binding analysis of the estrogen receptor to its specific dna target

7
(CANCER RESEARCH 51. J4Ãoe5-Õ4IO. Jul> I. 1991] Binding Analysis of the Estrogen Receptor to Its Specific DNA Target Site in Human Breast Cancer1 Brian I). Foster, Douglas R. Cavener, and Fritz F. Pari' Ih'purtiHi'itin iif Molecular HioloKy fH. I). /•'., I). K. (.'./ anil I'utlwloxy ¡I'./'. /'./. I 'underbill I 'nirersity. .\uslirille. Ti'iiiiewe ÃOE72ÃOE2 ABSTRACT The estrogen receptor (KR) is a nuclear protein with a hormone- and a DNA-binding domain. \\e examined the DNA binding of KR in MCK- 7 cells and 79 primary breast cancers by gel mobility shift assay using as a probe the estrogen response element (KRK). The mobility shift assay showed saturable, specific binding of IK to KRK in crude, high molar extracts containing 2:4 mg/ml protein. Nonspecific binding was reduced by increasing concentrations of poly(deoxyinosidylate • dcoxycytidylate) and shortening of the KRK probe from 35 to 15 base pairs. In the presence of Mg:+ the KR-KRK complex formation was hormone depend ent at 22°Cbut not at 37°C.In the absence of Mg;+ estradiol was not necessary for KR-KRK complex formation. Correlation of the mobility shift assay with the hormone-binding (K;) assay showed agreement in 55 of the 79 tumors. Both assays were positive (E;+/KRK+) in 35 cases and both were negative (K;—/KRK—) in 20 cases. In 11 tumors the hormone- binding assay was positive and the mobility shift assay negative (I + KRK—),suggesting an alteration of the DNA-binding domain. In 13 cancers the hormone-binding assay was negative and the mobility shift assay positive (Kj-/ERK+) suggesting an alteration of the hormone- binding domain. By performing both hormone- and DNA-binding assays of KR and the hormone-binding assay of progesterone receptor (PR), we found the following subgroups of breast cancer: (a) K2+/KRE+/PR+, (b) EZ+/KRE+/PR-, <«•) K;+/ERE-/PR+, (</)E2+/ERE-/PR-, (e)E2-/ ERK+/PR+, (/) EJ-/KRK+/PR-, (g) EZ-/ERE-/PR-. The simulta neous determination of 17/3-estradiol and KRK binding may provide a better definition of the KR status of individual tumors and prove useful in refining endocrine therapy of patients with breast cancer. INTRODUCTION The ER' ¡s a nuclear protein with a hormone-binding domain in the COOH-terminal half and a DNA-binding domain in the midportion of the molecule (1). Both hormone and DNA bind ing appear necessary to mediate the main biological action of estrogens, i.e.. the transcriptional regulation of estrogen-de pendent genes (2-4). Until recently, only the hormone-binding function of the ER could be measured accurately, while the DNA-binding function in breast tumor specimens was evaluated indirectly by determining PR, an estrogen-induced gene product (5). Despite this limitation, the hormone-binding assay of ER has proved clinically important in the management of patients with breast cancer (6, 7). The determination of ER in cytosol extracts of tumor homogenates is useful in selecting breast cancer patients who may benefit from hormonal therapy. If ER is not detected by hormone-binding assay (E2—), the chance of seeing an objective response to endocrine therapy is only \0cc or less. In contrast, if the tumor contains ER by hormone- binding assay (E:+). the likelihood of a response to endocrine Received 10/3/89: accepted 4/23/91. The costs of publication ot this article were defrayed in part h> the payment of page charges. This article must therefore he hereby marked iitfn'rti\t'nii'nl in accordance with 18 I'.S.C. Section 1734 solely to indicate this fact. 1This work was supported b\ American Cancer Society Institutional Research Grant 1N-25-30 (to B. D. F.) and. in part. by American Cancer Society Grant PDT-371 (toF. F. P.). 2To whom requests for reprints should be addressed, at Department of Pathology. Vanderbilt I nixersity. Nashville. TN 37232. 'The ahbre\iations used are: ER. estrogen receptor: KRK. estrogen response element; E;. estradiol: PR. progesterone receptor: polyfdl dO. poly(deo\\- inosidylate deoxycytidylate): FP. free probe. therapy is about 60'V (8). The ability to predict the therapeutic response is further increased by the simultaneous determination of PR. Tumors that contain both ER and PR respond to endocrine therapy in almost 80% of cases, while cancers con taining ER but not PR respond in only 40cr (9). The molecular mechanisms responsible for the E:+/PR- phenotype are unknown. In principle, one can invoke at least two possibilities: (a) defective PR gene expression due to ab normalities at the gene. mRNA. or protein level or (h) failure of ER to bind DNA, blocking expression of the estrogen- dependent PR gene. The recent definition of specific DNA sequences bound by ER enables the testing of the second hypothesis. The DNA-binding domain of the ER recognizes specific 5' regulatory sequences of estrogen-inducible target genes, such as the vitellogenin Al and A2 genes of Xenopus laevis and the chicken vitellogenin II gene (10, 11). Analysis of the 5'-flanking region of the vitellogenin gene family has re vealed a conserved 13 base pair palindromic sequence with 5- base pair stems separated by a 3-base pair spacer (12, 13). This consensus sequence, GGTCANNNTGACC, has been termed ERE since single copies are capable of conferring estrogen inducibility on reporter genes (14-16). Recently, specific bind ing of ER to the ERE has been shown directly by the gel mobility shift assay (17). In this paper we demonstrate that binding of ER extracted from breast cancer biopsies to ERE can be detected by gel mobility shift assay. To develop the assay as a routine procedure for DNA-binding analysis of ER in breast cancers we examined the effect of several factors on ER-ERE complex formation, such as the length of the ERE probe, the presence of estradiol, and the concentration of poly(dl-dC). The mobility shift assay can be performed in parallel to the hormone-binding assay- allowing functional analysis of both the hormone- and DNA- binding domains of the ER. Based on the estrogen-, ERE-, and progestin-binding activities, human breast cancers may be sub divided into several distinct phenotypic categories. MATERIALS AND METHODS Tissues. Biopsies from 79 primary breast cancers were examined in the surgical pathology laboratory. After the diagnosis of cancer was established from fro/en sections of the tumor, a portion of the biopsy was fixed in formalin for routine histológica!examination. The remain der of the tissue was stripped of adherent fat, stored at -70°C, and used for the biochemical assays of ER and PR within 1 week. The frozen tissue was pulverized and the resulting fine powder used for all biochemical analyses. Biochemical Assays of Steroid Hormone Binding. Approximately 400 mg of tissue powder was added to ice-cold cytosol buffer (0.01 M Tris, pH 7.4-1 mM EDTA-10 imi monothioglycerol-10^ glycerol). Six- point binding assays of 17)i-estradiol and progesterone (R5020, pro- megestone: New England Nuclear. Boston. MA) were performed using dextran-coated charcoal to absorb free hormone, as previously reported (18). Tumors with ER <3 fmol/mg cytosol protein usually show no response to endocrine therapy: they were classified as E;-. Similarly, tumors containing PR <3 fmol/mg were classified as PR-. Gel Mobility Shift Assay. The ERE of the Xenopus viteliogenin A2 gene was chosen to investigate the DNA binding of ER (12. 15). Both 3405 on April 13, 2018. © 1991 American Association for Cancer Research. cancerres.aacrjournals.org Downloaded from

