1st year mbbs curriculum (revised 2017) · 2019-08-05 · 4 guidelines: 1st year mbbs curriculum...
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1
1st Year
MBBS
Curriculum
(Revised 2017)
National University of Medical Sciences
Pakistan
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Contents
Module No Section No Subject Page No
Module-I
Section-I Anatomy 09
Section-II Physiology 18
Section-III Biochemistry 28
Module-II
Section-I Anatomy 39
Section-II Physiology 57
Section-III Biochemistry 69
Module-III
Section-I Anatomy 78
Section-II Physiology 96
Section-III Biochemistry 107
Table of Specifications
Anatomy 115
Physiology 117
Biochemistry 119
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MBBS PROGRAMME AT NUMS Vision: We strive to inspire nationally and internationally by pursuing excellence in medical
education, research and patient care to meet the evolving healthcare needs of the
nation and the region through Professionalism, Excellence and Teamwork.
Mission: Our mission is to:
Create and nurture a diverse community of the best people as key members of
the medical community, whether in clinical practice, medical education,
research or as leaders of the health-care system, serving both the uniformed
and the nation at large.
Produce socially accountable competent doctors who will make a significant
contribution to the health of the community through evidence-based healthcare.
Attract best faculty who can contribute to the quality of medical education and
research.
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Guidelines: 1st Year MBBS Curriculum
Preamble.
This curriculum meets the standards of Pakistan Medical and Dental Council, Higher Education
Commission of Pakistan, and World Federation of Medical Education, so that our students, on
completion of program have required competencies as defined worldwide in a graduate doctor.
The curriculum for 1st year MBBS has been reviewed by faculty of constituent/affiliated colleges
in collaboration with Academic Directorate of NUMS.
Model.
NUMS curriculum, revised 2017, is based on SPICES model of educational strategies. It is
student centered, problem based, integrated, community oriented and systematic. Our
curriculum is evolved taking into consideration traditional, experiential, behavioral, and
constructivist perspectives of curricula.
Organization.
The curriculum of 1styear MBBS is modular. It is organized and the content taught is integrated
concurrently in themed modules. The themes form the building blocks of this curriculum. There
can be vertical thread of content across more than one module for the content that does not fit
into central theme of a module. In each module the sequencing of the content is subject based.
Modules.
The key detail is as follows
1. There shall be three modules in an academic year.
2. Each module shall have a title. The name shall represent the content taught and learned
the majority of time in that module.
3. The duration of three modules shall be 8 – 10 weeks each.
4. The syllabus shall be integrated horizontally around systems of the body.
5. Additional chunks of content may be added in a module that exactly does not fit in the
central theme of the module.
6. There can be vertical thread of a content across more than one module for the content
that does not fit into central theme of a module
7. There shall by vertical integration to the extent decided by the medical college.
8. Total Contact Hours of each subject as per PM&DC is under: -
5
Subject Contact Hours
Anatomy 250
Physiology 250
Biochemistry 160
Pathology 15
Community Medicine 15
Medicine & Allied 15
Surgery & Allied 15
Radiology 05
Behavioural Sciences 10
*Subject is not assessed in FIRST Professional examination
Educational strategies:
The educational strategies overarching the curriculum shall be:
Student centered
Integration
Problem based
Structured
With component of community based and electives
Teaching and Learning methods (MIT)
Multiple learning strategies are used. Interactive lectures are used to provide students entrance
to topic needing much effort by the student to understand subject matter. We have used
Problem based learning to integrate basic and clinical sciences, and give a learning experience
that is contextual, realistic, and relevant. Small group discussions encourage students to social
learning bring their concepts and learning to be discussed and schemas corrected and refined.
Working in labs provides experiential, hand on learning.
Time table / Structured Training Program
The colleges shall make their own structured training program, taking care of recommended
teaching hours in a subject as described by PM&DC.
Internal Assessment.
During the module the students shall be continually formatively assessed. The weightage of
internal assessment shall be 10 % in 1st professional MBBS Examination. There shall be three
modular and one pre -annual examination. The scores of tests at the end of each modular
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assessment and pre-annual examination shall be used for calculation of the internal
assessment.
Module and Pre-Annual Examination
There will be three module examinations, one at the end of each module.
There will be only one Pre-annual examination.
The structure of the paper of all the module examinations and pre-annual will be same as that
for annual examination though syllabus will be different.
The syllabus for modular examination will be announced by the department at least 02 weeks
prior to examination.
Pre-annual examination will be from whole syllabus.
The date sheet for Module and pre-annual examinations will be published by Examination
branch of college while the examinations will be conducted by respective department.
The result will be submitted to NUMS examination branch for incorporation in internal
assessment before annual examination
Annual Professional Examination.
The University shall take the 1st professional Examination as per PM&DC guidelines at the end
of the academic year. Each subject section has table of specification of Module, Pre-annual
and Annual examination. Annual Theory & Practical Examination shall be of 200 marks each
in; Anatomy, Physiology and Biochemistry. The pass score shall be 50% in theory and practical
separately. The detail marked distribution of 1styear is as under
S/N Subject MCQs PBQs/ SAQs/SEQS
Int Assess
Sub Total
Oral & Practical
Int Assess
Sub Total
Grand Total
1 Anatomy 25 65 10 100 90 10 100 200
2. Physiology 25 65 10 100 90 10 100 200
3. Biochemistry 25 65 10 100 90 10 100 200
600
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STRUCTURED SUMMARY OF MODULES-1st YEAR
MODULES BLOCKS
THEMES ANATOMY PHYSIOLOGY BIOCHEMISTRY
Y1M1
1. Introduction 2.Cells and genetics 3. Blood 4. Loco motor (Upper limb)
Gross anatomy Upper limb General Anatomy General anatomical terms Bone Joints Muscular system Nervous system-I (Introduction) Embryology Mitosis and meiosis, Gametogenesis Ovulation &Implantation 1st week of development 2nd week of development 3rd week of development Histology Cell (Introduction, staining, cytoskeleton, cell junctions) Surface and glandular epithelium Connective tissue(General) Bone Cartilage Muscle
Cell, transport and general physiology + Genetics Nerve and membrane potential Muscle physiology Blood Immunity
Chemistry of Protein Nucleotides and Nucleic Acid Porphyrins & Hemoglobin Biochemistry of Cell & Biological membrane
Y1M2 1.Thorax 2.Cardiovascular system
Gross anatomy Thorax Embryology Embryonic period, Fetal period Placenta and fetal membranes Twining CVS Histology Circulatory System Immune system General Anatomy Lymphatic system Circulatory system
Cardiovascular Physiology
Chemistry of carbohydrates Chemistry of Lipids Enzymes Body Fluids Minerals & Trace Elements
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Y1M3 Lower Limb Respiratory System
Gross anatomy Lower Limb General Anatomy Skin Fascia Vertebral column Nervous system-II Embryology Birth defects Body cavities Respiratory system Muscular System Skeletal system except head and neck Development of limbs Histology Respiratory system
Physiology of respiration Deep sea physiology Aviation/space physiology High altitude physiology Exercise physiology
Nutrition Water soluble vitamins Fat Soluble vitamins
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1st Year MBBS Curriculum MODULE-I
Section-I Anatomy
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Summary:
Code Y1M1
Name Anatomy
Duration 10 weeks
Broad Themes of Module (Theme: a subject that is being integrated a majority of time of module)
Introduction 2. Cells and genetics 3. Blood 4. Loco motor (Upper limb)
Subject Themes
Gross anatomy Upper limb General Anatomy General anatomical terns Bone Joints Muscular system Nervous system-I (Introduction) Embryology Mitosis and meiosis, Gametogenesis Ovulation &Implantation 1st week of development 2nd week of development 3rd week of development Histology Cell(Introduction, staining, cytoskeleton, cell junctions) Surface and glandular epithelium Connective tissue(General) Bone Cartilage Muscle
Prerequisite Module None
Mode of Information Transfer:
MIT
Lectures
Dissection
Demonstration
CBL
Practical
Dissection movies
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Anatomy learning outcomes:
GROSS ANATOMY
Topic Learning Objectives Students should be able to:
MIT (Mode of information transfer)
GROSS ANATOMY UPPER LIMB Bones of upper limb
Identify important bony land marks of Scapula
Describe the attachment of muscles& ligaments of Scapula
Identify important bony land marks of Clavicle
Describe the attachments of muscles and ligaments of clavicle.
Identify important bony land marks of Humerus.
Identify the different types of fractures of humerus and nerve injuries
Describe the attachment of muscles & ligaments of Humerus
Identify important bony land marks of radius &Ulna.
Describe the attachments of muscles & ligaments of radius and Ulna
Identify the common sites of fractures of radius &Ulna.
LGIS/ Demo
Breast Knowledge
Discuss the structure and divisions of breast tissue
Discuss importance of fibrous septa
Discuss its blood supply and venous drainage
Discuss lymphatic drainage of each quadrant of breast
Discuss the importance of sentinel lymph node
Describe supernumerary and retracted nipples
Describe breast abscess and CA breast
LGIS/ Demo
Scapular region Knowledge
Describe muscles connecting the upper limb to thoracic wall
Describe muscles connecting the scapula to humerus
Discuss origin insertion, nerve and blood supply of these muscles
Identify the boundaries of quadrangular and triangular spaces
Identify structures present in these spaces
Discuss arteries and nerves present in this region Skill
Study prosected specimen and identify the muscles of this region
LGIS/ Demo
Acromioclavicular and sternoclavicular joint
Knowledge
Describe formation, ligaments and articulation of these joints
Discuss scapulohumeral mechanism
Discuss blood supply and nerve supply of these joints
Discuss injury and dislocation of these joints
LGIS/ Demo
Shoulder joint Knowledge
Describe movements, ligaments, nerve supply & blood supply of Shoulder joint
Describe arterial anastomosis around shoulder joint
Describe the Dislocation of shoulder joint
LGIS/ Demo
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Explain Rotator Cuff & enumerate the injuries to it.
Discuss rotator cuff tendinitis
Describe rupture of supraspinatus tendon
Discuss dislocation of shoulder joint
Discuss shoulder pain Skill
Perform movements of shoulder joint
Study the model of shoulder joint and mark its ligaments and rotator cuff muscles around it
Axilla Knowledge
Describe the boundaries & contents of Axilla
Describe the relation of cords of brachial plexus
Describe injury to the Axillary Vein and artery
Describe axillary lymph nodes, their location, division and area of drainage
Discuss lymphangitis and lymphadenitis
Describe the importance of axillary lymph nodes in CA breast
Skill
Study prosected specimen and models of axilla
LGIS/ Demo
Arm
Knowledge
Discuss anterior and posterior compartment of arm and structures present in it
Discuss origin, insertion of muscles of anterior and posterior compartment of arm
Discuss blood supply and nerve supply of these compartments
Skill
Study the models and prosected specimen of arm and identify the structures present in this region.
LGIS/ Demo
Elbow joint Proximal and distal radioulnar joints
Knowledge
Describe the type, capsule and ligaments of these joints
Discuss the movements of these joints
Discuss muscles performing these movements
Discuss blood supply and nerve supply of these joints
Describe the anatomical significance of carrying angle
Discuss dislocation and clinical correlation of these joints
Discuss structures getting damaged in elbow joint dislocation
Skill
Perform movements at elbow joint and discuss the muscles involved in these movements
Study the models of elbow joint and recognize the bones and ligaments forming the joint
LGIS/ Demo
Cubital fossa
Describe the boundaries of cubital fossa
Enlist the contents of cubital fossa and their arrangement
Discuss the importance of structures present in cubital fossa
Skill
Mark the boundaries and contents of cubital fossa on a model
LGIS/ Demo
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Forearm Knowledge
Discuss contents of anterior lateral and posterior fascial compartments of forearm
Discuss muscles of these compartments and their blood supply
Discuss the course of nerves and arteries present in this region
Discuss boundaries of anatomical snuff box and its importance
Describe flexor and extensor retinaculum
Discuss clinical correlations of this compartment including tennis elbow
Skill
Study prosected specimen of forearm and identify muscles, blood vessels and nerves present in this region
Study the models of forearm and discuss origin and insertion of muscles
Mark the extensor and flexor retinacula on the model
LGIS/ Demo
The region of wrist and palm of hand
Knowledge
Discuss bones of Hand
Describe functions of muscles in Thenar, Hypothenar & Central compartments
Describe the fibrous sheaths of the digits of the hand
Discuss the anatomical structures involved in Tenosynovitis
Describe Palmar aponeurosis
Enumerate fascial spaces of Palm
Describe boundaries & contents of spaces of palm
Discuss clinical importance of spaces of palm
Discuss wrist joint
Explain the movements at wrist joint
Discuss ligaments of wrist joint and its relations
Discuss the anatomical structures involved in Wrist fractures
Explain the formation of Carpal tunnel and its contents
Explain the Carpal tunnel syndrome
Describe the course & branches of nerves in Hand
Discuss metacarpophalangeal and interphalangeal joints of hand
Skill
Perform movements of wrist joint and recognize the muscles involved in these movements
Study the model of hand to visualize muscles of hand and insertion of long tendons
Study prosected specimen of hand to identify muscles and blood vessels of hand.
LGIS/ Demo
Nerves of upper limb & brachial plexus
Knowledge
Describe formation of Brachial Plexus with emphasis on Cords, Roots & trunk
Discuss injuries of the brachial plexus: Klumpke paralysis & Erb-Duchenne palsy
Describe formation, distribution & important relations of following nerves:
LGIS/ Demo
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Axillary nerve Musculocutaneous nerve Median nerve Radial nerve Ulnar nerve Describe the innervation of each compartment and the specific deficits that occur with lesions of individual nerves at different parts along the course of following nerves: Musculocutaneous nerve Median nerve Radial nerve Ulnar nerve discuss the anatomical sites of lesion of nerve correlating them to sensory and motor loss within area of distribution
Cutaneous nerves of upper limb
Knowledge
Describe the cutaneous innervation of the arm, forearm and hand.
Compare and contrast dermatomes with the cutaneous innervation of specific nerves in Arm & forearm
Skill
Draw & label cutaneous innervation of lower limb
Draw & label the dermatomes of lower limb
LGIS/ Demo
Blood supply of upper limb
Knowledge
Discuss the course, extent & branches of Axillary, Brachial, Ulnar and Radial arteries
Describe the anatomical sites of lesion of artery correlating them to ischemia within area of distribution
Describe the formation of Superficial and Deep Palmar Arches in hand
Describe the structures involved in Laceration of Palmar Arches
Describe the formation & drainage of following Veins:
Axillary vein
Basilic vein
Cephalic vein
Median cubital vein
Discuss the importance of Median Cubital Vein in venipuncture
LGIS/ Demo
Lymphatic drainage of upper limb
Discuss the lymphatic drainage of upper limb in detail LGIS/ Demo
DISSECTION Perform dissection to identify main muscles of scapular region along with their nerve supply Perform dissection to identify main muscles of arm along with their nerve supply Perform dissection to identify main muscles of forearm along with their nerve supply. Perform dissection to identify main muscles of hand along with their nerve supply Perform dissection to identify muscles forming boundaries of cubital fossa
Dissection
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Perform dissection to identify contents of cubital fossa
IMAGING Identify the common sites of fracture on radiographs correlating its predisposition to fracture in the following bones: Scapula Clavicle Humerus Radius Ulna Identify the bones and bony articulations of upper limb on AP and Lateral view of Radiographs
Demo
EMBROLOGY
MITOSIS & MEIOSIS Define Meiosis Differentiate first and second meiotic divisions. State the phases of meiotic divisions. Justify the importance and result of meiosis in both sexes Differentiate between mitosis and meiosis. Describe the structure abnormalities in chromosomes like Euploid, Aneuploid, Trisomy, Non-disjunction, Translation Correlate the structure abnormalities with clinical conditions like: Down’s syndrome Klinefelter and Tuner syndromes
LGIS
GAMETOGENESIS-I Describe the events of spermatogenesis. Describe the morphological changes during maturation of the gametes Enlist the differences between spermiogenesis and spermatogenesis
GAMETOGENESIS-II Define the ovarian cycle Describe the stages of follicular maturation primary preantral, secondary, preovulatory, Explain the hormonal control (FSH, LH) of ovarian cycle Discuss the transport of ovum from the surface of ovary to ampulla of fallopian tube
LGIS
OVULATION & IMPLANTATION
Define fertilization State normal site of fertilization Describe the results of fertilization Mentions the factors affecting fertilization Enumerate the changes that occur in spermatozoa before fertilization Explain the factors affecting penetration of sperm through the zona pellucida for formation of Pro nuclei Discuss the formation of zygote Correlate the transport of zygote from ampulla of fallopian tube to the uterine cavity and cleavage Explain the formation of blastocyst
LGIS
1ST WEEK OF DEVELOPMENT
Explain the formation of outer and inner cell masses Discuss the further development of outer cell mass (trophoblast), Differentiate syncytiotrophoblast and cytotrophoblast with its microscopic appearance Describe the process of implantation (day wise change)
LGIS
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2ND WEEK OF DEVELOPMENT
State the differentiation of embryonic pole and development of bilaminar germ disc with formation of Epiblast and hypoblast, their cavities (amniotic cavity and primary yolk sac) Discuss the development of the chorionic sac and formation of primary chorionic villi and growth of syncytiotrophablast Explain the establishment of utero placental circulation Explain why the second week is known “ as week of two’s”
LGIS
3RD WEEK OF DEVELOPMENT
Define gastrulation (formation of three germ layers) Discuss the development of primitive streak and related congenital anomalies (Sacrococcygeal teratoma) Describe the development of notochordal process, notochord canal, prechordal plate and cloacal membrane Define Neurulation List the steps of development of Neural Tube Enumerate the derivatives of Neural Crest Cells State the congenital anomalies resulting from abnormal neurulation Describe the formation of three germ layers and enlist their derivatives Differentiate three components of Mesoderm (Paraxial, Intermediate and Lateral Plate Mesoderm) Define Somites
LGIS
HISTOLOGY
CELL (INTRODUCTION, STAINING, CYTOSKELETON, CELL JUNCTIONS)
KNOWLEDGE Identify parts of Light Microscope Discuss the working & magnification of Light Microscope Identify different types of Microscopes and their functions Define resolution Describe the steps involved in tissue processing Define cell, identify various types of cells and shapes Define Cytoskeleton. Enumerate the cell junctions and describe their histological structure SKILL Identify and draw the different parts of microscope and illustrate their usage. Focus the prepared slide at different magnifications. Identify the different shapes of cells and their examples Draw a labelled diagram of different types of shapes of cells
LGIS Lab
SURFACE & GLANDULAR EPITHELIUM
Classify the body tissue into categories Define Epithelium Classify various types of Epithelium Discuss general features of Epithelial cells (basal, apical and lateral surfaces) Explain the different types of epithelium with examples Describe glandular epithelium Differentiate the structure of serous and mucus secreting cells SKILL Identify the different types of Epithelia and their examples Draw a labelled diagram of different types of simple and stratified epithelia
LGIS Lab
17
Identify mucous and serous acini with haematoxylin and eosin Draw a labelled diagram of mucous and serous acini with haematoxylin and eosin
CONNECTIVE TISSUE (GENERAL)
KNOWLEDGE Explain the components of connective tissue Describe different types of cells in connective tissue Describe different types of fibers in connective tissue Discuss various constituents of ground substance Classify various types of connective tissues Describe the histology of different types of adipose tissue SKILL Identify the microscopic structure of loose connective tissue, dense regular and irregular connective tissue Draw a labeled diagram showing the microscopic structure of loose connective tissue, dense regular and irregular connective tissue with haematoxylin and eosin Draw a labeled diagram of the connective tissue with haematoxylin and eosin
LGIS Lab
BONE KNOWLEDGE Describe microscopic features of bones and types of ossification Enlist the location of different types of bones
SKILL Identify different types of bone microscopically Draw a labelled diagram showing the histological structure of different types of bone with hematoxylin and eosin
LGIS Lab
CARTILAGE KNOWLEDGE Describe microscopic features of various types of cartilage SKILL Identify different types of cartilage microscopically Draw a labeled diagram showing the histologic structure of different types of cartilage with hematoxylin and eosin
LGIS Lab
MUSCLE KNOWLEDGE Describe the microscopic features of skeletal, smooth and cardiac muscle SKILL Identify the different types of muscle microscopically Draw a labeled histological diagram of different types of muscles with hematoxylin and eosin
LGIS Lab
List of Histology Practical’s- 1st Year MBBS Class first module
Topic
Histology and Its Methods of Study
Epithelial Tissue
Connective Tissue
Muscle tissue
Bone
Cartilage
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MODULE-I
Section-II
Physiology
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Summary:
Code Y1M1
Name Physiology
Duration 10 weeks
Broad Themes of Module
(Theme: a subject that is being
integrated a majority of time of
module)
Introduction
2. Cells and genetics
3. Blood
4. Loco motor (Upper limb)
Subject Themes
Cell, transport and general physiology +
Genetics
Nerve and membrane potential
Muscle physiology
Blood
Immunity
Prerequisite Module None
Mode of Information Transfer:
MIT
Lectures
Tutorials (PTT)
CBL
Practicals
Class tests
Physiology learning outcomes:
GENERAL
PHYSIOLOGY
Know the functional organization of human body.
