an introduction to bibtex and jabref - biostatistics - johns
TRANSCRIPT
![Page 1: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/1.jpg)
BibTeXJabRef
An introduction to BibTeX and JabRef
Rongheng Lin
NIEHS, Biostatistics Branch
2/24/2006
Rongheng Lin An introduction to BibTeX and JabRef
![Page 2: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/2.jpg)
BibTeXJabRef
References
I
http://www.ecst.csuchico.edu/˜jacobsd/bib/formats/bibtex.html
I http://jabref.sourceforge.net
I “The not so short introduction to LATEX2e ” by Tobias Oetikeret. al.
Rongheng Lin An introduction to BibTeX and JabRef
![Page 3: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/3.jpg)
BibTeXJabRef
Figure: Citation in LATEX
Rongheng Lin An introduction to BibTeX and JabRef
![Page 4: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/4.jpg)
BibTeXJabRef
What is BibTeX
I Program and file format
I Designed by Oren Patashnik and Leslie Lamport in 1985
I character based
I Field (tag) based
I Expandable.
Rongheng Lin An introduction to BibTeX and JabRef
![Page 5: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/5.jpg)
BibTeXJabRef
What is BibTeX
I Program and file format
I Designed by Oren Patashnik and Leslie Lamport in 1985
I character based
I Field (tag) based
I Expandable.
Rongheng Lin An introduction to BibTeX and JabRef
![Page 6: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/6.jpg)
BibTeXJabRef
What is BibTeX
I Program and file format
I Designed by Oren Patashnik and Leslie Lamport in 1985
I character based
I Field (tag) based
I Expandable.
Rongheng Lin An introduction to BibTeX and JabRef
![Page 7: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/7.jpg)
BibTeXJabRef
What is BibTeX
I Program and file format
I Designed by Oren Patashnik and Leslie Lamport in 1985
I character based
I Field (tag) based
I Expandable.
Rongheng Lin An introduction to BibTeX and JabRef
![Page 8: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/8.jpg)
BibTeXJabRef
What is BibTeX
I Program and file format
I Designed by Oren Patashnik and Leslie Lamport in 1985
I character based
I Field (tag) based
I Expandable.
Rongheng Lin An introduction to BibTeX and JabRef
![Page 9: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/9.jpg)
BibTeXJabRef
Structure of a BibTeX item
I entry types: article, book, ...
I key word
I standard fields: author, title, year, journal, etc
I Others: strings, preample, ...
Rongheng Lin An introduction to BibTeX and JabRef
![Page 10: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/10.jpg)
BibTeXJabRef
Structure of a BibTeX item
I entry types: article, book, ...
I key word
I standard fields: author, title, year, journal, etc
I Others: strings, preample, ...
Rongheng Lin An introduction to BibTeX and JabRef
![Page 11: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/11.jpg)
BibTeXJabRef
Structure of a BibTeX item
I entry types: article, book, ...
I key word
I standard fields: author, title, year, journal, etc
I Others: strings, preample, ...
Rongheng Lin An introduction to BibTeX and JabRef
![Page 12: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/12.jpg)
BibTeXJabRef
Structure of a BibTeX item
I entry types: article, book, ...
I key word
I standard fields: author, title, year, journal, etc
I Others: strings, preample, ...
Rongheng Lin An introduction to BibTeX and JabRef
![Page 13: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/13.jpg)
BibTeXJabRef
An example of bibtex item
@article{Katz:Zege:esti:1994,author = {Katz, Joanne and Zeger, Scott L.},
title = {Estimation of Design Effects in Cluster Surveys},year = {1994},
journal = {Annals of Epidemiology},volume = {4},pages = {295–301}
}
Rongheng Lin An introduction to BibTeX and JabRef
![Page 14: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/14.jpg)
BibTeXJabRef
Usage of bibtex in tex file
I \bibliography{mybibfilename} % .bib file\bibliographystyle{mystylefilename} % .bst file
I Compiling procedure:Latex → bibtex → latex once (or more) again.(aux file and bbl file)
I Different journals have different .bst files.
I Get the latest bibtex file from your advisor.
I StatIndex (www.statindex.org) is your friend.
Rongheng Lin An introduction to BibTeX and JabRef
![Page 15: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/15.jpg)
BibTeXJabRef
Usage of bibtex in tex file
I \bibliography{mybibfilename} % .bib file\bibliographystyle{mystylefilename} % .bst file
I Compiling procedure:Latex → bibtex → latex once (or more) again.(aux file and bbl file)
I Different journals have different .bst files.
I Get the latest bibtex file from your advisor.
I StatIndex (www.statindex.org) is your friend.
Rongheng Lin An introduction to BibTeX and JabRef
![Page 16: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/16.jpg)
BibTeXJabRef
An item in bbl file
Rongheng Lin An introduction to BibTeX and JabRef
![Page 17: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/17.jpg)
BibTeXJabRef
What is JabRef?
I JabRef is an open source bibliography reference manager.
