afterlife of bacterial cell debris: peptidoglycan in the ... · • enterobacteria, coliforms,...
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Afterlife of bacterial cell debris: Peptidoglycan in the gastrointestinal tract Christian Nyffenegger, PhD
Research Scientist, Animal Health and Nutrition Novozymes A/S, Denmark
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1. The problem: dead bacteria and cell debris in the gut
2. Solving the problem: using a novel microbial muramidase
3. How the solution works
Outline
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Nikolai Fedorovich Gamaleia (1859-1949)
• Worked in Pasteur's lab in 1886
• Later joined Ilya Mechnikov
• studied the effect of injection of dead bacteria in rabbits and sheep
Life after death
Matthew J. Kluger 2015 Fever: Its biology; Evolution, and Function, Jean-Marc Cavaillon and Mervyn Singer Inflammation 2018 Wiley-VCH Verlag GmbH & Co
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Living Dead Debris
Dead bacteria
(whole cells + fragments)
Live bacteria +
Afterlife of bacterial cell debris
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Living Dead Debris
A holistic view of microbiota: includes dead bacteria and cell debris
Dead bacteria
(whole cells + fragments)
Live bacteria +
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The problem: dead bacteria and bacterial cell debris in the gut
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All parts interact with the host cells in the GIT
Feedstuffs Sep 26, 2018 Understanding threats to poultry performance, Nature Metabolism Jan 2019, Vol 1 34-46
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Peptidoglycan (PGN): a major component of all bacteria
• PGN dry weight:
• Gram- 10%
• Gram+ 80-90%
• Unique biopolymer only found in
bacterial cell wall
• Provides structure, shape and
counteracts osmotic pressure
• Abundant in the gut
Gram- bacterium
Gram+ bacterium
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Peptidoglycan: a complex polymer forms the bacterial cell wall
Thick peptidoglycan
Plasma membrane
Structure
Gram+ bacterium
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Peptidoglycan: a complex polymer forms the bacterial cell wall
Thick peptidoglycan
Plasma membrane
N-acetyl-
glucosamine
N-acetyl-
muramic acid L-alanine D-glutamate L-lysine D-alanine
Peptide bridge: can vary depending on bacterial species
Glycan strand
Structure
Gram+ bacterium
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Solving the problem
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Using a novel microbial muramidase to cleave PGN
Gram+ bacterium
Thick peptidoglycan
Plasma membrane
N-acetyl-
glucosamine
N-acetyl-
muramic acid
Site of muramidase
catalysed hydrolytic
cleavage
L-alanine D-glutamate L-lysine D-alanine
Peptide bridge: can vary depending on bacterial species
Glycan strand
Structure
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A novel microbial muramidase
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A novel microbial muramidase
• GH25
• TIM-barrel
• Long groove in C-terminal face
• Catalytic site with highly negative
electrostatic potential
• DIE motif
• Gastric and heat stable
• Hydrolyses peptidoglycan (PGN)
• β-1,4-N-acetylmuramidase activity
• Lack of apparent antimicrobial potency
• The only solution targeting dead and
decomposing bacteria
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How the solution works
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The novel microbial muramidase degrades peptidoglycan from relevant gut bacteria
* Significant p < 0.05
*
*
*
* *
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Microscopy of intact and hydrolyzed peptidoglycan
Enterococus gallinarum
No enzyme
With enzyme
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The novel microbial muramidase depolymerizes peptidoglycan into smaller fragments
Living Dead Cell fragments Hydrolysates
Insoluble Soluble
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Novel microbial muramidase hydrolyzes PGNs
PGNs accumulate in the intestinal
tract
“Good” bacteria feeds on smaller
PGN debris
Nutrients are now able to be absorbed
Performance improves from better nutrient
absorption
Novel microbial muramidase: Impact on animal physiology
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In vivo data of a novel microbial muramidase
Muramidase supplementation in broiler chicken diet
• Delivers consistent effects in more than 50 in vivo
studies performed globally.
