adf2007.01 the universal density functional package for chemists
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ADF2007.01The universal density functional
package for chemists
Prof. Mauro Stener (Trieste University)stener@univ.trieste.it
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
Outline
• General intro DFT
• ADF overview– Application areas– Technical features
• Recent developments ADF– New functionality
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
Hierarchy of Computational Methods
• Ab initio quantum chemistry (MP2, CC, CI)– Max. 10 atoms, systematic improvements, accurate
if HF is good starting point!
• Density functional theory (DFT)– Typically 100 atoms, accurate if Exc reliable– Handles “difficult” systems without problems
• QM/MM – Typically 10,000 atoms – DFT accuracy at active site, environment effects included
• MM or MD (force fields) – Fast, but inaccurate, no bond-breaking etc.
Walter Kohn
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
Density Functional Theory (DFT)
• Nobel prize Walter Kohn 1998 in chemistry(!)• Electron density is basic quantity
• Exchange and correlation effects included through approximate Exc [] : (meta-) GGA’s, hybrid functionals
• Successful applications:
• equilibrium geometries, binding energies
• molecular properties accessible: IR, NMR, ESR, UV/Vis, CD, ….
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
DFT: the Kohn-Sham (KS) equations
• ADF solves the KS equations for molecules
iiiKSH
KS HamiltonianMolecular orbitals
Orbital energies
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
DFT: the Kohn-Sham (KS) equations
iiiKSH
XC
Nucl Nucl
NuclKS
Ed
ZH '
'
'
2
1 2 rrr
r
Rr
occupied
ii
2Electron densityExchange-correlation energy functional
APPROXIMATED!
Must be properly chosen!
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
DFT: the Kohn-Sham (KS) equations
• In ADF molecular orbitals are expanded according to LCAO
• A basis set must be chosen
k
ikki c ,rr
Basis functions: must be properly chosen!
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
ADF developers• Baerends group, Amsterdam (1973 – now) • Ziegler group, Calgary (1978 - now)• Many other academic groups• SCM:
– Spin-off Baerends group– Coordinate developments– User & developer support– GUI development– Implement what users want ..
Tom Ziegler
Evert-Jan Baerends
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
Application areas for ADF • Whole periodic table• Types of systems:
– Molecules in gas phase (ADF)– Solvated molecules (e.g. COSMO)– Active site in proteins (QM/MM)– Polymers, slabs & surfaces, solids (BAND)
• Applications in chemistry & materials science• Popular application areas:
– heavy element and transition metal compounds– homogeneous and heterogeneous catalysis– spectroscopy, molecular properties– Chemical analysis: energy decomposition, fragment orbitals
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
• Accurate, tunable numerical integration scheme1 • No pseudopotential or ECP approximations needed• Stable SCF convergence for transition metal compounds• Modern exchange-correlation functionals• Slater Type basis sets …
Accuracy of ADF
1: G. te Velde and E. J. Baerends, J. Comput. Phys. 99 (1), 84 (1992)
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
Basis Sets in ADF: Slater Orbitals
• Benefits of Slater type basis sets: – nuclear cusp and correct asymptotic behavior
– fewer Slaters than Gaussians needed
• BAND: numerical orbitals and Slaters• ADF has basis sets for every situation:
– Whole periodic table: Z = 1 - 118
– frozen core and all-electron
– Relativistic and non-relativistic (ZORA)
– SZ, DZ, DZP, TZP, TZ2P, QZ4P (basis set limit)
– Even-tempered, diffuse
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
1. LCAO formulation (STO basis set)
2. Numerical integrals
3. Density fitting
k
kiki Crr
k
kakkikai OwO rrr
n
nn faocc
iiiin '~*
r
rdan2~min:
ADF: numerical techniques
Improved Slater type basis sets
0
0,2
0,4
0,6
0,8
1
1,2
1,4
1,6
Av. erro
r in
bo
nd
en
erg
y (
eV
)
DZ DZP TZP TZ2P QZ4P
Old vs new Slater type basis sets
Decreased basis set errors (test on 200 diatomics)
E. van Lenthe and E.J. BaerendsJournal of Computational Chemistry 24 (2003) 1142
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
0
5
10
15
20
25
30
35
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45
50
Err
or
(kca
l/mo
l)
VS98 PKZB BmTau1 KCIS revPBE PW91
Av. err.
Max. err.
(Meta) GGAs
Exc performance G2 test set
Av. err.
Max. err.
Modern meta-GGA and hybrid Exc functionals
Approx. 50 Exc functionals evaluated in single shot
Analysis with ADF• Fragment analysis• Bond energy decomposition
– Electrostatic interaction– Pauli (exchange) repulsion– Orbital interactions
• Advanced charge density analyses: Voronoy, Hirshfeld, Nalewajski bond orders
• Use of full molecular symmetry• Third-party analysis software:
NBO
1: Bickelhaupt & Baerends, Rev. Comput. Chem. 2000, 15, 1.
