bayesian hierarchical modeling for longitudinal frequency data joseph jordan advisor: john c. kern...
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Bayesian Hierarchical Modeling for Longitudinal Frequency DataJoseph JordanAdvisor: John C. Kern IIDepartment of Mathematics and Computer ScienceDuquesne UniversityMay 6, 2005
Outline
Motivation The Model Model Simulation Model Implementation Metropolis-Hastings Sampling Algorithm Results Conclusion References
Motivation
Yale University Study: The Patrick & Catherine Weldon Donaghue Medical Foundation
Menopausal women in breast cancer remission Acupuncture relief of menopausal symptoms Unlike previous models, this model explicitly
recognizes time dependence through prior distributions
Model Simulations:Study Information
Individuals randomly assigned to 1 of 3 groups
Length of Study: 13 weeks (1 week baseline followed by 12 weeks of “treatment”
Measurement: Hot flush frequency (91 observations)
Motivation:Study Samples
Education Group: 6 individuals given weekly educational sessions
Treatment Group: 16 individuals given weekly acupuncture on effective bodily areas
Placebo Group: 17 individuals given weekly acupuncture on non-effective bodily areas
Motivation:Actual Subject Profile
Motivation:Actual Subject Profile
Mean Hot Flush Frequencies
The Model:
The Model:Prior Distributions
The Model:Prior Distributions (Non-Informative)
Model Simulation:j=.5, j=.9, 2
j=.5
Model Simulation:j=.5, j=.5, 2
j=.5
Model Implementation:Markov Chain Monte Carlo
Metropolis-Hastings Sampling:
Gibbs Sampling:
Metropolis-Hastings Sampling:Requirements
MUST know posterior distribution for parameter (product of likelihood and prior distributions)
Computational precision issues – utilize natural logs
For example:
Metropolis-Hastings Sampling: Algorithm
Gibbs Sampling:Requirements
Requirement: MUST know full conditional distribution for parameter
Sample from full conditional distribution; ALWAYS accept *
I
For Example:
Gibbs Sampling:Full Conditional Distributions
Metropolis-HastingsLikelihood for ij
ij: mean hot flush freq on days i and 2i-1 for i=1,…,44, with 45j representing the mean hot flush freq for days 89, 90, 91
Metropolis-HastingsPrior for ij
Metropolis-HastingsDifference in log posterior densities evaluated at *
ij and cij
Metropolis-HastingsLikelihood for j
Metropolis-HastingsPrior for j
Metropolis-HastingsDifference in log posterior densities evaluated at *
j and cj
Metropolis-HastingsUpdating j
Same likelihood as j
Metropolis-HastingsUpdating 2
j
Same likelihood as j
Metropolis-HastingsUpdating 0j
Same posterior as ij’s
Metropolis-HastingsLikelihood Distribution for
Metropolis-HastingsPrior Distribution for
Metropolis-HastingsUpdating
Same likelihood as Uniform prior
Metropolis-HastingsUpdating a and b
Uniform Prior Same likelihood and prior for b
Hastings Ratios
ResultsTreatment Group
ResultsTreatment Group
ResultsPlacebo Group
ResultsPlacebo Group
ResultsEducation Group
ResultsEducation Group
ResultsBoxplot for 0’s
ResultsBoxplot for Exponentiated 0
References
Borgesi, J. 2004. A Piecewise Linear Generalized Poisson Regression Approach to Modeling Longitudinal Frequency Data. Unpublished masters thesis, Duquesne University, Pittsburgh, PA, USA.
Gelman, A., Carlin, J.B., Stern, H.S., and Rubin, D.B. 1995. Bayesian Data Analysis. London: Chapman and Hall.
Gilks, W.R., Richardson, S., and Spiegelhalter, D.J. 1996. Markov Chain Monte Carlo in Practice. London: Chapman and Hall.
Kern, J. and S.M. Cohen. 2005. Menopausal symptom relief with acupuncture: modeling longitudinal frequency data. Vol 34, 3: Communications in Statistics: Simulation and Computation.