bioinformatics applications & analysis using poplar gateway · 2013-08-22 · 7/29/13, 16:03...
TRANSCRIPT
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Nyalia Lui, Yuan Liu,
and Bhanu Rekepalli PhD
Bioinformatics Applications &
Analysis using PoPLAR Gateway
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Bioinformatics
Focus
Genomic Sequencing
DNA/RNA Strands
Protein Sequences
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Problems
Unorganized Data
Abundance of Data
Data Growth
Knowledge Discovery
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Explored Aspects of Bioinformatics
Genome Assembly
Sequence Analysis
Structures
Drug Discovery
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Applications
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• What are we
comparing?
BLAST vs
MUMMER
• What is coverage?
• BLAST vs MUMMER
• Contigs vs Nodes
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Our
Focus
Develop Resources
Analytical Tools
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PoPLAR Science Gateway
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The life of a running task
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Research Use
Provide easier access to
command line tools through
PoPLAR Gateway.
Educate Biologists on
accessing HPC
resources for large scale
data analysis.
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Future Work
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Thank
You
• Questions?
Acknowledgements