effects of anthropogenic sources of pollution on building stone that are arguably the single most important factor in the production of black discolor- ation [18]. The burning of fossil fuels has led to an increase in the concentrations of acid gases in the atmosphere and, of these, perhaps the most important is sulfur dioxide. When dissolved in water [19,20], sulphur dioxide forms sulphurous acid, which is oxidised to sulfuric acid; this, in turn, reacts with calcium carbonate to form calcium sulfate, the mineralized form of which is known as gypsum [21]. The formation of gypsum leads to the creation of cavities below the surface because of the migration of calcium ions to the surface [22]. Thus, when the soluble gypsum is washed away it takes with it some of the stone itself, initially causing loss of surface detail but eventually leading to a loss of structural integrity. On the surface of the stone, particulate matter from the atmosphere can combine with gypsum to leave unsightly black crusts [23,24]. Carbonaceous particles were thought to be the most significant element in black crusts but recent work has shown that they also contain a complex mixture of aliphatic and aromatic carboxylic acids and Corresponding author: May, E. ([email protected]). Available online 2 May 2006 Review TRENDS in Biotechnology Vol.24 No.6 June 2006 www.sciencedirect.com 0167-7799/$ - see front matter Q 2006 Elsevier Ltd. All rights reserved. doi:10.1016/j.tibtech.2006.04.005

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Page 1: Bioremediation of weathered-building stone surfaces

Bioremediation of weathered-buildingstone surfacesAlison Webster and Eric May

School of Biological Sciences, University of Portsmouth, Portsmouth, Hampshire, PO1 2DY, UK

Atmospheric pollution and weathering of stone surfaces

in urban historic buildings frequently results in disfig-

urement or damage by salt crust formation (often

gypsum), presenting opportunities for bioremediation

using microorganisms. Conventional techniques for the

removal of these salt crusts from stone have several

disadvantages: they can cause colour changes;

adversely affect the movement of salts within the

stone structure; or remove excessive amounts of the

original surface. Although microorganisms are com-

monly associated with detrimental effects to the

integrity of stone structures, there is growing evidence

that they can be used to treat this type of stone

deterioration in objects of historical and cultural

significance. In particular, the ability and potential of

different microorganisms to either remove sulfate crusts

or form sacrificial layers of calcite that consolidate

mineral surfaces have been demonstrated. Current

research suggests that bioremediation has the potential

to offer an additional technology to conservators work-

ing to restore stone surfaces in heritage buildings.

Introduction

The term bioremediation covers a range of processes thatuse microorganisms to return contaminated environmentsto their original condition. The use of microorganisms ortheir enzymes to deal with contaminated soils, oil spills orchemical waste are well-developed biotechnologies [1,2]but the application of bioremediation to ameliorate theeffects of stone deterioration is less well known. Deterio-ration of building stone begins from the moment it isquarried due to natural weathering processes [3]. Otherfactors, sometimes acting synergistically, includingcrystallization of soluble salts, pollution and biologicalcolonisation can accelerate natural deterioration [4–8].Whatever the cause of stone deterioration, many buildingsrequire remedial measures to stabilize the surface layerand prevent further loss from external sources. Thisreview offers an insight into how biotechnology researchhas addressed the needs of conservators working withbuilding stone and considers how far bacterially mediatedbioremediation can be used in practice.

Stone and soluble salts

Internal pressures created by crystallization, hydrationand thermal expansion of salts are a significant cause of

Corresponding author: May, E. ([email protected]).Available online 2 May 2006

www.sciencedirect.com 0167-7799/$ - see front matter Q 2006 Elsevier Ltd. All rights reserved

damage to stone [9–11]. Stone is hydrophilic, and will takeup water from the ground and adjoining stone. Solublesalts from the soil, the atmosphere and applications on thesurface can dissolve in this aqueous environment andmove through the pores. Highly soluble salts are usuallydeposited on the surface, and can be brushed off; however,less soluble salts might expand below surface level,ultimately causing the loss of the outer layers [12,13].Accumulation of sulfates, many derived from the oxidationof sulfur dioxide, is of particular concern. Those tech-niques that attempt to remove salts from heritage stoneartefacts by washing with water are either not practicableor accelerate degradation [14]. Nitrates, which canoriginate from the numerous oxides of nitrogen presentin the atmosphere (N2O, NO, N2O3, NO2, N2O5), can alsoaccumulate but because they have a high solubility theymigrate from the surface or are washed away by rain [15].Thus, unlike sulfates, nitrate accumulation is not asurface phenomenon and has not been the subject ofextensive study.