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Page 1: Binding Analysis of the Estrogen Receptor to Its Specific DNA Target

(CANCER RESEARCH 51. J4Ü5-Õ4IO.Jul> I. 1991]

Binding Analysis of the Estrogen Receptor to Its Specific DNA Target Site inHuman Breast Cancer1

Brian I). Foster, Douglas R. Cavener, and Fritz F. Pari'Ih'purtiHi'itin iif Molecular HioloKy fH. I). /•'.,I). K. (.'./ anil I'utlwloxy ¡I'./'. /'./. I 'underbill I 'nirersity. .\uslirille. Ti'iiiiewe Ì72Ì2

ABSTRACT

The estrogen receptor (KR) is a nuclear protein with a hormone- anda DNA-binding domain. \\e examined the DNA binding of KR in MCK-7 cells and 79 primary breast cancers by gel mobility shift assay usingas a probe the estrogen response element (KRK). The mobility shift assayshowed saturable, specific binding of IK to KRK in crude, high molarextracts containing 2:4 mg/ml protein. Nonspecific binding was reducedby increasing concentrations of poly(deoxyinosidylate •dcoxycytidylate)and shortening of the KRK probe from 35 to 15 base pairs. In thepresence of Mg:+ the KR-KRK complex formation was hormone dependent at 22°Cbut not at 37°C.In the absence of Mg;+ estradiol was not