Know the parameters needed for the control of the
‘internal environment’.
Understand the principles of the mechanics of
homeostasis
Able to differentiate between positive and negative
feedback as the control systems of the body
Relate positive and negative feedback system with
common examples
Differentiate between composition of intracellular and
extra cellular fluid
Know the functional organization of human body.
Know the parameters needed for the control of the
‘internal environment’.
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Understand the principles of the mechanics of
homeostasis
Able to differentiate between positive and negative
feedback as the control systems of the body
Relate positive and negative feedback system with
common examples
Differentiate between composition of intracellular and
extra cellular fluid
GENETICS
54 CELL
PHYSIOLOGY
Comprehend organization of the physical structure of
the cell (cell Membrane, cytoplasmic organelles,
nuclear membrane, nuclear organelles)
Understand the functional systems of the cells
(ingestion, digestion, synthesis, extraction of energy
from nutrients)
Overview movements of cells (amoeboid, ciliary etc)
Know the genes in the cell nucleus
Explain the process of transcription and translation
(synthesis) in the cells
Understand the gene functions performed in the cells
Comprehend the genetic control of cells functions and
cells-reproduction
Classify various modes of transport of substances
across the cell-membrane
Compare and contrast amongst the processes of
osmosis, diffusion, facilitated diffusion, primary active
transport, secondary active transport
Relate the modes of transport with common examples
in human body
Appreciate the physiological significance of the
transport of substances through the cell membrane
55 BLOOD AND
RELATED
DISORDERS
Appreciate the composition of blood and general
functions of blood.
Know different types of plasma protein.
Comprehend composition of plasma protein and their
functions and importance for the human body.
Overview sites of hemopoiesis in the body during
different stages of life along with composition and
functions of bone marrow.
Understand different types of blood cells, their
physiological characteristics with functional differences.
Know the formation, types and functions of hemoglobin
along with its association with different kinds of anemia.
21
Classify anemia its types and causes.
Identify the factors regulating erythropoiesis and
maturation of RBC.
Comprehend basis of immune system of the body and
tissues related with immunity.
Know the types of immunity, mechanism of their
development and characteristics of different immune
mechanisms and significance of vaccination.
Describe the role and functions of white blood cells in
providing protection to the body against injury.
Appreciate the physical and functional characteristics of
different WBCs and physiological significance of
leucopenia, leukocytosis and leukemia.
Comprehend the composition and functions of reticulo-
endothelial system.
Know the principles of blood grouping and
physiological significance.
Identify the various blood groups and hazards of
matched and mismatched blood transfusion with
especial reference to Erythroblastosis fetalis.
Know various processes involved in hemostasis.
Appreciate the characteristics of platelets and their
importance in hemostasis.
Comprehend the physiology of clotting factors and
mechanism of blood clotting.
Know the effect of deficiency of platelets and clotting
factors in hemostasis with clinical significance of
hemophilia.
56 LOCOMOTION Explain different mechanisms of transportation for
maintenance of cellular homeostasis
Understand the basis of development of membrane
potential across excitable membrane.
Know Nernst potential and its importance in generation
of membrane potential.
Comprehend different mechanisms responsible for the
genesis of membrane potential (role of channels,
carrier proteins).
Understand the mechanisms by which different factors
(stimuli) produce changes in membrane potential.
Draw different phases of action potential and explain
ionic changes occurring during each phase of action
potential.
22
Comprehend the response to the application of two
successive stimuli are given during different phases of
action potential (refractory period, its types and
importance).
Classify different types of nerve fibers.
Know generation of nerve impulse and its transmission
in different types of nerve fibers (myelinated and non-
myelinated nerve fibers) with their characteristics.
Know structural and functional changes taking place in
nerve fibers in case those are damaged.
Illustrate functional and histological differences in
different types of muscles.
Draw and label neuromuscular junction, the sequence
of events taking place during neuromuscular
transmission and factors affecting thereof.
Explain the motor unit and its physiological importance.
Appreciate the mechanism of transmission of signals
from the nerve fiber to different muscles. Know the
structure and different characteristics of three types of
muscle.
Appreciate the ionic and chemical basis of muscle
contraction.
Explain the energy expenditure during muscle
contraction.
Understand different phases of muscle contraction and
effect of multiple stimuli on different phases of muscle
contraction.
Comprehend clinical importance of neuromuscular
transmission in patients of myasthenia gravis.
Appreciate the characteristics and differences between
isometric and isotonic contraction, tetanization,
contracture remainder, rigor mortis etc.
Appreciate characteristics of smooth muscle
contraction with their physiological significance.
NERVE AND
MEMBRANE
POTENTIAL
MUSCLE
PHYSIOLOGY
58 IMMUNITY
23
List of Practical:
Module 1
Compound Microscope and study of Neubauer's chamber
RBC count by Neubauer's chamber.
WBC count-TLC
Platelet count. (Demonstration only)
Determination of Haemoglobin in the blood. (Sahili's method)
Red cell indices.
Estimation of haematocrit (PCV).
Estimation of ESR.
Determination of ABO & Rh blood groups.
Estimation of bleeding & clotting time.
DLC.
Osmotic fragility of RBC
Any other practical relevant to that Module
List of Case Based Learning (CBL):
PBL 1
Mr. Zeeshan, a 43 years old mess waiter, reported in medical OPD with complaints of
difficulty in standing for long duration while serving the meals, for last six months. His
general physical examination revealed normal pulse, blood pressure and temperature.
However, the doctor observed drooping of his eye lids. His symptoms ameliorated for
several hours by administering a test dose of neostigmine. Laboratory investigations
confirmed the presence of antibodies to nicotinic acetylcholine receptors in the blood
and end plate potentials recorded on electromyography were weak. CT scan chest
was normal. The physician managed the case conservatively by anticholinesterase
drugs and patient responded to the treatment very well.
Learning objectives:
To learn the physiological basis of:
Skeletal muscle contraction especially for sustained contractions while standing.
Transmission of motor signals to skeletal muscle in nerve fibers.
Neuromuscular transmission at NMJ.
Factors/drugs that effect transmission at NMJ.
Pathophysiology and treatment options of myasthenia gravis.
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 2
A 6-year-old boy is brought to the family physician after his parents noticed that he
had difficulty moving his arms and legs after a soccer game. About 10 minutes after
leaving the field, the boy became so weak that he could not stand for about 30 minutes.
24
Questioning revealed that he had complained of weakness after eating bananas, had
frequent muscle spasms, and occasionally had myotonia, which was expressed as
difficulty in releasing his grip or difficulty opening his eyes after squinting into the sun.
After a thorough physical examination, the boy was diagnosed with hyperkalemic
periodic paralysis. The family was advised to feed the boy carbohydrate-rich, low-
potassium foods, give him glucose-containing drinks during attacks, and have him
avoid strenuous exercise and fasting.
Learning objectives:
To understand Frank-Starling’s law as applied to skeletal muscle mechanics.
To correlate electrolyte influences on skeletal muscle contraction.
To know details of contractile elements of skeletal muscles.
To gain insight into skeletal muscle fuel metabolism.
To understand force velocity relationship of skeletal muscles.
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 3
A 32-year-old woman presents to her primary care physician’s office with difficulty
chewing food. She states that when she eats certain foods that require significant
amount of chewing (e.g., meat), her jaw muscles become weak and “tired.” After a
period of rest, her jaw muscles regain their strength until she eats again. The patient
is diagnosed with myasthenia gravis and is started on neostigmine, an
acetylcholinesterase (AChE) inhibitor.
Learning objectives:
To define concepts of chronaxie and rheobase.
To differentiate between fast and slow muscle fibers characteristics.
To compare skeletal, smooth and cardiac muscle fiber properties.
To compare neuromuscular transmission of skeletal and smooth muscles.
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 4
25
A 21-year-old man presents to a rural emergency center with a 1-day history of
progressive stiffness of the neck and jaw, difficulty swallowing, stiff shoulders and
back, and a rigid abdomen. Upon further questioning, the patient reports that the stiff
jaw was the first symptom, followed by the stiff neck and dysphagia. On examination
he is noted to have stiffness in the neck, shoulder, and arm muscles. He has a grimace
on his face that he cannot stop voluntarily and an arched back from contracted back
muscles. The physician concludes that the patient has “tetanic” skeletal muscle
contractions. A 3-cm laceration is noted on his left foot. The patient reports sustaining
the laceration about 7 days ago while he was plowing the fields on his farm. He has
not had a tetanus booster. He is diagnosed with a tetanus infection, and an injection
of the tetanus antitoxin is given.
Learning objectives:
To understand pathophysiology of tetanic muscle contractions.
To differentiate between concepts of tetany, tetanus and tetanization.
To understand mechanisms underlying muscle fatigue.
To gain insight into latch mechanism of smooth muscle contraction.
To identify factors relating to efficient smooth muscle contraction.
To elaborate hormonal factors governing smooth muscle contraction.
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 5
A 14-year-old girl complained of fatigue and loss of stamina. Her appetite was
marginal, as she was very conscious of maintaining her body weight at 96 pounds.
Her monthly menstrual flow was always heavy and long, from its onset at twelve years
of age. Relevant laboratory findings included the following:
Hematocrit (Hct) 28%
Hemoglobin (Hgb) 9 g/dL
Iron 16 µg/dL
Bone marrow iron Absent
Erythrocytes Small and pale
Suggested treatment for this patient of iron deficiency anemia included ferrous sulfate
or ferrous gluconate for six months orally between meals, since food may reduce
absorption. A well-balanced diet was also suggested, as well as a gynecological
examination.
26
Learning objectives:
To identify various stages of erythropoiesis along with role of various growth and
differentiation inducers.
To develop conceptual understanding of erythropoiesis regulation.
To develop a mind map of iron metabolism in human body.
To critically reflect on working definition of anemia.
To interpret clinical manifestations of anemia.
To identify hematologic picture in various types of anemia.
To elaborate pathophysiology of various types of anemias.
To develop a working knowledge of polycythemia.
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 6
A 36 years lady consulted her physician with complaints of generalized weakness,
easy fatigability for the last one year and recent development of sore throat and fever
for 3 days. Her physical examination revealed pulse 98/min, temperature 101 F,
respiratory rate 18/min and blood pressure 120/80 mm Hg. Her throat was red and
congested. Her personal history revealed birth of five children in last 8 years. Her lab
investigation reveal Hb 8.2 gm/dl with hypochromic microcytic RBCs (MCV=62 fl, MCH
21 pg, MCHC 27%), TLC was 16,200/ul with 82% neutrophils, 12% lymphocytes, 4%
monocytes, 1% basophils and 1% eosinophils. She was advised oral antibiotics for
one week and antianemics for 03 months.
Learning objectives:
To learn the physiological basis of manifestations of illness and body’s immune
response.
To learn the role of various leucocytes in acute bacterial infections.
To correlate fever and increased pulse rate with body’s immune response.
To know the physiological basis of:
Inflammation
Pallor and tachycardia
Weakness & fatigability
To understand the causes of anemia, leucocytosis and deranged DLC.
To learn the mechanism of development of leucocytosis.
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
27
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 7
A 10 years old boy came to OPD with high grade fever, sore throat and dysphagia to
solids for past 04 days. History revealed that he had multiple similar episodes over
past 02 yrs.
On examination, tonsils were swollen and enlarged. Lab. investigations were as under:
Count Showed Normal Values
Neutrophils 80% (60-65%)
Eosinophils 1-5% (1-5%)
Basophils 0-1% (0-1%)
Lymphocytes 30% (20-40%)
Monocytes 1-6% (1-6%)
Lab report shows “neutrophilia”. He was diagnosed as a case of “streptococcal
tonsillitis”.
Learning objectives:
To develop answers to following queries:
1. Which type of immunity was generated in this patient?
2. Why neutrophil count is increased in this patient? What is their role in this
infection?
3. What are the classical signs of inflammation in above patient?
4. What is the role of helper T- Lymphocytes in streptococcal tonsillitis?
5. How complement system is activated in above scenario?
6. What are types based on morphology of W.B.C’s?
7. Describe briefly the functions of different types of W.B.C.s.
8. What is the role of macrophage/antigen presenting cells in immunity?
9. What are different immune deficiency diseases?
10. What are autoimmune diseases?
11. Discuss briefly Immunization?
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
28
MODULE-I
Section-III
Biochemistry
29
Summary:
Code Y1M1
Name Biochemistry
Duration 10 weeks
Broad Themes of Module
(Theme: a subject that is being
integrated a majority of time of
module)
1. Introduction
2. Cells and genetics
3. Blood
4. Loco motor (Upper limb)
Subject Themes
Chemistry of Protein
Nucleotides and Nucleic Acid
Porphyrins & Hemoglobin
Biochemistry of Cell & Biological
membrane
Prerequisite Module None
Mode of Information Transfer:
MIT
Lectures
Tutorials (PTT)
CBL
Practicals
Class tests
Biochemistry learning outcomes:
57 Biochemistry of
Cell & Biological
membrane
At the end of the learning of this set, the learners will be
able to
Illustrate and categorize different types of cytological
techniques.
Demonstrate basic techniques to study cell, separation
of materials through centrifugation, chromatography and
microscopy.
Differentiate cell organelles, their structure and
biochemical functions (Mitochondria, Ribosomes, Golgi
Apparatus, Endoplasmic Reticulum, Lysosomes,
Peroxisomes) and associated disorders.
Describe detailed chemical composition of Cell
Membrane and its biochemical significance.
Explain chemistry of receptors and signal transduction
along with the Biochemistry of membrane transport
30
mechanism, active transport, passive transport, simple
and facilitated diffusion.
Chemistry and
structure of
nucleosides and
nucleotides:
On completion of this set the learners will be able to
Appreciate the detailed Chemistry and structure of
nucleosides and nucleotides with their biochemical role,
their derivatives along with their significance.
Describe the Synthetic derivative of purine and
pyrimidines, and their role in health and diseases.
Understand types of Nucleic acids, their structure and
functions.
58 Proteins: By the time the learners finish the course they will be
able to
Explain the structure, functions and classification of
amino acids along with their buffering role in human
body in pH maintenance.
Describe Definitions, Biochemical importance and
classification of proteins based on, Physiochemical
properties, Functional, Nutritional, and structural basis.
Understand the details of Structure of proteins and their
significance.
Contrast the techniques for separation of proteins e.g.
salting out, Electrophoresis, Chromatography, and
Centrifugation.
Explain Immunoglobulins and their biochemical
significance.
Describe chemistry and functions of Plasma proteins &
their clinical significance.
59 Prophyrins and
hemoglobin:
At the end of this set, the learners will be able to
Explain Chemistry and biosynthesis of porphyrins and
their disorders (Porphyrias).
Describe Structures, functions and types of
haemoglobin, Oxygen binding capacity of haemoglobin,
factors affecting and regulating the oxygen binding
capacity of haemoglobin.
