a new subspecies of microsnail from masungi georeserve

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PRIMARY RESEARCH PAPER | Philippine Journal of Systematic Biology DOI 10.26757/pjsb2020c14003 Volume 14 Issue 3 - 2020 | 1 © Association of Systematic Biologists of the Philippines A new subspecies of microsnail from Masungi Georeserve, Rizal, Philippines Abstract A new subspecies of microsnail, Hypselostoma latispira masungiensis subsp. nov., is described based on shell morphology and molecular characters. This new subspecies is distinguished from H. l. latispira from Baguio City, Benguet Province by having relatively larger major width size, additional apertural teeth (interpalatal plica), larger body whorl and apertural width, and clustering based on location. The collected samples from Masungi Georeserve, Rizal Province appear to be an ecophenotype as indicated by the novel site congruent to the clade separation of Masungi and Baguio H. latispira. Neighbor-joining and maximum likelihood trees also demonstrated that the two sample groups clustered separately, with bootstrap support of 84% and 78%, respectively. However, pairwise distance comparison revealed that there is only an average of 0.0131 ± 0.0126 genetic distance (99.98%) between the two populations, suggesting that they are most likely similar species; thus, the proposal of making it a subspecies. This is the first report on the new distributional record outside the type locality and a new subspecies of H. latispira. Keywords: land snail, karst, interpalatal plica, pairwise distance comparison 1 Graduate School, University of the Philippines Los Baños, College, Laguna 4031 2 Animal Biology Division, Institute of Biological Sciences, University of the Philippines Los Banos, College, Laguna 4031 3 Institute of Biology, College of Science, University of the Philippines, Diliman, Quezon City 1101 *Corresponding email: [email protected] Date Submitted: 24 February 2020 Date Accepted: 06 July 2020 Introduction The genus Hypselostoma Benson, 1856 is classified under the family Hypselostomatidae Zilch, 1959 (sensu Schileyko 1998). However, Bouchet et al. (2017) considered the family as a synonym of Gastrocoptidae Pilsbry, 1918 following Gittenberger (1973), while several studies recognized Vertiginidae (Thompson & Lee 1988; Panha 1997; Hwang 2014). Páll-Gergely et al. (2019) recognized the Hypselostomatidae. It is widely distributed throughout southern China and the Malayan peninsula, extending towards the Philippines and the Ryukyu Islands (Thompson & Auffenberg 1984; Páll-Gergely et al. 2015). Hypselostoma species are described as having depressed conic spires with an upturned or ascending last whorl and continuous peristome (Pilsbry 1918) and protrusions or teeth along the aperture (Tongkerd et al. 2004), which is of great taxonomic importance. Pilsbry (1917) provided the first monograph of this genus followed by Haas (1937) and Tomlin (1939) with additional species and subspecies described by Benthem Jutting (1949, 1950, 1962). The Philippine species were also discussed by von Moellendorff (1888), Quadras and von Moellendorff (1894, 1896), Pilsbry (1917), and Haas (1937). Common features among the Philippine group are the spiral striations on the shell and the cross orientation of apertural teeth (Pilsbry 1918). Currently, a total of eight species occur in the Philippines, with H. luzonicum Moellendorff, 1888 and H. polyodon Moellendorff, 1896 having five and two subspecies, respectively (Pilsbry 1917; Haas 1937; Thompson & Auffenberg 1984). The most recently described Philippine species is H. latispira Thompson & Auffenberg, 1984 from Baguio City, Benguet Province (Thompson & Auffenberg 1984). Thus far, it is known only from the type locality until now. In this paper, a new subspecies of H. latispira was discovered from Masungi Georeserve, Rizal Province which is more than 200 km away Harold B. Lipae 1* , Angelique L. Estabillo 2 , Ian Kendrich C. Fontanilla 3 , and Emmanuel Ryan C. de Chavez 2

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Page 1: A new subspecies of microsnail from Masungi Georeserve

PRIMARY RESEARCH PAPER | Philippine Journal of Systematic Biology

DOI 10.26757/pjsb2020c14003

Volume 14 Issue 3 - 2020 | 1 © Association of Systematic Biologists of the Philippines

A new subspecies of microsnail from Masungi Georeserve,

Rizal, Philippines

Abstract

A new subspecies of microsnail, Hypselostoma latispira masungiensis subsp. nov., is described based on shell

morphology and molecular characters. This new subspecies is distinguished from H. l. latispira from Baguio City,

Benguet Province by having relatively larger major width size, additional apertural teeth (interpalatal plica), larger body

whorl and apertural width, and clustering based on location. The collected samples from Masungi Georeserve, Rizal

Province appear to be an ecophenotype as indicated by the novel site congruent to the clade separation of Masungi and

Baguio H. latispira. Neighbor-joining and maximum likelihood trees also demonstrated that the two sample groups

clustered separately, with bootstrap support of 84% and 78%, respectively. However, pairwise distance comparison

revealed that there is only an average of 0.0131 ± 0.0126 genetic distance (99.98%) between the two populations,

suggesting that they are most likely similar species; thus, the proposal of making it a subspecies. This is the first report on

the new distributional record outside the type locality and a new subspecies of H. latispira.

