barbara baker 01-10-2004 center for plant genomics training and education multi-institutional /...
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Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
www.outreach.potatogenome.org
Multi-institutional / International Plant Genomics Training and Education
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
NSF Potato Genome Project GoalsPotato Genome Project
• Fundamental biological research on disease resistance and other important properties of potato and Solanaceae using genomics.
Potato undergoing RB gene mediated late blight disease resistance testing.
Potato 10K Microarrays Expression profiling of biotic stress
redgreen
Resistant Susceptible
•Potato Genomic Resources: Public structural and functional genomic resources.
Summer Genomics Workshop, Prosser WA
Tia BeavretHeritage College, Yakima, WA
Daniel Andrade International Potato Institute, CIP, Peru
• Outreach: Working community of scientists, educators and students to increase public awareness, training and education in plant genomics.
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
Center for Plant Genomics Training and Education
Outreach Specific Goals
• Encourage and increase participation of members of under-represented groups in plant genomics research
• Foster public awareness in the areas of biodiversity and applications of plant genomics research
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
Training and Education
Participation of Under-Represented Groups in Plant Genomics
Activities
I. Summer Genomics Workshops
II. Community Gardens
III. Public Awareness
Tara Jones and Tomas Santiago at the PGEC greenhouse in Albany, CA
Summer Camp at the UC Botanical Garden
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
I. Summer Genomics Workshops
Workshop Goals
1. Educate students about basic Solanaceae morphology and biodiversity in a hands-on environment
2. Train students in bioinformatics
3. Teach students to conduct a genomics experiment and analyze results
4. Provide students with the opportunity to present their work to the public and local communities
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
Can we use genetic markers to determine the geographical origin of the Ozette
potato?
Makah Nation Ozette Potato
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
17th century
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
I. Summer Genomics Workshops
Workshop Activities / Goals
A. Field Studies
B. Multidisciplinary Training
C. Laboratory Experience
D. Community Involvement
E. Recruitment/Evaluation
Len Black, Gary Pierce, and Dan Falco discuss the potato harvest at Heritage College
Tomas Santiago and Tara Jones conduct experiments at the Baker Lab
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
I. Summer Genomics Workshops
A. Field Studies
1. Educate students about basic Solanaceae morphology and biodiversity in a hands-on environment
UC Botanical Garden Brown Lab/ Makah Nation
Tomas Santiago and Tara Jones plant wild potatoes in the UC Botanical Gardens Crops of the World Garden.
Cassandra Smith, Hazel Denny and Neuee Wardharvest Ozette tubers.
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
I. Summer Genomics Workshops
B. Multidisciplinary Training
2. Train students in bioinformatics
UC Berkeley/ TIGR Brown Lab/ Makah Nation
Tomas Santiago and Tara Jones visit TIGR during their summer genomics workshop for bioinformatics training.
Hazel Denny, Tia Beavert and Cassandra Smith learn how to access and use TIGRs online databases.
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
I. Summer Genomics Workshops
C. Laboratory Experience
3. Teach students to conduct a genomics experiment and analyze results
UC Berkeley/ TIGR Brown Lab/ Makah Nation
Barbara Baker shows Tara and Tomas the proper procedure for grinding potato leaf tissue and extracting genomic DNA.
Daniel Andrade, CIP, reviews the principles of PCR With Cassandra Smith and Tia Beavert.
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
I. Summer Genomics Workshops
D. Community Involvement
4. Provide students with the opportunity to present their work to the public and local communities
Tara and Tomas produced a poster describing their summer genomics workshop experiment and the results they obtained.
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
I. Summer Genomics Workshops
E. Recruitment/Evaluation
Recruitment• UC Berkeley/ TIGR
• El Cerrito High School AP Biology Instructor
• 2003 Summer Genomics Participants
• Brown Lab/ Makah Nation
• Makah Nation Head Start Science Instructor
• Director, Makah Nation Cultural and Research Center
Evaluation• UC Berkeley/ TIGR
• El Cerrito High School AP Biology Instructor
• 2003 Summer Genomics Participants
• Brown Lab/ Makah Nation
• 2003 Summer Genomics Participants
• Collaborator, International Potato Center
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
Center for Plant GenomicsTraining and Education
Outreach Specific Goals
• Encourage and increase participation of members of under-represented groups in plant genomics research
• Foster public awareness in the areas of biodiversity and applications of plant genomics research
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
II. Community Gardens Garden Goals
1. Educate the public about the importance of biodiversity and genomics research in a hands-on environment
2. Provide students with a venue present their work to the public and local communities
3. Serve as a resource for hands-on plant biology and nutrition lessons
Heritage College Garden
Lauri Twitchell, Tomas Santiago, and Tara Jones put up a sun shield for the Crops of the World Display at the UC Botanical Garden
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
II. Community Gardens B. Public Forum
2. Provide students with a venue to present their work to the public and local communities
Tara and Tomas’ final poster was showcased at the UC Botanical Garden Annual Crops of the World Festival.
