african genomics
TRANSCRIPT
African genomicsAdam S. Wilkins
The second annual Africa Genome Initiative Conference
was held earlier this year in Cairo, Egypt, taking place March
26th–29th 2004 (http://www.africagenome.co.za/2004_about/).
Its title was ‘‘Genomics and Society: the Future Health of
Africa’’. The range of topics covered, however, was consider-
ably broader than this title suggests. The coverage embraced
essentially all aspects of genetic and genomic science that are
relevant to Africa. These included various anthropological
genetic studies, reconstructions of domestic animal histories,
talks on early human history in Africa, talks on genomic and
biotechnological applications to health issues, as well as the
various ethical issues that arise from genomic and biotechno-
logical studies. This spread of subject matter may sound
almost unreasonably broad but that breadth was deliberate.
This conference series is intended to build scientific bridges
between scientists and countries both within Africa and be-
tween African and European and US scientists and, in effect,
to generate greater interest in the full spectrum of African
biological sciences and more effective science within Africa.
The first conference in the series was held in South Africa
last year and was attended by several luminaries, including
Sydney Brenner, a South African himself.
That the first two meetings were held at opposite parts of
the continent, South Africa and Egypt, is no accident. These
are the countries with the largest scientific clout in Africa. The
two scientific delegations of these countries made up the bulk
of the 200 or so participants at themeeting. The Cairomeeting
washeld atMenaHouse, inGiza, at the southernedgeofCairo
and just at the foot of the Great Pyramid of Khufu (Cheops to
the ancient Greeks). From the hotel dining room, you look out,
and inevitably upwards, at this incredible construction built
4.5 millennia ago, the biggest of the group of pyramids that,
today, are the sole remaining architecturalmonuments ofwhat
constituted the Seven Wonders of the Ancient World.
Themeeting began on a Friday evening, with a talk, ‘‘Africa
in the Age of Biology’’ by the keynote speaker, Wilmot
James, executive director of the Human Sciences Research
Council (HSRC) (Cape Town, South Africa). He began by
stressing the importance of historical memory in influencing
capabilities and actions and cited the destruction of the great
library of Alexandria as an instance in which the loss of
historical memory caused a dramatic setback to learning and
progress throughout the classical world. He contrasted this
kind of situation with that of Markov series, in which the history
of states is unimportant and what counts is only the last state.
Richard Lewontin has cited the genomeas an instance of such
an entity. Dr. James’ primary focus, however, was the set of
problems that Africa faces today and the special challenges
faced by biology and biotechnology today. The use of African
biological resources as a source of pharmaceuticals and the
vexed issue of who ‘‘owns’’ these resources andwho stands to
benefit from their commercial development is one such issue.
The disproportion between health burdens in the Third and
First Worlds and the relative expenditures on those health
burdens was another problem touched upon. Following this
opening talk for the conference, a lighter note was stuck, with
the Welcome Reception for the delegates, which featured an
entertainment involving five very attractive Egyptian belly-
dancers (an art form that considerably pre-dates the Christian
and Islamic eras).
Following this opening, the conference involved a full three
days of talks. Each day, the morning session consisted of
plenary talks, which was followed by a panel discussion
(respectively, biotechnology, human evolution and ethics).
The afternoons were devoted to four parallel sessions, on
History & Archaeology, Biotechnology/Science and Society,
and Bioethics. On the evening of the first full day, there was a
bioethics plenary talk by Garland Allen (Washington
University) titled ‘‘Genocentrism 2004’’, a history and critique
of the ideas of genetic determinism from the late 19th century to
thepresent.DrAllen sketched thedifferent contributions to this
line of thought by English, American and German scientists—
and its adverse social consequences—and the boost that the
genomeprojects of the 1990s gave to ‘‘genocentrism’’. His talk
was followed by a lively, and sometimes heated, discussion
involving the audience, about the uses and abuses of genetics
in the 20th century.
It would be impossible to give a complete accounting of the
scientific content of themeeting, given the existence of parallel
sessions, but certain themes were apparent. The ‘‘History and
Archaeology’’ talks, in fact, included archaeology proper
(including a lively plenary talk by Dr Salima Ikram of the
Egyptian Museum in Cairo, on important archaeological sites
in the Western desert of Egypt) but they also ranged more
broadly. This wider subject area encompassed, in particular,
1034 BioEssays 26.9 BioEssays 26:1034–1035, � 2004 Wiley Periodicals, Inc.
BioEssays Editorial Office, 10/11 Tredgold Lane, Napier Street,
Cambridge CB1 1HN, UK. E-mail: [email protected]
DOI 10.1002/bies.20110
Published online in Wiley InterScience (www.interscience.wiley.com).