Black sulfate crusts

Many of the additional factors that accelerate deterio-ration of stone are still being definitively characterised,and much work has been carried out to highlight the roleof biological organisms in the blackening of stone [16,17].It is, however, the effects of anthropogenic sources ofpollution on building stone that are arguably the singlemost important factor in the production of black discolor-ation [18]. The burning of fossil fuels has led to an increasein the concentrations of acid gases in the atmosphere and,of these, perhaps the most important is sulfur dioxide.When dissolved in water [19,20], sulphur dioxide formssulphurous acid, which is oxidised to sulfuric acid; this, inturn, reacts with calcium carbonate to form calciumsulfate, the mineralized form of which is known as gypsum[21]. The formation of gypsum leads to the creation ofcavities below the surface because of the migration ofcalcium ions to the surface [22]. Thus, when the solublegypsum is washed away it takes with it some of the stoneitself, initially causing loss of surface detail but eventuallyleading to a loss of structural integrity.

On the surface of the stone, particulate matter from theatmosphere can combine with gypsum to leave unsightlyblack crusts [23,24]. Carbonaceous particles were thoughtto be the most significant element in black crusts butrecent work has shown that they also contain a complexmixture of aliphatic and aromatic carboxylic acids and

Review TRENDS in Biotechnology Vol.24 No.6 June 2006

. doi:10.1016/j.tibtech.2006.04.005

Page 2: Bioremediation of weathered-building stone surfaces

Review TRENDS in Biotechnology Vol.24 No.6 June 2006256

polycyclic aromatic hydrocarbons [25]. Sabbioni et al. [26]concluded that the oxalate found in these crusts probablyoriginated from a combination of microbial metabolismand protective treatments; formate and acetate anionsfound in the black crust were believed to be fromatmospheric pollutants. Furthermore, Schiavon et al.noted that the types of pollutants found in urban buildingstones are changing to reflect the atmospheric pollutantsof the time [27].

Figure 1. Examples of biorestoration. Left: Marble balcony support arm from a

building in Athens undergoing restoration showing black sulfated crusts. Right:

detail of a balcony scroll before (top) and after (bottom) application. Removal of

black crust is apparent after a single application of sulfate-reducing bacteria,

suspended in gel, after 48 hours. Further removal can be achieved with repeat

applications and can be tailored to the needs of the conservator.

Bioremediation of black sulfated crusts

Attempts to restore stone surfaces by removal of blackcrusts and salts through mechanical stone cleaning hasbegun to be called into question by some conservators asthe effects of past cleaning regimes become more evident[28]. It is clear that such cleaning can result in severaltypes of damage, some of which is immediately apparent(e.g. loss of surface), whereas in other cases the damagemight not become apparent for several years, for example,where a single dominant species of microorganismreplaces complex established microbiota removed in thecleaning process [29,30]. Indeed, some conservatorsbelieve certain surface deterioration should not beremoved. For example, patinas (surface layers developedover extended periods by biological and material-relatedfactors) removed from the Parthenon were associated withthe best-preserved surfaces and it was therefore rec-ommended that these should remain intact [31].

Thus, the removal of black crusts is problematic forconservators because conventional cleaning techniquescan potentially remove a portion of the underlying stone[32]. Skoulikidis and Beloyannis reported that gypsumcould be converted back to calcite using carbonate anionsin aqueous solution [33]. They found that the gypsumlayer was consolidated by the new calcite, which showedsimilar behaviour to the underlying marble. Although noother authors reported success using purely chemicalreactions, the use of microorganisms, a relatively recenttechnique, has been successful in removing sulfate fromblack gypsum crusts. Sulfate-reducing bacteria are able todissociate gypsum into Ca2C and SO4

2C ions, and the SO42C

ions are then reduced by the bacteria, whereas the Ca2C

ions react with carbon dioxide to form new calcite [32]:

