large scale scanning of metabolites in ims-chromatograms ......large scale scanning of metabolites...

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Large Scale Scanning of Metabolites in IMS-Chromatograms

* Korea Ins tute of Science and Technology Europe Forschungsgesellscha mbH (KIST Europe)Campus E 7 1 - 66123 Saarbrücken - Germany

phone + 49 (0) 681 9382 229 - fax + 49 (0) 681 9382 240

h p://www.kist-europe/r_cd_jibb.htmlh p://www.kist-europe.comh p://www.kist-europe.de

Contact: PD Dr. Jörg Ingo Baumbach Head of Department Microfl uidics and Clinical Diagnos cs baumbach@kist-europe.de

Part of a IMS-Chromatogram of human breath

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S. Maddula1, K. Rupp1, J.I. Baumbach1,2

1 KIST Europe, Department Microfl uidics and Clinical Diagnos cs, Campus E 71, 66123 Saarbrücken, Germany2 B&S Analy k, BioMedicalCenter Dortmund, O o-Hahn-Str. 15, 44227 Dortmund, Germany

Acknowledgements

The fi nancial support of the Ministry of Educa on, Science and Technology (MEST) of the Republic

Korea is acknowledged thankfully. Part of the work on this paper has been supported by Deutsche For-schungsgemeinscha (DFG) within the Collabora -ve Research Center (Sonderforschungsbereich) SFB 876 „Providing Informa on by Resource-Constrai-ned Analysis“, project TB1 “Resource-Constrained

Analysis of Spectrometry Data“.

In addi on, the work was supported partly by the German Federal Ministry of Economics and Tech-

nology based on a decision of the German Bundes-tag within the project KF2368102AKO.

The authors thank K. Darwiche, U. Sommerwerck and L. Freitag among other colleagues of the Ruhr-landklinik Essen for release of the data obtained in

Essen.

ANALYTES

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ANALYTEANALYTEANALYTE

Ion mobility spectrometry coupled to a mul -capillary column

(MCC/IMS) was introduced for medical ap-plica ons including intensive care and point of care

to detect signals related to bacteria, cancer, diseases, in-fl amma on, pharmaceu cals etc.

Not only the analy cal ques ons such as sampling, sample int-roduc on and opera on are gaining signifi cance, but also various data mining opera ons are a aining increased importance. The pa-rallel evalua on of some hundreds of peaks characterized by po-

si on, volume, and considera on of monomers, dimers and trimers, and searching in databases with thousands of data

from pa ents needs standardiza on and effi cient data mining procedures. Valida on of analytes e.g.

using parallel GC/MSD measurements makes the situa on more com-

plicated.

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Actually, two diff erent so ware packages were develo-

ped with respect to visualiza on of IMS-Chromatograms and including peak iden fi -

ca on, referencing and classifi ca on with respect to large scale applica ons. The so ware package

IPHEX (by A. Bunkowski, Bielefeld, Germany) focuses on handling of data and supports manual search for peaks

and rela ons to classes of diseases including bar charts and box-and-wisker plots. On the other hand, VisualNow

(by B. Bödeker, B&S Analy k, Dortmund, Germany) focuses on automa c large scale scanning of IMS-

Chromatograms and includes prepara on of re-ports based on rank sum, box-and-wisker

plots and probability densi es of re-levance.

to detfl am

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from pamining proc

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