necessary for KR-KRK complex formation. Correlation of the mobilityshift assay with the hormone-binding (K;) assay showed agreement in 55of the 79 tumors. Both assays were positive (E;+/KRK+) in 35 cases andboth were negative (K;—/KRK—)in 20 cases. In 11 tumors the hormone-binding assay was positive and the mobility shift assay negative (I +KRK—),suggesting an alteration of the DNA-binding domain. In 13cancers the hormone-binding assay was negative and the mobility shiftassay positive (Kj-/ERK+) suggesting an alteration of the hormone-binding domain. By performing both hormone- and DNA-binding assaysof KR and the hormone-binding assay of progesterone receptor (PR), wefound the following subgroups of breast cancer: (a) K2+/KRE+/PR+, (b)EZ+/KRE+/PR-,<«•)K;+/ERE-/PR+,(</)E2+/ERE-/PR-,(e)E2-/ERK+/PR+, (/) EJ-/KRK+/PR-, (g) EZ-/ERE-/PR-. The simultaneous determination of 17/3-estradiol and KRK binding may provide abetter definition of the KR status of individual tumors and prove usefulin refining endocrine therapy of patients with breast cancer.

INTRODUCTION

The ER' ¡sa nuclear protein with a hormone-binding domain

in the COOH-terminal half and a DNA-binding domain in themidportion of the molecule (1). Both hormone and DNA binding appear necessary to mediate the main biological action ofestrogens, i.e.. the transcriptional regulation of estrogen-dependent genes (2-4). Until recently, only the hormone-bindingfunction of the ER could be measured accurately, while theDNA-binding function in breast tumor specimens was evaluatedindirectly by determining PR, an estrogen-induced gene product(5). Despite this limitation, the hormone-binding assay of ERhas proved clinically important in the management of patientswith breast cancer (6, 7). The determination of ER in cytosolextracts of tumor homogenates is useful in selecting breastcancer patients who may benefit from hormonal therapy. If ERis not detected by hormone-binding assay (E2—),the chance ofseeing an objective response to endocrine therapy is only \0ccor less. In contrast, if the tumor contains ER by hormone-binding assay (E:+). the likelihood of a response to endocrine

Received 10/3/89: accepted 4/23/91.The costs of publication ot this article were defrayed in part h> the payment

of page charges. This article must therefore he hereby marked iitfn'rti\t'nii'nl inaccordance with 18 I'.S.C. Section 1734 solely to indicate this fact.

1This work was supported b\ American Cancer Society Institutional ResearchGrant 1N-25-30 (to B. D. F.) and. in part. by American Cancer Society GrantPDT-371 (toF. F. P.).

2To whom requests for reprints should be addressed, at Department ofPathology. Vanderbilt I nixersity. Nashville. TN 37232.

'The ahbre\iations used are: ER. estrogen receptor: KRK. estrogen responseelement; E;. estradiol: PR. progesterone receptor: polyfdl dO. poly(deo\\-inosidylate deoxycytidylate): FP. free probe.

therapy is about 60'V (8). The ability to predict the therapeutic

response is further increased by the simultaneous determinationof PR. Tumors that contain both ER and PR respond toendocrine therapy in almost 80% of cases, while cancers containing ER but not PR respond in only 40cr (9).

The molecular mechanisms responsible for the E:+/PR-

phenotype are unknown. In principle, one can invoke at leasttwo possibilities: (a) defective PR gene expression due to abnormalities at the gene. mRNA. or protein level or (h) failureof ER to bind DNA, blocking expression of the estrogen-dependent PR gene. The recent definition of specific DNAsequences bound by ER enables the testing of the secondhypothesis. The DNA-binding domain of the ER recognizesspecific 5' regulatory sequences of estrogen-inducible target

genes, such as the vitellogenin Al and A2 genes of Xenopuslaevis and the chicken vitellogenin II gene (10, 11). Analysis ofthe 5'-flanking region of the vitellogenin gene family has re

vealed a conserved 13 base pair palindromic sequence with 5-base pair stems separated by a 3-base pair spacer (12, 13). Thisconsensus sequence, GGTCANNNTGACC, has been termedERE since single copies are capable of conferring estrogeninducibility on reporter genes (14-16). Recently, specific binding of ER to the ERE has been shown directly by the gelmobility shift assay (17).

In this paper we demonstrate that binding of ER extractedfrom breast cancer biopsies to ERE can be detected by gelmobility shift assay. To develop the assay as a routine procedurefor DNA-binding analysis of ER in breast cancers we examinedthe effect of several factors on ER-ERE complex formation,such as the length of the ERE probe, the presence of estradiol,and the concentration of poly(dl-dC). The mobility shift assaycan be performed in parallel to the hormone-binding assay-allowing functional analysis of both the hormone- and DNA-binding domains of the ER. Based on the estrogen-, ERE-, andprogestin-binding activities, human breast cancers may be subdivided into several distinct phenotypic categories.