Keywords: land snail, karst, interpalatal plica, pairwise distance comparison

1Graduate School, University of the Philippines Los Baños, College,

Laguna 4031 2Animal Biology Division, Institute of Biological Sciences, University

of the Philippines Los Banos, College, Laguna 4031 3Institute of Biology, College of Science, University of the Philippines,

Diliman, Quezon City 1101

*Corresponding email: [email protected]

Date Submitted: 24 February 2020

Date Accepted: 06 July 2020

Introduction

The genus Hypselostoma Benson, 1856 is classified under

the family Hypselostomatidae Zilch, 1959 (sensu Schileyko

1998). However, Bouchet et al. (2017) considered the family as

a synonym of Gastrocoptidae Pilsbry, 1918 following

Gittenberger (1973), while several studies recognized

Vertiginidae (Thompson & Lee 1988; Panha 1997; Hwang

2014). Páll-Gergely et al. (2019) recognized the

Hypselostomatidae. It is widely distributed throughout southern

China and the Malayan peninsula, extending towards the

Philippines and the Ryukyu Islands (Thompson & Auffenberg

1984; Páll-Gergely et al. 2015). Hypselostoma species are

described as having depressed conic spires with an upturned or

ascending last whorl and continuous peristome (Pilsbry 1918)

and protrusions or teeth along the aperture (Tongkerd et al.

2004), which is of great taxonomic importance. Pilsbry (1917)

provided the first monograph of this genus followed by Haas

(1937) and Tomlin (1939) with additional species and

subspecies described by Benthem Jutting (1949, 1950, 1962).

The Philippine species were also discussed by von Moellendorff

(1888), Quadras and von Moellendorff (1894, 1896), Pilsbry

(1917), and Haas (1937). Common features among the

Philippine group are the spiral striations on the shell and the

cross orientation of apertural teeth (Pilsbry 1918). Currently, a

total of eight species occur in the Philippines, with H. luzonicum

Moellendorff, 1888 and H. polyodon Moellendorff, 1896 having

five and two subspecies, respectively (Pilsbry 1917; Haas 1937;

Thompson & Auffenberg 1984).

The most recently described Philippine species is H.

latispira Thompson & Auffenberg, 1984 from Baguio City,

Benguet Province (Thompson & Auffenberg 1984). Thus far, it

is known only from the type locality until now. In this paper, a

new subspecies of H. latispira was discovered from Masungi

Georeserve, Rizal Province which is more than 200 km away

Harold B. Lipae1*, Angelique L. Estabillo2, Ian Kendrich C. Fontanilla3,

and Emmanuel Ryan C. de Chavez2

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Volume 14 Issue 3 - 2020 | 2 Philippine Journal of Systematic Biology Online ISSN: 2508-0342

Lipae et al.: New microsnail subspecies from Masungi Georeserve

from the type locality of its nominotypical subspecies, and

herein proposed based on morphological and molecular

characters.

Materials and Methods

Study Site

Specimens were collected from the limestone boulders of

Masungi Georeserve in Baras, Rizal Province last March 6,

2019. The georeserve is situated 47 km east of Manila and is

part of the Southern Sierra Madre mountain range (Fig. 1). It

covers over 1,500 ha of karst forest with limestone formations

of varying shapes and sizes. Three different sites were identified

and searched for the microsnail species namely: “600

steps” (14.59°N, 121.31°E, 614 masl); “Nanay” (14.59°N,

121.31°E, 631 masl); and “Tatay” (14.59°N, 121.32°E, 573

masl). The three sites are characterized by having moderate

amounts of grasses, herbs and shrubs, and some vines. Snails

were carefully removed from the limestone boulders and were

stored in conical tubes provided with damp tissue paper. In

total, 82 snails were sampled and brought to the laboratory for

sorting and further processing. All examined specimens from

the Masungi Georeserve were kept in the UPLB Malacology

Laboratory and type specimens (1 holotype and 4 paratypes)

were deposited at the UPLB Museum of Natural History

(UPLBMNHLS150-154).

For comparison, samples of H. l. latispira from Baguio

City, Benguet Province were also collected on March 23, 2019.