I The native file format used by JabRef is BibTeX
I JabRef runs across platforms via Java VM
Rongheng Lin An introduction to BibTeX and JabRef
![Page 18: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/18.jpg)
BibTeXJabRef
A screenshot of JabRef
Rongheng Lin An introduction to BibTeX and JabRef
![Page 19: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/19.jpg)
BibTeXJabRef
Features of JabRef
I Advanced BibTeX editor
I Search functions.
I Classification of entries
I Various import and export formats
I Customization of BibTeX fields.
I Search Medline and Citeseer
I Literature management
I ...
Rongheng Lin An introduction to BibTeX and JabRef
![Page 20: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/20.jpg)
BibTeXJabRef
Features of JabRef
I Advanced BibTeX editor
I Search functions.
I Classification of entries
I Various import and export formats
I Customization of BibTeX fields.
I Search Medline and Citeseer
I Literature management
I ...
Rongheng Lin An introduction to BibTeX and JabRef
![Page 21: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/21.jpg)
BibTeXJabRef
Features of JabRef
I Advanced BibTeX editor
I Search functions.
I Classification of entries
I Various import and export formats
I Customization of BibTeX fields.
I Search Medline and Citeseer
I Literature management
I ...
Rongheng Lin An introduction to BibTeX and JabRef
![Page 22: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/22.jpg)
BibTeXJabRef
Features of JabRef
I Advanced BibTeX editor
I Search functions.
I Classification of entries
I Various import and export formats
I Customization of BibTeX fields.
I Search Medline and Citeseer
I Literature management
I ...
Rongheng Lin An introduction to BibTeX and JabRef
![Page 23: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/23.jpg)
BibTeXJabRef
Features of JabRef
I Advanced BibTeX editor
I Search functions.
I Classification of entries
I Various import and export formats
I Customization of BibTeX fields.
I Search Medline and Citeseer
I Literature management
I ...
Rongheng Lin An introduction to BibTeX and JabRef
![Page 24: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/24.jpg)
BibTeXJabRef
Some examples
I Fetch a citation from Medline
I link to the downloaded file
I Use entries from StatIndex
I New Subdataset based on .aux file
Rongheng Lin An introduction to BibTeX and JabRef
![Page 25: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/25.jpg)
BibTeXJabRef
Some examples
I Fetch a citation from Medline
I link to the downloaded file
I Use entries from StatIndex
I New Subdataset based on .aux file
Rongheng Lin An introduction to BibTeX and JabRef
![Page 26: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/26.jpg)
BibTeXJabRef
Some examples
I Fetch a citation from Medline
I link to the downloaded file
I Use entries from StatIndex
I New Subdataset based on .aux file
Rongheng Lin An introduction to BibTeX and JabRef
![Page 27: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/27.jpg)
BibTeXJabRef
Some examples
I Fetch a citation from Medline
I link to the downloaded file
I Use entries from StatIndex
I New Subdataset based on .aux file
Rongheng Lin An introduction to BibTeX and JabRef
![Page 28: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/28.jpg)
BibTeXJabRef
Some examples
I Fetch a citation from Medline
I link to the downloaded file
I Use entries from StatIndex
I New Subdataset based on .aux file
Rongheng Lin An introduction to BibTeX and JabRef
![Page 29: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/29.jpg)
BibTeXJabRef
More tricks
I Again! www.statindex.org is your friend.
I Define Strings
I Edit bbl file: don’t bibtex again!
Rongheng Lin An introduction to BibTeX and JabRef
![Page 30: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/30.jpg)
BibTeXJabRef
More tricks
I Again! www.statindex.org is your friend.
I Define Strings
I Edit bbl file: don’t bibtex again!
Rongheng Lin An introduction to BibTeX and JabRef
![Page 31: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/31.jpg)
BibTeXJabRef
More tricks
I Again! www.statindex.org is your friend.
I Define Strings
I Edit bbl file: don’t bibtex again!
Rongheng Lin An introduction to BibTeX and JabRef
![Page 32: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/32.jpg)
BibTeXJabRef
Summary
I Get the latest bib file from your advisor
I Use Statindex and Medline
I Enjoy JabRef
Enjoy your study in Hopkins!
Rongheng Lin An introduction to BibTeX and JabRef
![Page 33: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/33.jpg)
BibTeXJabRef
Summary
I Get the latest bib file from your advisor
I Use Statindex and Medline
I Enjoy JabRef
Enjoy your study in Hopkins!
Rongheng Lin An introduction to BibTeX and JabRef
![Page 34: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/34.jpg)
BibTeXJabRef
Summary
I Get the latest bib file from your advisor
I Use Statindex and Medline
I Enjoy JabRef
Enjoy your study in Hopkins!
Rongheng Lin An introduction to BibTeX and JabRef
![Page 35: An introduction to BibTeX and JabRef - Biostatistics - Johns](https://reader036.vdocuments.us/reader036/viewer/2022081622/613d4f24736caf36b75bcc47/html5/thumbnails/35.jpg)
BibTeXJabRef
Summary
I Get the latest bib file from your advisor
I Use Statindex and Medline
I Enjoy JabRef
Enjoy your study in Hopkins!
Rongheng Lin An introduction to BibTeX and JabRef