Detail the concepts of Degradation of heme, formation
of bile pigments, its types, transport and excretion,
Hyperbilirubinimea, their biochemical causes and
differentiation.
Discuss jaundice and its types, and kernictrus.
understand Haemoglobinopathies (Hb-S, thalassaemia
etc) and their biochemical causes.
31
List of Practical:
List of Case Based Learning (CBL):
Topic: Cell (Leber Hereditary Optic Neuropathy LHON):
A 27-year-old boy presented to ophthalmic OPD with rapid deterioration of vision in
both eyes. He felt blurring of central in right eye eight weeks back which gradually
increased and now developed similar symptoms in other eye. His visual acuity is 6/36
in right and 6/12 in left eye. On fundus examination optic disc showed edematous
retinal nerve fiber layer and telangectatic vessels. A CT scan brain did not reveal any
inflammatory or space occupying lesion before or after optic chiasma. These findings
led the ophthalmologist to suspect LHON.
The buccal mucosa sample was sent to human molecular biology laboratory for
identification of genetic mutation (if any) leading to the condition and confirmation of
provisional diagnosis. The scientists in the lab separated mitochondria from the cells
by disrupting the cells and centrifugation at 700g once and at 12000 g twice for 15 and
5 minutes. Sequencing of MT-ND1, MT-ND4, MT-ND4L and MT-ND6 genes was
carried out and MT-ND1 was found to have point mutation. The diagnosis of LHON
S. No Practical Topics
1. Introduction to use of Laboratory Equipment
Glassware
Spectronic 20
Microlab
2. Introduction to use of Laboratory Equipment
Incubator
Water Bath
Hot Oven
3. Introduction to use of Laboratory Equipment
Centrifuge Machine
Electronic Balance
pH Meter
4. Types of Solutions, their preparation and clinical significance
5. Experiments on Proteins Qualitative Analysis - I
Biuret Test
Millon’s Test
6. Experiments on Proteins Qualitative Analysis - II
Ninhydrin Test
Aldehyde Test
7. Experiments on Proteins Qualitative Analysis - III
Sulphur Test
Xanthoproteic Test
32
was confirmed. MT-ND1 is the gene spanning 3,307 to 4,262 of mtDNA and encodes
for NADH dehydrogenase of ETC.
RELATED INVESTIGATIONS:
Test Name Result
Visual field testing Central vision deterioration
CT Scan Brain Normal study
Mitochondria are one of the most important cell organelles and work mainly as
powerhouse of the cell. Many of the enzymes of mitochondrial function are encoded
by its own DNA called mtDNA which is inherited purely from mothers. Mutations and
their transfer to next generation is found not only in nuclear DNA but also in mtDNA.
Several diseases have been found to be caused by mitochondrial dysfunction which
is due to mutations in mtDNA and examples include lactic acidosis, mitochondrial
encephalopathy, stroke-like-episodes, LHON and Leigh syndrome.
LEARNING OBJECTIVES:
1. Structure and function of different organelles of the cell.
2. Structure, function and inheritance of mitochondria
3. Techniques for isolation and study of cell components and their importance in
clinical medicine
REFERENCE BOOKS:
1. Lippincott’s textbook of Biochemistry
2. Harper’s text book of Biochemistry
3. Davidson’s Practice of Medicine
Topic: Cell (I- Cell Disease- lysosomal targeting problems)
A female infant with a normal delivery after 38 weeks and normal intrauterine life
showed the physical findings characteristic of I-cell disease. She manifested gargoyle
face, progressive psychomotor retardation, and increased serum levels of lysosomal
enzymes with decreased activities in peripheral blood lymphocytes. The diagnosis
was made by the analyses of lysosomal enzymes. The child died at the age of 2 years
and 3 months due to respiratory insufficiency. By electron microscopy, various-shaped
membrane-bound vacuoles were observed in the cytoplasm of various cells such as
hepatocytes, myocardial muscle cells, epithelial cells of the renal glomeruli, proximal
renal tubular cells, fibroblasts, and chondrocytes. By histochemical analyses we found
that these intracytoplasmic storage vacuoles contained glycosaminoglycan and
proteoglycan.
In general, peripheral blood smears are performed to obtain information with regard to
various morphological features as an aid in the diagnosis of infection or malignancy.
This report presents a patient with I cell disease (inclusion cell disease), a fatal
33
lysosomal storage disorder caused by a defect in an enzyme responsible for the
transfer of mannose-6-phosphate ligands to precursor lysosomal enzymes. As a
consequence, most lysosomal enzymes are transported outside the cell instead of
being correctly targeted into the lysosomes, resulting in the storage of
macromolecules in lysosomes. I cell disease, with its heterogeneous clinical
presentation, can be diagnosed by the presence of intracellular vacuole-like inclusions
in lymphocytes and fibroblasts, high serum lysosomal enzyme activities, and a defect
of N-acetylglucosamine-1-phosphotransferase. This report describes the
morphological aspects of peripheral lymphocytes in a blood smear of a patient, the
first clue to the final diagnosis of I cell disease. The observed vacuole-like inclusions
in lymphocytes of this patient were negative for periodic acid Schiff (PAS) and Sudan
black B staining, in contrast to earlier reports.
LEARNING OBJECTIVES:
1. Structure and function of different organelles of the cell.
2. Structure, function and pathology of lysosomes
3. Enzyme processing and targeting to organelles
REFERENCE BOOKS:
1. Lippincott’s textbook of Biochemistry
2. Harper’s text book of Biochemistry
3. Davidson’s Practice of Medicine
34
Topic: Nucleic acids (Acute Gout):
A moderately obese 54-year-old male appeared at the emergency department
complaining of severe pain of 10 hours’ duration in his left big toe. He stated that he
was a regular consumer of meat and soda (alcohol and sea food consumption are also
risk factors). He had no other significant medical history. On examination, his left big
toe was found to be red and markedly swollen around the metacarpophalangeal joint,
and exquisitely sensitive. There was no evidence of arthritis elsewhere. Because of
the history and location of the affected joint, the attending physician suspected that
the patient was having an attack of acute gout. She ordered a number of lab tests,
including a white cell count, determination of serum uric acid, and x-ray examination
of the affected joint. The x-ray findings were non-specific; no indication of chronic
arthritis was evident. Findings of other tests are tabulated below. Under local
anesthesia, arthrocentesis was performed on the affected joint and a small amount of
synovial fluid withdrawn and sent to the laboratory for detection of cells and crystals.
Typical needle-shaped crystals of MSU showing negative birefringence were detected
in the synovial fluid.
LAB INVESTIGATIONS:
Test Name Result Normal Values
Serum Uric acid 680 µmol/L Children 120-330
µmol/L
Adult Male 210-430
µmol/L
Adult Female 150-360
µmol/L
ESR 60 mm 1 – 10 mm in 1st hour
WBC Count 11.0 x 10 9 /
L
4.0 x 11.0 x 10 9 / L
RA Factor Negative Negative
Gout is a disease caused by hyperuricemia mostly due to genetic factors while diet
and lifestyle play a minor role in its causation. Uric acid is an end product of purine
metabolism and as it is already near its saturation limit in plasma, minor increase due
to mostly under-excretion from kidney or overproduction leads to its deposition in
crystal form mostly where the solvent is stagnant like synovial fluid of relatively
immobile joints. This crystallization appears first at the most immobile and coldest fluid
body, typically big toe joint space and typically at night because temperature is further
lower at night time and due to sleep and mobility is also further decreased. Crystals in
a smooth lubricated environment play havoc and cause acute inflammatory response
leading to severe pain, redness, warmth and loss of function locally. Moreover, uric
acid deposition in other soft tissues leads to formation of tophi.
35
LEARNING OBJECTIVES:
1. Structure and chemistry of nucleosides and nucleotides.
2. Functions of nucleotides.
3. The biochemical basis of various clinical features
REFERENCE BOOKS:
1. Harper’s text book of Biochemistry.
2. Davidson’s Practice of Medicine.
3. Lippincott’s textbook of Biochemistry
Topic: Nucleic Acids (ADA Deficiency)
A little girl aged 11 months was brought by her parents to a children's hospital. She
had had a number of attacks of pneumonia and thrush (oral infection usually due to a
fungus Candida albicans) since birth. The major findings of a thorough workup were
very low levels of circulating lymphocytes (i.e. severe lymphopenia) and low levels of
circulating immunoglobulins. The attending pediatrician suspected SCID. Analysis of
a sample of red blood Cells revealed a low activity of ADA and very high level (about
50 times normal) of dATP. This confirmed the diagnosis of SCID due to deficiency of
ADA, the enzyme that converts adenosine to inosine.
The deficiency of ADA is inherited as autosomal recessive and accounts for almost
15% cases of SCID. T lymphocytes express high activity of enzyme normally. Lack of
ADA activity leads to accumulation of adenosine and dATP which is toxic to T cells.
Secondarily B lymphocytes are also affected and lead to impaired humoral immunity.
Defective immune system allows different opportunistic infection to occur and recur.
An example of acquired immunodeficiency is AIDS. Such conditions can be treated
by, antibiotics, fortifying immune system by immunoglobulins and treating the root
cause.
LEARNING OBJECTIVES:
Synthesis, ingestion and fate of nucleotides in human body
Role of Nucleotides in DNA synthesis and outcome of ADA deficiency
The biochemical basis of various clinical features
REFERENCE BOOKS:
Harper’s text book of Biochemistry. (Page 616)
Davidson’s Practice of Medicine.
Lippincott’s textbook of Biochemistry
Topic: Protein Chemistry (Creutzfeldt Jakob Disease)
A 70 years old man reported for the third time in last 3 weeks in medical OPD with
progressive difficulty in walking. He had muscle stiffness, twitching and involuntary
jerks in both legs. This patient was being treated by psychiatrists for depression,
agitation, mood swings, memory loss and thought problems for 2 weeks immediately
preceding the onset of current symptoms. Taking into account the rapid progression
and pattern of symptoms he was provisionally diagnosed as a case of Creutzfeldt
36
Jakob Disease. The findings of MRI, EEG and spinal tap were consistent with the
diagnosis. Patient was put on supportive symptomatic treatment and relatives were
counseled.
The protein misfolding which is contagious from abnormal to normal protein leads to
prion diseases. Prion diseases, such as Creutzfeldt-Jakob disease, occur when prion
protein, which is found throughout the body but whose normal function isn't yet known,
begins folding into an abnormal three-dimensional shape. This shape change
gradually triggers prion protein in the brain to fold into the same abnormal shape.
Through a process scientists don't yet understand, misfolded prion protein destroys
brain cells. Resulting damage leads to rapid decline in thinking and reasoning as well
as involuntary muscle movements, confusion, difficulty walking and mood changes.
LEARNING OBJECTIVES:
Chemistry of amino acids
Levels of protein folding and how it is carried out
Abnormalities in protein structure/folding
REFERENCE BOOKS:
Lippincott’s illustrated reviews of Biochemistry
Harper’s text book of Biochemistry.
Davidson’s Practice of Medicine.
Topic: Protein Chemistry (Emphysema- α 1 antitrypsin deficiency)
A 68-year-old Caucasian man with a 25 pack-year smoking history presented with
new-onset dyspnea on exertion in the setting of workplace dust exposure. During his
evaluation, he was found to have α1-antitrypsin deficiency with evidence of
development of pulmonary emphysema. Workplace spirometric monitoring over 10
years of surveillance for an on-the-job respirator fit program demonstrated a sharp
downward slope in forced expiratory volume in one second, or FEV1, during his
periods of most significant dust exposure, which was attenuated after discontinuation
of his workplace exposure.
Blood and other body fluids contain a protein, α1-antitrypsin (α1-AT, A1AT, currently
also called α1-antiproteinase), that inhibits a number of proteolytic enzymes (also
called proteases or proteinases) that hydrolyze and destroy proteins. α1-AT comprises
more than 90% of the α1-globulin fraction of normal plasma. α1-AT has the important
physiologic role of inhibiting neutrophil elastase ––a powerful protease that is released
into the extracellular space, and degrades elastin of alveolar walls, as well as other
structural proteins in a variety of tissues. Most of the α1-AT found in plasma is
synthesized and secreted by the liver. In the normal lung, the alveoli are chronically
exposed to low levels of neutrophil elastase released from activated and degenerating
neutrophils. This proteolytic activity can destroy the elastin in alveolar walls if
unopposed by the action of α1-AT, the most important inhibitor of neutrophil elastase.
Because lung tissue cannot regenerate, emphysema results from the destruction of
37
the connective tissue of alveolar walls. Smoking causes the oxidation and subsequent
inactivation of that methionine residue, thereby rendering the inhibitor powerless to
neutralize elastase. Smokers with α1-AT deficiency, therefore, have a considerably
elevated rate of lung destruction and a poorer survival rate than nonsmokers with the
deficiency.
LEARNING OBJECTIVES:
Fibrous proteins
Normal structure and synthesis of collagen and elastin
Abnormalities of fibrous proteins
REFERENCE BOOKS:
Lippincott’s textbook of Biochemistry
Harper’s text book of Biochemistry. (Page 616)
Davidson’s Practice of Medicine.
Topic: Porphyrins and Hemoglobin (Hepatitis A)
A 31 years old man presented with jaundice, nausea, anorexia, restlessness, lethargy,
fatigue and dark color urine for three days. Color of his stools was normal and there
was no itching on the skin. He was not having pyrexia and intensity of jaundice was
not of fluctuating type. There was no history of significant weight loss. There was mild
pain in the right hypochondrium. He did not have any known hemoglobinopathy. He
was non-alcoholic and there was no history of use of any drug recently.
Ultrasonography showed no fatty infiltration of liver.
Lab Investigations:
S/N Test Result Reference values
1 Serum Total bilirubin 42 µmol/L Adult 2-17µmol/L
2 Conjugated Bil (direct) 10 µmol/L 0-4 µmol/L
3 Unconjugated Bil (indirect) 32 µmol/L 0-13 µmol/L
4 Urine bilirubin Present Absent
5 Urinary urobilinogen Increased 0-4 mg/ 24 hrs
6 Serum ALT 2800 U/L Male Upto 42 U/L Female upto 32
7 ALP 54 U/L 132-365 U/L adults Levels higher in children
8 AST 40 U/L Upto 37 U/L
9 GGT 32 U/L Upto 30 U/L
10 Plasma haptoglobin normal -
11 Serum albumin 33 g/dL 35-50g/L
12 Hep B surface antigen (HBsAg) in
serum
Negative Negative
13 Anti HCV antibody (anti HCV Ab) in serum
Negative Negative
14 Anti Hep A antibody (IgM) Positive Negative
38
Hepatitis A is a viral infection and resultant inflammation of the liver caused by
Hep A virus. Unlike Hep B and C this virus does not cause chronic disease and causes
acute severe and self-limiting hepatitis making the patient immune against this virus
for rest of his life. Unlike Hep B and C which are transmitted through blood or sex, hep
A virus is transmitted through orofecal route. Senescent RBCs are broken in spleen
and heme and globin separated and globin degraded into amino acids in fixed
leukocytes of spleen. Heme is oxidized to biliverdin and bilirubin which leaves
reticuloendothelial system and travel in plasma in protein bound form. Hepatocytes
uptake and conjugate bilirubin for excretion from body in biliary route. Viral infection of
liver affects not only conjugation but also other functions of the liver like albumin
synthesis. This results in jaundice hypoalbuminemia and edema (later in chronic cases
only), though liver has got the capability to handle 300 times more bilirubin in normal
state and a capacity of hepatocyte regeneration. Chronic cellular damage, fibrosis and
regeneration leads to liver failure and a condition called cirrhosis of liver which is
leading cause of death due to hep B and C infections.
LEARNING OBJECTIVES:
Synthesis and degradation of heme
Metabolism of bilirubin in body
Role of hepatocyte in bilirubin handling and its diseases (inherited and acquired)
REFERENCE BOOKS:
Lippincott’s textbook of Biochemistry
Harper’s text book of Biochemistry
Davidson’s Practice of Medicine
39
MODULE-II
Section-I
Anatomy
40
Summary:
Code Y1M2
Name Anatomy
Duration 10 weeks
Broad Themes of Module
(Theme: a subject that is being
integrated a majority of time of
module)
1.Thorax
2.Cardiovascular system
Subject Themes
Gross anatomy
Thorax
Embryology
Embryonic period, Fetal period
Placenta and fetal membranes
Twining
CVS
Histology
Circulatory System
Immune system
General Anatomy
Lymphatic system
Circulatory system
Prerequisite Module Y1M1
Mode of Information Transfer:
MIT
Lectures
Dissection
Tutorials (PTT)
CBL
Practicals
Class tests
41
Anatomy learning outcomes:
Anatomy
MBBS - Y1M2
PROPOSED LEARNING OBJECTIVES AND SUGGESTED MITs (mode of
information transfer)
GENERAL ANATOMY
S.NO. TOPICS LEARNING OBJECTIVES MIT
Circulatory
System
Discuss the general structural plan of
blood vessels.
Classify blood vessels on anatomical and
functional basis
Explain each type of blood vessel and
give examples
Discuss general plan of systemic,
pulmonary and coronary circulatory
system.
Discuss general plan of portal system
with brief accounts of arterial and venous
portal systems giving examples.
Differentiate between anatomic end
arteries and functional end arteries giving
examples
Define anastomosis; describe various
types of anastomosis with examples and
their clinical significance.
Describe blood supply of arteries and
veins.
Explain the importance of collateral
circulation
LGIS
(Large
group
interactive
session)
Lymphatic
System
Discuss general plan of the lymphatic
circulatory system of the body.
Explain the mechanism of formation and
flow of lymph.
Enumerate the factors responsible for
flow of lymph.
Discuss the structural plan of lymphatic
vessels.
Describe the structural plan of lymph
nodes and their role in lymphatic system
Enumerate the capsulated lymphoid
organs
LGIS
42
Correlate the role of lymphatic system
with spread of cancer and infection.
Correlate the role of lymphatic system
with development of edema.