MATERIALS AND METHODS

Tissues. Biopsies from 79 primary breast cancers were examined inthe surgical pathology laboratory. After the diagnosis of cancer wasestablished from fro/en sections of the tumor, a portion of the biopsywas fixed in formalin for routine histológica!examination. The remainder of the tissue was stripped of adherent fat, stored at -70°C, and

used for the biochemical assays of ER and PR within 1 week. Thefrozen tissue was pulverized and the resulting fine powder used for allbiochemical analyses.

Biochemical Assays of Steroid Hormone Binding. Approximately 400mg of tissue powder was added to ice-cold cytosol buffer (0.01 M Tris,pH 7.4-1 mM EDTA-10 imi monothioglycerol-10^ glycerol). Six-point binding assays of 17)i-estradiol and progesterone (R5020, pro-megestone: New England Nuclear. Boston. MA) were performed usingdextran-coated charcoal to absorb free hormone, as previously reported(18). Tumors with ER <3 fmol/mg cytosol protein usually show noresponse to endocrine therapy: they were classified as E;-. Similarly,tumors containing PR <3 fmol/mg were classified as PR-.

Gel Mobility Shift Assay. The ERE of the Xenopus viteliogenin A2gene was chosen to investigate the DNA binding of ER (12. 15). Both

3405

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Page 2: Binding Analysis of the Estrogen Receptor to Its Specific DNA Target

BINDIM;oíKSTROGENRixiTÕORAN»i>\\ IN BRKASTCANCER

B

01390

u— -

in in

< S

< NI

< NU

< FP

Fig. l. Bindini; specificity of the KRK oligomicleolidc to ER in crude. highnidliir extracts frinii M('!•'-?cells ;ind hreasl cancer biopsy. .1, coinpclilion binding.iii.iK'.i ii) which extract from MCF-7 cells was incubaled with increasing molarratios of unlabelcil/'''!' labeled I Kl in the binding reactii>n as indicated above

each lane. The intensi)} of the KR-KRK complex S decreased with increasingruliosof unlubeled/labeled I RE. while ibe iniensii} of nonspecific complexes (Nland Nil) was unaffected. //. limitimi of nonspecific binding complexes Nl andNil in hreasl cancer extract by increasing concentralions of polyldl dC) in <jgasindicated <//><»reach ¡tint:Noie the decrease in intensity of nonspecific complexesNl and Nil with higher leu-Is of polyldl-d(').

glycerol. and 0.5, 1.5. or 4.5 jug poly(dl-dC)) and placed on ice. After20 min. 250-500 fmol of the "P-labcled double-stranded ERE oligomerwas added and the reaction mixture incubated for 20 min at 22°C.The

protein-ERE complexes were separated by electrophoresis through 6%acrylamidc (38:2. acrylamideibis) gels using a buffer consisting of 100HIMTris-100 mM boric acid-2 imi EDTA, pH 8.0 (17. 22). The gelswere vacuum dried and autoradiographed. The ER-containing humanbreast cancer cell line MCF-7 was used as a positive control for EREbinding.

RESULTS

The presence of ER and PR in 79 breast cancers was detectedby standard hormone-binding assays. The DNA-binding function of ER was analyzed by gel mobility shift assay using anERE probe. Initial experiments with cytosolic, low molar saltextracts, which were used for routine hormone-binding assays,gave variable results, consistent with the variable amount oftransformed, DNA-binding ER extracted under these conditions. Inconsistent results were also obtained with extractscontaining <4 mg/ml protein. Therefore, we routinely obtained0.4 M KC1 extracts and adjusted the protein concentration to4.0 mg/ml. Tumor extracts that did not form an ER-EREcomplex at 4 mg/ml remained ERE—,even at 10 mg/ml pro

tein. To develop the mobility shift assay as a routine procedurefor DNA-binding analysis of ER in breast cancers, we examinedthe effect of several other factors on ER-ERE binding. MCF-7cells were used as positive controls for most of these experiments since the amount of tissue from individual tumors wasinsufficient for multiple analyses. ERE was hound by ER incrude, high molar salt extracts of E:+/PR+ cancers and theKR-KRK complex comigrated as a single, prominent band withthat obtained from MCK-7 whole cell extract (Figs. 1 and 2).To verify the presence of ER, we incubated aliquots of theextract with two anti-FR monoclonal antibodies, 11222 andD547, for 2 and 18 h. Both antibodies greatly decreased theintensity of the retained protein-DNA band demonstrating thepresence of ER in the complex (Fig. 3). The addition of unre-

