antibiotic resistance of staphylococcus aureus biofilms smitha neerukonda vcu bbsi summer 2009...
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Antibiotic Resistance of Antibiotic Resistance of Staphylococcus aureus Staphylococcus aureus
BiofilmsBiofilms
Smitha NeerukondaSmitha NeerukondaVCU BBSI Summer 2009VCU BBSI Summer 2009
Mentor: Dr. Kimberly JeffersonMentor: Dr. Kimberly JeffersonAugust 3, 2009August 3, 2009
Staphylococcus aureusStaphylococcus aureus
- Gram-positive bacteria normally colonizing Gram-positive bacteria normally colonizing the nasal passages, skin and mucous the nasal passages, skin and mucous membranesmembranes11
- Opportunistic pathogen Opportunistic pathogen
Gram stain; S. aureus
http://www.labnews.co.uk/laboratory_article.php/2912/5/combating-bacterial-infection
BiofilmsBiofilms Biofilms = community of bacteria covered in Biofilms = community of bacteria covered in
extracellular polymers and attached to a surfaceextracellular polymers and attached to a surface22
Biofilms play an important role in chronic, recurrent Biofilms play an important role in chronic, recurrent infections and in medical device (eg. catheter) -infections and in medical device (eg. catheter) -related infectionsrelated infections
http://www.labnews.co.uk/laboratory_article.php/2912/5/combating-bacterial-infection
Dangers associated with Dangers associated with S. S. aureus aureus BiofilmsBiofilms
Chronic Infections/Diseases:Chronic Infections/Diseases:
Biofilms are resistant to antibiotic levels 10-1,000 times Biofilms are resistant to antibiotic levels 10-1,000 times higher than planktonic bacteriahigher than planktonic bacteria33
– Concentrations of antibiotics required to kill biofilms are Concentrations of antibiotics required to kill biofilms are not therapeutically achievablenot therapeutically achievable
Osteomyelitis Endocarditis
http://www.who.int/buruli/photos/Osteomyelitis_Nigeria_large.jpghttp://www.who.int/buruli/photos/Osteomyelitis_Nigeria_large.jpg
http://www.pathology.vcu.edu/education/cardio/images/2g-a.jpg
HypothesisHypothesis
The gross morphology of the biofilm and The gross morphology of the biofilm and the specific gene expression profile of the specific gene expression profile of biofilm bacteria are involved in increased biofilm bacteria are involved in increased resistance to antibiotics.resistance to antibiotics.
Experimental Questions:Experimental Questions:– Do antibiotics induce changes in gene expression that Do antibiotics induce changes in gene expression that
increase antibiotic resistance? increase antibiotic resistance? – What is the MBCWhat is the MBC9999 for high cell density planktonic for high cell density planktonic
cultures vs biofilms?cultures vs biofilms?– Does biofilm architecture contribute to antibiotic Does biofilm architecture contribute to antibiotic
resistance?resistance?– Does exopolysaccharide contribute to antibiotic Does exopolysaccharide contribute to antibiotic
resistance?resistance?
What is Nafcillin?What is Nafcillin? Beta-lactam antibiotic in the penicillin Beta-lactam antibiotic in the penicillin
group of drugsgroup of drugs44
Bactericidal = kills bacterial cells Bactericidal = kills bacterial cells
Prevents bacterial cell wall synthesisPrevents bacterial cell wall synthesis44
Nafcillin
Cell wall breaks down
Changes in Gene Expression Changes in Gene Expression and Antibiotic Resistance and Antibiotic Resistance
Does exposure to nafcillin induce Does exposure to nafcillin induce changes in gene expression that changes in gene expression that increase antibiotic resistance? increase antibiotic resistance?
Microarray AnalysisMicroarray AnalysisIsolate
mRNA and purify
http://www.intervet.co.nz/binaries/90_79841.jpg
http://www.mun.ca/biology/scarr/cDNA_microarray_Principle.jpg
Microarray ResultsMicroarray ResultsGeneGene UpregulatedUpregulated DownregulatedDownregulated
SAS050SAS050 7.88x7.88x
SA2331SA2331 4.06x4.06x
SA1266SA1266 4.03x4.03x
SA0267SA0267 2.66x2.66x
SAR0626SAR0626 2.85x2.85x
SACOL1579SACOL1579 2.92x2.92x
SAS2352SAS2352 3.40x3.40x
SAV0901SAV0901 4.85x4.85x
SA1927SA1927 4.89x4.89x
SACOL1788SACOL1788 9.90x9.90x
Biofilm versus Planktonic Biofilm versus Planktonic Cultures’ Resistance to Cultures’ Resistance to
Nafcillin Nafcillin
– What is the nafcillin MBCWhat is the nafcillin MBC9999 for for high density planktonic high density planktonic cultures?cultures?
