almtech overview - unece€¦ · almtech overview graham gardner this project is supported by...
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ALMTech Overview
Graham Gardner
This project is supported by funding from the Australian Government Department of Agriculture and WaterResources as part of its Rural R&D for Profit programme in partnership with Research and DevelopmentCorporations, Commercial Companies, State Departments and Universities.
Outline
• ALMTech overview
• DEXA update
calibration/repeatability
auditing
cut wt prediction
eating quality prediction
ALMTechAdvanced Livestock Measurement
Technologies project
Predict quality and amount of final product
Conception Live Animal Carcase Retail Cuts Cooked Product
ValueValueValueValue
Deliverables!
Predict quality and amount of final product
Conception Live Animal Carcase Retail Cuts Cooked Product
Hyperspectral
Synergy with Automation
ValueValueValueValue
LMY:
Eating Quality:3D
Im
agin
g
DEXA3D Imaging
MIJ camera
Deliverables!
Deliverables!•Predict quality and amount of final product
Conception Live Animal Carcase Retail Cuts Cooked Product
Synergy with Automation
ValueValueValueValue
LMY:
Eating Quality:
Hyperspectral NIR
DEXA 3D Imaging3D Imaging
Commercialise 1 automated offal sorting tech
Commercialise DEXA(5 lamb, 1 beef abattoirs)
Commercialise Porkscan Mk2(2 pork abattoirs)
Commercialise cameras(2 Beef, 2 Lamb abattoirs)
Commercialise 3D imaging(2 beef feedlots)
Standardised Calibration Systems
ICWG(industry calibration working group)
•Predict quality and amount of final product
Conception Live Animal Carcase Retail Cuts Cooked Product
ValueValueValueValue
EnhancedBeef MSA
Cuts-basedLamb MSA
NewBreeding
Values
EnhancedProducerFeedback
Systems toimprove
compliance
Cut wtprediction
systems
Profit functionsto optimisecarcase use0
0.02
0.04
0.06
0.08
0.1
0.12
10 15 20 25 30 35
$
Benchmarkingsystems
0
0.02
0.04
0.06
0.08
0.1
0.12
10 15 20 25 30 35
Deploy algorithmsto enable
value based pricing(2 abattoirs)
Data to geneticand industry
databases(10 supply chains)
Commercialise3 new EBVs Support roll-out of
lamb MSA Mk2(2 supply chains)
Deliverables!
Timeline – LMY Devices
Lamb
Beef
50%
100%
100%0%
0%
Liv
e
Beef
Lamb
Beef
Lamb
Lamb
Pork
Pork
Scan
0%
0%
50% 100%
100%50%
Ca
rca
se
DE
XA
3D
Im
agin
g
Beef
0% 50% 100%
0% 50% 100%
DE
XA
3D
Im
agin
gM
icro
wave
Lamb
0% 50% 100%
Beef
Beef
E+
VB
CC
-3Lamb
Beef
Mic
row
ave
DEXA
2D X-Ray for driving robots
Nucleus Flock/DEXA
0
5
10
15
20
25
30
35
40
45
10 15 20 25 30 35 40
GR
Tis
sue
De
pth
(m
m)
Hot Standard Carcase Weight (kg)
Nucleus Flock Kill 6 (30/9)
Nucleus Flock Kill 5 (9/9)
Nucleus Flock Kill 4 (5/8)
Nucleus Flock Kill 3 (29/7)
Nucleus Flock Kill 2 (22/7)
Nucleus Flock Kill 1 (24/6)
R2=0.92, RMSE=1.31
DEXA predicting CT Fat%
Gardner et al., 2018. Meat Science.
Lamb DEXARepeatability
Immediate Repeatability
Scan Run - Experiment 1
1 2 3 4 5
23.2a 23.4a 23.2a 23.5a 23.4a
Mean Fat % predictions by scan runDiffering superscript denotes significant difference (P<0.01)
Scan carcases 5 times in a row
Connaughton et al., 2019.
CalibrationAdjust for synthetic phantom & air
0
5
10
15
20
25
30
35
0 5 10 15 20
Fat
% P
red
icti
on
Fat % Prediction of Wednesday Group
Data Before Adjustment
10
12
14
16
18
20
22
24
26
28
30
10 15 20 25 30
Fat
% P
red
icti
on
Fat % Prediction of Wednesday Group
Data After Adjustment
Wednesday Group
Thursday Group
Friday Group
Repeatability between days
Connaughton et al., 2019.
