can htrf technology answer to different scientific questions ? an … · 2020-07-16 · plate-forme...

Plate-forme deChimie BiologiqueIntégrative de Strasbourg

UMS 3286 CNRS-UdS

Can HTRF technology answer to different scientific

P. Villa, Avignon2013 Apr 26

Pascal Villapvilla@unistra.fr

www.pcbis.fr

Can HTRF technology answer to different scientific questions ?

An academic with industrial standards point of view

Marcel PCBIS

1997

P. Villa, Illkirch27 juin 2012

Plate-forme de chimie biologique intégrativede Strasbourg

Jean-Luc GALZI

JacquesHAIECH

Marcel HIBERT

Chemical Biology and Medicinal Chemistry

Chemical libraries

Gene

protein

HTS

Active Molecules

P. Villa, Avignon2013 Apr 26

Pharmacological tools

Drug

Candidate

QUALITY ?

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ISO 9001

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Bridge ?

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Biology Chemistry

Bridge !

P. Villa, Avignon2013 Apr 26

Consulting

• Project evaluation

• Target Identification

• Choice of Chemical

• Project evaluation

• Target Identification

• Choice of Chemical

TARGET PRODUCTION

• Expression conditions development

• Target production

• Expression conditions development

• Target production

ASSAY Develpoment

• HTS assaydevelopment

• Miniaturization• Automation• Stability, robustness

• HTS assaydevelopment

• Miniaturization• Automation• Stability, robustness

HTS

• MTS/HTS• Hit Identiification

• MTS/HTS• Hit Identiification

HIT VALIDATION

• Hit confirmation & Validation

• Analysis• RSA

• Hit confirmation & Validation

• Analysis• RSA

HIT OPTIMIZATION

Working plan

MIL

ES

TON

ES

Target producedHTS protocol

Hits identifiedRaw datas

Analyzed datas

Confirmed HitsRaw datas

Analyzed datas

• Early ADME-Tox

• Optimisation with medicinalchemists

• Secondary

• Early ADME-Tox

• Optimisation with medicinalchemists

• Secondary

OptimizedHit

P. Villa, Avignon2013 Apr 26

Chemicallibraries

• Working plan definition

Chemicallibraries

• Working plan definition

robustnesssudiesrobustnesssudies

Go/No Go steps

TIM

ING

AUDITAUDIT

Chemical LibrariesChemical Libraries

ADMETADMET

1 to 4 weeks 2 to 4 months 2 to 4 months 2 to 4 months 2 months 1 to 4 months per molecule

Chemical librariesChemical libraries

• Secondarytests

• Secondarytests

HTSHTS

Assay Model Technology Format

Cytokine secretion(TNFα, IL-1,6,8...)

Peripheral blood mononuclearcells and other cell types

ELISAHTRF

96

Nitrite oxide (NO) production

RAW cells Absorbance 96

Kinase activity detection Ser/thr kinase HTRF/Luminescence 384

Cell growthBacteria (E. coli)Eucaryotic cells

AbsorbanceConfluence measurement

9696

Cell survivalHEK293, HepG2, MCF7,Caco2, RAW, HeLa, HL-60, U937, your cells...

AbsorbanceLuminescence

96 / 384 /1536

Cell death Caspase activity luminescence 96 and 384

P. Villa, Avignon2013 Apr 26

- Aggregation- Size measurement

Soluble protein Dynamic Light Scattering (DLS) 96 and 384

Calcium fluxGPCR Calmodulin

Fluorescence 96 and 384

Cyclic AMP CellsLuminescenceHTRF

96 and 384

Tissue regeneration (scratch wound)

