bacterial physiology (micr430) lecture 13 regulation of gene expression (text chapter: 6) (moat...
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Bacterial Physiology (Micr430)
Lecture 13Regulation of Gene Expression
(Text Chapter: 6) (Moat book)
Cellular Regulations
Regulation of metabolic pathways Regulation of gene expression
Regulation of metabolic pathways
A cell has thousands of chemical reactions, if not regulated, chaos occurs
Regulation of metabolic pathways is accomplished by adjusting rate of one or more regulatory enzymes that control the overall rate of the pathway Non-covalent binding between enzyme and
pathway intermediate compounds Covalent modification of enzyme activity
Patterns of regulation
Feedback inhibition – for a biosynthetic pathway, end product is usually a negative allosteric effector for a branch point enzyme. Simple feedback; for unbranched
pathway Cumulative feedback; both effectors
exert partial inhibition Concerted feedback; no inhibition
unless both effectors bind Inhibition by isoenzymes
Patterns of feedback inhibition
Branched metabolic pathways
Patterns of regulation
Positive regulation of a pathway By intermediate of a second pathway Precursor activation
Regulatory enzymes usually control branch points of metabolic pathways and reactions are usually irreversible.
Enzyme kinetics
Non-regulatory enzymes Michaelis-Menten equation v = Vmax * S/(Km + S) When S is small compared to Km, v is
proportional to S -> v = Vmax * S/Km
When S is much larger than Km, then
v ~ Vmax
Michaelis-Menten kinetics
Enzyme kinetics
Regulatory enzymes follow sigmoidal curve.
Binding of one substrate molecule increases the affinity of the enzyme for a second substrate molecule or increases rate of product formation from site already occupied – positive cooperactivity.
Regulatory Enzymes
Enzyme kineticsConformational changes in regulatory enzymes
Regulation by covalent modification
Gene expression regulation
Definitions Structural gene Promoter Operator Operon and polycistronic Regulatory gene Inducible Repressible
Gene expression regulation
Negative control: regulatory proteins bind to operator region to prevent transcription
Positive control: regulatory proteins bind to region near promoter to increase transcription
Regulation at transcriptional level relies heavily on DNA binding proteins
The lac Operon
Responsible for utilization of lactose as a carbon source
-galactosidase, encoded by lacZ, cleaves -1,4-linkage of lactose
Permease (encoded by lacY) allows entrance of lactose
lacA encodes a thiogalactoside transacetylase, whose cellular role is not known.