Ninety-eight snails were taken from the limestone boulders in a

residential area in Barangay Dominican Hill, Baguio City

(16.40°N, 120.58°E, 1546 masl). Live samples were placed in

Petri dishes with wet tissues and scraped food materials (lichen,

moss, algae) from the rocks and were reared in the laboratory.

All shells were measured in the laboratory.

Type specimens of H. latispira were also loaned from the

Florida State Museum, Gainesville, Florida, USA for further

evaluation. Four paratypes (dry) were examined

morphologically to compare with the samples collected from

the Masungi Georeserve.

Shell Measurements

Adult individuals were measured for the shell height, shell

width, aperture height, and aperture width using a digital

Vernier caliper following Tanmuangpak et al. (2015). The

number of whorls was also counted. Photomicrographs of the

snails were also taken using a camera (ToupTek XCAM

1080PHB, Hangzhou, China) attached to a stereo microscope

(Olympus SZX7, Tokyo, Japan).

Shell Morphometrics

Linear morphometrics were done using Principal

Component Analysis (PCA). Measurement data were exported

to Paleontological Statistics software (PAST version 3, Hammer

et al. 2016) and were color coded based on location. PCA was

performed under the covariation option to determine the shell

characters that would maximize the separation of the two

groups. Subsequently, the number of components was examined

which was generated using eigenvalues and percent variance.

Geometric morphometrics were also done to determine

shell shape variations between the two groups. Photos of the

snails (dorsal and lateral views) were taken and converted to a

tps file using tpsUtil (http://life.bio.sunysb.edu/morph/). The file

was opened in tpsDig (http://life.bio.sunysb.edu/morph/) to

assign landmark points on the shell. A combination of Types I

and II landmarks was used for both views (Fig. 2). Type I

landmarks are those which correspond to homologous

structures, juxtaposed with tissues, and have evolutionary

significance, whereas Type II landmarks are points that capture

the general shape of the shell. Eighteen landmark points were

used for the lateral view: landmarks 1, 2, 3, 5, 6, 8, 14, 15, 17

Figure 1. Map of Luzon Island showing Baguio City, Benguet

Province and Masungi Georeserve.

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Volume 14 Issue 3 - 2020 | 3 © Association of Systematic Biologists of the Philippines

Lipae et al.: New microsnail subspecies from Masungi Georeserve

and 18 as Type I, and 4, 7, 9, 10, 11, 12, 13 and 16 as Type II

landmark points. For the dorsal view, a total of 13 landmarks

were used: 1-6 and 7-13 as Types I and II, respectively. The

converted images were then analyzed using the MorphoJ

software (Klingenberg 2011). Procrustes superimposition was

used to initially extract the shape information of the data to

eliminate factors (i.e., size, position and rotation of the shells) in

the morphometric data and to detect problems in the data set

such as outliers. Generation of covariance matrices was done to

perform PCA and canonical variate analysis to search for

features which would indicate the separation between the

sample groups.

Phylogenetic Analysis

DNA Extraction and PCR Amplification

The molecular analysis was conducted at the DNA

Barcoding Laboratory, Institute of Biology, University of the

Philippines Diliman. Snail specimens from Masungi Georeserve

(n=4) and Baguio City (n=4) were crushed using two clean

microscope slides, then the shell fragments and soft tissue were

separated using a toothpick. DNA extraction was done by

following the manufacturer’s instruction of PureLink Genomic

DNA Kit. From the extracted DNA, portion of the

mitochondrial (16S rDNA) ribosomal gene was amplified using

Polymerase Chain Reaction (PCR). The PCR cocktail for 16S

fragment used the 16S arm forward primer (5’-

CTTCTCGACTGTTTATCAAAAACA-3’) (Bonnaud et al.

1994) and 16S BR primer (5’-CCGGTCTGAACTCAGATC

ACGT-3’) (Palumbi et al. 1991). With 13 µL per sample, the

PCR mix were as follows: 7.312 µL distilled water, 2.5 µL of

5X BiolineTM PCR buffer with DNTPs and MgCl, 0.375 µL

each of 10 mM 16S forward and reverse primers, 0.5 µL of

100% DMSO, 0.375 µL of 25 mM MgCl2, 0.06 of 5U/µl

BiolineTM MyTaq DNA Polymerase and 2 µL of sample DNA.

The cycling profile was as follows: denaturation of one cycle at

94°C for 2 min, followed by 39 cycles composed of 94°C for 30

s denaturation, 45°C for 30 s annealing and 68°C for 1 min

extension. Final extension step was set at 72°C for 2 min. The

PCR products were visualized in 1% agarose gel with ethidium

bromide under UV illumination. The gel extraction of the

purified DNA samples was done using Bioline Isolate II PCR

and Gel Kit. The purified DNA samples were sent to Macrogen

Korea, South Korea for the standard sequencing (Sanger

method).

