biochemical regulation of xsome formation and segregation

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THE BIOCHEMICAL REGULATION OF CHROMOSOME FORMATION AND SEGREGATION IN MITOSIS/MEIOSIS By: GOSIFE DONALD OKOYE GENETICS 301 APRIL 13TH 2015

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Page 1: Biochemical Regulation of Xsome Formation and Segregation

THE BIOCHEMICAL REGULATION OF CHROMOSOME FORMATION AND

SEGREGATION IN MITOSIS/MEIOSIS

By: GOSIFE DONALD OKOYEGENETICS 301

APRIL 13TH 2015

Page 2: Biochemical Regulation of Xsome Formation and Segregation

● Definition of Important Concepts○ Eukaryotic Chromosome○ Chromatin○ Chromatid

● Formation of the Eukaryotic Chromosome○ Biochemistry and regulation of nucleosome

formation○ Nucleosome packing (heterochromatin vs

euchromatin)○ Chromosome condensation

● Chromosomes during Mitosis and Meiosis○ Biochemical regulation of Mitosis and Meiosis

OVERVIEW

Page 3: Biochemical Regulation of Xsome Formation and Segregation

● EUKARYOTIC CHROMOSOMES: Structures resulting from the organization of nuclear DNA.

● CHROMATIN: A complex of macromolecules consisting of DNA, proteins and RNA. Basically resulting from packaging of DNA with histone proteins.

● CHROMATID: One copy of a duplicated chromosome usually joined to another via a centromere.

IMPORTANT CONCEPTS

Page 4: Biochemical Regulation of Xsome Formation and Segregation

NUCLEOSOMES: Histone proteins with DNA wrapped around them● DNA: Negatively charged● Histones: Positively charged

o Core (H2A, H2B, H3, H4)o Linker Histone (H1)

NUCLEOSOME FORMATION

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● H3-H4 dimers assemble● DNA associates● H2A/H2B associate with

tetramer● Histone Octamer forms● H1 for higher order

packing

ASSEMBLY

Page 6: Biochemical Regulation of Xsome Formation and Segregation

● Individual Core Histone Proteins Aggregate unspecificallyo Random coil conformation in low ionic conditions

● Interacting Core Histones adopt similar and more stable secondary conformations fostering further interactions

● Interactions with DNA are also favoredThe resulting interactions produce modifiable tails.● Histone Chaperones

STABILITY OF HISTONE PROTEINS

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● Binds Entry/Exit site of DNA to nucleosome

● Stabilizes Nucleosome

● Reduces nucleosomal mobility

● Guides higher order folding

● Accumulates in transcriptionally inactive regions

● Closely linked to DNA modification

H1 LINKER HISTONE

Page 9: Biochemical Regulation of Xsome Formation and Segregation

● Histone Acetyltransferases (HATs)

o Lysine Residues

● Histone Deacetylases (HDACs)

● Histone Methyltransferases (MTs)

o Lysine or Arginine residues

● Histone Demethylases (DMTs)

● Condensin: I and II

OTHER PROTEINS THAT REGULATE NUCLEOSOME PACKAGING

Page 10: Biochemical Regulation of Xsome Formation and Segregation

Chromatin Remodeling Complexes (CRC): ● establish a proper chromatin context for central

nuclear processes such as replication, DNA repair, and gene expression.

● move or evict nucleosomes to allow access to DNA for regulatory proteins that otherwise would be impeded by their binding to the nucleosomal DNA

● the mode of nucleosome movement and rearrangement is the topic of epic scientific debates

HIGHER ORDER PACKING

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● Folding continues guided by CRC and other proteins.

● The microenvironments determine the rate of folding and the concentration of linker histones

● The folding pattern closely mimics the double-helix nature of DNA but in a much tighter form.

HIGHER ORDER PACKING continued...

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REGULATION OF CHROMOSOMAL ACTIVITIES DURING MITOSIS/MEIOSIS

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● PROPHASE: Chromosome Condense

● METAPHASE: Chromatids attach to mitotic spindle

equator

● ANAPHASE: Sister Chromatids separate and migrate

● TELOPHASE: Chromosome uncoils

MITOSIS AND THE CHROMOSOME

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● Occurs during metaphase

● Determines if mitosis will

continue

MITOTIC CHECKPOINT

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● Cohesin● BUB1 (Budding Uninhibited by

Benzimidazole-1)● MAD1/MAD2/MAD3● cdc20 (Cell Division Cycle 20)● Anaphase-Promoting Complex● Securin-Separase Complex● Cyclin-Dependent Kinase-1● BUBR1 (Budding Uninhibited by

Benzimidazole Related-1)

THE METAPHASE-ANAPHASE TRANSITION IS HIGHLY REGULATED

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● cdc 20● cdc14 (Cell Division Cycle 14)

