translational informatics (idtc 289). who we are

Translational Informatics (IDTC 289)

Who we are

What we do

• Help finding new cures for old diseases using large scale data mining, machine learning, modeling, and simulation

Who we work with (on weekly basis)

Industrial collaboration

• $300K/year since 2005

• 2 clusters + other servers

What we need

• Big iron• Chilaca ($70K, 2006) – 16 nodes, 2 CPUs+2GB RAM/node (IDTC – retired)• Synergy ($60K, 2010) – 18 nodes, 8 cores+24GB RAM/node (CARC – production)• Pinon ($99K, 2012) – 33 nodes, 24 cores+64GB RAM/node (IDTC – production)• Access to other CARC clusters

• Good workstations• Most people have both Win and Linux workstations• I use daily

• 32 GB Win7 desktop ($3K)• 16 GB Linux desktop ($1.8K +$2.6K 3D graphic card)

• High speed network connections!!!• Across building• Across campus• Across the world

High speed network – across building$ time scp cbologa@pinon.health.unm.edu:cnav.oeb.gz .

cbologa@pinon.health.unm.edu's password:

cnav.oeb.gz 100% 14GB 55.8MB/s 04:26

real 4m30.818s

user 3m1.771s

sys 0m57.960s

$ time scp cnav.oeb.gz cbologa@pinon.health.unm.edu:

cbologa@pinon.health.unm.edu's password:

cnav.oeb.gz 0% 12MB 0.0KB/s - stalled -^C

real 9m51.847s

user 0m0.276s

sys 0m0.036s

High speed network – across campus[cbologa@pinon ~]$ time scp cbologa@tudor.alliance.unm.edu:work/cnav/cnav.oeb.gz .

cbologa@tudor.alliance.unm.edu's password:

cnav.oeb.gz 100% 14GB 8.5MB/s 29:06

real 29m14.343s

user 3m13.421s

sys 2m1.670s

[cbologa@pinon ~]$ time scp cnav.oeb.gz cbologa@tudor.alliance.unm.edu:

cbologa@tudor.alliance.unm.edu's password:

cnav.oeb.gz 1% 250MB 0.0KB/s - stalled -^C

Killed by signal 2.

real 9m28.622s

user 0m2.310s

sys 0m0.837s

Research Network

• We really need it• We do not want to slow down Netflix and YouTube users with our big

files

• THANK YOU