Sequence Analysis

The Staden Package 4.0 (Staden et al. 2000) was used to

assemble the 16S mitochondrial ribosomal DNA fragments.

Using Basic Local Alignment Search Tool (BLAST, http://

blast.ncbi.nih.gov/Blast.cgi, Altschul et al. 1990), the closest

species from GenBank for each individual was identified.

Sequences from family Vertiginidae in which Hypselostoma

latispira belongs, and families Valloniidae and Strobolopsidae,

from which the closest species matches according to BLAST,

were obtained from GenBank and aligned with the samples

using the ClustalW multiple alignment in BioEdit Sequence

Alignment Editor 7.0.9.0 (Hall 1999).

Molecular Phylogenetic Tree Generation

The aligned sequences were tested for saturation using the

Xia test (Xia 2013) in DAMBE (Data Analysis in Molecular

Biology and Evolution). Since the sequences were found to have

hypervariability, the aligned sequences were uploaded to

GBlocks server (http://molevol.cmima.csic.es/castresana/

Gblocks_server.html) to remove ambiguously aligned internal

positions of the DNA and to conserve the informational regions.

The final sequence alignment was edited in BioEdit Sequence

Alignment Editor 7.0.9.0 accordingly and was run in DAMBE

to verify its level of saturation. The optimal model for 16S gene,

which was determined using the jModeltest 0.1 (Darriba et al.

2012), was used for the neighbor-joining (NJ) tree (Saitou & Nei

1987) in PAUP version 4.0b10 (Swofford 2002) and Maximum-

Likelihood (ML) (Felsenstein 1981) tree in PhyML version 3.0

(Guindon & Gascuel 2003). Bootstrap resampling for both NJ

and ML trees computed for 1000 replicates and all bootstrap

values were indicated.

Interspecific and Intraspecific Sequence Variations

The interspecific and intraspecific sequence divergence

was also determined by computing the pairwise distance

comparisons in PAUP to further verify if there were distinct

differences within the samples and Hypselostoma genus. The

four 16S rRNA sequences from both Masungi and Baguio were

compared to determine intraspecific sequence divergence while

one 16S rRNA sequence per Hypselostoma species obtained in

the GenBank was compared with the Masungi and Baguio

sequences to determine interspecific sequence divergence.

Figure 2. Dorsal (A) and lateral (B) views with corresponding landmark

points. Red dots are type I landmarks, and yellow dots are type II.

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Volume 14 Issue 3 - 2020 | 4 Philippine Journal of Systematic Biology Online ISSN: 2508-0342

Lipae et al.: New microsnail subspecies from Masungi Georeserve

Results

Conchometric Analysis

A total of 82 and 98 samples were collected from Masungi

and Baguio, respectively. All characters in PC1 and PC2

showed positive loadings except for major width (MW), which

is negative on the latter (Fig. 3). Among all the characters

included, MW also has the highest loading value (PC1). PC1

also accounted for most of the variance (80.45%), which is

followed by PC2 (10.14%). The two populations of H. latispira

have slightly overlapped with each other based on the linear

morphometrics with the red plane (Baguio) on the left and the

blue plane (Masungi) showing that some individuals have

similar measurements in between the two populations (Fig. 4).

Nonetheless, the scatter plot diagram demonstrated that the two

populations have aggregated separately from each other as

influenced by MW being the character with the greatest

contribution in separating the two populations.

Geometric morphometric analysis was also done in the

study to determine the shell shape variations between the two

populations. Results revealed that the two populations were

consistently separated based on the canonical variant analysis of

the two views (Fig. 5). The lateral and dorsal views have

Mahalonobis distance values of 5.8160 and 3.8037,

respectively, both of which are significant (p < 0.0001).

Molecular Analysis

From the five DNA samples extracted from Masungi and

Baguio, only four from each site were successfully utilized for

the amplification and sequencing of a 317-base pair (bp)

fragment. A total of 31 sequences were aligned: eight (8) from

this study, nineteen (19) from family Vertiginidae found in

GenBank for the in-group taxon, three (3) from family

Valloniidae, and one (1) from family Strobilopsidae for the

outgroup taxon.

The closest 16S sequences match of the samples using

BLAST was obtained (Table 1). There were no conspecific

matches from the species from GenBank (percent similarities

ranged from 83- 84%); therefore, the H. latispira samples have

novel 16S rRNA sequences.