Meetings
molecular genetic studies to reconstruct the histories of
African livestock and human population genetic studies.
Anne Muigai (International Livestock Research Institute
and Jomo Kenyatta University, Nairobi, Kenya) reviewed
molecular genetic studies on sheep in Africa. The data support
the idea that there were two points of sheep entry to the
continent, one at the Isthmus of Suez, the other the Horn of
Africa, to the east. The panel discussion of human history in
Africa dealt with the whole armoury of tools that can now be
brought to bear on this subject, from archaeology and pale-
ontological finds to molecular genetic studies and linguistics.
Martha Lahr (University of Cambridge), for instance,
discussed both the overlaps and, more importantly, the areas
of non-overlap between the different approaches but stressed
that all of the evidence is consistent with the out-of-Africa
hypothesis for the origins of Homo sapiens. Christopher
Ehret (UCLA) discussed the evidence for the existence of
four, possibly five, language families in Africa. He then
presented the results of an analysis which suggests that all
these languages trace back to an African region consisting of
the Middle Nile Basin, parts of the adjacent Ethiopian
highlands, and certain proximate areas of East Africa.
TheBiotechnologyandScienceandSociety talks dealtwith
numerous specific developments of potential economic impor-
tance for Africa—ranging from various agricultural applica-
tions to generic drugs to vaccine development. An important
general biological phenomenon was discussed in depth by
Jannie Hofmyer (University of Stellenbosch, South Africa)
and he spelled out its implications for biotechnological
research. This is the highly complex integration of biological
systems and the fact that alterations in one component often
trigger either compensatory or dysfunctional systems-level
responses. With most biotechnological approaches focussed
on single-component alterations at a time, there is a serious
possibility that many of these schemes will either fail or
perform suboptimally because of this integrated complexity.
An important subtext in many of the talks dealing with
biotechnological issues was the practical difficulties of devel-
oping them to obtain maximal benefit for Africans. It is clear
that public finance alone in Africa cannot be sufficient to
promote these developments, hence public–private partner-
ships must be, at least, part of the answer. How to generate
such partnerships was a major subject of attention. The
dilemmas presented by GMO foods were also the subject of
several talks anddebatewithin oneof thepanel discussions. In
the area of bioethics, Dr Udo Schuklenk (WITS Faculty of
Health Sciences,Gauteng, SouthAfrica) returned to the issue,
raised by Dr James, of the disproportion between Third World
health burdens and the research and health budget monies
allocated to theseproblemsasa functionof total health-related
expenditure.
Much attention was paid to the question of how to generate
more funding for scientific research and, specifically, more
research in Africa on topics and approaches that will bring
benefits to the people of the continent. One general proposal
which is gaining ground is the idea of establishing centres of
excellence. One of these already exists, namely the Bios-
ciences for East andCentral Africa (Nairobi, Kenya, http://www.
doylefoundation.org/africanbiosciences/background.htm), a
facility established with the help of aninvestment of more than
CAD$30 million by the Canada Fund for Africa through the
Canadian International Development Agency (CIDA). In
addition, several smaller institutes have been founded in
recent years, including two devoted to bioinformatics. Any
non-African delegate to the Conference could not help but be
struck by the disparity between the potential for interesting and
important genetic and molecular research in Africa and the
currently existing support levels for this research. It is ironic,
and more than a little sad, that the continent that was the
birthplace of Homo sapiens and several major civilizations,
including the one so much in evidence just outside the door of
Mena House, should be struggling so hard to establish its
place in contemporary biology.
The next African Genome Initiative conference will be held
next year in Nairobi (March 25th–28th). The conference will be
organized by a new umbrella group, the Africa Genome
Initiative, with the participation of local scientists and their
colleagues from several organisations. The latter include the
Biosciences for East and Central Africa (BECA), the Interna-
tional Livestock Research Institute (ILRI) and The Interna-
tional Center of Physiology and Ecology (ICIPE). A major
theme of this conference is going to be the problems of and
prospects for vaccine development and drug development to
benefit African societies.
As part of the African Genome Initiative, a new on-line
journal, sponsored by the HSRC, has been launched and the
first issue appeared in January 2004. Covering the world of
African genomics, the magazine is aimed at bringing together
students, teachers and scientists. (http://www.africagenome.
co.za/publications/scientist.html).
Meetings
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