genome browsing
Post on 21-Feb-2016
64 Views
Preview:
DESCRIPTION
TRANSCRIPT
Genome Browsing
with the Ensembl Genome Browser
http://www.ensembl.org/
Genome BrowsersUCSC
NCBI
Ensembl
http://www.ensembl.org/
http://genome.ucsc.edu/
Ensembl Genome Browser
Human Genome
MapView
ContigView - Overview
CytoView
ContigView - Detailed view
GeneView
GeneSpliceView
GeneSNPView
GeneView → TransView/ProtView
TransView
TransView (continued)
ProtView
ProtView - Sequence
ProtView → DomainView/FamilyView
DomainView
FamilyView
ContigView → FeatureView
FeatureView
MapView → SyntenyView
SyntenyView
ContigView → MultiContigView
MultiContigView - Overview
MultiContigView – Detailed view
Other Ensembl Features
Blast searching
Data mining (Biomart)Select data based on advanced criteria (e.g.
genome location, protein domains, functional annotation, expression, orthology, etc.)
Retrieve in various formats (HTML, Excel, text)
Data downloading (FTP)
top related