30
40
50
60
70
80
90
30 40 50 60 70 80 90
Bro
okl
yn P
red
icti
on
(%
Le
an)
Bordertown Prediction (% Lean)
Lean % Prediction with no calibration
Repeatability between sites
Connaughton et al., 2019.
30
40
50
60
70
80
90
30 40 50 60 70 80 90
Bro
okl
yn P
red
icti
on
(%
Le
an)
Bordertown Prediction (% Lean)
Lean % Prediction After Phantom Calibration
Repeatability between sites
Connaughton et al., 2019.
Auditing
DEXA
Validation/AuditingAcquire imagesFull system
CalibrationAdjust forSyntheticPhantom
Threshold bone Convert to Tissue% Convert to CT lean, fat, bone
Sets air attenuation at 4095
CalibratedImage
High energyLow energy
ln(ILow/AirAtten)
ln(IHigh/AirAtten) R =
Calc. R values
Wt’d pixel depth
Company Specific Algorithm
Clearfield
AirAtten
CalibratedImage
Validation/AuditingAcquire imagesFull system
CalibrationAdjust forSyntheticPhantom
Threshold bone Convert to Tissue% Convert to CT lean, fat, bone
Sets air attenuation at 4095
CalibratedImage
High energyLow energy
ln(ILow/AirAtten)
ln(IHigh/AirAtten) R =
Calc. R values
Wt’d pixel depth
Company Specific Algorithm
Clearfield
AirAtten
CalibratedImage
Synthetic Phantom
Auditor Calibration point
Calibration point
Validation/AuditingAcquire imagesFull system
CalibrationAdjust forSyntheticPhantom
Threshold bone Convert to Tissue% Convert to CT lean, fat, bone
Sets air attenuation at 4095
CalibratedImage
High energyLow energy
ln(ILow/AirAtten)
ln(IHigh/AirAtten) R =
Calc. R values
Wt’d pixel depth
Company Specific Algorithm
Clearfield
AirAtten
CalibratedImage
Synthetic Phantom
Auditor
Calibration point
Routine auditingensures calibrated image
Validation/AuditingAcquire imagesFull system
CalibrationAdjust forSyntheticPhantom
Threshold bone Convert to Tissue% Convert to CT lean, fat, bone
Sets air attenuation at 4095
CalibratedImage
High energyLow energy
ln(ILow/AirAtten)
ln(IHigh/AirAtten) R =
Calc. R values
Wt’d pixel depth
Company Specific Algorithm
Clearfield
AirAtten
CalibratedImage
Calibration point
CT validation required when:1. New DEXA hardware
2. Altered company algorithm3. Disputes
Traits manual
Estimating cut weight using DEXA
Predicting round & shortloin wtusing HCWT plus DEXAfat value
RMSE = 0.054kg
RMSE = 0.105kg
DEXA
Carcase Calculator rework
CT Scanning
DEXA Lean Value = 52
DEXA Lean Value = 48
DEXA Lean Value = 59
Wt & DEXA & EQ
Optimise carcase usage
Bone out cost
Cut Retail Values
Cut wt by retail value
Adj for cut market volume
Optimised profitCarcase descisions to
optimise profit
$ $ $$$
Characterisecarcase grades
29
Is DEXA relevant to MSA?
Lumbar DEXA R STDEV
Lean Meat Yield%
DEXA predicts Overall Liking
10.3 eating
quality units
8.3 eating
quality units
80 lambs 200-300 days old
Anderson et al., 2019. ICOMST
Lumbar DEXA R STDEV
Lean Meat Yield%
DEXA predicts Overall Liking
10.3 eating
quality units
8.3 eating
quality units
80 lambs 200-300 days old
Independent of LMY%IMF%
Anderson et al., 2019. ICOMST
32
Meat Standards Australia eating quality model
Is DEXA relevant to MSA?
Carcase Wt
IMF
Rib Fat
Maturity
33
Meat Standards Australia eating quality model
Is DEXA relevant to MSA?
Summary
• ALMTech – 3 more years to
accelerate measurement tech
• DEXA calibrated against CT
• Industry system for auditing
• Predicts cut wt & EQ