MBC AssayMBC Assay
MBC = minimal bactericidal MBC = minimal bactericidal concentrationconcentration
Count colony forming units (CFUs)
Results from MBC AssayResults from MBC Assay
Biofilm Architecture and Biofilm Architecture and Antibiotic Resistance Antibiotic Resistance
– Does biofilm architecture (gross Does biofilm architecture (gross morphological structure) morphological structure) contribute to antibiotic contribute to antibiotic resistance?resistance?
Confocal MicroscopyConfocal Microscopy Method to visualize Method to visualize viability of cells in viability of cells in biofilm after treatment biofilm after treatment with nafcillinwith nafcillin
LIVE/DEAD ViabilityLIVE/DEAD Viability/Cytotoxicity Kit: two-color /Cytotoxicity Kit: two-color assayassay55
– RedRed indicates dead cells indicates dead cells– GreenGreen indicates viable, indicates viable, alive cellsalive cells
http://www.olympusconfocal.com/theory/images/theoryheader.jpg
Confocal Images
Control Nafcillin-treatedNafcillin-treated
Confocal Images
Control Nafcillin-treatedNafcillin-treated
MBC AssaysMBC Assays
Exopolysaccharide Matrix and Exopolysaccharide Matrix and Antibiotic Resistance Antibiotic Resistance
– Does exopolysaccharide Does exopolysaccharide contribute to antibiotic contribute to antibiotic resistance?resistance?
Exopolysaccharide Matrix and Exopolysaccharide Matrix and Antibiotic ResistanceAntibiotic Resistance
Biofilm matrix can Biofilm matrix can selectively hinder antibiotic selectively hinder antibiotic penetration through the penetration through the biofilm (depends on size biofilm (depends on size and charge)and charge)33
PNAG = PNAG = ββ-1-6-linked -1-6-linked NN--acetylglucosamine = acetylglucosamine = polysaccharide polysaccharide encapsulating biofilmencapsulating biofilm33
PNAG is produced by PNAG is produced by icaADBCicaADBC gene products gene products
Does PNAG contribute to Does PNAG contribute to antibiotic resistance? antibiotic resistance? http://www3.niaid.nih.gov/NR/rdonlyres/263D4EDB-3C96-4AC6-8C58-B7AF8F6CF2C5/0/staphylococcus_epidermidis.jpg
PNAG-negative PNAG-negative S. aureus S. aureus MutantsMutants
Approach: Compare resistance of a Approach: Compare resistance of a wildtype strain to a PNAG-negative wildtype strain to a PNAG-negative strain (SA113 vs SA113strain (SA113 vs SA113ica)ica)..
If PNAG contributes to biofilm If PNAG contributes to biofilm formation, then how do we get biofilms formation, then how do we get biofilms from SA113from SA113icaica??
ResultsResults
Optimal Media for Biofilm FormationOptimal Media for Biofilm Formation– Tryptic Soy Broth (TSB) + 3.5% NaClTryptic Soy Broth (TSB) + 3.5% NaCl
MBC AssayMBC Assay– No difference in viability of SA113 and No difference in viability of SA113 and
SA113SA113ΔΔicaica in the presence of 100 in the presence of 100g/mL g/mL nafcillinnafcillin
ConclusionsConclusions
Increased antibiotic resistance of Increased antibiotic resistance of S. S. aureus aureus biofilms:biofilms:– Gene expression is altered Gene expression is altered – Biofilms are more resistant to nafcillin Biofilms are more resistant to nafcillin
thanthanplanktonic culturesplanktonic cultures
– Biofilm architecture does not contribute Biofilm architecture does not contribute substantially substantially
– PNAG does not contribute substantiallyPNAG does not contribute substantially
What are persister cells?What are persister cells?
Nondividing, dormant cellsNondividing, dormant cells Will neither grow nor die in the Will neither grow nor die in the
presence of antibiotic stresspresence of antibiotic stress
Experimental QuestionsExperimental Questions
Which genes in the Which genes in the S. aureus S. aureus genome contribute to the persister genome contribute to the persister phenotype? phenotype?
How many persister cells are present How many persister cells are present in biofilm and planktonic (free-in biofilm and planktonic (free-floating bacteria) populations after floating bacteria) populations after antibiotic treatment?antibiotic treatment?
The genotypic basis of The genotypic basis of persister cellspersister cells
Which genes in the Which genes in the S. aureus S. aureus genome contribute to the persister genome contribute to the persister phenotype?phenotype?