HISTOLOGY
Circulatory
System
KNOWLEDGE: Discuss the general histological plan of blood vessels. Describe and compare the histological structure of: Elastic artery Muscular artery Arteriole Different types of Capillaries Venule Medium sized vein Large vein Describe histological changes in intima in atherosclerosis or arteriosclerosis SKILLS: Identify elastic artery, muscular artery and large vein under light microscope and enlist at least two identification points for each. Draw labelled diagram of elastic artery, muscular artery and large vein with the help of eosin and hematoxylin pencils on the histology notebook
LGIS
Lab
Immune
System
KNOWLEDGE:
Enumerate the cells of immune system.
Describe the structure of primary and
secondary lymph nodule.
Describe the histological features of:
Lymph node
Thymus
Spleen
Tonsils
Compare the histological structure of
thymus, lymph node, spleen and tonsils.
SKILLS:
Identify slides of lymph node, thymus,
spleen and palatine tonsils under light
microscope and enlist at least two
identification points for each.
LGIS
Lab
43
Draw labelled diagram of lymph node,
thymus, spleen and palatine tonsils with
the help of eosin and hematoxylin pencils
on the histology notebook
EMBRYOLOGY
KNOWLEDGE
Embryonic
period
(3rd to 8th week)
Define neurulation
Describe process of formation of neural
plate, neural tube and neural crest cells.
Enlist derivatives of:
Surface ectoderm
Neurectoderm
Neural crest
Intraembryonic mesoderm (paraxial,
intermediate, lateral plate)
Endoderm
Describe somitogenesis and early
differentiation of somites.
Describe the development of
intraembryonic coelom
Describe the folding of the embryo in the
longitudinal plane and correlate it with its
consequences
Describe the folding of the embryo in the
horizontal plane and correlate it with its
consequences
Describe relocation of connecting stalk to
the anterior abdominal wall and its
differentiation into umbilical cord.
Describe the process of formation of
blood and blood vessels and differentiate
between angiogenesis and
vasculogenesis
Explain the embryological basis of the
neural tube defects like anencephaly and
spina bifida
Define hemangioma and explain its
embryological basis
LGIS
Fetal period
(third month to
birth)
Define fetal period
Enumerate various methods to estimate
fetal age
Describe factors affecting fetal growth
LGIS
44
Enlist the external body landmarks from
third month to birth
Define intrauterine growth retardation
Placenta and
fetal
membranes
Enlist types of chorion and give fate of
each.
Enlist types of decidua and give fate of
each.
Enumerate the fetal and maternal
components of placenta.
Differentiate between stem, anchoring
and terminal villi
Enumerate the layers forming placental
barrier
Describe placental circulation (maternal
and fetal)
Enumerate functions of the placenta
Enlist the features of maternal and fetal
surfaces of placenta.
Enumerate placental changes by the end
of pregnancy
List fetal membranes and their functions
Describe production, circulation and
significance of the amniotic fluid.
Describe the development of umbilical
cord
Define preeclampsia and correlate it with
trophoblastic differentiation
Describe the embryological basis of
amniotic bands, umbilical cord defects,
erythroblastosis fetalis and hydrops
fetalis
Define poly and oligohydramnios.
Enumerate their embryological causes
and adverse effects
LGIS
Twining
Name two basic types of twins.
Describe the mechanism behind
occurrence of dizygotic & monozygotic
twins.
Discuss the possible arrangements of
fetal membranes in case of monozygotic
twins.
Discuss fetus papyraceus, twin
transfusion syndrome and conjoined
LGIS
45
twins on basis of knowledge of
embryology
CVS-I
(Heart)
Explain the formation of heart tube.
Describe the mechanism of cardiac
looping
Enlist the parts of heart tube and their
definitive derivatives
Explain the embryological basis of
dextrocardia
Describe histogenesis of heart
Describe contribution of bulbs cordis and
sinus venosus to the development of
heart
Explain different methods of septal
formation
Describe division of atrioventricular canal
Explain the embryological steps involved
in formation of interatrial septum
Correlate the internal differentiation of
right atrium with internal structure of right
atrium of definitive heart
Describe the formation of left atrium and
pulmonary veins
Explain the division of conotruncus
Describe the formation of interventricular
septum and identify sources of its
different parts
Describe the development of valves of
heart
Describe the development of conducting
system of heart
Explain the embryological basis of the
following heart defects:
Various forms of atrial septal defects
Ventricular septal defects
Fallot’s tetralogy
Transposition of great vessels
Persistent truncus arteriosus
Pulmonary stenosis
Aortic stenosis
Tricuspid atresia
Hypertrophic right and left heart
syndromes
LGIS
46
Ectopia cordis
CVS-II
(Arterial
system)
Define aortic arches
Explain the development and fate of
aortic arches
Enumerate the developmental sources of
aorta
Justify the relationship of recurrent
laryngeal nerves on the basis of your
knowledge of embryology
Enumerate the segmental branches of
dorsal aortae & give their fate
Explain the fate of vitelline & umbilical
arteries
Explain the development of arteries of the
limbs
Enumerate & explain the congenital
anomalies of arterial system which
include:
Patent Ductus Arteriosus
Coarctation of aorta
Double aortic arch
Right aortic arch
Abnormal origin of the Right Subclavian
Artery
An interrupted aortic arch
LGIS
CVS-III
(Venous
system)
Explain the fate of vitelline, umbilical and
cardinal veins
Explain the development of inferior vena
cava
Explain the development of superior vena
cava
Correlate following anomalies of venae
cavae with their development
Double Inferior Vena Cava
Absence of Inferior Vena Cava
Left Superior Vena Cava
Double Superior Vena Cava
Explain the development of lymphatic
system
LGIS
47
CVS-IV
(Fetal
circulation)
Describe fetal circulation
Describe following fetal circulatory
changes at birth:
Closure of the umbilical vein and ductus
venosus
Closure of the ductus arteriosus
Closure of the oval foramen
LGIS
SKILLS
Embryology
Identify the structures related to general
development and development of
cardiovascular system on given models
and diagrams
SGD
(Small
group
discussion)
GROSS ANATOMY
THORAX
KNOWLEDGE:
Thoracic wall
(Bones and soft
parts)
Enumerate the bones contributing in
thoracic cage
Describe the bony framework of the
thoracic cage with topographic placement
of each bone
Identify structures forming the thoracic
inlet and outlet/costal margin
Discuss sternum, with reference to its
parts and attachments
Define sternal angle and discuss its
importance in clinical practice
Classify ribs into true and false
Determine side of ribs
Discuss parts of a typical rib
Differentiate between typical and atypical
ribs
Identify typical thoracic vertebra, describe
its different parts and identification points
Compare a typical and atypical thoracic
vertebra
Describe the joints of thorax with
reference to their types and movements
Discuss and differentiate between the
pump handle and bucket handle
movements and their effect on diameters
of chest cavity
SGD and
dissection
48
Discuss the role of the accessory
respiratory muscles during inspiration
and expiration
Enlist the contents of a typical intercostal
space including muscles, nerves and
vessels
Describe the attachments, actions and
nerve supply of thoracic muscles
Discuss the arterial supply and venous
drainage of the thoracic wall.
Discuss the course and distribution of a
thoracic spinal nerve
Identify and justify the most suitable site
for an invasive procedure in an intercostal
space
Analyze the clinical scenario related to
blunt chest trauma and its complications
with anatomical reasoning
Diaphragm
Describe the parts, attachments and
nerve supply of diaphragm
Enlist the apertures in diaphragm with
their levels and structures passing
through each
Discuss the role of diaphragm and
scalene muscles in increasing the vertical
diameter of thoracic cavity
Analyze the clinical scenario related to
diaphragmatic hernia and phrenic nerve
lesions with anatomical reasoning
Correlate the tip of shoulder pain with
irritation of diaphragm
SGD and
dissection
Pleura
Enumerate and discuss various parts of
pleura and identify their locations
Describe the pleural reflections and
recesses
Describe the innervation of the visceral
and parietal layers of the pleura
Discuss the clinical significance of
reflections and recesses of pleura and
pleural cavity
Define pleural effusion, pneumothorax,
empyema and hemothorax
SGD and
dissection
49
Enlist the anatomical structures
encountered in chest tube insertion
Lungs
Identify the side of lungs
Enlist borders and surfaces of lungs
Discuss the topographic arrangement of
structures in hilum of each lung
Discuss the blood supply, nerve supply ,
lymphatic drainage and relations of
various surfaces of both lungs
Define bronchopulmonary segments.
Enlist them in each lung. Discuss their
significance.
Discuss with anatomical reasoning, the
clinical presentation of bronchogenic
carcinoma and lung trauma
SGD and
dissection
Mediastinum
(General
outline)
Define mediastinum
Describe how the mediastinum is further
divided
Enlist the structures lying at the level of
transverse thoracic plane
Outline the boundaries of each division of
mediastinum
Enumerate contents of each division of
mediastinum
SGD and
dissection
Anterior
mediastinum
Outline the boundaries of anterior
mediastinum
Enumerate the contents of anterior
mediastinum
Describe the shape, relations and blood
supply of thymus
SGD and
dissection
Superior
mediastinum
Outline the boundaries of superior
mediastinum and describe its general
topography
Enumerate the contents of superior
mediastinum
Identify carina at the site of bifurcation of
trachea into main principal bronchi
Describe immediate relations, blood and
nerve supply of thoracic part of trachea
SGD and
dissection
50
Justify the right bronchus being the most
probable site of foreign body impaction in
respiratory tract
Describe the orientation, relations and
branches of arch of aorta
Describe the formation, relations and
tributaries of superior vena cava and
brachiocephalic veins
Determine the site of ligamentum
arteriosum and its relation to left recurrent
laryngeal nerve
Describe the origin, course, relations and
distribution of both phrenic nerves
Analyze the clinical scenarios related to
compression of trachea and
damage/irritation of phrenic nerve based
upon your knowledge of Anatomy
Posterior
mediastinum
Outline the boundaries of posterior
mediastinum and describe its general
topography
Enumerate the contents of posterior
mediastinum
Describe the relations and branches of
descending aorta
Describe the course, relations and
constrictions of thoracic part of
esophagus
Discuss the reason behind esophageal
varices in case of portal hypertension
Describe the thoracic duct with reference
to its formation, course, tributaries,
termination and area of drainage
Analyze the clinical scenarios related to
chylothorax with the help of your
knowledge of Anatomy
Describe the course, relations and
distribution of both vagus nerves in thorax
Discuss the azygos system of veins with
reference to formation, course, relations,
tributaries and area of drainage of both
azygos and hemiazygos veins
Discuss the role of azygos vein in case of
caval obstruction
SGD and
dissection
51
Identify the lymph nodes in the posterior
mediastinum
Define splanchnic nerves and identify the
location of thoracic sympathetic chain
Pericardium
Enumerate various layers of pericardium
Describe the gross features of fibrous
pericardium
Describe the gross features of serous
pericardium (both parietal and visceral
layers)
Describe the reflections of parietal and
visceral pericardium resulting in formation
of transverse and oblique sinuses
Identify the locations of pericardial
sinuses
Describe the surgical significance of the
Transverse Pericardial Sinus
Discuss the innervation of various layers
of the pericardium
Define pericarditis and pericardial
effusion
Identify the best location for and enlist the
anatomical structures encountered in
pericardiocentesis
SGD and
dissection
Heart
Describe anatomical position, borders,
surfaces, apex and base of heart
Describe external features of the heart
Describe internal structure of various
chambers of heart
Compare the functional anatomy of right
and left ventricles
Describe structure of various valves of
heart
Enumerate the structures comprising the
cardiac skeleton and describe its
significance
Describe the arterial supply of heart
Explain the basis of right or left
dominance of heart
Describe the venous drainage of heart
Describe nerve supply of heart
Define angina pectoris, myocardial
infarction and cardiac tamponade
SGD and
dissection
52
Describe variations of coronary arteries in
context of myocardial infarction
Justify the chest pain, left upper limb pain,
jaw pain and epigastric discomfort as
presenting complaint of ischemic heart
disease with anatomical reasoning
SKILLS:
Gross Anatomy
of Thorax
Identify muscles, bones, ligaments,
nerves, vessels, organs and their parts
located in thorax:
on a cadaver after performing dissection
on prossected specimens
on provided models
SGD and
dissection
Surface
marking
Identify the important bony landmarks of
thorax and mark them on a subject.
Mark the borders of lungs, pleural
reflections, borders and apex of heart,
valves of heart, thoracic duct, esophagus,
trachea, main vessels and nerves of
thorax on the given subject
SGD and
Skills lab
Imaging of
head and neck
Identify the bones of thorax, aortic
knuckle, borders of heart, lungs, trachea,
hilar shadows, diaphragm and its
recesses on chest radiographs
SGD and
skills lab
List of Practical Histology (Anatomy):
Cardiac muscle
The Circulatory System-I
The Circulatory System-II
The Circulatory System-III
Problem / Case Based Learning, Scenarios:
CBL Case-1
Forty years old Azmat Ali presented in the accident and emergency department with
history of road traffic accident. He was driving the car when he hit a Pole. On
examination, pulse 100/min BP 110/70 mm of hg SPO2 95%. Chest examination
revealed marked diminished air entry on right middle and lower zone of Chest.
Resident surgeon noticed paradoxical movements of the chest-ray chest were taken
which shows that multiple ribs are broken bilaterally at multiple sites. Bilateral chest
intubation and endotracheal intubation was planned.
53
Learning objectives:
Demonstrate the morphological features of thoracic cage on skeleton.
Differentiate typical and atypical ribs and thoracic vertebrae.
Describe the framework of the thorax, including the sternum and its parts.
Identify potential causes of blunt chest trauma.
Identify complications of blunt chest trauma.
Learn the bilateral chest intubation and endotracheal intubation
Identify possible treatments and initial management for blunt chest trauma.
Learning Resources:
Clinical Anatomy by Snells
Clinically Oriented Anatomy by Keith. L. Moore
CBL Case-2
A middle aged female presented with multiple fractured ribs and right side
haemothorax after a road accident. A chest tube was put in to drain the hemothorax.
She was comfortable, no respiratory distress and maintaining the oxygen saturation
without oxygen supplementation. There is decrease air entry at base and check X-ray
revealed markedly elevated diaphragm on Rt. Side. C.T Chest-suspicion of traumatic
diaphragmatic hernia with herniation of liver in thorax. Surgeon planned lateral
thoracotomy through 7th I.C.space. Before opening he placed laparoscope through
chest tube site and confirmed the diagnosis. Liver and a part of colon were in thorax.
After opening both structures could be reduced easily. Rent in diaphragm repaired
with 1/0 Prolene suture. Post-operative – uneventful recovery.
Learning objectives:
Identify major anatomical landmarks of the diaphragm including its muscular portion,
central tendon, right and left crus, esophageal hiatus, aortic hiatus, and caval foramen.
Learning Resources:
Clinical Anatomy by Snells
Clinically Oriented Anatomy by Keith. L. Moore
CBL Case-3
A 10-year-old boy had a coughing fit while chewing on a pen top and subsequently
realized that the inside of the pen top was missing. He was sent home from the local
emergency department after a normal chest radiograph. Two days later he started to
wheeze and cough. A chest radiograph was again normal, but he had wheeze that
was louder on the right side of the chest and a fever. He was given intravenous
antibiotics but he did not improve and the following day was transferred to the regional
pediatric center for assessment. With rigid bronchoscopy under general anesthesia
the pen top was removed from his right main bronchus.
54
Learning objectives:
Identify the thoracic part of the trachea and bronchi describe its blood supply and
innervation.
Identify and describe the location of the lungs in the thoracic cavity.
Identify the relations of the pulmonary artery, pulmonary veins, and the bronchi at the
hilum of each lung.
Define a bronchopulmonary segment and discuss its general organization.
Name the bronchopulmonary segments and give their approximate location in
reference to the lobes of the lungs.
Learning Resources:
Clinical Anatomy by Snells
Clinically Oriented Anatomy by Keith. L. Moore
CBL Case-4
Consultative support to a patient was asked who had become unstable during his
postoperative phase of surgery. The patient was currently recovering from a modified
radical neck procedure for squamous cell carcinoma of the tongue. The patient
presented with tachycardia and hypotension with decreasing urinary output and poor
skin turgor. He was intermittently combative and semi-conscious. On physical exam,
surgeon noticed the neck was edematous, and a palpable mass roughly 8 cm in
diameter was felt. After connecting the bulb suction to the wall suction apparatus
approximately 600 ml of milky white fluid was immediately aspirated from the wound
with a subsequent diminution in the size of the mass. He was diagnosed a case of
chylothorax . The plan for management includes contacting the thoracic surgery team
and replacing the patient's lost fluid volume.
Learning objectives:
What is chylothorax? How would you explain the milky white fluid following this kind of
operation? Which lymphatic channel/duct would be involved?
Given the location of the surgical procedure - How would a definitive diagnosis be
made?
What is the course of the thoracic duct? What structures drain into the thoracic duct?
Define the boundaries of the posterior mediastinum, what lymph nodes can be found
in the posterior mediastinum?
Describe the major contents of the posterior mediastinum and their relationships
Learning Resources:
Clinical Anatomy by Snells
Clinically Oriented Anatomy by Keith. L. Moore
CBL Case-5
A previously healthy 50-year-old woman presented with a low-grade fever, a
generalized headache, and chest pain of 2 to 3 weeks’ duration. She described
intermittent sharp chest pain over the precordium that intensified when she lay down
55
and shortness of breath after minimal exertion. On physical examination, she
appeared weak and ill. Her temperature was 36.7°C (98.0°F), and her pulse was 110
beats per minute, regular, and had normal volume and character. Her blood pressure
was 115/70 mm Hg, which decreased to 90/70 mm Hg on inspiration; her respiratory
rate was 22 breaths per minute. Dullness to percussion, scattered inspiratory crackles,
and diminished air entry were evident over both lung bases. A CT scan of the chest
showed bilateral pleural effusions. An abdominal CT scan was normal. The patient
was admitted to the coronary care unit and underwent diagnostic pleural aspiration
and pericardiocentesis. The diagnostic procedure was a pericardial biopsy. The
patient had cardiac tamponade, caused by tuberculosis.
