"analysing and searching unstructured medical data", allan hanbury, sr. researcher at tu...

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Analysing and Searching Unstructured Medical Data Allan Hanbury TU Wien, context.flow, Research Studios Austria

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Page 1: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

Analysing and Searching Unstructured Medical Data

Allan HanburyTU Wien, context.flow,

Research Studios Austria

Page 2: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

STRUCTURED

UNSTRUCTUREDTEXT IMAGE

Page 3: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

For every paid healthcare service in Austria, there is one data line including:- date- patient ID- doctor / hospital ID- geolocation- diagnosis and side diagnoses- prescribed drug (ingredient)- price of generic drug- pharmacy, date, and price for drug

January 1st, 2006 - December 31st, 2007

Stefan Thurner et al, Medical University of Vienna

Pseudonymised health insurance claims data

Page 4: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

Comorbidities

Stefan Thurner et al, Medical University of Vienna

Page 5: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

rela

tive

risk

sex

ratio

Diabetes type 1 Diabetes type 2P Klimek, A Kautzky, A Chmiel, S Thurner, PLoS Comput Biol (2015)

Page 6: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

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UNSTRUCTUREDTEXT IMAGE

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Page 8: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow
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2004 Study

1 394 764 patients

Manually Added ICD-9 Codes

doi:10.1016/S0140-6736(05)17864-7

Page 10: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

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2004 Study

1 394 764 patients

Manually Added ICD-9 Codes

Page 11: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

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2012 Study

14000 patients

doi:10.1186/2041-1480-3-S1-S5

Page 12: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

2010

Page 13: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

• Low temperature

• Rhinovirus

4-Hydroxyacetanilide

• Oral Daily• Doctor of Optometry• Familial Osteochondritis

Dissecans

Mr ZZZZZ complained of a cold, and was prescribed paracetamol OD.

Page 14: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

Detecting Antipsychotic Polypharmacy

Page 15: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow
Page 16: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

Medical Documents

Patient Records

Information Extraction

Semantic Search

Machine Translation

Readability

Search Log Analysis

Trustability

Knowledge base

English, German, Czech, French, Swedish, Hungarian, Polish, Spanish, …

Services for multilingual medical text analysis and search

http://kconnect.eu

http://cloud.kconnect.eu

Page 17: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

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It is estimated that medical imaging data occupies 30% of world storage

Page 19: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

2010

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Page 22: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

Image Manipulation

Page 23: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

Image Manipulation

Page 24: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow
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Page 29: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow
Page 30: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow
Page 31: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

We believe that it is inefficient, and in some cases unethical, to store [population-based data] without installing mechanisms to allow access and publication in appropriate and useful ways.

Feufel et al., 2011

http://mitpress.mit.edu/books/better-doctors-better-patients-better-decisions

Page 32: "Analysing and Searching Unstructured Medical Data", Allan Hanbury, Sr. Researcher at TU Wien, Co-Founder of contextflow

Dr. Allan Hanbury

Institut für Softwaretechnik und interaktive SystemeTU Wien

Favoritenstr. 9-11/1881040 Vienna

Austria

Context.flow GmbHErzherzog Johann Platz 1

1040 ViennaAustria

Telefon: +43 1 58801 188310Mobil: +43 676 978 0991

e-mail: [email protected]@contextflow.com

http://kconnect.eu and http://cloud.kconnect.eu http://contextflow.com