strands corresponding to the ERE upstream of the A2 gene weresynthesized as 15 (S'-AGGTCACAGTGACCT-.V) and 35 (5'-GTCCAAAGTCAGGTCACAGTGACCTGATCAAAGTT-3') base

oligonucleotides using an Applied Biosystems (San Jose, ÇA)DNAsynthesizer. F.quimolar amounts of the two strands were annealed inbuffer (10 mxi Iris-1 mxi EDTA, pH 8.0) by heating to 95°Cand

cooling to room temperature during a period of 1 h. The double-stranded ERE oligomer was end labeled using [7-12P]ATP and T4

polynucleotide kinase (19).Approximately 200 nig of fresh tissue powder was added to 400 ¡i\

of ice-cold extraction buffer (0.4 M KC1-10 mM Tris, pH 7.4-2 mMleupeptin-1 mM EDTA-10 m.xi monothioglycerol-10rr glycerol). Theresulting homogenate was centrifuged for l min at 4°Cin an Eppendorf

microfuge at 14,000 rpm. The supernatant was transferred to 175-^1Beckman Airfuge tubes which were placed in an 18" fixed angle micro-

rotor and centrifuged in the Airfuge (Beckman Instruments. Palo Alto.CA) at 132,000 x g for 10 min at 4°C(20). The thin lipid layer on the

surface of the supernatant was removed by aspiration. A 50-n\ aliquotof the clear supernatant was used for protein determination by theCoomassie blue method to adjust the protein concentration to 4.0 mg/ml (21). Aliquots (10 ¿il)of the remaining supernatant were added tothree 0.5-ml Eppendorf tubes containing 30 nl incubation buffer (100mM Tris, pH 8.0-2 mM leupeptin-1 mM EDTA-10'8 M E2-10% (v/v)

-

Fig. 2. Batch analysis of ERE-binding activity by mobility shift assay of extractsfrom six breast cancers. Each extract was incubaled with increasing concentralionsof polyldl -dO (a. 0.5 »ig:b, 1.5 ßg;i: 4.5 >jg)to reduce nonspecific binding (NIand Nil). The lumors were scored according to the absence (ERI-!—:tumors 1-3)or presence (ERE+; tumors 4-6) of specific ER-ERE complex S. The hormone-binding status for E; and PR of each tumor is indicated above the correspondingtriplicate mobility shift assays. Far right lam; an MCF-7 extract was included asa positive control.

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Page 3: Binding Analysis of the Estrogen Receptor to Its Specific DNA Target

BINDING OF ESTROGEN RECEPTOR AND DNA IN BREAST CANCER

0 H O C O

B

O H D C O

.

the reaction mixture with and without estradiol in the presenceof 5 mM Mg:+ at 22°Cshowed a marked reduction in band

intensity in the absence of hormone (Fig. 5). However, thecomplex formation was independent of the presence of hormone in the absence of Mg:+. The incubation temperature alsoaffected the ER-ERE complex formation. Elevation of thetemperature to 37°Cnegated the hormone dependence of thecomplex in the presence of Mg:+ (Fig. 5). For the evaluation of

breast cancer samples the incubation was routinely carried outat 22°C,but Mg:+ was omitted from the reaction in order to

assay DNA-binding activity independently of hormonerequirements.

To rule out the possibility that the lack of ER-ERE complexformation resulted from proteolytic degradation of ER, weadded leupeptin as a protease inhibitor to the extraction buffer.ERE- tumors, in general, and an E:+/ERE— tumor, in particular, remained ERE—in spite of leupeptin addition (data not

shown). Comparison of freshly prepared extract with storedextract showed that storage for 1 month at -70°Cdid not affect

ER-ERE complex formation or mobility. Similarly, intact tissuespecimens could be stored for four weeks at —70°Cwithout loss

of activity. However, tissue homogenized to powder could notbe stored more than three days without loss of ERE-bindingactivity of subsequently prepared extract (data not shown).Thus, frozen tissue specimens or extract, but not tissue powder,can be stored for batch analysis of ER DNA binding.