Learning objectives:
To learn the anatomy of the intercostal space and its contents.
To learn the anatomy of the pleura its reflections and pleural spaces.
To learn the anatomy of the pericardium its reflections and pericardial spaces.
For what other reasons (besides sampling pleural fluid) might a thoracocentesis be
performed? what is the procedure of pericardiocentesis and pericardial biopsy
Learning Resources:
Clinical Anatomy by Snells
Clinically Oriented Anatomy by Keith. L. Moore
CBL Case-6
Mr. Ahmed, a middle aged businessman after a heavy meal at a well-known
restaurant, walked briskly to join his fellows. He fell short of breath and developed
chest pain radiating to inner aspect of his left arm. The pain reduced on stopping.
He was taken to Casualty Department. On arrival, his pulse rate was 95/minute, blood
pressure was 80/50 mmHg and he had pallor on face and cold sweat. The heart
sounds were normal on auscultation. His chest X-ray (PA view) showed cardiomegaly.
He informed the doctor that he was taking medication for hypertension.
He was admitted to CCU and given supportive therapy. His Electrocardiogram showed
ST-elevation in all leads. Troponin-I (cardiac marker) was raised in blood. His coronary
angiography next morning showed narrowing of 3 coronary arteries
Learning objectives:
What are the possible causes of pain in this case? Why do you think this is cardiac
pain? Chest pain with radiation to the neck or arm is a ‘characteristic’ symptom of
acute myocardial infarction (AMI) in many patients; explain why the pain can be felt in
these distant regions.
Describe the blood supply to the heart, listing the major arteries and branches. What
arteries of the heart are most commonly occluded?
Why do occlusions rapidly lead to infarct in the heart? Which artery supplies the
papillary muscles?
What does the left anterior descending (LAD or anterior interventricular) coronary
artery supply?
56
What branches come off the LAD? What arteries of the heart are most commonly
occluded? Why do occlusions rapidly lead to infarct in the heart?
What is myocardial infarction? Which mechanisms cause an acute myocardial
infarction (AMI) considering changes in coronary artery?
What is coronary angiography ?
Learning Resources:
Clinical Anatomy by Snells
Clinically Oriented Anatomy by Keith. L. Moore
CBL 7
During a routine physical exam for participation in interscholastic sports, the physician
noted that Bilal, a twelve-year-old boy, had a long continuous heart murmur at the
second intercostal space near the left sternal border. A systolic thrill was also noted in
the same region. When questioned, the patient's mother recalled that Bilal had periods
of cyanosis and breathlessness as an infant, but that his previous pediatrician said
that the murmur and the symptoms were nothing to be concerned about. Bilal also
mentioned that he tires easily during physical activity. Chest films and Doppler
ultrasound were ordered. The radiographs indicated slight left ventricular hypertrophy,
and ultrasound revealed a patent ductus arteriosus. Bilal was scheduled for surgery
to ligate the ductus arteriosus. The surgery resulted in successful ligation of the ductus
arteriosus; however, Bilal experienced hoarseness when speaking following the
procedure. Laryngoscopy revealed paralysis of the left vocal fold.
Learning objectives:
What is the ductus arteriosus, and where is it located?
What is the prenatal function of the ductus arteriosus, and what usually happens to it
after birth?
What are the eventual consequences if the ductus arteriosus is not closed?
What likely caused paralysis of the left vocal fold?
Why would Doppler ultrasound be used to diagnose a patent ductus arteriosus?
Identify and trace all the branches of the arch of the aorta in the region and the
relationship of the vagus and phrenic nerves to them.
Identify the anatomy of the four chambers
Compare and contrast the anatomical characteristics right and left sides of the heart.
Learning Resources:
Clinical Anatomy by Snells
Clinically Oriented Anatomy by Keith. L. Moore
57
MODULE-II
Section-II
Physiology
58
Summary:
Code Y1M2
Name Physiology
Duration 10 weeks
Broad Themes of Module
(Theme: a subject that is being
integrated a majority of time of
module)
1.Thorax
2.Cardiovascular system
Subject Themes Cardiovascular Physiology
Prerequisite Module Y1M1
Mode of Information Transfer:
MIT
Lectures
Tutorials (PTT)
CBL
Practicals
Class tests
Physiology learning outcomes:
Physiologic
anatomy of heart
and cardiac action
potential
Appreciate the physiological arrangement of right and left
hearts along with the parallel arrangement of systemic
circulation.
Know the physiologic anatomy of cardiac muscles, its
functional syncytium and intercalated disc and difference
between cardiac, skeletal and smooth muscles.
Know the phases of action potential in cardiac muscle and
autorrhythmic cells/ conducting system of the heart along
with comparison of action potential in different tissues of
the heart.
Associate movement of ions across the cell membrane
with different phases of action potential.
Comprehend importance and relationship between
refectory period and mechanical periods.
Know the mechanism of generation and propagation of
cardiac impulse in conductive system of heart.
Appreciate characteristics of spread of cardiac impulse
through conductive system, atrial and ventricular
myocardium and its association with the function of heart.
59
Cardiac cycle To understand various cardiac events in relation to each
other
To understand and interpret cardiac cycle diagram
Comprehend preload and afterload, its influence on stroke
volume. The Frank-Starling’s mechanism and role of
autonomic regulation of heart rate and pumping action.
Know about the myocardial bioenergetics.
ECG Comprehend genesis of ECG, the way it is recorded and
its relationship with the electrical axis of heart.
Understand significance of waves, segments and intervals
of ECG recording.
Learn the concept of a vector and principles of the
measurement of ECG vector.
Appreciate relationship between vector and lead, type and
locations of leads and principles for vector analysis.
Know general principles of analysis of ECG.
Arrhythmias Understand the basis of common cardiac arrhythmias,
process that produce them and their clinical significance.
Evolve the concept of sinus arrhythmia and its clinical
significance.
Appreciate principal changes in ECG during myocardial
ischemia and infarction.
Comprehend changes in ECG and cardiac function during
common abnormalities in ionic composition of body fluids.
Understand the pathophysiology of ectopic focus and its
clinical significance.
Know how and when to carry out cardiac massage and its
significance.
Appreciate the events of cardiac cycle and prospective
changes in ECG, heart sounds, pressures and volumes
during different phases thereof.
Hemodynamics of
circulation
Know the organization of circulatory systems i.e. Greater
(Systemic) and Lesser (Pulmonary) circulations along with
accessory circulatory system (Lymphatic).
The physiologic anatomy of different types of blood
vessels and their importance.
To know the relationship between flow, resistance and
conductance.
Have the concept of blood flow, its types and significance
of turbulent and laminar flow, the concept of pressure
gradient, resistance to blood flow and its significance.
Understand the Physiology of vascular compliance?
Changes in compliance of blood vessels with age and
60
comparison between the compliance of arteries versus
veins.
Appreciate the origin of arterial pressure pulse and its
propagation to the peripheral arteries.
Know the factors damping the arterial pulse and
abnormalities of arterial pulse.
Know about the jugular venous pulse, its significance and
differentiation from arterial pulse.
Control of Local
Blood
To know about acute and chronic control of local blood
flow
To about theories of metabolic control of blood flow
To know about active and reactive hyperemia
To know the effects of blood flow control on total
peripheral resistance
Capillary
dynamics
Understand the principles of capillary dynamics, structure
of Interstitium, Starling’s forces for fluid exchange across
the capillary membrane and factors affecting thereof.
Ha ve
the concept of starling’s equilibrium, and how of the
interstitial space is kept dry?
Know the mechanism of formation of interstitial fluid, its
composition and factors creating starling’s disequilibrium
leading to the development of edema.
Appreciate Types of edema, its pathophysiology and
safety factors preventing edema formation.
Cardiac output Understand the determinants of cardiac output and factors
affecting cardiac output.
Appreciate the mechanics of low and high cardiac outputs
along with their effects on heart.
Comprehend the factors affecting stroke volume, heart
rate and total peripheral resistance.
Understand Fick’s principle for the measurement of
cardiac output.
Venous return Recognize the role of veins in blood flow, their functions
and factors regulating venous return and significance of
venous reservoirs.
Appreciate the equality of cardiac output and venous
return.
To understand factors affecting venous return
61
Arterial blood
pressure
Comprehend the determinants of arterial pressure, factors
affecting and mechanisms regulating blood pressure on
short and long term basis.
Understand mean arterial pressure and its significance.
Comprehend the individual and integrative role of baro
receptors, chemoreceptor, volume receptors, arterial
natriuretic factors and Renin-angiotensin – aldosterone
system in regulation of arterial pressure.
Understand the characteristics of regional circulations
(skeletal muscles, pulmonary, coronary & cerebral) and
factors regulating thereof.
Cardiac failure Define cardiac failure, its pathophysiology and clinical
manifestations
To know different types of cardiac failure
Physiology of treatment of cardiac failure
Heart sounds To know about origin of heart sounds
To know about murmurs
To know about clinical importance of various heat sounds
Circulatory shock Define shock, its types, stages of development and
differences between compensated and uncompensated
shock.
Understand the pathophysiology of compensated and
uncompensated shock.
Comprehend the short term and long term compensatory
mechanisms in circulatory shock.
Know the pathophysiology of irreversible shock.
Comprehend the general principles for the treatment of
shock.
Effect of exercise
on CVS
Know the types and severity of exercise in different sports.
Have the concept of general adaptive changes in muscles
in response to increased and decreased physical activity.
Know about the fuels available in body during rest and
exercise.
Comprehend cardiovascular and pulmonary changes
(including oxygen consumption) during different grades of
exercise.
62
List of Practicals:
Module 2
Examination of the chest related to CVS
Examination of arterial pulse.
ECG recording & interpretation.
Measurement of arterial B.P
Effect of exercise & posture on BP
Examination of the apex beat
Auscultation of normal heart sounds.
JVP / Tripple response
Any other practical relevant to that Module
List of Case Based Learning Scenerios:
PBL 1
A 55 years old male was brought to cardiac emergency department with the history of
severe left sided chest pain. His ECG showed ST segment elevation and significant
Q waves in leads I, aVL and V6. These findings suggested that he sustained acute
infarction of the left side of left ventricle. QRS complex was positive in lead aVF and
predominantly negative in lead I. The treating doctor showed ECG to final year medical
students and told that there was right axis deviation in the ECG as well.
Learning objectives
To know about basics of cardiac impulse generation and propagation
To understand ECG leads and normal ECG
To understand and interpret vector analysis
To know Physiological basis of ST segment shift (current of injury)
To understand ECG changes in acute myocardial infarction
To understand physiology of treatment of acute myocardial infarction
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 2
A 65 years old man suddenly woke up while sleeping during night due to severe
breathlessness. On arrival to emergency, his blood pressure was 105/70 mm Hg and
pulse rate 110 per minute. Auscultation of lungs revealed fine crepitations. Further
investigations revealed a low cardiac output of 4 l/min and right atrial pressure of 10
mm Hg. After few days he developed pitting oedema of legs and sacral region. The
patient was diagnosed as a case of heart failure.
Learning objectives:
To understand pathophysiology of heart failure
63
To know about types and stages of heart failure
To understand starling forces acting on capillary
To understand pathophysiology of pulmonary and systemic oedema
To understand role of kidney in heart failure
To understand physiology of treatment of heart failure
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 3
A 75 years old man comes into emergency department and faints. Five minutes later,
he is alert. An electrocardiogram was recorded immediately. It showed 75 P waves of
normal morphology per minute whereas QRS complexes were recorded at the rate of
35 per minute. Close observation of ECG revealed that QRS complexes were wide
with high voltage and there was no relation between P waves and the QRS complexes.
Learning objectives:
1. To know the normal anatomy and physiology of heart.
2. To know about the generation and conduction of cardiac impulse.
3. To understand the physiological basis of normal electrocardiogram.
4. To know about vectorial analysis
5. To know about sinus arrhythmias.
6. To learn the pathophysiology of heart blocks.
7. To know the physiological basis of escape beats/rhythm.
8. To understand about ectopic beats/rhythm.
9. To learn the mechanisms of tachyarrhythmias.
10. To know about paroxysmal tachyarrhythmias
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic mode
PBL 4
A 73 years old man comes to emergency department complaining of chest pain,
dyspnea on exertion and syncope. The patient has poorly managed
hypercholesterolemia and 10 years history of hypertension.
Vital signs
Temperature 37 degree C
Pulse 85/min
64
RR 18/min
BP 100/75mmHg
Physical examination
Palpation of carotid upstroke reveals a pulse that is both decreased and late, relative
to the apical impulse that is laterally displaced
A systolic murmur is present, loudest over the aorta, and peaking at mid-systole
Lungs are clear and there are no rales
Investigations
ECG: left axis deviation. No abnormalities in ST segment
Chest X-ray: Enlarged left ventricle and calcification of aortic valve
Doppler ultrasonography: A greatly increased velocity of flow during the systolic
portion of the cardiac cycle. The left atrium and left ventricular chambers are enlarged.
Left ventricular hypertrophy is present.
Cardiac enzymes: CK-MB, troponin-I and myoglobin levels are within normal ranges
Diagnosis: Aortic valve stenosis
Learning objectives:
To develop a working knowledge of:
1. Physiological anatomy of the heart
2. Cardiac cycle
3. Heart sounds and their relationship to events of cardiac cycle
4. Cardiac output & venous return
5. Concept of ventricular ejection and diastolic filling
6. Concept of pre-load and after-load
7. Cardiac work & pumping effectiveness of heart
8. Cardiomegaly and ventricular hypertrophy
9. Clinical examination of the cardiovascular system (CVS)
10. Types of murmurs
11. Pulmonary complications of cardiovascular disease
12. Differential diagnoses of dyspnea on exertion
13. Electrocardiogram (ECG)
14. Biochemical indicators of myocardial damage
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
65
PBL 5
A 68-year-old woman presents to the emergency center with shortness of breath, light-
headedness, and chest pain described as being like “an elephant sitting on her chest.”
She is diagnosed with a myocardial infarction. She is given oxygen and an aspirin to
chew and is not felt to be a candidate for thrombolytic therapy. Her heart rate is 40
beats per minute (bpm). Although there are P waves, they seem to be dissociated
from the QRS complexes on the electrocardiograph (ECG). The patient is diagnosed
with complete heart block, probably as a result of her myocardial infarction. The patient
is taken to the intensive care unit for stabilization, and plans are made for pacemaker
insertion.
Learning objectives:
To understand concept of circus movements.
To define current of injury and know the significance of J point.
To gain insight into concept of re-entrant signals in heart muscle.
To elaborate factors resulting in cardiac impulse delay at AV node.
To list factors responsible for cardiac conduction blocks.
To classify various types of heart blocks.
To develop detailed knowledge of various types of AV nodal blocks.
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 6
A 57-year-old man presents to the emergency center with complaints of chest pain
with radiation to the left arm and jaw. He reports feeling anxious, diaphoretic, and
shortness of breath. His past history is significant for type II diabetes mellitus and
hyperlipidemia. On examination, the patient appears to be in moderate distress and
anxious. His electrocardiograph (ECG) shows evidence of acute myocardial injury in
the inferior leads. The emergency room physician suspects that the left anterior
descending artery is involved.
Learning objectives:
To understand regulation of coronary circulation.
To develop an understanding of various neuronal receptors on coronary vasculature.
To gain insight into concepts of coronary steal syndrome and systolic stretch.
To identify ECG changes in myocardial infarction.
To apply concepts of vectorial analyses to abnormal ECG findings.
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
66
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 7
A 60 years old lady presented in medical OPD with complaints of bilateral swelling
lower limbs for the last about three months. She also gives history of epistaxis.
Physical examination revealed pitting oedema over the legs. Laboratory investigations
showed prolonged clotting time and decreased plasma proteins. Ultrasound abdomen
revealed cirrhosis of the liver.
Learning objectives:
To know the various causes of bilateral swelling of lower limbs.
To know the relation of decreased plasma proteins with swelling of legs.
What is the cause of epistaxis in this problem?
To know the causes of pitting edema.
To know about the causes of non-pitting edema.
To know about forces acting upon capillary membrane.
To know about Starling’s equilibrium.
To know about edema safety factors.
To know about lymphatic system.
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
67
PBL 8
A 55 years old man presented in medical OPD of Military Hospital with dyspoea, pallor
swelling of legs for the past one month. On physical examination, he had pitting edema
of legs and sacral region, and raised JVP. His chest radiograph showed marked
enlargement of heart while ECG revealed Q wave in leads 1, V3 and V4. Doppler
Echocardiography revealed ejection fraction of 30%. Physician diagnosed that the
patient was suffering from congestive cardiac failure due to past myocardial infarction.
Learning objectives:
To know pathophysiology of edema and its types.
To comprehend the mechanism of development of edema.
To know safety factors to prevent the development of edema.
To understand concept of preload, after load, ejection fraction and peripheral
resistance.
To know changes in ECG presenting in the old myocardial infarction.
To understand changes in cardiovascular system in response to myocardial infarction
that lead to changes in Starling’s forces and development of edema.
To learn the mechanism of development of cardiomegaly and cardiac dilatation and
changes leading to reduction in ejection fraction.
To understand pathophysiology of raised JVP in this patient.
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 9
A 58 years old business man with obesity, having BMI of 31, with sedentary lifestyle
and a known case of essential hypertension is on irregular treatment. He had previous
history of chest pain on/off which was relieved by taking rest and placing some tablet
under tongue. He was brought to emergency department with a history of severe,
crushing precordial chest pain, radiating to left arm for last one hour, associated with
history of profuse sweating and two episodes of vomiting. On examination he had
blood pressure of 145/80mmHg, pulse rate 62 beats/min regular, respiratory rate 28
breaths/min. ECG showed significant ST segment elevation. Serum cardiac enzymes
CPK and Trop-T were markedly raised.