ADF speed
C. Fonseca Guerra, J.G. Snijders, G. te Velde, E.J. Baerends; Theor. Chem. Acc. 99 (1998) 391
•Linear scaling techniques used•Density fitting (atom-pair based)•Efficient in parallel•Symmetry
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
Functionality of ADF• Energetics, Potential Energy Surfaces
– Single point, geometry optimization, transition state search, analytic frequencies, thermodynamics
– Tracing of reaction path (IRC)
– Computation of any electronic configuration
• Spectroscopic properties– NMR, EFG, EPR, Raman, IR, hyperfine interactions,
UV/Vis, CD, ORD, VCD, core properties…
• Bond energy analysis• Periodic structures treated with
comparable method (BAND)
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
Model Hamiltonian options• State-of-the-art xc functionals
– potential: LDA, GGA, GRAC1, SAOP2, hybrids– energy: LDA, GGA, meta-GGA, and hybrid energy functionals
• Spin: restricted or unrestricted• Relativistic effects
– scalar approximation: ZORA (superior to Pauli) – spin-orbit (double-group symmetry)
• Environment– Solvent: COSMO, QM/MM, DRF, Frozen density embedding – Protein: QM/MM
1: Schipper et al., J.Chem. Phys. 112 (2000) 1344-13562: Grüning et al. J.Chem. Phys. 114 (2001) 652-660
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
Spectroscopic properties
• Fast Raman intensities• Spin-orbit effects in Time-dependent DFT • Vibrational Circular Dichroism
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
Potential Energy Surface - improvements• MO6 class of xc energy functionals implemented (2007)• SCF convergence trouble-shooting (2006 & 2007)• Hybrid functionals during SCF (2006)• Analytic frequencies at GGA level (2006)• Improved Optimizer (2007)• Transition state search improvements (2007)• Frequency scan also after analytical frequencies (2007):
to remove doubt on imaginary frequencies • Spin-orbit gradients (2007):
geometry optimization, TS, numerical frequencies
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
SCF convergence trouble-shooting• Typical problematic systems for SCF convergence
– Many close-lying energy levels around HOMO and LUMO• Certain lanthanides with open-shell f-electrons
• Molecules with multiple transition metals, metal clusters
• New methods (ADF2006):– Electron smearing with stepwise reduction of smearing parameter
– Averill-Painter method with gradual change in (fractional) occupations
• ADF2007: NEWDIIS – improved DIIS implementation?
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
ADF2006: Hybrid functionals during SCF
• Uses “energetic fit” (Prof. Handy et al.) with additional efficiency refinements
• Provides:– orbitals– orbital energies– (some) molecular properties [ESR] with hybrids
• Gradients with hybrids not yet available
E. van Lenthe, unpublished
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
2006: Analytic frequencies at GGA level• Important for IR spectra and classification stationary
point on PES (minima, TS)• Frequency calculations time-consuming• ADF2006 analytical implementation (CPKS)
– Four times faster than numerical frequencies
• Timing example– 105 atoms, DZ basis, “accint” 3– 128 Itanium2 1.6 GHz cores– 2.7 hours wall-clock time
S. K. Wolff, Int. J. Quantum Chem., 2005, 104: 645
ADF scaling on SGI hardwarePtSD
0
1
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9
10
32 64 96 128
Number of Cores
Calc
ula
tio
ns p
er
day
Altix XE 210 (X5160 3.00GHz) Altix XE 310 (X5355 2.66) Altix 4700 (Itanium 2 1.6 GHz)
Large frequency calculation scales up to 128 coresBest scaling with Itanium2, quad-core and dual-core Xeons also OKRecently scaling improved further (development version)
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
Improved geometry optimizer• Strong coordinates, 30 organic molecules
Optimizer Average #steps to convergenceADF2006 7.4ADF2007-cart 7.3ADF2007-delocal 6.1
• Weak coordinates, 18 weakly bound systems– ADF2006 41.5– ADF2007-cart 15.5
– ADF2007-delocal 9.8• Improvements largest for strict convergence
criteria, weakly bound, and floppy systems
Swart, Bickelhaupt, Int. J. Quant. Chem. 2006, 106, 2536
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
Technical: Parallel Windows & HP-MPI
• Parallel Windows version:•Impressive speed on quad-core•Limited speed-up from 2 to 4 due to memory bandwidth
•HP-MPI message passing library •Supports many interconnects•no recompilation needed•included in ADF distribution•performance improvement
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
Some non-confidential future plans ..
• 3D-RISM, solvent model (Gusarov, Kovalenko, Ziegler)• DFTB (DF Tight-Binding), fast DFT-based semi-
empirical method• Magnetic Circular Dichroism property• Hybrid TDDFT & NBO analysis properties (Autschbach) • Python scripting, combine with other codes / methods• Meta-GGA’s in BAND• Speed-ups large ADF jobs and NMR calculations
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
Thank you for your attention!
Questions now?
Free 30-day trial available at www.scm.comQuestions outside presentation to: info@scm.com
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
ADF2006: Spin-orbit splitting in excitations
Double-group symmetry usedShows split up in UV/Vis spectra due to spin-orbit couplingImportant for optical spectra of heavy elements
F. Wang, T. Ziegler, E. van Lenthe, S.J.A. van Gisbergen, and E.J. Baerends, Journal of Chemical Physics, 2005 122: p. 204103183. F. Wang, and T. Ziegler, the Journal of Chemical Physics, 2005 123: p. 194102
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
Transition State search improvements
• Nudged Elastic Band– HCN example in ADF now converges in 9 steps (was 38)– End points optimized at same time (minimizations)
• Partial Hessian– Improves (semi-empirical) Hessian guess, e.g. molecule on
metal surface– Difference between convergence and non-convergence– Still considerable speed-up for less critical cases
16 April 2008ADF workshop at CINECA
ADF overview http://www.scm.com
Environment effects (2)Frozen-density embedding, subsystem DFT
• “DFT in DFT”, QM/QM • One active site, multiple frozen sites• Efficient for large systems• Solvent effects on spectroscopic
properties studied
• Original implementation by Wesolowski
• More recent work in ADF by Jacob, Neugebauer, Visscher
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