a pulse epr primer
DESCRIPTION
A Pulse EPR Primer. FIDs and Echoes . ESEEM Relaxation Time Measurement 2 + 1, DEER, ELDOR EXSY. Structural Elucidation Dynamics, Distances Measurement of Long Distances Measurement of Slow Inter & Intra-molecular Chemical Exchange and Molecular Motions. Applications. Topics. - PowerPoint PPT PresentationTRANSCRIPT
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A Pulse EPR PrimerA Pulse EPR PrimerFIDs and Echoes
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ApplicationsApplications
ESEEM Relaxation Time Measurement2 + 1, DEER, ELDOR
EXSY
Structural ElucidationDynamics, Distances
Measurement of Long Distances
Measurement of Slow Inter & Intra-molecular Chemical Exchange and Molecular Motions
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TopicsTopics
The Rotating Frame
The Effect of B1
FIDs (Free Induction Decays)
FT (Fourier Transform) Theory
Spin Echoes
Relaxation Times
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Rotating FrameRotating Frame
The Axis System
x
y
z
B1
B0
M agnet
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Rotating FrameRotating Frame
The Larmor Frequency
L = - B0
B0
M0
x
y
z
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Rotating FrameRotating Frame
Linearly and Circularly Polarized Light
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Rotating FrameRotating Frame
The Rotating Frame
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Rotating FrameRotating Frame
B1 in both Frames
M0
x
y
z
B1
0
0
B0
M0
x
y
z
0
0
LabFram e
RotatingFram e
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Rotating FrameRotating Frame
Tip Angles
= - |B1| tp
M0
x
y
z
M
x
z
y
M0
x
y
z
B1
M
x
y
z
B1
M WO N
M WO FF
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Rotating FrameRotating Frame
Pulse Phases
M
x
y
z
B1
+x
Mx
y
z
B1
+y
M
x
y
z
B1
-y
M
x
y
z
B1
-x
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Rotating FrameRotating Frame
Transverse Magnetization in Both Frames
M
x
z
y
M
x
z
y
0
LabFram e
R otatingFram e
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Rotating FrameRotating Frame
Generation of Microwaves
N S
L
M
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Rotating FrameRotating Frame
Off-resonance Effects
M
x
z
y
M
x
z
y
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Rotating FrameRotating Frame
The Effective Field
B eff 02 = B 1
2 + B
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Rotating FrameRotating Frame
Sin(x)/x Behavior
10 8 6 4 2 0 2 4 6 8 10
M
M M-y 0 =
1 + ( / )12
sin 1( + (/ ) 12 )
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Rotating FrameRotating Frame
Excitation Bandwidth
-65 -60 -55 -50 -45 -40 -35 -30 -25 -20 -15 -10 -5 0 5 10 15 20 25 30 35 40 45 50 55 60 [M H z]
16 ns
32 ns
48 ns
64 ns
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Relaxation TimesRelaxation Times
Spin Temperature and Populations
M0
x x
y y
z z
M
M
x
z
y
Therm alEquilib rium
/2 Pulse Pu lse
= enantipara lle l
nparalle l
EkT
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Relaxation TimesRelaxation Times
Longitudinal Magnetization Recovery
2 4 6 8 1 0 2 4 6 8 1 0
t / T 1 t / T 1
M / Mz 0 0
-1
+ 1
/2 Pulse / Pulse
M (t) z = M 0 1- e -t/T1 M (t) z = M 0 1- 2 e -t/T1
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Relaxation TimesRelaxation Times
Effect of Excessive Repetition Times
M (SRT) z = M 0 1- e -SRT/T1
0 2000 4000 6000 8000 10000 12000 14000 16000 18000 20000 22000Tim e [ns]
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Relaxation TimesRelaxation Times
Homogeneous & Inhomogeneous Broadening
Homogeneous BroadeningThe lineshape is determined by the relaxation time. The spectrum is the sum of a large number of lines each having the same Larmor frequency and linewidth.
Lorentzian Lineshapes
Inhomogeneous BroadeningThe lineshape is determined by the unresolved couplings. The spectrum is the sum of a large number of narrower homogeneously broadened lines each having the different Larmor frequencies.
Gaussian Lineshapes
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Relaxation TimesRelaxation Times
A FID (Free Induction Decay)
M (t) -y = M e -t/T2
1
0
1
M y
1
0
1
1
0
1
1
0
1
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Fourier TheoryFourier Theory
Fourier transforms convert time domain signals into frequency domain signals and vice versa.