On the basis of history, clinical examination and investigations, he was diagnosed as
a case of acute myocardial infarction. He was shifted to coronary care unit and
managed with thrombolytic therapy, high saturation oxygen inhalation, and opioid
analgesics. Few hours later he again developed chest pain and became unconscious,
repeat ECG was done and bizarre electrocardiogram was noted down without any
regular cardiac rhythm and diagnosis of ventricular fibrillation was made, immediate
CPR was started and electrical current applied to chest wall via AED (automatic
68
electrical defibrillator), but patient could not revive despite of all possible and timely
measures.
Learning objectives:
To be able to develop knowledge to answer following queries:
What is blood pressure?
What are the determinants of blood pressure?
What is mean arterial pressure and how will you calculate it?
What is essential hypertension? How will long term un-controlled hypertension affect
heart functioning?
Discuss the nervous regulation of blood pressure?
What is angina pectoris? Why taking rest relieved chest pain in this patient?
What is acute myocardial infarction? Discuss the pathophysiologic events leading to
myocardial infarction.
Besides ventricular fibrillation what could be the other possible causes of death in this
patient?
What is ventricular fibrillation?
Explain the causes of ventricular fibrillation?
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
69
MODULE-II
Section-III
Biochemistry
70
Summary:
Code Y1M2
Name Biochemistry
Duration 10 weeks
Broad Themes of Module
(Theme: a subject that is being
integrated a majority of time of
module)
1.Thorax
2.Cardiovascular system
Subject Themes
Chemistry of carbohydrates
Chemistry of Lipids
Enzymes
Body Fluids
Minerals & Trace Elements
Prerequisite Module Y1M1
Mode of Information Transfer:
MIT
Lectures
Tutorials (PTT)
CBL
Practicals
Class tests
Biochemistry learning outcomes:
Carbohydrate
Chemistry
Upon successful completion of this course, students will
be able to:
Define and classify carbohydrates with the understanding
of biochemical nature, significance of important member
of each group.
Explain structure of carbohydrates, isomerism and
properties of monosaccharide.
Enist different dietary sources and understand common
disorders related tochemistry of CHO.
Describe important homo and hetero Polysaccharides,
their important examples and biochemical role,
Understand the biomedical importance of carbohydrates
and their derivatives in health and disease conditions
Lipid Chemistry By the time the students finish the course, they will be able
to:
71
Define and classify lipids on different basis along with
appropriate examples.
Difference between oil, fat, waxes and vegetable ghee as
well as the process of hydrogenation and iodination,
saponification, acid number polansky,s number and other
physical attributes.
Describe saturated, unsaturated, poly unsaturated,
essential, non essential, Trans and cis type of fatty acids
and their significance in health and disease.
Distinguish structure of Glycero and sphingophospholids
as well as other different complex lipids and appreciate
their biochemical significance.
Describe Eicosanoids, their functions in health and
disease and the inhibitory action of NSAIDS and steroids
on them.
Recognize the sterol structure and different important
steroids especially the cholesterol, its functions and
significance with regards to IHD.
Summarize classification of lipoproteins, chemical
composition, functions and disorders
Understand the rancidity, its types and lipid per oxidation
and its clinical implications.
Enzymes At the end of the course, students are expected to be able
to:
Define different terms e.g, Coenzymes, co-factors,
holozymes, prosthetic group, ribozymes, zymogens
isozymes etc.
Classify enzymes and describe mechanism of enzyme
actions.
Explain different properties of enzymes and factors
affecting enzymes activity.
Illustrate enzyme kinetics in relation to Michaelis-Menten
Equation and Lineweaver- Burke plot.
Describe enzyme regulations, activation, inhibition and
biomedical importance of synthetic inhibitors.
Understand role of enzymes in clinical diagnosis and
therapeutics.
72
Body Fluids By the time the students finish the course, they will be able
to:
Define pH, buffers and briefly explain their mechanism of
action.
Explain Henderson- Hasselbalch Equation and develop
problem-solving skills based on this equation.
Describe Types of particles, solutions and colligative
properties
Understand the phenomenon of osmosis and osmotic
pressure and its implications regarding clinical situations.
Explain Surface tension, viscosity & their importance
related to body fluids.
Minerals and
Trace elements
By the end of the course, the students will be able to:
Classify minerals (macro minerals e.g Na, K, Ca, Cl, PO4
and micro minerals e.g Fe, Zn, Mg, Se, I, Cu, Cr, Cd, Mn).
Describe absorption/resorption and body regulation of
minerals, nutritional sources, RDAs, toxicity and deficiency
states of minerals.
Enlist the trace elements and briefly explain their
biochemical significance.
List of Practicals:
S. No CONTENTS
EXPERIMENT- 4. EXPERIMENTS ON CARBOHYDRATES /
BENEDICT'S TEST
EXPERIMENT-5. MOLISCH TEST
EXPERIMENT -6. IODINE TEST
EXPERIMENT-7. FEHLINGS TEST
EXPERIMENT-8. SELIWANOFF'S TEST
EXPERIMENT -15. EXPERIMENT ON LIPIDS (RANCIDITY OF FATS)
EXPERIMENT -16. MICROSCOPIC STUDY OF CHOLESTEROL
CRYSTALS
EXPERIMENT- 17. COLOUR TESTS FOR CHOLESTEROL
(SALKOWSKIS TEST)
EXPERIMENT -18. LIEBERMANN BURCHARD TEST
73
List of Case Based Learning Scenerios:
Topic: CHO chemistry (Anticoagulation)
A 62-year-old female presented to clinic with pain, swelling and redness to her right
lower leg. She stated that she was experiencing right calf pain worse with
walking. She noted that she returned home from a vacation to Europe last week which
included a 15-hour flight. The patient's vital signs were stable and she was
afebrile. The patient had a past medical history including hypertension and type 2
diabetes both of which were controlled with oral medications.
On examination, physician noticed that patient’s right leg to be slightly erythematous
and her calf is tender to touch. She had trace pedal edema in the affected leg and
limps slightly when walking. Her right calf was greater in size compared to her
left. Given this patient's medical history as well as her recent sedentary activity on her
long flight, physician suspected her to have DVT and ordered a venous ultrasound of
her right leg. Ultrasound results reveal a deep venous thrombus in her popliteal vein.
Based on this patient's ultrasound results, doctor prescribed her five days of
subcutaneous injectable heparin as well as coumarin. She was instructed her to return
to the clinic in five days to recheck her INR. She was issued strict instructions to return
should she develop chest pain or shortness of breath.
LEARNING OBJECTIVES:
1. Chemistry and functions of GAGs
2. Heparin and its role in body
3. Proteoglycans chemistry and functions
REFERENCE BOOKS:
1. Harper’s text book of Biochemistry.
2. Davidson’s Practice of Medicine.
3. Lippincott’s textbook of Biochemistry
Topic: Enzymes (Diagnosis of biliary obstruction)
A 40 years old female presented with jaundice and pain in epigastrium for three days.
She also complained of nausea, vomiting, itching on skin, anorexia, pale color stools
and dark color urine. On examination her skin and sclerae were yellow. There was no
history of fever or weight loss over last few months. Ultrasonography abdomen
showed gall stones and no mass in the bile duct was seen. Other lab investigations
are as under
LAB INVESTIGATIONS:
Test Name Result Normal Values
Serum bilirubin Total 40µmol/L 2-17 µmol/L
Conjugated 22 µmol/L 0-4 µmol/L
74
Unconjugated 18 µmol/L 0-13 µmol/L
Serum ALT 46 U/L Upto 40 U/L
AST 49 U/L Upto 40 U/L
ALP 620 U/L 132-365 U/L
GGT 130 U/L Upto 30 U/L
Enzymes are mostly intracellular species or they are secreted into specific
cavities e.g, digestive enzymes. Normal cellular turnover causes some release into
the plasma and that constitute the basis for normal levels of plasma enzymes. If a
certain enzyme in increased more than normal in plasma, it means cellular rupture in
the tissue in which this particular enzyme or its specific isoform was abundant.
Isoforms or isozymes of one enzyme mean a single change in primary structure of
protein which does not affect the activity or stability of enzyme much but give different
bands on electrophoresis. Increase in plasma ALT means hepatocellular damage
LEARNING OBJECTIVES:
1. Classification of enzymes
2. Factors affecting enzyme activity
3. Mechanism of enzyme action
Topic: Enzyme
A 65 years old chronic alcoholic reported to surgical OPD CMH Rwp with complains
of weight loss, anorexia & abdominal pain radiating to the back. Physical
examination showed a palpably enlarged gall bladder. Lab investigation showed:
Lab Investigation:
Computed tomogharapgy showed a mass in the head of pancreas. The patient was
diagnosed as a case of obstructive jaundice due to the pancreatic
adenocarcinoma.
Many diseases that cause tissue damage result in an increased release of
intracellular enzymes into the plasma. The level of specific enzyme activity in the
plasma frequently correlates with the extent of tissue damage. Alkaline phosphatase
Patient Value
Serum conjugated bilirubin
level
Increased
Urine bilirubin Present
Urine urobilinogen Absent
Fecal urobilinogen Absent
Serum ALP Highly Increased
Serum ALT Marginally Increased
Serum AST Marginally Increased
75
(ALP) is elevated in certain bone and liver diseases. ALP is useful for the diagnosis
of rickets, hyperparathyroidism, carcinoma of bone, and obstructive jaundice.
LEARNING OBJECTIVES:
Mechanism of action of enzymes
Factors affecting enzyme activity
Role of enzymes in clinical diagnosi
Topic: Body Fluids
A 45-year-old male previously known to have duodenal ulcer presents with complaints
of persistent vomiting for past 36 hrs. He has no history of abdominal pain. He
complains of being dizzy when he stands up.
On examination his pulse is 95 beats/min, blood pressure is 90/50mmHg with sunken
eyes and dry oral cavity.
LAB INVESTIGATIONS:
Test Name Result Normal Values
Plasma Na+ 130mEq/L 135 – 145mEq/L
pH 8 7.35 -7.45
Urea 50mg/dl 10-40mg/dl
Cl- 80mEq/L 90-106mEq/L
LEARNING OBJECTIVES:
1. Body fluid compartments.
2. Regulation of water balance
3. Weak acids and bases
4. Henderson Hassel Balch equation
CBL Session
A middle aged man was brought to emergency department with a history of persistent
vomiting and profuse watery diarrhea for the last 10 hours. Pt had a rapid feeble pulse,
sunken eyes and coated tongue. His blood pressure was 80/40 mm of Hg. He was
diagnosed as a case of acute gastroenteritis.
Related lab investigations:
Result Normal value
Serum Na + 130 meq/L 135-145 meq/L
“ K + 2.8 meq/L 3.5-5 meq/L
“ Urea 50 mg/dl upto 40 mg/dl
“ Creatinine 1.2 meq/L 0.6-1.2 mg/dl
“ Cl - 76 meq/L 96-106 meq/L
Learning Objectives:
Movement of materials across cell membranes
Simple diffusion
76
Carrier mediated diffusion and active transport
Osmosis and surface tension
Topic: Minerals (Copper Storage Disease, WD disease)
An 8-years boy was brought to PAEDS OPD in the hospital. He was presenting mild
cognitivedeterioration and clumsiness and common parkinsonian features.
Parents informed that the child had delayed slurred speech. It was also informed by
the parents that on opening arms child present wing-beating tremors. On details
family history parents informed that three years girls died two years earlier because of
same symptoms. Physician observed Kayser–Fleischer rings (KF rings) using slit
lamp and skin turgor&Spasticity was poor. Persistent elevatedlevels of serum
alanine aminotransferase (ALT), and aspartate aminotransferase (AST) levels were
observed. The attending pediatrician suspected Wilson Disease. Liver nodular
growths were observed in abdominal USG. To confirm diagnosis Liver FNAC was
performed which showed very high level of copper accumulation. High level of copper
was also observed in 24-hour urine exam. Furthermore, reduced Serum ceruloplasmin
levels was observed. In order to confirm the Wilson disease whole blood samples was
sent to molecular laboratory for genetic analysis in ATP7B gene.
S.No Tests Patients Refence
1 ALT 134U/L Upto 42 U/L
2. Urine Cu 65mmol/L >1mmol/l
3. Serum Cu 75mmol 11-24mmol/L
4. Serum ceruloplasmin 8 mg/L 15-20mg/L
5. USG abdomin Nodular liver Negative
Learning Objectives:
Copper metabolism in Human and its absorption
Functions of Copper
Dietary sources of Copper
Copper containing Enzymes
Topic: Iron Deficiency Anemia:
A multiparous female presented in medical OPD with the complaints of generalized
weakness, occasional dizziness, easy fatigability and shortness of breath. She
belonged to a low socio-economic status. Her past medical history reveals postpartum
hemorrhage.
On examination she was pale, her pulse was 90 beats/min, blood pressure was
100/70mmHg.
77
LAB INVESTIGATIONS:
Test Name Result Normal Values
Hb 8.5g/dl 12-14g/dl
MCV 70fl 80-100fl
MCH 20pg 27- 31pg
MCHC 28g/dl 32- 36g/dl
S.Fe 34µg/dl 50- 170µg/dl
TIBC 400µg/dl 250- 370µg/dl
S. Ferritin 10µg/L 15- 150µg/L
Peripheral Blood
Smear
Hypochromia
Microcytosis
LEARNING OBJECTIVES:
1. Classify minerals
2. Sources, Absorption and Transport of Iron
3 Disorders of iron metabolism
78
MODULE-III
Section-I
Anatomy
79
Summary:
Code Y1M3
Name Anatomy
Duration 10 weeks
Broad Themes of Module
(Theme: a subject that is being
integrated a majority of time of
module)
Lower Limb
Respiratory System
Subject Themes
Gross anatomy
Lower Limb
General Anatomy
Skin Fascia
Vertebral column
Nervous system-II
Embryology
Birth defects
Body cavities
Respiratory system
Muscular System
Skeletal system except head and neck
Development of limbs
Histology
Respiratory system
Prerequisite Module Y1M1 & Y1M2
Mode of Information Transfer:
MIT
Lectures
Dissection
Tutorials (PTT)
CBL
Practicals
Class tests
80
Anatomy learning outcomes:
ANATOMY
LEARNING OUTCOMES Y1M3
S.
N
O
TOPIC DISCI-
PLINE
MIT LEARNING OUTCOMES
1 Hip bone Gross
Anatomy
SG
D
Skill:
Demonstrate the anatomical position of bone and
determine the side
Recognize important bony land marks on gross
inspection as well as on radiographs
Identify the muscles & ligamentous attachments
on bone
Knowledge:
Describe the muscles & ligamentous attachments
on bone
Discuss injuries of hip bone and identify them on
radiographs
Compare gender differences of hip bone
2 Gluteal Region Gross
Anatomy
SG
D
Skill:
Explore and identify the structural anatomy of
gluteal region of the cadaver after performing
dissection.
Knowledge:
Describe in tabulated form the origin, insertion,
nerve supply and action of gluteal muscles
Enumerate structures deep to gluteus maximus
Describe boundaries of greater sciatic and lesser
sciatic foramina and enumerate structures
passing through them
Summarize the origin, relations and main
branches of nerves and vessels of gluteal region
Analyze clinical scenarios regarding:
Injury to superior gluteal nerve
Injury to inferior gluteal nerve
Injury to sciatic nerve
Intragluteal injections
3 Femur Gross
Anatomy
SG
D
Skill:
Demonstrate the anatomical position of bone and
determine the side
Recognize important bony land marks on gross
inspection as well as on radiographs
Knowledge:
81
Describe the muscle & ligamentous attachments
on bone
Describe femoral fractures and identify them on
radiographs
Analyze clinical scenarios related with coxa vera
and coxa valga
Analyze clinical scenarios related with interruption
of blood supply to head & neck of femur
4 Anterior fascial
Compartment of
Thigh
Gross
Anatomy
SG
D
Skill:
Dissect the front of thigh to:
Trace continuity of fascial layers of abdominal wall
with perineum & thigh
Explore the arrangement of superficial inguinal
lymph nodes & their drainage area
Locate the superficial inguinal ring
Reveal the course of great saphenous vein
Explore the fascia lata and opening contained in it
Identify the attachments of muscles of anterior
facial compartments of thigh along with their blood
and nerve supply
Explain the boundaries and contents of femoral
canal
identify the boundaries and contents of femoral
triangle
Knowledge:
Describe the boundaries, compartments, contents
and importance of femoral sheath
Describe in tabulated form the origin, insertion,
blood and nerve supply and actions of muscles of
anterior facial compartments of thigh
Analyze the clinical scenarios related with:
Varicose veins
Great saphenous vein cutdown
Great saphenous vein in coronary bypass surgery
Femoral vein catheterization
Femoral hernia
Femoral nerve injury
5 Medial fascial
Compartment of
Thigh
Gross
Anatomy
SG
D
Skill:
Explore and identify the structural anatomy of
medial compartment of thigh of the cadaver after
performing dissection.
Knowledge:
Describe the origin, insertion, nerve supply and
actions of muscles of medial facial compartments
of thigh
Analyze the clinical scenario related with obturator
nerve injury
82
6 The back of the
thigh
Gross
Anatomy
SG
D
Skill:
Explore and identify the structural anatomy of back
of thigh of the cadaver after performing dissection.
Knowledge:
Describe the origin, insertion, nerve supply and
actions of muscles of posterior facial
compartments of thigh
Mark the deep seated structures on the surface of
region
Analyze the clinical scenario related with sciatic
nerve injury with special reference to sciatica
7 Hip joint Gross
Anatomy
SG
D
Skill:
Demonstrate the articulation of hip joint
Knowledge:
Describe the articulation, type, capsule, ligaments,
synovial membrane, nerve supply, blood supply
and important relations of hip joint
Discuss the various movements of hip joint along
with muscles responsible for these movements
Discuss the importance of artery to the ligament of
the femoral head in Fractures of the Femoral Neck
Discuss the anatomical structures involved in
Dislocation of Hip Joint
Analyze the clinical scenarios related with hip joint
stability and trendelenburg’s sign
Discuss the anatomical basis of arthritis of hip joint 8 Bones of leg Gross
Anatomy
SG
D
Skill:
Identify the patella and its landmarks
Demonstrate the anatomical position of tibia &
fibula and determine their side
Recognize important bony land marks on gross
inspection as well as on radiographs
Knowledge:
Discuss patellar dislocations & patellar fractures
Describe and identify the muscle & ligamentous
attachments on tibia & fibula
Identify the common sites of fractures of tibia and
fibula and correlate them with their clinical
presentation based on the knowledge of Anatomy
Discuss clinical importance of intraosseous
infusion of tibia in infants
9 Popliteal fossa Gross
Anatomy
SG
D
Skill:
Explore and identify the structural anatomy of
popliteal fossa of the cadaver after performing
dissection.
