avena genetic resources for quality in human consumption (aveq) startup meeting, clermont ferrand...
TRANSCRIPT
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Federal Centre of Breeding Research on Cultivated Plants
WP10: Project documentation and internet portal
Christoph U.Germeier
WP10: Project documentation and internet portal
Christoph U.Germeier
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Project Management and Coordination through an internet portal
Scientific coordination of the implementation of the action
- Ensure working of logistics.
-> Project web applications will be available for:
- Ensure orthogonality of field and lab work.- Ensure inclusion of results into an online accessible database.- Statistical analysis and generation of knowledge from the data.
- Generate fieldplans according an agreed randomization design:suggested design: augmented randomized block design
- Generate downloadable pdf and Excel sheets for data acquisitionin the field including methodology description
- Downloadable lab protocols including methodology description and sample lists
- Upload or online input of project results including pictures
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Project Platform and Web Application
- The project platform consists of two parts
1. A content management system (Typo 3) holding description of objectives, actions and means involved, list of partners and of sponsors, link to the European Avena Database, link to a test and productive version of the web applicationfile upload and download mechanism
2. A web application (JEE 5, JBoss)for interactive work with the project database (MySQL)and the EADB (Oracle)
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
http://eadb.bafz.de/aveq/1. A content management part
here our institute labels should rotate
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Link to the test application
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Web application - List working collection
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Web application - Generate Fieldplan: Ontology
Working collection:Subset of accessions selected from different sources to be used in a projectEvalution:Plan for characterisation and evaluation of a subset of the working collection in a certain vegetation period
(Field) experiment:Arrangement of treatment - accession combinations (treatments) in a certain randomisation design (experiment = randomization unit)
Fieldplan:Layout of the field design for a certain experiment (matrix of plots arranged in lanes)
Lane:Track of the sowing device, contains a (certain) number of rows.
Plot:Sowing unit in the lane with a certain treatment / accession
Row:Single line of plants
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Web application - Generate Fieldplan: Roles and Workflow
The project group decides on a set of accessions for a certain evaluation
The coordinator initializes the evaluation and its set of accessions in the project database: this ensures orthogonality of accessions evaluated on different sites in one year.
Project partners define online their experiment (name) with their restrictions: number of plots per lane (determined by their field size)and generate their adapted randomized field plan
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Web application - Generate Fieldplan
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Web application - Methodology List
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
View Experiments
View Experiment
Scale
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Fieldlist
Fieldlist
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Input Plot Yield
Input Plot Yield From Scale
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Enter TGW
Enter TGW
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Enter TGW
Enter TGW
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Enter TGW
Enter TGW
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Enter TGW
Enter TGW
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Enter TGW
Enter TGW
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Input Moisture & Testweight
Input Moisture & Testweight
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Save Fieldlist
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Thanks for your attention
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Scale
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
General View
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
General View
General View
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
List Working Collection
List Working Collection
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
View Fieldplans
View Fieldplans
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Fieldplan
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Fieldlist
Fieldlist
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Generate Fieldplan
Generate Fieldplan
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Generate Fieldplan
Generate Fieldplan
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Edit Experiment
Edit Experiment
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Edit Experiment
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Edit Experiment
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Edit Experiment
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
CSV (Excel-File)
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Upload Picture
Upload Pictures
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Input Data For Upload
Input Data For Upload
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Input Data & Upload Picture
Input Data & Upload Picture
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
List Methodology
List Methodology
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Edit Methodology
Edit Methodology
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Search Project
Search Project
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Input Data For Search Project
Input Data For Search Project
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Input Data For Search Project
Input Data For Search Project
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Select Site
Select Site
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Input Data For Select Site
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Input Data For Select Site
Input Data For Select Site
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Modification + Save For Select Site
Modification & Save For Select Site
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Index• Edit Experiment - Page 15-18• Edit Methodology - Page 35• Generate Fieldplan - Page 13-14• List Methodology - Page 34• List Working Collection - Page 9• Search Project - Page 36-38• Select Site - Page 39-42• Upload Pictures - Page 31-33• View Experiment (Fieldlist) - Page 19-29
(Fieldplan) Page 11-12 (CSV) Page 30
• View Fieldplan - Page 10-12
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Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007