annual review, brussels march xx, 2006 semanticmining no.507505 annual review noe no. 507505...

20
Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20 [SemanticMining]

Upload: neil-phelps

Post on 18-Jan-2018

215 views

Category:

Documents


0 download

DESCRIPTION

Annual Review, Brussels March XX, 2006 SemanticMining No Multilingual Lexicon. Goals for 2005 MorphoEdit lexicon editor MorphoSaurus segmenter & indexer Exchange of French and Swedish lexemes Sharing Tools and Resources International Cooperation Fund Raising Dissemination and Standards activities Standardization of Lexicon Interchange Format Negotiations on Semantic Medical document indexing with private and public partners in Germany 1 IST call 4 proposal Catholic University of Paraná, Brazil –Lexeme acquisition –EHR indexing and retrieval

TRANSCRIPT

Page 1: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Annual Review

NoE No. 507505Semantic Interoperability and Data Mining in Biomedicine

WP20[SemanticMining]

Page 2: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Outline

• From 2005 to 2006…

• Semantic Mining in Biomedicine (D15)

• Multilingual Medical Dictionary – Report on multi-lingual medical dictionary (D20.1)– Interchange format for multi-lingual dictionaries (D20.2)

• Next ?

Page 3: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Multilingual Lexicon. Goals for 2005

• MorphoEdit lexicon editor• MorphoSaurus segmenter &

indexer• Exchange of French and

Swedish lexemes

Sharing Tools and Resources

International Cooperation Fund Raising

Dissemination and Standards activities

• Standardization of Lexicon Interchange Format

• Negotiations on Semantic Medical document indexing with private and public partners in Germany

• 1 IST call 4 proposal

•Catholic University of Paraná, Brazil

–Lexeme acquisition–EHR indexing and retrieval

Page 4: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Multilingual Lexicon. Goals for 2005

• MorphoEdit lexicon editor• MorphoSaurus segmenter &

indexer• Exchange of French and Swedish

lexemes

Sharing Tools and Resources

International Cooperation Fund Raising

Dissemination and Standards activities

• Standardization of Lexicon Interchange Format

• Negotiations on Semantic Medical document indexing with private and public partners in Germany

• 1 IST call 4 proposal

• Enhancement of Lexicon• Joint development of lexicon

acquisition methodologies• Joint corpus acquisition• IR showcase applications

Page 5: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Page 6: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Multilingual Lexicon. Goals for 2005

• MorphoEdit lexicon editor• MorphoSaurus segmenter &

indexer• Exchange of French and Swedish

lexemes

Sharing Tools and Resources

International Cooperation Fund Raising

Dissemination and Standards activities

• Standardization of Lexicon Interchange Format

• Negotiations on Semantic Medical document indexing with private and public partners in Germany

• 1 IST call 4 proposal

• Enhancement of Lexicon• Joint development of lexicon

acquisition methodologies• Joint corpus acquisition• IR showcase applications

Page 7: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Page 8: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Multilingual Lexicon. Goals for 2005

• MorphoEdit lexicon editor• MorphoSaurus segmenter &

indexer• Exchange of French and Swedish

lexemes

Sharing Tools and Resources

International Cooperation Fund Raising

Dissemination and Standards activities

• Standardization of Lexicon Interchange Format

• Negotiations on Semantic Medical document indexing with private and public partners in Germany

• 1 IST call 4 proposal

• Enhancement of Lexicon• Joint development of lexicon

acquisition methodologies• Joint corpus acquisition• IR showcase applications

Page 9: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Page 10: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Page 11: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Page 12: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Page 13: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Multilingual Lexicon. Goals for 2005

• MorphoEdit lexicon editor• MorphoSaurus segmenter &

indexer• Exchange of French and

Swedish lexemes

Sharing Tools and Resources

International Cooperation Fund Raising

Dissemination and Standards activities

• Standardization of Lexicon Interchange Format

• Negotiations on Semantic Medical document indexing with private and public partners in Germany

• 1 IST call 4 proposal

•Catholic University of Paraná, Brazil

–Lexeme acquisition–EHR indexing and retrieval

Page 14: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Multilingual Lexicon. Goals for 2005

• MorphoEdit lexicon editor• MorphoSaurus segmenter &

indexer• Exchange of French and

Swedish lexemes

Sharing Tools and Resources

International Cooperation Fund Raising

Dissemination and Standards activities

• Standardization of Lexicon Interchange Format

• Standardization of Corpus Interchange

• Negotiations on Semantic Medical document indexing with private and public partners in Germany

• 1 IST call 4 proposal

•Catholic University of Paraná, Brazil

–Lexeme acquisition–EHR indexing and retrieval

Page 15: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Page 16: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Multilingual Lexicon. Goals for 2005

• MorphoEdit lexicon editor• MorphoSaurus segmenter &

indexer• Exchange of French and

Swedish lexemes

Sharing Tools and Resources

International Cooperation Fund Raising

Dissemination and Standards activities

• Standardization of Lexicon Interchange Format

• Standardization of Corpus Interchange

• Negotiations on Semantic Medical document indexing with private and public partners in Germany

• 1 IST call 4 proposal

•Catholic University of Paraná, Brazil

–Lexeme acquisition–EHR indexing and retrieval

Page 17: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Multilingual Lexicon. Goals for 2005

• MorphoEdit lexicon editor• MorphoSaurus segmenter &

indexer• Exchange of French and

Swedish lexemes

Sharing Tools and Resources

International Cooperation Fund Raising

Dissemination and Standards activities

• Standardization of Lexicon Interchange Format

• Negotiations on Semantic Medical document indexing with private and public partners in Germany

• 1 IST call 4 proposal

•Catholic University of Paraná, Brazil

–Lexeme acquisition–EHR indexing and retrieval

WP 20 partners involved in several new EU projects

(@neurist, BootSTREP…)

Page 18: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

2005: Evaluation: Multilingual Medical Dictionary (WP20)

• Q1. Workshops and Symposiums– Active Participation at Summer School 2005– Preparation of Workshop at LREC ’06 “Acquiring and representing

multilingual, specialized lexicons: the case of biomedicine”– Presentations in numerous international conferences (ACM-SIGIR,

MIE, AMIA, MEDNET…)

• Q2. Sharing of resources and use of research software tools– lexical resources, lexicon editing tools, lexicon acquisition tools,

domain specific text corpora

• Q6. Short and medium-term visits– 8 short and medium term visits

• Q7. Co-authoring of research papers – 13 co-authored peer-reviewed papers

Page 19: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

2006 ?

Page 20: Annual Review, Brussels March XX, 2006 SemanticMining No.507505 Annual Review NoE No. 507505 Semantic Interoperability and Data Mining in Biomedicine WP20

Annual Review, Brussels March XX, 2006 SemanticMining No.507505

Goals for 2006

• Enhance showcase applications• Automatically acquire

acronyms expansions• Complete and share domain

corpora

Sharing Tools and Resources

International CooperationFund Raising

Dissemination and Standards activities

• Use of acquired lexicons, lexical links and corpora for bootstrapping the acquired lexicon

• At least one contract between one WP20 partner and a private or public customer

• Preparation of IP project for 7th Framework programme, expanding the lexicon’s scope to all major European languages

•Catholic University of Paraná, Brazil

–Lexicon validation–Semantic EHR indexing and retrieval in a hospital setting