Knowledge:
83
Enlist the structures forming various boundaries of
popliteal fossa
Enumerate the contents of popliteal fossa and
discuss their inter-relationships
Draw and label genicular anastomosis and
discuss its clinical significance
10 Fascial
compartments of
leg
Gross
Anatomy
SG
D
Skill:
Explore and identify the structural anatomy of
fascial compartments of leg of the cadaver after
performing dissection
Knowledge:
Enumerate the contents of anterior, lateral and
posterior compartments of leg.
Describe origin, insertion and actions of muscles
contained within anterior, lateral and posterior
compartment of leg.
Explain blood and nerve supply of anterior, lateral
and posterior compartment of leg
Discuss the following clinical conditions related
with structures in the region of leg:
Anterior compartment of leg syndrome
Tenosynovitis & dislocation of peroneus longus &
brevis tendons
Gastrocnemius & soleus muscle tears
Ruptured tendocalcaneus
Rupture of plantaris tendon
Plantaris tendon & autografts
Deep vein thrombosis & long distance air travel
Describe the retinaculae of ankle with reference to
their attachments and structures passing
underneath them
Analyze the clinical scenarios related with
common peroneal and tibial nerve injuries
84
11 Knee joint Gross
Anatomy
SG
D
Skill:
Demonstrate the articulation of knee joint
Knowledge:
Describe the articulation, type, capsule, ligaments
(extra and intra articular), synovial membrane,
nerve supply, blood supply, important relations,
and movements related to the knee joint
Explain the mechanism of locking and unlocking
of the knee joint
Name the bursae related to knee joint and point
out those which communicate with the joint cavity
Analyze the clinical scenarios related with patellar
tendon reflex and various types of bursitis
Discuss the following:
Quadriceps femoris as knee joint stabilizer
Strength of knee joint
Knee injury and synovial membrane
Ligamentous injury of knee joint
Meniscal injury of knee joint
Pneumoarthrography
Arthroscopy
12 Proximal & distal
Tibiofibular joints
Gross
Anatomy
SG
D
Knowledge:
Describe the articulation, type, capsule, ligaments,
nerve supply, blood supply, and movements
related to these joints
13 Ankle joint Gross
Anatomy
SG
D
Skill:
Demonstrate the articulation of ankle joint
Knowledge:
Describe the articulation, type, capsule, ligaments,
synovial membrane, nerve supply, blood supply,
movements and important relations of the joint
Differentiate between acute sprains of lateral
ankle and medial ankle
Describe the fracture dislocation of ankle joint
Discuss the sensory and motor loss associated
with tibial nerve entrapment in tarsal tunnel
syndrome
Analyze the clinical scenario related with achilles
tendon reflex
85
14 Articulated foot Gross
Anatomy
SG
D
Skill:
Identify the bones of foot
Demonstrate anatomical position and determine
their side of calcaneus and talus
Recognize important bony landmarks, muscular &
ligamentous attachments on calcaneus & talus
Knowledge:
Describe articulation among various bones of foot
Describe foot as a functional unit
Describe arches of foot with reference to bones of
arches, and mechanisms of arch support
Discuss mechanism of walking
Discuss the clinical problems associated with the
arches of foot 15 Intertarsal joints Gross
Anatomy
SG
D
Skill:
Identify articulation, type of joint, important
ligaments and movements at these joints on an
articulated foot 16 Sole of foot Gross
Anatomy
SG
D
Skill:
Explore and identify the structural anatomy of six
layers of sole of foot of the cadaver after
performing dissection
Knowledge:
Describe the attachments and relations of plantar
aponeurosis
Describe in tabulated form the origin, insertion,
nerve supply and action of muscles of sole of foot
Describe arteries and nerves of sole of foot
17 The dorsum of foot Gross
Anatomy
SG
D
Knowledge:
Describe the origin, insertion, nerve supply and
action of extensor digitorum brevis
Describe arteries and nerves of dorsum of foot
18 Cutaneous
innervations of
lower limb
Gross
Anatomy
SG
D
Knowledge:
Describe the cutaneous nerve supply of lower limb
Draw & label cutaneous innervation of lower limb
Draw & label the dermatomes of lower limb
86
19 Blood supply of
lower limb
Gross
Anatomy
SG
D
Knowledge:
Describe blood supply of lower limb
Discuss the following:
Arterial palpation
Collateral circulation
Traumatic injury to femoral artery
Arterial occlusive disease of the leg
Saphnous cut down
Varicose veins
20 Lymphatic drainage
of lower limb
Gross
Anatomy
SG
D
Knowledge:
Describe the lymphatic drainage of lower limb
21 Surface marking Gross
Anatomy
SG
D
Skill:
Mark the nerves and vessels of lower limb on the
surface of region with the help of important bony
landmarks HISTOLOGY
22 Respiratory system Histolog
y
IL Enlist the main divisions of respiratory passage
along with the structures constituting each?
Define respiratory and olfactory epithelium
Enumerate cells comprising respiratory & olfactory
epithelium. Describe their light microscopic
structure with the help of diagram
Describe the histological structure of the following
with the help of diagram:
Paranasal air sinuses
Nasopharynx
Larynx
Trachea
Lungs
Pleura
Differentiate various parts of bronchial tree on the
basis of lining epithelium, presence of cilia, glands,
cartilage, smooth muscles, and elastic fibers
Analyze clinical scenario regarding:
Immotile cilia syndrome
Respiratory distress syndrome EMBRYOLOGY
87
23 Birth defects Embryo IL Enumerate types of birth abnormalities & define
each of them with at least one example
Summarize principles of teratology
Classify teratogens with associated human
malformations in tabulated form
Enlist numerical & structural chromosomal
abnormalities
Discuss the following numerical chromosomal
abnormalities:
Trisomy 21
Trisomy 18
Trisomy 13
Klinefelter syndrome
Turner syndrome
Discuss the following structural chromosomal
abnormalities:
Cri-du-chat syndrome
Angelman’s syndrome
Prader-willi syndrome
Miler-dieker syndrome
Define mosaicism & discuss its embryological
basis
Discuss critical periods of prenatal human
development
Discuss invasive and noninvasive approaches for
assessing growth & development of fetus in utero
24 Development of
body cavities
Embryo IL Explain transformation of single intraembryonic
coelom into pericardial, pleural and peritoneal
cavities
Enlist development sources of diaphragm
Describe development of diaphragm
Discuss positional changes of diaphragm with
reference to age of fetus
Explain the innervation of diaphragm with
reference to its developmental sources
Analyze clinical scenarios regarding:
Ventral body wall defects
Diaphragmatic hernias
88
25 Development of
respiratory system
Embryo IL Describe the development of the following:
Larynx
Trachea
Bronchi
Lungs
Describe different stages of lung maturation
Enlist factors responsible for normal lung
maturation
Enlist the postnatal changes that occur in lungs
Analyze clinical scenarios regarding:
Various types of tracheoesophageal fistulas
Respiratory distress syndrome
Ectopic lung lobes
Congenital cysts of lungs
26 Development of
skeletal system
Embryo IL Describe histogenesis of cartilage
Describe histogenesis of bone
Explain development of joints
Describe development of vertebral column
Define spina bifida. Enlist its different types. Give
embryological basis of bifid spine alongwith
methods of prenatal assessment in this anomaly
Explain development of ribs and sternum with
congenital defects
Discuss embryological basis and associated birth
defects of:
Klippel feil syndrome
Accessory ribs
Fused ribs
Hemivertebra
Rachiscisis
Anomalies of sternum
89
27 Development of
muscular system
Embryo IL Describe development of skeletal musculature
Define lateral somitic frontier. Enlist the structures
whose borders are defined by lateral somitic
frontier.
Enumerate the muscles derived from primaxial
and abaxial domains
Summarize the innervation of axial skeletal
muscles
Enlist the developmental source of:
Head muscles
Limb muscles
Cardiac muscles
Smooth muscles
Discuss the following clinical anomalies:
Poland sequence
Prune belly syndrome
Muscular dystrophy
28 Development of
limbs
Embryo IL Describe the formation of limb buds
Define apical ectodermal ridge and discuss its role
in limb development including digits
Describe limb growth and development
Discuss rotation of limbs during development.
Describe the relationship between rotation of
limbs & cutaneous nerve supply of limbs
Differentiate between development of upper and
lower limbs
Discuss development of limb musculature
Enumerate and describe the various types of limb
defects. Discuss their embryological basis
General Anatomy
29 Skin & fascia General
Anatomy
SG
D
Enumerate the components of integumentary
system.
Enlist the functions of integumentary system
Enlist the two main parts of skin. Enumerate its
layers with their general features.
Enumerate appendages of skin. Describe their
general features.
Define cleavage lines? Describe their clinical
importance.
30 Vertebral column General
Anatomy
SG
D
Describe the anatomy of vertebral column with
reference to:
Number of vertebra in different regions
Curvatures of vertebral column
Describe defects in the curvature of vertebral
column
90
31 Nervous system-II General
Anatomy
SG
D
Describe division of nervous system on gross
anatomical basis
Enumerate components of central and peripheral
nervous system. Describe their general features
Define autonomic nervous system (ANS). Enlist
the differences between autonomic and somatic
nervous system
Enlist the main divisions of ANS? Describe
differences of its two main divisions in tabulated
form.
Enumerate cranial parasympathetic ganglia.
Describe their general features
Define enteric nervous system. Describe its
general features.
List of Practical work:
Histology of Bronchial Tree
Histology of Lung -I
Histology of Lung -II
Case Base Learning Scenarios:
CBL Case-1
A middle aged female presented with multiple fractured ribs and right side
haemothorax after a road accident. A chest tube was put in to drain the hemothorax.
She was comfortable, no respiratory distress and maintaining the oxygen saturation
without oxygen supplementation. There is decrease air entry at base and check X-ray
revealed markedly elevated diaphragm on Rt. Side. C.T.Chest-suspicion of traumatic
diaphragmatic hernia with herniation of liver in thorax. Surgeon planned lateral
thoracotomy through 7th I.C.space. Before opening he placed laparoscope through
chest tube site and confirmed the diagnosis. Liver and a part of colon were in thorax.
After opening both structures could be reduced easily. Rent in diaphragm repaired
with 1/0 Prolene suture. Post-operative – uneventful recovery.
Learning objectives:
Identify major anatomical landmarks of the diaphragm including its muscular portion,
central tendon, right and left crus, esophageal hiatus, aortic hiatus, and caval foramen.
Learning Resources:
Clinical Anatomy by Snells
Clinically Oriented Anatomy by Keith. L. Moore
91
CBL Case-2
A 10 years old boy had a coughing fit while chewing on a pen top and subsequently
realized that the inside of the pen top was missing. He was sent home from the local
emergency department after a normal chest radiograph. Two days later he started to
wheeze and cough. A chest radiograph was again normal, but he had wheeze that
was louder on the right side of the chest and a fever. He was given intravenous
antibiotics but he did not improve and the following day was transferred to the regional
pediatric center for assessment. With rigid bronchoscopy under general anesthesia
the pen top was removed from his right main bronchus.
Learning objectives:
Identify the thoracic part of the trachea and bronchi describe its blood supply and
innervation.
Identify and describe the location of the lungs in the thoracic cavity.
Identify the relations of the pulmonary artery, pulmonary veins, and the bronchi at the
hilum of each lung.
Define a bronchopulmonary segment and discuss its general organization.
Name the bronchopulmonary segments and give their approximate location in
reference to the lobes of the lungs.
Learning Resources:
Clinical Anatomy by Snells
Clinically Oriented Anatomy by Keith. L. Moore
LOWER LIMB:
CBL –3
A 55‐year‐old man presented to his local hospital in November 2001 with weakness
and pain in his left foot. Eighteen months previously, he noted his inability to curl the
toes of his left foot. This was associated with numbness of the sole of the same foot.
He was unable to stand on the toes of his left foot, and the numbness had spread to
the whole left sole and the back of the leg. He had developed severe pain in the back
of his left thigh, radiating down to the ankle, very similar to the sciatica he had
experienced 10 years previously on the right side. He was well systemically. On
examination, the neurological abnormalities were confined to his left leg. No wasting
was evident, but there was severe weakness in the muscle groups innervated by the
tibial nerve and numbness in the S1 dermatome. All deep tendon reflexes were intact
and the plantar responses flexor. General examination was unremarkable other than
a pigmented lesion on his back.
Blood tests, including full blood count and erythrocyte sedimentation rate, were
normal.
92
Nerve conduction studies showed an absent left posterior tibial motor response from
abductor hallucis, with a normal left common peroneal motor amplitude from extensor
digitorum brevis (4.2 mV at ankle). The left sural sensory action potential was 16 μV
initially, but fell to 6 μV in a month. Electromyography showed denervation changes in
the gastrocnemius and abductor hallucis, but not tibialis anterior, consistent with a
tibial or sciatic nerve lesion.
Magnetic resonance imaging (MRI) of the lumbosacral spine was normal, but MRI of
the thighs showed diffuse swelling and edema of the sciatic nerve from below the
buttock to the level of the popliteal fossa on the left. The extent of swelling was thought
to be unusual for a neurogenic tumor
Learning Objectives:
Describe the anatomy of the lateral femoral (hip) region, including the gluteal muscles,
their nerve supply, and their actions in locomotion.
Identify the sacral plexus, its general plan, and its major branches in the hip and
posterior thigh regions
Identify the sciatic nerve its root value and area of supply
Define the greater and lesser sciatic foramina and the structures traversing each.
Define the term sciatica and its causes
CBL 4
Tahir’s mother a 70 years old lady was brought to the emergency of Railway hospital
due to slipping in the bathroom. She was complaining of severe pain in the left hip
along with inability to put pressure on left leg during an effort to walk. On enquiry she
gave a history of generalized bone pains and chronic backache since menopause.
She also told the doctor that her intake of dairy products was low and she was taking
pain killer for the relief. Besides taking pain killer she has not seek the advice of any
doctor for her condition. On examination her left leg was shorter than right side and
was lying externally rotated. Movements of hip were painful but there was no external
wound. Doctor on duty in ER administered drugs for relief of pain and sent the patient
to Radiology department for x-rays. Her urine and blood were taken for routine
investigation in the laboratory.
X-ray
Showed fracture neck of femur on left side
Bone mineral Density was low in all the bones
X-ray spine also revealed biconcave vertebrae, with wedging of L2 vertebra
93
LABS
Hb = 9.9 g /dl TLC 8,900/cmm BSR 146mg/dl
Urea = 34 Creatinine 1.00
Serum Calcium 8 mg/dl
Serum Phosphorus 4.2 mg/dl
Alkaline Phosphatase 196 units
Serum Parathyroid Levels were normal
Urine R/E showed no abnormality
She was shifted to orthopedics ward for further management.
Learning objectives:
Describe the bony structure of the hip joint including bones and ligaments contributing
to its strength and flexibility
Define the Trendelenburg gait and Trendelenburg's sign
Describe the role of vitamin D, Parathormone and calcitonin in regulating the calcium
metabolism. Defineosteomalacia and osteoporosis and describe their main clinical
features. Discuss the role of Bisphosphonates in the treatment of osteoporosis.
CBL CASE NO 5
An 88-year-old man presented with a 2-day history of a painful mass in his right groin.
Abdominal examination disclosed mild tenderness in the right lower quadrant. A 6-cm
right inguinal mass was palpated that was non-reducible and exquisitely tender to
palpation. The leukocyte count was 13.4 х 109/L. The preoperative diagnosis was
strangulated inguinal hernia. At laparotomy, a large, edematous, inflamed femoral
mass, medial to the femoral vein, was identified. The anterior surface was opened,
and purulent fluid was drained. The hernial sac was found to contain a perforated
appendix. After appendectomy, the sac was closed at its base, and the redundant
portion was amputated. The femoral hernia was repaired by suturing the iliopubic tract
to Cooper's ligament. Pathological examination of the excised specimen
demonstrated acute and chronic appendicitis with perforation of the appendix and
periappendicitis in the hernial sac. Postoperatively, the patient was given a 4-day
course of antibiotics intravenously.
Learning objectives:
Given what you know about the anatomy of the inguinal region and the anteromedial
thigh.
Why would the femoral vein be used for catheterization instead of vessels closer to
the heart, like the external jugular, for instance?
Define the femoral triangle and adductor canal, their contents and the spatial
relationships of the structures passing through them.
Identify the femoral and obturator arteries and veins and their branches. Give their
areas of distribution.