Altered mobility of the ER-ERE complex was observed inone E:+/PR+ and one E:+/PR- tumor. The complex migrated

BFig. 3. Ami-ER monoclonal antibodies reduce ER-ERE complex S in crude,

high molar extract. Gel mobility shift assay of MCF-7 extract which was incubatedfor 2 h (A) and 18 h (lì)in the absence (lane O) or presence of monoclonalantibodies (20 fig) directed against ER (lane H, H222: lane I). 1)547) or in thepresence of an unrelated control antibody (C). The band intensity of complex Sin lanca H and I) is specifically reduced when compared to lanes O and C' for both

incubation periods, demonstrating the presence of ER in the complex. Eachincubation reaction contained 1.5 ng poly(dl-dC). The free probe has run off thebottom of the 4'"<polyacrylamide gel used in this experiment.

lated antibody had no apparent effect on the ER-ERE complexformation. To further characterize the ER-ERE complex, weperformed mobility shift competition assays with unlabeledsynthetic oligonucleotides as competitor DNA. Increasing molar ratios of unlabeled/labeled ERE resulted in decreasing bandintensity of ER-ERE complexes, providing evidence for limitedDNA-binding capacity of ER (Fig. ÃŒA).Addition of poly(dl-dC) did not affect the intensity of the ER-ERE complex butreduced the nonspecific DNA binding of the crude extracts.However, the amount of poly(dl-dC) required for suppressionof nonspecific binding varied between tumors. Therefore, weroutinely used three levels of poly(dl-dC), 0.5, 1.5, and 4.5 ng,to diminish nonspecific binding, to ensure optimal autoradi-ographic intensity of the ER-ERE complex, and to provide anadded measure of replication (Figs. 1 and 2). Nonspecific DNAbinding was also affected by the length of the DNA probe. Acomparison of the 15-base pair ERE with the 35-base pairprobe containing the ERE in its center showed that the longerprobe was subject to greater nonspecific interactions resultingin higher background (Fig. 4). Therefore, we routinely used the15-base pair ERE probe to examine the DNA-binding functionof ER in breast cancers.

The effect of estradiol on ER-ERE complex formation wasexamined in the presence and absence of Mg:+. Incubation of

3407

35 bp 15 bp 35 bp 15 bp

<FP

(35)

<FP

(1 5)

Fig. 4. Effect of ERE probe length on mobility shift assay. Composite photograph of mobility shift assays of MCF-7 (A) and tumor (/?} extracts incubatedwith 35-base pair (bp) or 15-base pair ERE probes as indicated. The same amountof ERE was labeled and used in the binding reaction. As indicated by the intensityof the I'P, the specific activity of the 15-basc pair probe was at least four-fold

higher than that of the 35-base pair probe. Note also the decrease in nonspecificbackground with the shorter probe. Nonspecific competitor was added as in Fig.

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Page 4: Binding Analysis of the Estrogen Receptor to Its Specific DNA Target

BINDING OF ESTROGEN RECEPTOR AND DNA IN BREAST CANCER

BMg

E2

bind specifically to ERE and confer estrogen inducibility onreporter genes transfected into the ER-positive breast cancercell line MCF-7 (13, 14). We used MCF-7 cells as positivecontrols and demonstrated that the ER-ERE complex derivedfrom whole cell extracts comigrated with complex obtainedfrom extracts of E2+/PR+ breast cancer tissues (Figs. 1 and 2).

"• ^U M3 UJ

ocCL"+

MUJ

•fOCa"+NLU

OC OCo. a.M ÑHI UJ

< S'

<s

< NI

< FP

Fig. 5. Effects of estradiol and Mg2* on ER-ERE complex formation. Following the binding assay at 22°Cin the presence or absence of hormone (E2). MgCl,was added to 5 niM as indicated and the incubation continued for 20 min at 22°C(A) or 37°C(A) prior to mobility shift assay. Hormone-dependent binding isevident only in the presence of Mg!* at the lower temperature.

slower than the ER-ERE complex from MCF-7 cells, suggesting a larger Stokes' radius (Fig. 6). Because of the limited

availability of tissue, the presence of ER within the retainedbands could not be confirmed.

Based on the results of the gel mobility shift and estrogen-binding assays, the tumors were divided into four categories asshown in Fig. 7. The results of the estrogen- and ERE-bindingassays agreed in 55 of 79 tumors, i.e., both assays were positive(E:+/ERE+) in 35 cases, and both were negative (E;-/ERE—)in 20 cases. In 11 tumors, the estrogen-binding assay waspositive and the mobility shift assay negative (E2-(-/ERE—).The

lack of complex formation was not related to the amount ofER because the receptor concentrations in the extracts, determined by hormone binding, were of the same order of magnitude as in E:+/ERE-I- tumors. Thirteen cancers failed to bindestradiol but retained the ability to bind ERE (E:-/ERE+).When the results of the PR-binding assay were also included,the tumors could be classified into seven of eight theoretically-

possible categories (Fig. 7).