6CaSO4 C4H2OC6CO2/6CaCO3 C4H2SC2SC11O2:

In 1970, Moncreiff and Hempel [34] described the use ofa ‘biological pack’ and the role of microorganisms in apoultice. The first successful application of the anaerobicsulfate reducer Desulfovibrio desulfuricans was reportedby Atlas et al. [35] and Gauri and Chowdhury [36].Heselmeyer et al. applied Desulfovibrio vulgaris togypsum crusts, which brought about the conversion tocalcite [14]. D. desulfuricans was again used by Gauri etal. to remove sulfates from the black crust on marble [37],and Kouzeli, also working with marble, reported goodresults compared with chemically based pastes [38].Saiz-Jimenez presented evidence that demonstratedmicroorganisms removed some of the most abundantcomponents of black crusts, such as gypsum and polycyclicaromatic hydrocarbons [39]; however, he did not consider

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that microorganisms would be of use in the bioremediationof buildings because of the practical difficulties imposed byfactors such as the size of the buildings and thetime required.

Ranalli et al. [40,15,41], unlike other researchers, havenot reported the deposition of calcite but, using D.desulfuricans and D. vulgaris, they demonstrated thesuccessful removal of black crusts from marble. A singleapplication of sulfate-reducing bacteria to an urbanmarble structure illustrates this ability (Figure 1).

Consolidation of stone surfaces

The desire to protect and consolidate stone surfaces has along history, with evidence for Roman use of pastes appliedto recently sculpted stone [42]. Traditional methods such asshelter coatings are made from slaked lime (calciumhydroxide), which combines with carbon dioxide in theatmosphere and hardens to form calcium carbonate in aprocess known as carbonation. The formation of calciumcarbonate crystals in the form of calcite is not an immediateprocess and can take up to 80 days when applied to wallpaintings [43]. External shelter coatings, such as limewash,last between 10 and 15 years but because they are subject tothe same deterioration processes as the underlying stone,they are eventually washed away and only providerelatively short-term protection [44]. Another method thatworks with the underlying stone is the generation of acalcium oxalate patina. Surface patinas can be formed,naturally, during time by oxidation of calcite with oxalicacid, and some authors consider a biological origin the mostprobable cause, for example, those observed at TarragonaCathedral, Spain [45]; other patinas might be anthropo-genic in origin, the result of protective treatments applied inthe past [46]. Cezar reported on work that has been carriedout in the laboratory to generate calcium oxalate layers,chemically, in a matter of hours rather than years [44].

Biomineralization

An alternative to the chemical generation of calciumcarbonate is the exploitation of a common phenomenon inliving organisms – biomineralization. This activity is

Page 3: Bioremediation of weathered-building stone surfaces

Figure 2. Crystal production under laboratory conditions. Left: crystal formation by

two different bacterial cultures growing on B4 solid medium [48]. Top: unidentified

bacteria isolated from a karstic stream. Bottom: Sphingomonas paucimobilis.

Crystal formation occurs within 10 hours of inoculation (magnification!400). Right

panel is a scanning electron micrograph showing a layer of calcified Pseudomonas

putida cells on Portland limestone, following the contours of the underlying

substrate. Magnification!5000, BarZ1 mm.

Review TRENDS in Biotechnology Vol.24 No.6 June 2006 257

widespread across many phyla, and molecular studies ofbone and shell suggest that there might be a commongenetic ancestry [47]. Biomineralization by bacteria(Figure 2) has provoked controversy, with some authorsbelieving that crystal production is a purely chemicalby-product, whereas others assert that microorganismsare actively involved in the process. Ehrlich [49] definedmicrobial mineral formation as either ‘active’, involvingenzymes or metabolic products, or ‘passive’, where evendead cells can produce minerals. Rivadeneyra et al.propose that the formation of calcium carbonate crystalsin the presence of Nesterenkonia halobia involves bothbiological and inorganic processes [50]. Given thatorganisms are in contact with the available precursorsrequired for crystal formation, it is perhaps unsurprisingthat new mineral material is produced on stone, and thishas, indeed, been observed in cyanobacteria followinginvasion of stone and lichens [51,52]. Urzi et al. isolatedmicroorganisms from stone surfaces and found that themajority precipitate CaCO3 in the form of calcite [53];furthermore, most of the common bacteria associated withbuilding stones can also induce precipitation in thelaboratory. Such examples demonstrate the complexinter-relationship between biological organisms andminerals, leading to elements of both destruction andconsolidation of the substratum.