The Xia test was implemented in DAMBE to test for

substitution saturation after removing the hypervariable regions

of the 16s rRNA using the GBlocks server (Table 2). The index

of substitution (0.3299) was less than the index of substitution

for symmetrical (0.6798) and asymmetrical tree (0.3596),

rendering the data set useful for molecular phylogenetic

analysis.

Sequence divergences between samples from Masungi and

Baguio, and Philippine Hypselostoma species and other

Hypselostoma species were obtained using pairwise distance

comparison (Table 2). Only an average of 0.0131 ± 0.0126

corrected pairwise distance was found between the samples

from the two sites, implying that the Masungi and Baguio

samples have an average of 99.9869% 16S rRNA sequence

similarity. Comparison of the sequences from the collected

Hypselostoma samples and Hypselostoma species from the

GenBank showed an average of 0.7778 ± 0.1852 corrected

pairwise distance. The percentage of pairwise distance

Figure 3. PC1 (A) and PC2 (B) loadings of the conchometric

characters. SH – shell height; LW – lesser width; MW – major width;

AH - aperture height; AW – aperture width.

Figure 4. Principal Component Analysis of the linear shell dimensions

of H. latispira from Baguio and Masungi Georeserve.

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Lipae et al.: New microsnail subspecies from Masungi Georeserve

comparison within samples and Hypselostoma species for the

corrected (Fig. 6) were illustrated. The highest sequence

divergence for both corrected and uncorrected distances was

found within the family level (corrected=0.67-0.847 & >1.0;

uncorrected=0.201-0.268) and least within the species level

(corrected and uncorrected=0-0.067). The percentage of

pairwise distance comparison within genus and species showing

the barcoding gap was 0.067-0.335%. However, a single sample

(Baguio 4) was distinct from the rest of the samples based on its

average pairwise differences: with other Baguio samples

(corrected=2.683%; uncorrected=2.528), with Masungi samples

(corrected=3.403%; uncorrected=3.157%), and for both sites

(corrected=3.093%; uncorrected=2.887%).

The NJ tree generated based on 16S rRNA gene (317 bp)

was rooted only to the Valloniidae, excluding the

Strobilopsidae, as an outgroup using the TPM1uf+G model as

determined by jModelTest as the optimum model (Fig. 7). The

H. latispira samples collected from Masungi distinctly separated

from the samples collected from Baguio with 87% bootstrap

support; however, H. latispira Baguio 4 did not cluster with the

other Baguio samples, having 84% bootstrap support, making

the Baguio samples a polyphyletic group. The Baguio cluster

was poorly supported (>50% bootstrap support). The

representative for the outgroup family Strobilopsidae was

observed to be grouped within the in-group taxon with poor

bootstrap support.

The ML tree for the phylogeny of 16S rRNA gene (317 bp)

of the samples from Masungi and Baguio, representatives of

Figure 5. Canonical Variate Analysis of the shell shape using the

lateral view (A) and dorsal view (B) of H. latispira from Baguio and

Masungi Georeserve. Mahalanobis distance = lateral view - 5.8160 (p <

0.0001); dorsal view - 3.8037 (p < 0.0001).

Figure 6. Intraspecific Sequence Divergence between Masungi and

Baguio samples and Interspecific Sequence Divergence of

Hypselostoma species obtained in the GenBank and Masungi and

Baguio sequences.

Hypselostoma

Location + Code

GenBank

Species

Accession

Number % Match Family

Baguio 1 Vallonia gracilicosta GQ921547 83.72% Valloniidae

Baguio 2 Vallonia gracilicosta GQ921547 83.46% Valloniidae

Baguio 3 Vallonia gracilicosta GQ921547 83.72% Valloniidae

Baguio 4 Vallonia gracilicosta GQ921547 83.80% Valloniidae

Masungi 1 Vallonia gracilicosta GQ921547 84.48% Valloniidae

Masungi 2 Vallonia gracilicosta GQ921547 84.48% Valloniidae

Masungi 3 Vallonia gracilicosta GQ921547 84.48% Valloniidae

Masungi 5 Vallonia gracilicosta GQ921547 84.48% Valloniidae

Table 1. BLAST results for the 16S sequences of Hypselostoma samples.

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Lipae et al.: New microsnail subspecies from Masungi Georeserve

families Vertiginidae, Valloniidae, and Strobilopsidae was

generated using the TPM1uf+G model (Fig. 8). The clusters

reflected were relatively similar with the NJ tree; however, the

polyphyletic group for the Baguio samples had a higher

bootstrap support (78%).