DISCUSSION

We analyzed the DNA-binding function of ER in humanbreast cancer biopsies by gel mobility shift assay using a double-stranded 15-base pair probe containing the ERE core palindrome. The DNA-binding domain of ER has been shown to

< Nil

< FP

Fig. 6. Mobility shift assays of breast cancer extracts with different phenotypes.The hormone-binding activity of each tumor is indicated. The tumor analy/ed inlane .?showed a slower migrating complex S* relative to the ER-ERE complex Sof the MCF-7 control in lane I. Lanes 3-6. examples of E;+/ERE-/PR+, E2+/ERE+/PR-K EI-/ERE+/PR-. and EJ-/ERE-/PR- tumors, respectively. NIand Nil. nonspecific complexes.

N=79

E2+/ERE+

35(44)

E2+/ERE-

11(14)

E2-/ERE +

13(17)

E2-/ERE-

20(25)

E2+/ERE+/PR + 23(29)

E2+/ERE + /PR- 12(16)

E2+/ERE-/PR + 1(1)

E2 + /ERE-/PR- 10(13)

E2-/ERE+/PR + 2(3)

E2-/EREWPR- 11(1")

E2-/ERE-/PR+ 0(0)

E2-/ERE-/PR- 20(25)

Fig. 7. Receptor phenotype classification of breast cancers. The number oftumors observed in each category is indicated: numbers in parenthèses,corresponding percentages.

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BINDING OF ESTROGEN RECEPTOR AND DMA IN BREAST CANCER

Anti-ER monoclonal antibodies were able to specifically blockthe ER-ERE complex formation, demonstrating the presenceof ER in the complex (Fig. 3). The presence of ER in theretained band was further confirmed by the effect of estradicion the complex formation (Fig. 5). In the presence of Mg2+ the

ER-ERE binding was hormone dependent and the band intensity markedly reduced in the absence of estradiol. The involvement of Mg:+ in hormone-dependent ER-ERE complex for

mation was first shown with human ER overexpressed by abaculovirus expression system in insect cells (23). The role ofMg:+ in complex formation appears to be indirect since ER-

ERE binding also occurs in its absence. Moreover, in theabsence of Mg:+ the ER-ERE complex formation is hormoneindependent (Fig. 5). Since Mg2+ was not present in our assay,

we tested the functional integrity of the DNA-binding domainirrespective of the presence of hormone. To preserve the integrity of ER and rule out the possibility of proteolytic degradationas the cause of the absent ER-ERE binding, we added leupeptinto the extraction buffer. However, the addition of the proteol-ysis inhibitor did not reverse the lack of ER-ERE complexformation in E?—/ERE— tumors or even in one E2+/ERE—cancer, suggesting the presence of intrinsic defects of the DNA-

binding domain.The intensity of the ER-ERE band was influenced by the

length of the ERE probe. The 15-base pair probe yielded astronger signal than the 35-base pair probe and, at the sametime, reduced the nonspecific binding (Fig. 4). In this regard, itis of interest that other proteins interact with ERE, e.g., an M,50,000 binding protein of the major histocompatibility complexclass I genes (24). Crude extracts from HeLa or yeast cellsexpressing human ER readily form ER-ERE complexes,whereas purified ER does not unless the reaction mixture issupplemented with an M, 45,000 protein purified from yeast(25). Finally, the nonspecific binding was diminished bypoly(dl-dC) which we routinely added in three concentrationsto allow for variability of nonspecific binding between tumorsand to provide replicate test results on individual tumor extracts(Fig. 2).

By performing both hormone- and DNA-binding assays ofER and the hormone-binding assay of PR, we can subdividebreast cancers into a total of eight theoretically possible phe-notypes (Fig. 7). In this study we observed all of the categoriesexcept the E2—/ERE-/PR+ phenotype. The majority of tumorswere classified as E2+/ERE+/PR+ (29%) or E2-/ERE-/PR-(25%). The traditional E:+/PR— group of tumors was subdi

vided according to their ability to bind ERE into E2+/ERE+/PR- (16%) and E2+/ERE-/PR- (13%). E2-/ERE+/PR-

tumors accounted for another 14%. Only two tumors wereclassified as E:-/ERE+/PR+ (3%) and one as E2+/ERE-/

At the molecular level the lack of PR activity in the E2+/ERE+/PR- group suggests a defect in the PR gene itself or inan as yet untested domain of the ER molecule, e.g., the NH2-terminal transcriptional activation domain. Mutations withinthe A/B region have been shown to impair expression of estrogen-responsive genes (26). In contrast, the E:+/ERE— /PR—phenotype suggests an alteration of the ER itself, especiallywithin the DNA-binding domain. Such alterations have indeedbeen shown experimentally to affect DNA binding of ER withthe result of disrupting estrogenic regulation of reporter genes.For example, point mutations replacing two cysteines by twohistidines in the DNA-binding domain of ER prevent it fromactivating gene transcription (27). Substitution of three amino

acids in the DNA-binding domain converts the target gene

specificity of ER to that of the glucocorticoid receptor (28). Inbreast tumors, aberrant species of ER have not been defined atthe amino acid level. In C3H mouse mammary carcinoma, thereceptor has reduced molecular weight (53,000 instead of65,000) and its DNA binding is affected (29). Multiple lengthsof ER mRNA have been observed in E2+ human breast cancers.In addition to the full-length ER message of 6.5 kilobases, thesetumors contained 2.4- and 3.8-kilobase ER mRNA species (30,31).