Genomic Expression LibraryGenomic Expression Library
•Digested fragments separated via gel electrophoresis
•Transformed into E. coli cells
•Transformants selected on ampicillin-infused media
Gel ElectrophoresisGel Electrophoresis
Restriction Enzymes to Cut Restriction Enzymes to Cut Genomic DNAGenomic DNA
S. aureus S. aureus strain 10833strain 10833 genomic DNAgenomic DNA– DNase I + DNA polymerase IDNase I + DNA polymerase I– XbaI/SpeI XbaI/SpeI
XbaI: XbaI: T C T A G A becomes T C T A G A becomes T + C T A G A T + C T A G A A G A T C T A G A T C T A G A T C T A G A T C T SpeI: A C T A G T becomes SpeI: A C T A G T becomes A + C T A G T A + C T A G T T G A T C A T G A T C A T G A T C A T G A T C A
– Sau3AISau3AI AGATCG becomes AGATCG becomes A + GATCG A + GATCG TCTAGCTCTAGC TCTAG CTCTAG C
Restriction Enzymes to Cut Restriction Enzymes to Cut PlasmidPlasmid
Plasmid pCl15Plasmid pCl15– SmaISmaI– BamHI BamHI
Results: Digestion of Genomic Results: Digestion of Genomic DNADNA
XbaI/SpeI:XbaI/SpeI:
MiniprepsMinipreps
Digestion and gel electrophoresis
Visualize fragments
Quantification of Persister Quantification of Persister CellsCells
How many persister cells are present How many persister cells are present in biofilm and planktonic (free-in biofilm and planktonic (free-floating bacteria) populations after floating bacteria) populations after antibiotic treatment?antibiotic treatment?
CiprofloxacinCiprofloxacin
Quinolone antibiotic Quinolone antibiotic Prevents supercoiling Prevents supercoiling
of DNA by inhibiting of DNA by inhibiting
DNA gyraseDNA gyrase Bactericidal = kills Bactericidal = kills
bacteriabacteria
DNA gyrase
ReferencesReferences1. Götz, F., T. Bannerman, and K.-H. Schleifer. 2006. The Genera 1. Götz, F., T. Bannerman, and K.-H. Schleifer. 2006. The Genera
Staphylococcus Staphylococcus and and Macrococcus. Macrococcus. In: In: The Prokaryotes: A Handbook on the The Prokaryotes: A Handbook on the Biology of Bacteria: Firmicutes: Firmicutes with Low GC Content of DNA Biology of Bacteria: Firmicutes: Firmicutes with Low GC Content of DNA (Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, H.-K., Stackebrandt, E., (Dworkin, M., Falkow, S., Rosenberg, E., Schleifer, H.-K., Stackebrandt, E., eds.). eds.). Springer New York, NY, pp. 11-59Springer New York, NY, pp. 11-59
2. 2. Monroe, D. 2007. Looking for Chinks in the Armor of Bacterial Biofilms. Monroe, D. 2007. Looking for Chinks in the Armor of Bacterial Biofilms. PLoS PLoS BiologyBiology. 5(11): 2458.. 5(11): 2458.
3. Jefferson K. K., D. A. Goldmann, and G. B. Pier. (2005). Use of confocal 3. Jefferson K. K., D. A. Goldmann, and G. B. Pier. (2005). Use of confocal microscopy to analyze the rate of vancomycin-binding in Staphylococcus microscopy to analyze the rate of vancomycin-binding in Staphylococcus aureus biofilms. Antimicrob. Agents Chemother. 49(6): 2467-2473.aureus biofilms. Antimicrob. Agents Chemother. 49(6): 2467-2473.
4. Cerner Multum, Inc. Nafcillin. November 1, 2006. July 30, 2008 4. Cerner Multum, Inc. Nafcillin. November 1, 2006. July 30, 2008 http://www.drugs.com/mtm/nafcillin.htmlhttp://www.drugs.com/mtm/nafcillin.html
5. Invitrogen. LIVE/DEAD® 5. Invitrogen. LIVE/DEAD® BacBacLight™ Bacterial Viability Kit. 2008. July 30, Light™ Bacterial Viability Kit. 2008. July 30, 2008 <http://products.invitrogen.com/ivgn/en/US/adirect/invitrogen?2008 <http://products.invitrogen.com/ivgn/en/US/adirect/invitrogen?cmd=catProductDetail&entryPoint=adirect&productID=L7007&messageTycmd=catProductDetail&entryPoint=adirect&productID=L7007&messageType=catProductDetail>pe=catProductDetail>