analysis of populations of networks: structure spaces and ......calissano, vantini thesis...

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Page 1: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of
Page 2: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of
Page 3: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of
Page 4: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of
Page 5: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

Marron, J. Steve, and Andrés M. Alonso. "Overview of object oriented data analysis." Biometrical Journal 56.5 (2014): 732-753.

Page 6: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

𝑿𝟏, 𝑿𝟐, …

Marron, J. Steve, and Andrés M. Alonso. "Overview of object oriented data analysis." Biometrical Journal 56.5 (2014): 732-753.

Page 7: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

Page 8: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of
Page 9: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

Wang and Marron (2007), Aydın, et al. (2009), Feragen et al. (2013), Nye, et al. (2017),

Simpson, et al. (2013), Ginestet, et al. (2017), Lovato, et al. (2017)

Durante et al. (2017), Durante and Dunson (2018)

Duvenaud et al. (2015)

Jain et al. (2009)

Page 10: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

x = 𝑃, 𝑅, α

P

𝑅 ∈ 𝑃𝑟 r=2

α: R → 𝑀

Jain, Brijnesh J., and Klaus Obermayer. "Structure spaces." Journal of Machine Learning Research 10.Nov (2009): 2667-2714.

Page 11: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

𝒇𝟏(𝒙)

𝒇𝟐(𝒙)

Page 12: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

𝒇𝟏(𝒙)

𝒇𝟐(𝒙)

Page 13: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

x = 𝑃, 𝑅, α

P={0,1,2}

𝑅 ∈ 𝑃2, 𝑅 = { 0,1 , 0,2 }

α: R → ℝ

α 0,1 = 300

α 0,2 = 121

Page 14: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of
Page 15: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of
Page 16: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

𝐗 = ℝ𝟗

Page 17: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

𝒙𝟏 𝒙𝟐 𝒙𝟑

Page 18: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

𝒙𝟏 𝒙𝟐 𝒙𝟑

𝒙𝟐 = 𝒙𝟑

Page 19: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

𝐗/T

𝐗

T :

𝒙𝟏 {T𝑥1: T ∈ T}

𝒙𝟏 𝒙𝟐 𝒙𝟑

𝒙𝟐 {T𝑥2: T ∈ T}

Page 20: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of
Page 21: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

𝐗/T

𝐗

𝒙𝟏

𝒙𝟐

𝒙𝟑

Page 22: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

𝐗/T

𝐗

𝒙𝟏

𝒙𝟐

𝒙𝟑

T :

Page 23: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of
Page 24: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of
Page 25: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of
Page 26: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of
Page 27: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of
Page 28: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

𝐗/T

𝐗

ϰ ∊ 𝒙𝟐 𝐗/

𝒙𝟏 𝒙𝟐 𝒙𝟑

∊ 𝒙𝟐

Page 29: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

𝐗/T

𝐗

𝒙𝟏 𝒙𝟐 𝒙𝟑ϰ ∊ 𝒙𝟐 𝐗/

𝜘 x1, 𝑥2, … , 𝑥𝑛 𝐗

𝒙𝟏

𝒙𝟐

𝒙𝟑

Page 30: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

𝐗/T

𝐗

𝒙𝟏 𝒙𝟐 𝒙𝟑

ϰ ∊ 𝒙𝟐 𝐗/𝜘 x1, 𝑥2, … , 𝑥𝑛 𝐗

θ

θ

𝒙𝟏

𝒙𝟐

𝒙𝟑

Page 31: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of

𝐗/T

𝐗

𝒙𝟏 𝒙𝟐 𝒙𝟑

θ

𝒙𝟏

𝒙𝟐

𝒙𝟑θ

x˜ ∊ 𝒙𝟐 𝐗/x˜ x1, 𝑥2, … , 𝑥𝑛 𝐗

θϰ = θ

Page 32: Analysis of Populations of Networks: Structure Spaces and ......Calissano, Vantini Thesis KTH-Polimi(2017) Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of
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Aydın, Burcu, et al. "A principal component analysis for trees." The Annals of Applied Statistics 3.4 (2009): 1597-1615.

Dumont, J. “Object Oriented Data Analysis in the study of two population of texts” sup. Calissano, Vantini Thesis KTH-Polimi (2017)

Durante, Daniele, and David B. Dunson. "Bayesian inference and testing of group differences in brain networks." Bayesian Analysis 13.1 (2018): 29-58.

Durante, Daniele, David B. Dunson, and Joshua T. Vogelstein. "Nonparametric Bayes modeling of populations of networks." Journal of the American Statistical Association 112.520 (2017): 1516-1530.

Duvenaud, David K., et al. "Convolutional networks on graphs for learning molecular fingerprints." Advances in neural information

processing systems. 2015.

Feragen, Aasa, et al. "Tree-space statistics and approximations for large-scale analysis of anatomical trees." International Conference on Information Processing in Medical Imaging. Springer, Berlin, Heidelberg, 2013.

Fletcher, Thomas. "Geodesic regression on Riemannian manifolds." Proceedings of the Third International Workshop on Mathematical Foundations of Computational Anatomy-Geometrical and Statistical Methods for Modelling Biological Shape Variability. 2011.

Ginestet, Cedric E., et al. "Hypothesis testing for network data in functional neuroimaging." The Annals of Applied Statistics 11.2 (2017): 725-750.

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Huckemann, Stephan, Thomas Hotz, and Axel Munk. "Intrinsic shape analysis: Geodesic PCA for Riemannian manifolds modulo isometric Lie group actions." Statistica Sinica (2010): 1-58.

Jain, Brijnesh J., and Klaus Obermayer. "Structure spaces." Journal of Machine Learning Research 10.Nov (2009): 2667-2714.

Marron, J. Steve, and Andrés M. Alonso. "Overview of object oriented data analysis." Biometrical Journal 56.5 (2014): 732-753.

Nye, Tom MW, et al. "Principal component analysis and the locus of the Fréchet mean in the space of phylogenetic trees." Biometrika 104.4 (2017): 901-922

Ramsay, James O., and Bernard W. Silverman. Applied functional data analysis: methods and case studies. Springer, 2007.

Simpson, Sean L., F. DuBois Bowman, and Paul J. Laurienti. "Analyzing complex functional brain networks: fusing statistics and network science to understand the brain." Statistics surveys 7 (2013): 1.

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