Discussion

Size variations and shape differences in terms of body

whorl and aperture width were observed between the two

populations of H. latispira. The snails from Baguio were

smaller in size and have narrow body whorl and apertural width

while those of the Masungi population were bigger and have

larger body whorl and apertural width. All Masungi samples

appear to be larger as reflected by the individual measurements,

both in linear and geometric morphometrics. At present, any

ecomorphological explanation cannot be provided for such

differences since factors affecting size and shape were not

included in this study. While size variations are generally driven

by genes, several environmental factors may greatly affect the

phenotypes of land snails. Higher plasticity in physiology and

morphology are more observed with increasing latitude and

altitude augmented by greater climatic variability (Naya et al.

2011). For certain species of snails, adult shell sizes decrease

with increasing elevation and decreasing temperature (Burla &

Stahel 1983; Baur & Raboud 1988). Interestingly, the trend

should be opposite since there is higher feeding activity with

high humidity and therefore an increase in body size. However,

smaller shell sizes are also associated with areas having higher

annual precipitation (Goodfriend, 1986; Pfenninger and

Magnin, 2001; Naya et al. 2011). These factors are present in

Baguio (high precipitation, high altitude, low temperature),

which could have potentially affected the size of the H. latispira

in the area. However, this remains to be tested and is an avenue

for further exploration.

The molecular analyses conducted to assess the

relationship between the H. latispira species collected from

Masungi Georeserve, Rizal and Baguio, Benguet showed mixed

results. The distinct separation of Masungi and Baguio samples

in both NJ and ML tree based on their 16S rRNA suggests that

the two samples are phylogenetically different. This implies that

evolutionary changes occurred on the 16S rRNA gene of the two

populations that led to the divergence into two clades. However,

it is also important to note that one specimen from Baguio falls

outside of the two groups. This sample has approximately 3%

genetic difference from the two populations, which could be

explained by incomplete lineage sorting, a common

phenomenon to recent and rapidly radiating species (Funk &

Omland 2003; Tang et al. 2012). Additionally, the specimen

also has strong morphological similarities with the rest of the

Baguio samples. Further taxonomic evaluation is needed for this

specimen to determine its identity.

Interestingly, the genus Hypelostoma did not form a

monophyletic group based on the 16S marker which is a

possible indication of convergent evolution of morphological

features as adaptation to its habitat (Goodacre & Wade 2001). It

is also possible that these are distinct genera based on

biogeography and that the taxon should be flagged for re-

evaluation. However, this must be further investigated and is

beyond the scope of this paper.

Generally, genetic differentiation is more likely to occur

where physical barriers prevent gene flow between populations

(Crispo et al. 2006); in this case the mountain on which Baguio

is situated and the 200-km distance between the two sites may

have acted as physical barriers that can explain the slight genetic

difference within H. latispira. The difference in environmental

conditions between the two sites (e.g. 1000-m elevation

difference) may have played a role in the adaptive divergence of

H. latispira that led to genetic variation. It is also important to

consider how the interaction of dispersal and gene flow would

affect adaptive divergence of the species (Räsänen & Hendry

2008). Moreover, Clarke & Murray (1969) also observed that

due to their low mobility, snails would have some genetic

differences even in short distances (>20 m) that may drive

ecological speciation of the snails. The observed nesting of the

outgroup representative of family Strobilopsidae, Strobilops

Hypselostoma Comparisons

Number of comparisons

Average uncorrected distances ± SD

Range of uncorrected distances (p)

Average corrected distances ± SD

Range of corrected distances

Between genera 38 0.2701 ± 0.0288 0.1829 to 0.3006 0.7778 ± 0.1852 0.3540 to 1.002

Between sampling sites

16 0.0126 ± 0.0112 0.0063 to 0.0315 0.0131 ± 0.0126 0.0061 to

0.0340

Table 2. The range and average uncorrected and corrected distances among the sequences of genus Hypselostoma.

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Lipae et al.: New microsnail subspecies from Masungi Georeserve

Figure 7. Neighbor-joining (NJ) gene tree based on the 317 nucleotides of the 16S rRNA gene of Hypselostoma species from Masungi

Georeserve and Baguio, representative species from family Vertginidae as in-group taxon, family Valloniidae (Vallonia costata, Vallonia

gracilicosta and Zoogenetes harpa) and family Strobilopsidae (Strobilops labyrinthica) as outgroup taxon. Values on nodes represent percent

NJ bootstraps based on 1000 replicates; values less than 50% are not shown. Scale bar represents 1 nucleotide substitution for every 10

nucleotides.

Figure 8. Maximum Likelihood (ML) gene tree based on the 317 nucleotides of the 16S rRNA gene of Hypselostoma species from Masungi

Georeserve and Baguio including outgroup and ingroup taxa. Values on nodes represent percent NJ bootstraps based on 1000 replicates;

values less than 50% are not shown. Scale bar represents 5 nucleotide substitutions for every 100 nucleotides.