Biomineralization of stone

Although biomineralization has been observed for manyyears, the potential for its use in stone consolidation hasonly been explored relatively recently. In 1990, Adolpheand others applied for a European patent for thegeneration of calcite through the action of bacteria. Orialet al. [54,55] also examined the formation of sacrificiallayers by bacteria and considered that it offered apromising avenue for treatment of historic buildings.Le Metayer-Levrel et al. used several different strains ofbiocalcifying bacteria to promote successful bacterialcarbonatogenesis on the surface of limestone buildings,statuary and monuments [56]. A variety of uses have beenfound for biocalcifying bacteria, as seen in the work ofBang et al. who used Bacillus pasteurii immobilised in

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polyurethane to fill cracks in concrete [57] and Ramachan-dran et al. who found that an increase in compressivestrength and stiffness can be achieved by combiningbacteria with sand in cracks [58]. Rodriguez-Navarroet al. also proposed the use of Myxococcus xanthus in stoneconservation and observed newly formed carbonate, whichcreated a cement that adhered strongly to the substratum:the bacteria induced carbonate cementation to a depth ofO500 mm and no plugging or blocking of pores wasobserved [59]. This newly formed carbonate was moreresistant to mechanical stress in the form of sonication,possibly because of the incorporation of organic moleculesproduced by bacterial metabolism into the crystals. Thisagrees with the work of Morse, who discovered thatbacterially induced calcite was less soluble that inorgani-cally produced calcite [60]. Castanier et al. reported thegeneration of bioconsolidating cement a few micrometresthick, with significant carbonate production occurringwithin 5–10 days [61]. Limited EPS (extracellularpolymeric substances) formation was observed whenusing buffered media M-3 but small quantities wereformed when growing the bacteria using unbuffered M-3,indicating the importance of the choice of pH andmedia components.

The application of microorganisms and a suitablegrowing media directly to stone surfaces has severalpotential problems, including the formation of EPS,blocking of pores and promotion of microbial growth onexcess media. To avoid some of these problems, Tiano et al.examined carbonatogenesis using organic matrix macro-molecules extracted from seashells, a procedure thatunfortunately proved complex and produced a low yieldof usable product [62]. Further work compared the effectsof Mytilus californianus with Ca(OH)2 and CaCl2 in termsof porosity, capillary water absorption and superficialcohesion on Pietra di Lecce and Pietra d’Angera (bioclasticlimestone): M. californianus gave the best results [63]. In1999, Tiano et al. examined methods of evaluatingbiologically mediated precipitation of calcite using poredimension, stone strength and colour [64]. Using Pietra diLecce with Micrococcus sp. and Bacillus subtilis, calcitewas identified using X-ray diffraction (XRD) and Fouriertransform–infrared spectroscopy (FT-IR) He found therehad been a decrease in stone porosity but considered thathalf of this was probably due to physical obstruction ofpores rather than newly precipitated calcite. A side effectof the treatment was the formation of stained patches dueto the growth of airborne contaminants exploiting thepresence of organic nutrients in the media used to growthe biocalcifying bacteria. Concerns regarding contami-nation of stone during induced biomineralization led toattempts to define the genetic mechanism as a possiblealternative to the direct application of live cells [65].

It is now understood that application of a physicalbarrier on the stone surface will hinder the movement ofsalts, which can then build up, leading initially tounsightly discolouration and ultimately to physicaldamage [66]. Even coatings that permit evaporation cancause problems of salt accumulation and crystallizationand, therefore, a protective coating must be sympatheticto the nature of the stone itself. The production of

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Review TRENDS in Biotechnology Vol.24 No.6 June 2006258

a calcium carbonate layer generated by bacteria (Figure 2)might offer a solution to this dilemma because the layerwould not block the natural pore structure, thus permit-ting free passage of soluble salts through the stone. Thelife of sacrificial layers generated by microorganismsis unclear but because of accelerated aging tests, LeMetayer-Levrel suggests that protection acquired bybiomineralization tends to increase with age by offeringlonger-term resistance to the weathering caused bygrowth of acid-producing microbial populations [55].