Tia Beavert and Sandra Hoptowit present their posters at Heritage College Garden Day.
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
III. Public Awareness Public Information
A. Curriculum
B. Posters/Displays
C. Web: Public Portal
Jenny White instructs Tara Jones at the UC Botanical Garden
Tara Jones places her sign at the UC Botanical Garden
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
III. Public Awareness A. Curriculum
• Potato Genome Project Background
• Solanaceae and Solanum Characteristics and Morphology
• Educational Articles
• Daily Calendar
• Experimental Protocol
• Additional Resources
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
III. Public AwarenessB. Signage in Community Gardens on Display
Tomas and Tara presented their final poster to an audience of parents, administrators, guests and colleagues at the annual Harvest Reception during the fall of 2004.
Tomas and Tara researched and producedinformational signs for the UC Botanical Gardens.
Tia Beavert gives a presentation about her summer genomics work to members of the Baker Lab.
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
III. Public Awareness C. Webpage: Public Portal
http://outreach.potatogenome.org
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
Center for Plant Genomics Training and Education
Summary
Develop and use genomic resources to address fundamental questions about disease resistance and other key processes in potato, an important crop worldwide.
Project GoalSpecific Goal
• Encourage and increase participation of members of under-represented groups in plant genomics research
• Foster public awareness in the areas of biodiversity and applications of plant genomics research
• Utilize genomic resources for tracing potato distribution and evolution
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
Awards/Recognition Chancellor’s Award
2003 University of California, Berkeley Chancellor’s University/ Community Partnership Recognition
Receiving the recognition award on behalf of the Plant Genomics Training and Education Program.
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
Future Plans Upcoming Projects and Events
Plant Biotechnology Curriculum
Secondary Teacher Training
Heritage College Demonstration Pavilion
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
Baker Lab, UC BerkeleyBradeen Lab, U. MinnesotaBrown Lab, USDA Prosser, WABuell Lab, TIGRJahn Lab, Cornell UniversityJiang Lab, U. WisconsinJones Lab, Sainsbury InstituteMay Lab, U. Minnesota
Potato Genome ProjectInteragency / Multi-institutional / International Plant Genomics Training and Education
El Cerrito High SchoolAllison Kittay, AP Biology Instructor
Heritage CollegeDepartment of Botany, Environmental ScienceDepartment of Agronomy and Physical ScienceDepartment of Business Administration and Accounting
UC BerkeleyBaker Lab, Plant Gene Expression CenterDepartment of Plant and Microbial Biology
Makah NationMakah Cultural and Research Center
The Institute For Genomic ResearchBuell LabEducation and Training Department
USDA-ARSBaker Lab, Albany, CABrown Lab, Prosser, WA
Yakama Nation International Potato Center
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
www.outreach.potatogenome.org
Multi-institutional / International Plant Genomics Training and Education
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
Potato Genome Project
Multi-institutional / International Plant Genomics Training and Education
USDA-ARSBaker Lab, Albany, CABrown Lab, Prosser, WA
UC BerkeleyBaker Lab, Plant Gene Expression CenterDepartment of Plant and Microbial Biology
The Institute For Genomic ResearchBuell LabEducation and Training Department
Makah NationMakah Cultural and Research Center
Heritage CollegeDepartment of Botany, Environmental ScienceDepartment of Agronomy and Physical ScienceDepartment of Business Administration Accounting
El Cerrito High SchoolAllison Kittay, AP Biology Instructor
Yakama Nation International Potato Center
Barbara Baker 01-10-2004Center for Plant Genomics Training and Education
U. MinnesotaBradeen Lab, St. Paul, MNMay Lab, St. Paul, MN
Cornell UniversityJahn Lab, Ithaca, NY
U. WisconsinJiang Lab, Madison WI
Sainsbury InstituteJones Lab, Norwich, UK
International Potato CenterMarc Ghislain, Merideth Bonierbale
Potato Genome Project
Multi-institutional / International Plant Genomics Training and Education
ARS-UC BerkeleyBaker Lab, Albany, CA
The Institute for Genomic ResearchBuell Lab
ARS-Washington State UniversityBrown Lab, Prosser, WA