The E:+/ERE—/PR— receptor phenotype offers a possible

explanation for the lack of response of some E2+ breast cancersto endocrine therapy. The defective receptor would bind estrogen but not as-acting DNA sequences, thereby failing to inducethe sequence of events which ultimately leads to tumor regression upon hormone therapy. Obviously, other explanations canbe given for the limited response of E2+ tumors. Some tumorsmay contain a heterogeneous population of E2+ and E2- cell

types. Only the E2+ cells are likely to respond to endocrinemanipulation, while the E:- cells will remain unaffected. Therefore, such tumors would show only a partial or short-termremission before progressing to a completely autonomous state.Yet other E2+ tumors may progress to a poorly differentiatedstate and lose ER detectable by hormone-binding assay (32).By the time métastasesare diagnosed, endocrine therapy wouldbe of no benefit. The cellular processes responsible for the lossof detectable receptor during the course of the disease areunknown.

For the tumors categorized as E2—/ERE+ loss of PR activitywould be consistent with disruption of the hormone-bindingdomain of ER. The majority of tumors in this category exhibited the expected E2—/ERE+/PR- phenotype. However, twotumors (3%) were classified as E2—/ERE+/PR+. Previous studies of breast cancer have defined about 5% of tumors as E2—/PR+ (8, 9). The results of the ERE-binding analysis demonstrate the presence of ER in at least some of these tumors. Ourdata are supported by Fuqua et al. (33) who observed deletionof exon 5 within the hormone-binding domain of the ERcomplementary DNA from three E2—/PR+ breast cancers.Furthermore, ER mutants constructed with serial deletionswithin the hormone-binding domain lost estrogen-binding activity but retained the ability to bind ERE and showed transcriptional induction up to 10% of the MCF-7 wild type (27).

Experimental evidence has shown that ER mutants lackingDNA-binding activity are unable to induce transcription ofestrogen-dependent genes (27). Thus, the observation of a singletumor in the E2-(-/ERE-/PR+ category suggests significantlevels of PR expression by an ER-independent mechanism. Thesame phenotype has recently been reported by another laboratory (34). For the same reason, the existence of the E2-/ERE-/

PR+ category cannot be ruled out, even though it was notobserved in the present study.

The analysis of ERE-binding in conjunction with the traditional hormone-binding assays of ER and PR may prove valuable in determining treatment and prognosis for breast cancerpatients, especially for those patients with E2+/PR— cancerssince <50% of tumors in this group respond to endocrinetherapy. We suggest that the failure to discriminate betweenpotentially responsive and unresponsive E2+/PR- tumors maybe overcome by performing the ERE-binding assay. E2+/ERE+/PR- tumors may be more likely to respond to therapy

because ER may be functionally intact in many cases and canbind to m-acting DNA elements to initiate the sequence of

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Page 6: Binding Analysis of the Estrogen Receptor to Its Specific DNA Target

BINDING OF ESTROGEN RECEPTOR AND ON¡AIN BREAST CANCER

events which ultimately leads to tumor regression upon hormone therapy. In contrast, E:+/ERE-/PR- cancers are less

likely to respond to therapy because of the demonstrably dysfunctional ER which is incapable of binding to DNA. Obviously, clinical studies relating therapy response to the statusof E:, ERE, and PR binding are required to test this hypothesis.In the meantime, the determination of 17^-estradiol and EREbinding should provide a better definition of the ER status ofindividual breast cancers. Performing both tests together withthe hormone-binding assay of PR should improve our understanding of hormone resistance in breast neoplasia and proveuseful in refining endocrine therapy of breast cancer.

ACKNOWLEDGMENTS

We thank Dr. Chris Nolan of Abbott Laboratories for anti-ER

monoclonal antibodies.

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1991;51:3405-3410. Cancer Res   Brian D. Foster, Douglas R. Cavener and Fritz F. Parl  Target Site in Human Breast CancerBinding Analysis of the Estrogen Receptor to Its Specific DNA

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