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Lipae et al.: New microsnail subspecies from Masungi Georeserve

labyrinthicus (Say, 1817) with the in-group family Vertiginidae

in both NJ and ML trees should be further clarified using

another marker to resolve the placement of the Strobilopsidae.

Climo (1979) also noted the uncertain taxonomic status of the

group relative to the other families.

Meanwhile, the pairwise divergence computed between

the Masungi and Baguio samples suggested a completely

opposite result from the generated phylogenetic trees. Since a

barcoding gap was observed between intraspecific and

interspecific variations of H. latispira, a threshold value (0.067)

for delineating species was obtained. Threshold values are

genetic distance values that can be computed from the pairwise

distance comparison when a barcoding gap between the

intraspecific and interspecific genetic variations is observed

(Meyer & Paulay 2005). The threshold value would allow

delineation and identification of a species, and it would vary

across taxa. The average genetic difference of the Masungi and

Baguio samples (0.0131 ± 0.0126) implies that the H. latispira

samples are 99.98% similar in terms of their 16S rRNA

sequences, a significant evidence that the samples from the

different sites are the same species. Some Southeast Asian land

snails also exhibit low genetic divergence. Gyliotrachela

hungerfordiana (Möllendorff, 1981), which is a widespread

species, revealed high genetic similarity between individuals in

relatively close areas with an intraspecific divergence of less

than 0.10 (Hoekstra & Schilthuizen 2011) similar to Bornean

Georissa spp. (0.03-0.11) (Khalik et al. 2019). Abu-Bakar et al.

(2014) also showed low species and intraspecific genetic

diversities (4.3–10.1%) in some snails using 16S rRNA from an

island off Peninsular Malaysia. As in the case of the H. latispira

populations considered in this study, connectivity between the

sites would greatly contribute to increased gene flow and high

similarity. However, there are no contiguous forests over

limestone that exist which would directly connect the two

locations except for a few fragments of karst forests along the

eastern side of the central part of Luzon Island. The closest karst

ecosystem to Masungi is in Rodriguez, Rizal and Biak-na-bato,

Bulacan which are >20 km and around 90 km away,

respectively. Baguio, on the other hand, is more than 150 km

away from these two karst forests and the Southern Sierra

Madre mountains in eastern Luzon would be the possible

stepping stones for this species which could probably explain to

some degree the low genetic distance between the populations.

Figure 9. Paratype specimen of Hypselostoma latispira latisipira.

Shell Height (mm)

Major width (mm)

Lesser width (mm)

Aperture width (mm)

Aperture width (mm)

SH/MW (mm)

H. l. latispira

Holotype 2.30 4.50 2.90 1.70 0.51 0.65

Paratype 2.30 4.20 2.80 - 0.55 0.67

Paratype 2.40 4.20 3.00 1.80 0.56 0.71

Paratype 2.20 4.40 3.00 1.70 0.51 0.68

Paratype 2.40 4.40 3.00 1.90 0.54 0.68

H. l. masungiensis

Holotype 2.60 5.00 3.20 2.00 0.52 0.64

Paratype 2.50 4.70 3.00 1.80 0.53 0.64

Paratype 2.60 4.70 2.90 1.90 0.55 0.62

Paratype 2.60 4.90 3.00 1.80 0.53 0.61

Paratype 2.50 4.90 3.00 1.80 0.51 0.61

Table 3. Shell measurements of the type specimens of H. l. latispira and H. l. masungiensis.

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Lipae et al.: New microsnail subspecies from Masungi Georeserve

Nevertheless, it must be put into consideration that there

are limitations in the effectivity of using the intra- and

interspecific genetic distance for species identification. Several

studies have criticized the effectivity of threshold value for

delineating species for it is only effective in “globally

comprehensive and well-circumscribed datasets” (Meyer &

Paulay 2005), and that the barcoding gap is usually absent and

instead an overlap is observed when large proportion of closely

related taxa is analyzed (Moritz & Cicero 2004). Other studies

have also reported that using this method is not useful in

identifying taxa with wide range distributions (Bergsten et al.

2012). Although there are studies that would still argue for the

reliability of intra- and interspecific genetic distance for

delineation purposes (Barrett and Hebert 2005), it should be

reckoned that for this method of species identification to be

accurate and conclusive an extensive genetic sampling is

required which is beyond the scope of this study. There are only

five 16S rRNA Hypselostoma species sequences available in the

GenBank that render the sample size comparably insufficient.

This would mean that the lack of molecular researches on these

micro land snails would still restrict phylogenetic elucidation of

the species.