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Fourier TheoryFourier Theory
Time Behavior of Magnetization
M
x
z
y
Cos( t)
Sin( t)
M (t) -y = M cos( t)
M (t) x = M sin( t)
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Fourier TheoryFourier Theory
The Complex Axis System
M (t) t = M e -i t
e i = cos( ) + i s in( )
Im
Re
M
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Fourier TheoryFourier Theory
The Fourier Transform
F( ) = f(t) e -i t d t
+
-
f(t) = 1
F( ) 2 e i t d
+
-
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Fourier TheoryFourier Theory
Even functions (f(-t) = f(t) or symmetric) have purely real Fourier transforms.
Odd functions (f(-t) = -f(t) or anti-symmetric) have purely imaginary Fourier transforms.
Some Fourier Facts
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Fourier TheoryFourier Theory
An exponential decay in the time domain is a lorentzian in the frequency domain.
A gaussian decay in the time domain is a gaussian in the frequency domain.
Some Fourier Facts
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Fourier TheoryFourier Theory
Quickly decaying signals in the time domain are broad in the frequency domain.
Slowly decaying signals in the time domain are narrow in the frequency domain.
Some Fourier Facts
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Fourier TheoryFourier Theory
A Simple Fourier Transform
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Fourier TheoryFourier Theory
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Fourier TheoryFourier Theory
0 0
0
0
0 0
0 0
0 0
e - / 2 e - / 2
erf( / 2 ) 2
( + ) + 0 ( )0
( + ) - 0 ( )0
0
0
0 S in( )/
(1 /T2) + 2 2
(1 /T 2) + 2 2
1/T2
0t
0t
0t
0t
0t
e -t / T2
e - t / 2 2
(t+ ) - (t- )
cos( t) 0
s in ( t) 0
f (t) F ( ) Re Im
0 0
0
0
a)
d)
b)
c)
e)
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Fourier TheoryFourier Theory
Addition Properties
f(t) + g(t) = F( ) + G ( )
f (t) F ( )
0
0t
0 0
0
0t
0 0
0
0t
0 0
+
=
+
=
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Fourier TheoryFourier Theory
Shift Properties
0 0
0t
f (t) F( ) R e Im
0 0
0 0
0t
0 0
t
f(t - t) F ( ) e -i t f(t) F ( - ) e i t
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Fourier TheoryFourier Theory
Convolution Properties
f(t) * g(t) = f( ) g(t- ) d
+
-
* =
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Fourier TheoryFourier Theory
Convolution Theorem
f(t) * g(t) F ( ) G ( )
F( ) * G ( ) f(t) g(t)
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Fourier TheoryFourier Theory
A Practical Example
-A +A
R e
Im
0
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Fourier TheoryFourier Theory
A Practical Example
* =
Use Convolution
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Fourier TheoryFourier Theory
A Practical Example
Use Addition
cos(A t) 1+ cos(A t)1
+ =
+ =
t
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Fourier TheoryFourier Theory
A Practical Example
Use the Convolution Theorem
X =
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Fourier TheoryFourier Theory
Linewidth Effects
f (t) F ( )
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Fourier TheoryFourier Theory
Splitting Effects f (t) F( )
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Fourier TheoryFourier Theory
Field Effects f (t) F ( )
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Fourier TheoryFourier Theory
Field vs Frequency
Fie ld Sw eep
Frequency
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Fourier TheoryFourier Theory
Field vs Frequency
B 0
0 - 00 +
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EchoesEchoes
Spin Echoes
2
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EchoesEchoes
Spin Echoes
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EchoesEchoes
Spin Echoes with Inhomogeneous
Broadening
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EchoesEchoes
Phase Memory Time, TM
Echo H eight( ) e -2 /T M
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EchoesEchoes
Spectral Diffusion
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EchoesEchoes
Spin Lattice Relaxation
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EchoesEchoes
ESEEM
0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 [M Hz]
0 2000 4000 6000 8000 10000 12000 14000 16000 18000 20000 22000 24000 26000 28000 30000 32000[ns]
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EchoesEchoes
Stimulated Echo
2 2 2
t1
2 t1 t1 + 2 2 t1+ 2 t1+ 2 2 0
HahnEcho
HahnEcho
H ahnEcho
Stim ulatedEcho
R efocusedEcho
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EchoesEchoes
Effect of Pulse Lengths with Two Equal
Pulses