• Increases body weight gain
• Improved utilization of feed (improved FCR)
• Increased digestibility of key nutrients
• A range of other beneficial effects
• Can save globally 9 million tons of CO2 equivalents.
…
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Effects of the novel microbial muramidase can be measured throughout the GIT
21 Source: ME-08/18VN E. Perez Calvo & R. Aureli
• Male Cobb 500, 35 days old
• Muramidase dose: 45 000 LSU(F)/kg
• Diet type: Corn-SBM- wheat (15%) + ionophore as coccidiostat
CROP JEJUNUM
Control Muramidase Control Muramidase
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• Muramidase enhances gut functionality by cleaning up bacterial debris from GIT
• Muramidase only degrades cell fragments, leaving live bacteria unaffected
• Muramidase catalyzed PGN degradation can be measured in vivo
The novel microbial muramidase - first of its kind
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Further informations about the novel microbial muramidase
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Lack of anti-microbial potency confirmed in vivo and in vitro
In vivo With 10X dose
In vitro With 8X dose
No significant reduction in caecal bacterial counts
• Total caecal aerobes and anaerobes (CFU/g)
• Enterobacteria, Coliforms, Lactobacilli (CFU/g)
No detection of antimicrobial potency in MIC assay
• MIC (Minimal Inhibitory Concentration) assay is the industry-standard
measurement of antimicrobial potency
• 7 reference strains recommended by the European Food Safety Authority
• 30 field strains isolated from poultry
Regul Toxicol Pharmacol. 2017 Oct;89:57-69, IPSF 2018 poster 271
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Conformational selection: “Smart” muramidase distinguishes between peptidoglycan conformations
Trends Microbiol. 2010 Feb;18(2):59-66
Live cells
Stretched due to pressure inside live cell
(Turgor pressure: up to 20 atm)
Dead cells
Relaxed due to lack of pressure from live cell
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Monomer quantification
Chemical hydrolysis to single muramic acid sugars
glycan strands
peptide bridges
5 M hydrochloric acid (pH<0)
for 24 hours at 100°C
Quantification of muramic acid
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Soluble muramic acid
Total muramic acid
Novel method to quantify PGN degradation in digesta samples through muramic acid analysis
Ratio =
Acid hydrolysis & measurement of
muramic acid
Acid hydrolysis & measurement of
muramic acid
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Muramidase vs hen egg white lysozyme
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Hen egg white lysozyme and other higher animals
GH22
C-like lysozyme (c for chicken)
Hydrolysis of 14 beta linkage
Found in milk, saliva, mucus, tears, egg-white
First enzyme, structure was solved in 1960ies
Classical Koshland retaining mechanism containing covalent glycosyl intermediate
Side activity on chitin (also 14 beta linkage)
Glu35=cat residue, Asp52 catalytic nucleophile in large cleft
127 aa, 4 disulphide bonds, 5 helical regions (40% of aa), five regions of beta sheet with rc and beta turns
Structure shard with GH19 (chitinases), GH23(lysozymes (goose)), GH124 (cellulases), GH134 (mannanases)
~130 aa
Fungal muramidase
GH25
“Chalaropsis”-like lysozyme
Hydrolysis of 14 beta linkage
β-1,4-N-acetylmuramidase activities
Likely retaining
Mechanism=neighboring group participation
Structure unrelated to GH22 etc.
TIM-barrel (eight-stranded beta barrel flanked by 6 (normally 8) alpha helices
Long groove in C-terminal face, culminating in deep whole of highly neg electrostatic potential = cat site
DIE motif (D and E cat residues, around pos 100)
~200 aa
Chicken type lysozyme =antimicrobial
Novel microbial mura- Midase =not antimicrobial
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Mechanism
Novel microbial muramidase: neighbouring group participation
HEWL-koshland mechanism