Taxonomy

Hypselostoma latispira masungiensis Lipae & de Chavez,

subsp. nov.

(Fig. 10)

Type material. Holotype (SH: 2.6 mm, LW: 3.2 mm, MW: 5

mm, AH: 1.8 mm, AW: 2 mm) UPLBMNHLS150, Philippines,

Luzon Island, Rizal Province, Municipality of Baras, Masungi

Georeserve, limestone outcrops of 600 steps, 631 masl, 14° 35'

38.724” N, 121° 19' 2.424” E, coll. H.B. Lipae, 6 March 2019.

Paratypes: UPLBMNHLS151 (paratype1), UPLBMNHLS152

(paratype2), UPLBMNHLS153 (paratype3), UPLBMNHLS154

(paratype4), coll. H.B. Lipae, same data as preceding.

Diagnosis. This subspecies is distinguished from H. l. latispira

(Fig. 9) by having a more prominent infraparietal plica and an

additional apertural tooth (interpalatal plica) (Fig. 11). H. l.

masungiensis also has larger major width and taller apertural

height. It also has a wider body whorl and narrow apertural

width than H. l. latispira from Baguio.

Figure 10. Hypselostoma latispira masungiensis subspecies nov.

Figure 11. Apertural teeth comparison between nominotypical (left)

and novel subspecies (right). PL - parietal lamella, IF - infraparietal

lamella, CL - columellar lamella, LPP - lower palatal plica, ITP - in-

terpalatal plica, UPP - upper palatal plica.

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Volume 14 Issue 3 - 2020 | 10 Philippine Journal of Systematic Biology Online ISSN: 2508-0342

Lipae et al.: New microsnail subspecies from Masungi Georeserve

Description. Shell relatively medium- to large-size for the

genus, 4.4-5.0 mm wide. Brown with white peristome.

Depressed-conical in shape; about 0.51-0.55 times. Minor

diameter of shell 0.61-0.64 times major diameter. Sculpture

consisting of low irregularly spaced growth striations and

wrinkles giving the surface a fine, undulating appearance.

Peristome slightly expanded and nearly rounded in shape.

Apertural dentition consisting of 6 teeth deeply inserted within.

Parietal lamella largest, about as high as wide, weakly sinuous.

Infraparietal lamella protruding. Columellar lamella half as long

as parietal lamella. Upper palatal plica tubercular and slightly

smaller than lower palatal plica. Interpalatal plica small and

tubular.

Measurements (in mm): SH = 2.2-2.6, LW = 2.9-3.2, MW =

4.4-5.0, AH = 1.5-1.8, AW = 1.7-2.0 (n = 82).

Etymology. The subspecies name is derived from the type

locality – Masungi.

Type Locality. Philippines, Luzon Island, Rizal Province,

Municipality of Baras, Masungi Georeserve, 14° 35' 24” N,

121° 18' 36” E.

Conclusions and Recommendations

The H. latispira collected from Masungi Georserve is

hereby proposed as a new subspecies based on shell size, shell

shape variations, presence of additional apertural tooth

(interpalatal plica), and novel site congruent clade separation of

Masungi and Baguio H. latispira. A new distribution of H.

latispira outside its type locality is also reported here.

Moreover, a total of eight novel sequences of H. latispira were

produced in this study. It is recommended, however, to include

other genes to further determine their molecular differences and

further confirm the topology of the two populations. Also,

relevant environmental data must be gathered to reflect the

ecomorphological variations of the snail in the two areas.

Further surveys must also be conducted in the karst systems

between the two sites to reveal the real distributional range of

H. latispira.

This paper hopes to provide additional knowledge on the

existing but outdated literature on Philippine microsnails.

Moreover, the discovery of a new subspecies further highlights

the importance of karst landscapes as areas of high conservation

value.

Acknowledgements

We would like to thank the Masungi Georeserve

Foundation for allowing us to conduct a study in the Masungi

Georeserve and the Department of Environment and Natural

Resources for granting us a permit for collection (R4A-WGP-

2018-R17-034). We would also like to thank the University of

the Philippines System Enhanced Creative Work and Research

Grant (ECWRG 2018-02-013) for funding this research. Special

thanks to the Florida State Museum, Gainesville, Florida for

loaning the paratype specimens of H. l. latispira. Within the

University of the Philippines, we would like to thank Dr.

Ayolani V. de Lara for the use of the Malacology Laboratory,

Dr. Zenaida Baoanan for lending their H. l. latispira collections,

Dr. Ireneo L. Lit, Jr. and Prof. Annalee Soligam-Hadsall for the

invaluable input on the taxonomy part.

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