Cell lines Confluence measurement 24

Membrane receptor Binding

GFP fused GPCR expressing HEK293

FRETHTRF

96

Molecular Binding Soluble protein Anisotropy 96 and 384

Permeability Caco2 Cell monolayer 24

Your favorite assay Your model Compatible with our apparatus 96-384

Preclinical ADME

• permeability• plasmatic protein binding• metabolism: plasma, liver

Physicochemical Properties

• Solubility• Log D

TechMed

P. Villa, Avignon2013 Apr 26

• Log D• CHI• pKa• Chemical stability

In vivo Pharmacokinetics

• BBB• Bioavailability

Cytotoxicity

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Microfluidic screening platform

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The platform is built, functional and installed in the PCBis screening platform (Illkirch)12

Compound Library

Primary HTS1 Point, 1 Concentration

Confirm Positives

Quantitative HTSCurrent and future HTS processes

Current Droplet-Based Microfluidics

P. Villa, Avignon2013 Apr 26

Lead Chemical Series Enter Compound

Optimisation Programs

Confirm Positives2 Points, 1-2

Concentrations

Measure IC50s2 Points, 8 Concentrations

13

Compound Library

Primary HTS1 Point, 1 Concentration

Confirm Positives

Quantitative HTSCurrent and future HTS processes

Current Droplet-Based Microfluidics

P. Villa, Avignon2013 Apr 26

Lead Chemical Series Enter Compound

Optimisation Programs

Confirm Positives2 Points, 1-2

Concentrations

Measure IC50s2 Points, 8 Concentrations

14

EGFP

Liss

hv1 (510 nm)hv (470 nm)

hv2 (590 nm)Energy Transfer

ligand

Liss

Generic assay

FRETFRET--basedbased bindingbinding assayassay

JL GalziM Hibert

P. Villa, Illkirch28 janv 2013

Plate-forme de chimie biologique intégrativede Strasbourg

ligand

Liss

HEK293

EGFP

T-R

hv1 (510 nm)hv (470 nm)

hv2 (590 nm)Energy Transfer

Generic assay

FRETFRET--basedbased bindingbinding assayassay

JL GalziM Hibert

P. Villa, Illkirch28 janv 2013

Plate-forme de chimie biologique intégrativede Strasbourg

ligand

T-R

HEK293HEK293

Example : orphan RCPG

APJ

JL GalziM HibertD Bonnet

P. Villa, Illkirch28 janv 2013

Plate-forme de chimie biologique intégrativede Strasbourg

Iturrioz et al, FASEB 2010Collaboration C Llorens-Cortes, College de France

Free fluorescent Ligand

(from fluorescent chemical library)

Depolarizedlight

FastFast rotationrotation

Excitation

Fluorescence Fluorescence polarizationpolarization

Binding assay for soluble protein

P. Villa, Illkirch28 janv 2013

Plate-forme de chimie biologique intégrativede Strasbourg

Excitation

Bound fluorescent Ligand

Polarizedlight

Slow RotationSlow Rotation

soluble Protein + fluorescent chemical library � fluorescent probe

� Step 1: assay development :

� Step 2: using the assay (HTS: competition)

Strategy

P. Villa, Illkirch28 janv 2013

Plate-forme de chimie biologique intégrativede Strasbourg

Protein + fluorescent probe + chemical library

� Hit

Blood from donors

PBMC purification

Cell culture 24h

compoundsPBMC+/- LPS

Cytokine detection

Cell Supernatant

P. Villa, Avignon2013 Apr 26

Cell survival test(toxicity)

Active compounds

Cytokine detection

Hits

non-toxiccompounds

Blood from donors

PBMC purification

Cell culture 24h

compoundsPBMC+/- LPS

Cytokine detection

HTRF kit

P. Villa, Avignon2013 Apr 26

Cell survival test(toxicity)

Active compounds

Cytokine detection

Cell Supernatant

Hits

non-toxiccompounds

Method Classical / ELISA

HTRF Gain obtained

Time 3 days 1,5 day Half time

P. Villa, Avignon2013 Apr 26

Throughput 160 cpds > 1000 cpds X 5

Search for Vasopressin agonists

• GPCR (Vasopressin 1A receptor)

• HTRF: Tag-Lite (Cisbio)