Current work and future prospects

Bioremediation is less harsh than the use of environmen-tally toxic chemicals or aggressive mechanical procedures,which are considered to be destructive methods. Crustremoval by microorganisms takes place in a natural waybecause these microorganisms have an active role in theenvironment, where they contribute to the closure ofbiogeochemical cycles or stabilization of dynamic equili-bria. However, research issues that have and will continueto be addressed are the effectiveness of these procedures,in addition to appropriate risk analyses, to provideconservators with confidence in the technology. Thus,technology transfer from the scientific community canonly be achieved by direct engagement of heritage end-users across national boundaries.

Recent research has explored the factors that influencebiological precipitation of calcium carbonate. Studies inSpain, France, USA, Italy and the UK have shown thatconsolidation of stones by biocalcifying bacteria can becontrolled by application of safe bacteria that pose littlethreat to the heritage object [50,56,57,65,67]. Acceptanceand satisfactory use of these technologies in conservationpractice requires adequate knowledge of the risk factorsto the heritage object in addition to conservators handlingthe active components. There have been concerns aboutthe long-term effects of the applied bacteria and theirnutrient media. Such issues are best addressed insystematic studies involving collaboration among scien-tists and end-users active in conservation practice.Practical application of bioremedial technologies hasrecently progressed, through the work of two projectsfunded by the European Community, which also usefullyillustrate the differences of approach that have beenadopted to evaluate the potential of bioremediation forconservation work: BIOREINFORCE (http://www.ub.es/rpat/bioreinforce/bioreinforce.htm); and BIOBRUSH(http://www.biobrush.org). The BIOREINFORCE partner-ship has successfully demonstrated that dead cells fromactive biocalcifying strains showed a much higher and/orfaster production of CaCO3 crystals than less activestrains. By elucidating the genetic expression of crystalformation in bacteria, the project aimed to produce bio-derived, low-cost, renewable macromolecules that willinduce calcification on stones without using livingbacterial cells [68]. The novel approach of the BIOBRUSHproject was to use live but low-hazard bacteria to linkthe mineralization processes (that remove salt crusts)to biomineralization (that can consolidate the stone).Bacteria were applied directly to stone surfaces usingtechniques that minimized the risk to the environment

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and conservators applying the treatment. Work at theUniversities of Milan and Molise, respectively, havedemonstrated that multiple short-term applications ofaerotolerant sulfate-reducing bacteria, within an appro-priate delivery system, can be successful in removingblack crusts from marble, both in the laboratory andin situ on buildings [69]. Results suggest that thebioremediation is at least as good as existing methods.Work with biocalcifying bacteria that were isolated fromthe environment has shown that deposition of a calcitelayer can be achieved without significant reduction inporosity or growth of contaminating microorganisms [67].This approach uses environmental isolates and controlledrelease of nutrients to minimize an adverse stimulation ofmicrobial growth.

Concluding remarks

The controlled use of microorganisms as agents ofbioremediation offers new approaches for conservators tohelp preserve, protect and restore building stone. Suchtechniques are intended to supplement rather thanreplace existing conservation technologies, which canoften be ineffective or toxic to end-users or the environ-ment. In the past 10 years, research has explored theconstraints of applying bacteria to stone to remove saltcrusts and consolidate the damaged pore structure.Suitable organisms are now known, and the environmen-tal factors have been identified; however, the risks posedby aesthetic and mineral changes are still beingaddressed. The challenge for the immediate future is totranslate a wide range of promising results into thepractical technology that has been achieved in other fieldsof biotechnology. Although the technology is still in itsinfancy and, therefore, not readily available, the results sofar indicate that it promises to offer a viable alternative tothose working to preserve our cultural heritage.

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69 Cappitelli, F. et al. Improved methodology for bioremoval of blackcrusts on historical stone artworks by use of sulphate–reducingbacteria. Appl. Environ. Microbiol. (in press)

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