(phosphatase)● APC● Securin-Separase Complex● Separase● Cohesin

This represents the last regulated step of mitosis

THE METAPHASE -ANAPHASE TRANSITION IS HIGHLY REGULATED

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● Very similar to mitosis

● Meiotic Crossover

o Regulation of number and distribution by DPY-

28

o A subunit of condensin

REGULATION OF CHROMOSOMES IN MEIOSIS

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The Eukaryotic Cell is:● A master biochemist

● A master strategist........a grand chessmaster

IN SUMMARY

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● "Chromatin Structures" by Original uploader was Richard Wheeler at en.wikipedia Later version(s) were uploaded by Seans Potato Business at en.wikipedia. - Transferred from en.wikipedia; Transfer was stated to be made by User:sevela.p.. Licensed under CC BY-SA 3.0 via Wikimedia Commons - http://commons.wikimedia.org/wiki/File:Chromatin_Structures.png#/media/File:Chromatin_Structures.png

● K.E.Van Holde. Chromatin. Springer, Heidelberg, 1989.● B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts, & P. Walter. MOlecular Biology of the Cell. Garland Science. 5th Edition. New York,

2008.● A. Hamiche, P. Schultz, V. Ramakrishnan, P. Oudet, A. Prunell. Linker histone dependent DNA structure in linear mononucleosomes. J.

Mol. Biol. 257 (1996): 30–42.

● R. T. Simpson. Structure of the chromatosome, a chromatin particle containing 160 base pairs of DNA and all the histones. Biochemistry 17 (1978): 5524–5531.

● F. Thoma, T. Koller, A. Klug. Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin. J. Cell Biol. 83 (1979): 403–427.

● S. Pennings, G. Meersseman, E. M. Bradbury. Linker histones H1 and H5 prevent the mobility of positioned nucleosomes. Proc. Natl. Acad. Sci. USA91 (1994): 10275–10279.

● Y. Fan, T. Nikitina, J. Zhao, T. J. Fleury, R. Bhattacharyya, E. E. Bouhassira, A. Stein, C. L. Woodcock, A. I. Skoultchi. Histone H1 depletion in mammals alters global chromatin structure but causes specific changes in gene regulation. Cell 123 (2005): 1199–1212.

● A. Calestagne-Morelli, J. Ausio. Long-range histone acetylation: biological significance, structural implications, and mechanisms. Biochem. Cell Biol. 84 (2006): 518–527.

● R. E. Sobel, R. G. Cook, C. A. Perry, A. T. Annunziato, C. D. Allis. Conservation of deposition-related acetylation sites in newly synthesized histones H3 and H4. Proc. Natl. Acad. Sci. USA 92 (1995): 1237–1241.

● Mets, D. G., & Meyer, B. J. (2009). Condensins Regulate Meiotic DNA Break Distribution, thus Crossover Frequency, by Controlling Chromosome Structure.Cell, 139(1), 73–86. doi:10.1016/j.cell.2009.07.035

REFERENCES

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● A. J. Bannister, T. Kouzarides. Reversing histone methylation. Nature 436 (2005): 1103–1106.

● T. J. Richmond, M. A. Searles, R. T. Simpson. Crystals of a nucleosome core particle containing defined sequence DNA. J. Mol. Biol. 199 (1988): 161–170.

● ] Y. Ishimi, J. Hirosumi, W. Sato, K. Sugasawa, S. Yokota, F. Hanaoka, M. Yamada. Purification and initial characterization of a protein which facilitates assembly of nucleosome-like structure from mammalian cells. Eur. J. Biochem. 142 (1984): 431–439.

● J. K. Tyler, C. R. Adams, S. R. Chen, R. Kobayashi, R. T. Kamakaka, J. T. Kadonaga. The RCAF complex mediates chromatin assembly during DNA replication and repair. Nature 402 (1999): 555–560.

● Holt, L. J., Krutchinsky, A. N., & Morgan, D. O. (2008). Positive feedback sharpens the anaphase switch. Nature, 454(7202), 353–357. doi:10.1038/nature07050

● Bolanos-Garcia, V. M., & Blundell, T. L. (2011). BUB1 and BUBR1: multifaceted kinases of the cell cycle. Trends in Biochemical Sciences, 36(3), 141–150. doi:10.1016/j.tibs.2010.08.004

● Bolanos-Garcia, V. M., Lischetti, T., Matak-Vinković, D., Cota, E., Simpson, P. J., Chirgadze, D. Y., … Blundell, T. L. (2011). Structure of a Blinkin-BUBR1 Complex Reveals an Interaction Crucial for Kinetochore-Mitotic Checkpoint Regulation via an Unanticipated Binding Site. Structure(London, England:1993),19(11-2), 1691–1700. doi:10.1016/j.str.2011.09.017

● Stegmeier F, Amon A (2004). "Closing mitosis: the functions of the Cdc14 phosphatase and its regulation". Annu. Rev. Genet. 38: 203–32.doi:10.1146/annurev.genet.38.072902.093051. PMID 15568976

● H.M Berman, D. Goodsell, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N Shindyalov, P.E. Bourne. Nucl. Acids Res. (2000) 28 (1):235-242. doi: 10.1093/nar/28.1.235

REFERENCES CONTINUED