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Cell labelling Seeding into 384-well plates (10000 cells / well

(10 µl)

Compounds 10 µM(5 µl)

fluorescent igand1 nM (5 µl)

readingExc : 337 nmEm1 : 615 nmEm2 : 665 nm

METHOD: HEK cells; V1A terbium cryptate labelled

P. Villa, Avignon2013 Apr 26

ABCDEFGHIJKLMNOP

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24

Cells + SR49059 + fluo ligand

Cells + Buffer +f luo ligand

Buffer + Buffer + Buffer

Cells + Buffer + Buffer

ANALYSIS

Emission 615 nm (Plate 01) Emission 665 nm (Plate 01)

Ratio Em 665 nm / Em 615 nm (Plate 01)

02000400060008000

1000012000

tampon cellules seules

cellules + ligand

cellules + SR + ligand

0

500

1000

1500

2000

tampon cellules seules

cellules + ligand

cellules + SR + ligand

6080

P. Villa, Avignon2013 Apr 26

Pourcentage of inhibition :

Z’ :

0204060

cellules seules cellules + ligand cellules + SR + ligand

(cells + ligand) – (cells + ligand + compound)

(cell + ligand) – (cells)X 100

Exemple : 100 % ’inhibition withSR49059 (Plate 01)

3 x [(SD cells + ligand) + (SD cells + ligand + compound)]

(Meancells + ligand) - (Mean cells + ligand + compound)1 - Exemple : Z’=0,76 (Plate01)

Results

6508 molecules tested: 121 hits (Z’ > 0,7)

37 hits showed antagonist activity with more than 50% of inhibition of the Ca2+

response at 10 µM.

We focused on 6 out of them and performed dose-response validation curves.

P. Villa, Basel2012 sept 26

Search for Msk-1 inhibitors

• Enzymatic assay (kinase)• Kit HTRF KinEASE

HTRF-MSK1

MSK1 full length

Biotinilated substrateAntibody

labeled with Eu3+-cryptate

Streptavidin- XL665

337nm

HTRF kinEASE™ (CISBIO)

Choice of the substrate: STK S3

Kinase assay

Results

7120 compounds tested: 55 hits (Z’ > 0,75)

5 hits showed inhibitory activity with validated with another technology (luminescence-based).

.

LPS 02-10 D09 LPS 01-13 D08

P. Villa, Avignon2013 Apr 26

LPS 02-10 D09

0.1 1 10 1000

25

50

75

100

125

IC50 = 4.83 +/- 0.36 µM

Log [composé] (µM)

% in

hibi

tion

LPS 01-13 D08

0.1 1 10 1000

25

50

75

100

IC50 = 2.83 +/- 0.48 µM

Log [composé] (µM)%

inhi

bitio

n

Platform of Chemical Biology(UMS 3286 CNRS-UdS):

Biology/engineering

Sophie GIORIAAdeline ObrechtChristel VALENCIARaphael CALBRIXYannick BECKAnnick MARIN

Chemistry

Bruno DIDIER (& LIT)

Laboratory of Therapeutic Innovation(UMR 7200 CNRS-UdS)

Chemistry

Marcel HIBERTDominique BONNET

Biology

Nelly FROSSARDSimona NEMSKA

Medalis project (Cancer & inflammation)

P. Villa, Avignon2013 Apr 26

Bruno DIDIER (& LIT)Claire MARSOL (& LIT)Pascale BUISINE (& LIT)

ADME

Patrick GIZZI (& BSC)François DAUBEUF (& LIT)

Medalis project (Cancer & inflammation)

Andrew GRIFFITHSRaphael CALBRIXYannick BECKAnnick MARIN

Laboratory of Biology & Cellular Signalisation(UMR 7242 CNRS-UdS)

Jean-Luc GALZI

P. Villa, Avignon2013 Apr 26

Palace of Popes

François 1 er from Cisbio

P. Villa, Avignon2013 Apr 26