CBL CASE 6
94
An eighteen-year-old girl, a case of post-polio residual paralysis, came to our
institution ambulating on all four limbs. She incidentally had a huge swelling arising
from her left knee. The swelling had started insidiously when she was ten years old
and gradually increased over the years to attain the present size. The mechanical
impediment with occasional pain and ulceration on its under surface had restricted her
ambulation even on her all four limbs for the previous two years. On examination, she
had a flail right lower limb with a fixed flexion deformity of 60° at right knee. Her left
lower limb had grade 4 muscle power at hip, grade 3 extensor power at knee and
equinovalgus deformity of left ankle and foot, apart from the massive swelling at the
knee. The swelling was single, oval in shape and present
Over the anterior aspect of the left knee centering over the patella and measuring
about 15x14 cm. The surface was predominantly smooth with some areas of
lobulations and the skin was free from swelling. There were scars of old pressure sores
on its under surface. It was non-tender on palpation, firm in consistency with some
cystic areas in between (Fig.1). Radiological examination revealed a soft tissue mass
with noevidence of calcification and not involving the knee joint. As a first stage
procedure, she underwent excision of the swelling in to after identifying the well-
defined cleavage between the swelling and the patella. The histopathological
examination report confirmed our preoperative diagnosis of bursal cyst. Confirmed our
preoperative diagnosis of bursal cyst. After 3 months, she underwent posterior soft
tissue release for correction of the fixed flexion deformity of
LEARNING OBJECTIVES:
Describe the synovial bursa and tendon sheaths
Enlist the bursae with relations around the knee joint
Describe the boundaries and contents of popliteal fossa
Identify the arterial anastomosis around the knee joint
CBL Case-7
A first year medical student enjoyed running for exercise and relief of tension. Near
the end of a particularly long and strenuous run, she suddenly developed a severe
pain on the bottom of her foot. She immediately stopped running and sat down to rest;
the pain subsided somewhat, but persisted. Although she rested from running for
several days, the pain did not go away and was particularly apparent if she stood for
long periods in the gross anatomy lab. Upon arrival at the hospital her injured foot was
swollen, deformed and held rigid. There was tenderness on the bottom of her foot from
heel to the heads of the metatarsals, especially just anterior to the calcaneal
tuberosity. AP, lateral and oblique x-rays were done, and an undisplaced fracture of
the talarneck was shown. Neurological tests revealed no nerve involvement other than
the pain, which appeared to be related entirely to the soft tissues on the bottom of her
foot. The orthopedic surgeon ordered a split plaster of Paris that should be reapplied
when swelling settles.
95
Learning objectives:
What soft tissue structures are located on the bottom of the foot between the calcaneal
tuberosity and the heads of the metatarsals? What single fibrous structure spans the
same bones? What is the function of the plantar aponeurosis, long
plantar, spring and short plantar ligaments?
How would the talus get fractured as a result of a fall on the heel? What other
bones may fracture from such trauma? What complication may arise from such a
fracture?
Discuss the anatomy of bones and arches of foot
Describe the anatomy of ankle joint and subtalar joints
96
MODULE-III
Section-II
Physiology
97
Summary:
Code Y1M3
Name Physiology
Duration 10 weeks
Broad Themes of Module
(Theme: a subject that is being
integrated a majority of time of
module)
Lower Limb
Respiratory System
Subject Themes
Physiology of respiration
Deep sea physiology
Aviation/space physiology
High altitude physiology
Exercise physiology
Prerequisite Module Y1M1&Y1M2
Mode of Information Transfer:
MIT
Lectures
Tutorials (PTT)
CBL
Practicals
Class tests
Physiology learning outcomes:
Introduction to
Respiratory System
To know the functional anatomy of respiratory tract
To understand the functions of various parts of
respiratory system
To highlight the non-respiratory functions of
respiratory tract
Pulmonary Mechanics
To know the functions of respiratory muscles
To understand various pressures acting on lungs and
chest wall
To understand the change in pressures during each
phase of respiration
To know the normal lung volumes/capacities
To understand the concept of static v/s dynamic lung
volumes/capacities
Pulmonary Compliance
To understand the concept of lung and chest wall
compliance
98
To know the composition & role of surfactant in
alveolar surface tension
To understand the concept of work of breathing
Respiratory Membrane
& Diffusion of Gases
To study the layers of respiratory membrane
To know the concept of diffusing capacity through
respiratory membrane
To study the factors affecting gas diffusion through
respiratory membrane
Diffusion of gases &
Oxygen transport
To know the mechanics of oxygen diffusion from
alveoli to blood
To understand the mechanism of oxygen transport in
the arterial blood
To know the mechanics of oxygen diffusion from
blood to tissue fluid
To study the mechanics of oxygen diffusion from
tissue fluid in to cell
Oxygen transport &
Dissociative curve
To study the role of Hb in oxygen transport
To study the normal oxygen-hemoglobin dissociation
curve
To study the factors that shift oxygen-hemoglobin
dissociation curve
Carbon dioxide
transport
To know the various chemical form in which CO2 is
transported in blood
To study the normal CO2 dissociation curve
To understand the concept of haldane effect
Nervous regulation of
respiration
To study different group of neurons composing
respiratory center
To study the control of inspiration and respiratory
rhythm
To understand the role of pneumotaxic center in
respiration
To understand the regulatory mechanism of hering-
breuer inflation reflex
Chemical regulation of
respiration
To study the central chemosensitive area & its
stimulation by CO2 and H+
To know the role of peripheral chemoreceptors for
control of respiration
To study the composite effects of PCO2, pH, & PO2
on alveolar ventilation
Pulmonary circulation
Va/Q
To understand pressure differences b/w pulmonary &
systemic circulation
To study the pulmonary blood flow and effect of
hydrostatic pressure on it
99
To understand the concept ventilation perfusion ratio
Hypoxia
To study various causes of hypoxia
To know the effects of hypoxia on the body
To study the role of oxygen therapy in different types
of hypoxia
Cyanosis/Asphyxia/
Hypercapnia
To study the causes of cyanosis and asphyxia
To study the hypercapnia & its association with
various forms of hypoxia
To study the effects of very high blood CO2 levels on
respiratory center
Hazards at High
Altitude
To study the change in composition of air at high
altitude
To study the effects of low oxygen pressure on the
body
To study the change of alveolar PO2 at different
elevations
Acclimatization at High
altitude
To study the mechanism of acclimatization of the
body to low O2
To understand the cause of natural acclimatization in
natives of H.A
To study the principals of acclimatization
Respiratory adjustment
during exercise
To study oxygen consumption and pulmonary
ventilation during exercise
To study the respiratory changes during exercise
To study body’s regulation of respiration during
exercise
AMS/HAPE/HACE
To study the causes & clinical features of
AMS/HAPE/HACE
To understand the pathophysiological mechanism of
development of AMS
To study the various treatment modalities for
AMS/HAPE/HACE
Aviation/space
physiology
100
List of Practical:
Module 3
Examination of the chest related to respiratory system (respiratory rate)
Auscultation of breath sounds
Spirometry: Lung volumes and opacities
Spirometry: FEV1 and FVC
Stethography.
PEFR Peak Expiratory Flow Rate
CPR
Any other practical relevant to that Module
List of Case Based Learning Scenerios:
PBL 1
A 10-year-old boy is brought to the emergency department because of difficulty in
breathing that developed while playing football. The boy has a history of allergies,
including a pollen allergy, but never previously showed this level of respiratory
difficulty. He now complains of tightness in the chest. There is no family history of
allergies or asthma. Both parents smoke cigarettes.
PHYSICAL EXAMINATION
Vital Signs: Temp 37°C, Pulse 120/min, Resp rate 30/min and shallow, BP 110/95 mm
Hg
Physical Examination: Patient is wheezing, anxious, and short of breath. The
wheezing is more prominent on exhalation, and there is an extended forced expiratory
phase. The chest antero-posterior diameter appears large for age and size. The nasal
mucosa is edematous, and the pharynx is coated with a clear postnasal discharge.
A beta2-adrenergic agent was administered by an inhaler, and the symptoms quickly
subsided. The patient’s anxiety was relieved, and heart rate and breathing rate
returned to normal. The patient was scheduled for pulmonary function tests.
LABORATORY STUDIES
Spirometry: Normal values. When challenged with methacholine, however, a
hyperreactivebroncho constriction occurred with decreased FEV1, decreased forced
vital capacity, and increased residual volume. Forced spirometry flow/volume loop:
Scooping, diminished peak flow.
DIAGNOSIS : Asthma
Learning objectives:
After discussion you should be able to:
List the passages through which air passes from the exterior to the alveoli, and
describe the cells that line each of them.
List the major muscles involved in respiration, and state the role of each.
Define the basic measures of lung volume and give approximate values for each in a
normal adult.
Define lung compliance and airway resistance.
101
Compare the pulmonary and systemic circulations, and list some major differences
between them.
Describe basic lung defense and metabolic functions.
Define partial pressure and calculate the partial pressure of each of the important
gases in the atmosphere at sea level.
Define hypoxia and describe differences in subtypes of hypoxia.
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 2
Mr. Ahmed, 25-years- old, young man of average built was enjoying good health. One
day he decided to do some exercise and went for jogging in exercise. After about a
round of one km, he felt severe palpitation and breathlessness. Becoming concerned,
he went to hospital. His pulse was 100/min, BP – 145/85 mmHg and respiratory rate
was 28/min. The doctor advised him spirometry at rest and as well as after exercise.
Following were the findings:
At Rest After Exercise
VT 500 ml VT 1000 ml
IRV 3000 ml IRV 4000 ml
ERV 1100 ml ERV 1500 ml
IC 34500 ml IC 50000 ml
VC 4600 ml VC 6500 ml
Doctor reassured Mr. Ahmed and sent him to his home.
Learning objectives:
To know the respiratory muscles involved at rest and in exercise.
To co-relate the changes in thoracic cage, muscle movement and compliance of lung
at rest and in exercise.
To understand the changes in pleural pressure, alveolar pressure and trans-
pulmonary pressure at rest and in exercise.
To comprehend the concept of spirometry.
To know the values of lung volume and capacities at rest and in exercise.
To appreciate the limitation in spirometry.
To understand the compliances of lung and factors effecting it.
To comprehend the concept of work of breathing and factors effecting it.
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
102
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 3
Ahmed returned to his apartment in the cold winter night. He turned on his old heater
and shut all the windows and door. After having a sleep of 2 hours, he woke up and
noticed that his vision became progressively blurred. When he got up he became
much disoriented and fell down. One of his friends incidentally stopped by and found
Ahmed unconscious and hyperventilating with a reddish complexion. He immediately
took him out of the house and called for an ambulance. The duty doctor made a
diagnosis of “CO poisoning” based upon history and examination. Ahmed was treated
with hyper baric oxygen therapy.
Learning objectives:
To develop working knowledge of:
Causes of CO poisoning
Relate the symptoms to Carbon monoxide poisoning.
Physiological basis of CO poisoning in this patient.
Dynamics of Oxygen transport by the blood.
Understanding of oxygen-Hb dissociation curve and effect of CO on this curve.
Forms of transport of respiratory gases in blood including O2, CO2, CO & Nitrogen.
Assessment of how CO caused a reduction in the oxygen-carrying capacity of the
blood.
Learning the physiological basis of treatment with hyper baric oxygen.
Compare the skin color of the patient in cyanosis, CO poisoning and
methemoglobinemia.
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 4
A 17-year-old student suspected of asthma has experienced reversible, periodic
attacks of chest tightness with coughing, wheezing, and hyperpnea. She states that
expiration is more difficult than inspiration. She is most comfortable sitting forward with
arms leaning on some support. X-rays revealed mild over inflation of the chest. Results
from laboratory and pulmonary function tests are as follows:
103
Frequency 20 breaths/min
Vital capacity (VC) 2.9 L
FEV1.0 1.4 L
FEV1.0/FVC 56%
Functional residual capacity (FRC) 3.89 L
Total lung capacity (TLC) 6.82 L
PaO2 70 mm Hg
PaCO2 26 mm Hg
Pulse 108 b/min
BP 120/76 mm Hg
Intermittent use of a bronchial smooth muscle dilator (1:1000 epinephrines by
nebulizer) for several days caused marked improvement, resulting in the following
laboratory and pulmonary function tests:
VC 4.15 L
FEV1.0 3.1 L
FEV1.0/FVC >75%
FRC 3.7 L
TLC 5.96L
PaO2 89 mm Hg
PaCO2 38 mm Hg
Pulse 129 b/min
BP 122/78 mm Hg
Learning objectives:
To understand mechanics of pulmonary ventilation underpinning various lung
pressures and volumes.
To acquire working knowledge of lung volumes and capacities.
To apply concept of ventilation perfusion ratio to physiological as well as pathological
clinical constructs.
To critically reflect on obstructive vs. restrictive pathophysiology of lung diseases.
To discuss pathogenesis, presentation and treatment of asthma.
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
104
Electronic modes
PBL 5
A 24-year-old pregnant woman presented to the hospital in preterm labor and
subsequently delivered a premature infant at only 27 weeks gestation (normal term
pregnancy is 37-42 weeks). After the delivery, the infant cried, but it subsequently
began to grunt and showed signs of hypoxia despite oxygen supplementation. The
baby immediately was intubated by endotracheal tube and given surfactant down the
endotracheal tube. The baby’s hypoxia resolved, and he was transferred to the
neonatal intensive care unit for further stabilization.
Learning objectives:
To know composition of pulmonary surfactant.
To understand concept of surface tension and its role in pulmonary ventilation.
To list changes in various pulmonary pressures at birth.
To understand pathophysiology of respiratory distress in infants.
To gain insight into treatment options for respiratory distress syndrome in infants.
To identify pathophysiological basis of retrolental fibroplasia.
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 6
A 55-year-old man with a history of a chronic lung disease presents to his primary care
physician with worsening shortness of breath. He was diagnosed about 1 year ago.
He gives a history of smoking cigarettes (one pack a day for 30 years) but has no other
medical problems. His general appearance is that of a thin male who appears to be in
mild distress. His cardiac examination is normal, but he is noted to have an expanded
anterior-posterior diameter of the chest with expiratory wheezes and breathing through
pursed lips. A chest x-ray reveals hyper inflated lung fields bilaterally and no infiltrates.
The patient’s physician recommends spirometry to differentiate emphysema, which is
an obstructive pulmonary disorder, from restrictive lung disease.
Learning objectives:
To understand pathophysiology of COPD.
To develop detailed knowledge of obstructive vs. restrictive lung disease.
To develop concept of FEV1/FVC ratio as a diagnostic tool for lung pathology.
To gain insight into treatment options for COPD.
Resources:
105
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 7
A 36-year-old woman presents to her primary care physician with complaints of
shortness of breath, arthritic pain, and multiple skin lesions. The patient is short of
breath on examination with a slightly low pulse oximetry reading, consistent with mild
hypoxemia. She has multiple skin lesions, and a biopsy reveals noncaseating
granulomas consistent with sarcoidosis. Chest x-ray findings revealing
hilaradenopathy are also suggestive of sarcoidosis. The physician explains to the
patient that he likely has a restrictive disease process, and recommends formal
pulmonary function testing.
Learning objectives:
To list various obstructive vs. restrictive lung disease processes.
To understand concept of ventilation perfusion matching.
To develop knowledge of physiological and pathological pulmonary circulation shunts.
To list components of respiratory membrane.
To elaborate factors influencing diffusion of gases across respiratory membrane.
Resources:
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
PBL 8
A patient presented in medical OPD with complaints of pain in joints, dizziness, vertigo,
visual abnormalities and confusion. After taking his history it was found out that the
patient was a diver and was exposed to rapid decompression (high rate of ascent)
above 18,000 ft. So based on his symptoms the physician suspected him as a case of
decompression sickness.
Learning objectives:
To understand the physiology of decompression.
Explain effects of high partial pressures of gases on body.
To know the effects of high partial pressures.
To know the effects of hypoxia.
To know the treatment of decompression.
Resources:
106
Guyton and Hall Textbook of Medical Physiology, 13th Edition by John E. Hall.
Human Physiology: From Cells to Systems, 8th Edition by Lauralee Sherwood.
Ganong's Review of Medical Physiology, 24th Edition (LANGE Basic Science) by Kim
E. Barrett, Susan M. Barman, Scott Boitano, Heddwen Brooks.
Electronic modes
107
MODULE-III
Section-III
Biochemistry
108
Summary:
Code Y1M3
Name Biochemistry
Duration 10 weeks
Broad Themes of Module
(Theme: a subject that is being
integrated a majority of time of
module)
Lower Limb
Respiratory System
Subject Themes
Nutrition
Water soluble vitamins
Fat Soluble vitamins
Prerequisite Module Y1M1&Y1M2
Mode of Information Transfer:
MIT
Lectures
Tutorials (PTT)
CBL
Practicals
Class tests
Biochemistry learning outcomes:
Nutrition At the end of this set students will be able to
Describe the concept of food, nutrition, Diet and Balanced
Diet.
Define different parameters regarding food and nutrition
like RDA, etc.
Concepts of BMR, Caloric requirements of the body,
Energy Balance.
Appreciate carbohydrates, fats and proteins as major food
source and their nutritional requirements.
Understand the nutritional quality of a protein, essential
amino acids their nutritional importance and nitrogen
balance.
Elaborate the sources of carbohydrates, their glycemic
index.
Recall the nutritional importance of fats and fatty acids,
essential fatty acids, saturated, unsaturated and poly
unsaturated fatty acids.
109
Understand and estimate caloric requirements of the
body.
Describe the concept of Balanced Diet.
Explain nutritional requirements in: - Pregnancy -
Lactation - New born and in nutritional disorders.
Explain Protein Energy Malnutrition.
Differentiate between Marasmus and Kwashiorkor.
Water soluble vitamins
After completion of this unit students will be able to
Classify water soluble vitamins.
Describe the chemistry of water soluble vitamins.
Explain the Biochemical Functions of water soluble
vitamins.
Differentiate the deficiency manifestations of water
soluble vitamins, Hypervitaminosis and its clinical fall outs
Enlist the daily allowances and sources of water soluble
vitamins.
Describe the hypervitaminosis of water soluble vitamins.
Fat Soluble vitamins
After completion of this unit students will be able to
Explain general features of fat soluble vitamins.
Explain the chemistry of fat soluble vitamins.
Describe the biochemical Functions of fat soluble
vitamins.
Explain the deficiency manifestations of fat soluble
vitamins.
Enlist the daily allowances and sources of fat soluble
vitamins.
Describe causes and manifestations of Hypervitaminosis
and toxicity.
List of Practicals:
EXPERIMENT -19. TESTS FOR URINE ABNORMALITIES-I
EXPERIMENT -20. TESTS FOR URINE ABNORMALITIES-II
EXPERIMENT -21. PREPARATION OF URINE REPORT BY ANALYZING
GIVEN SAMPLE OF URINE 73
At the end of the year the learner will be able to
Operate the centrifuge machine
Identify the presence of specific amino acids (aromatic amino acids, sulpher
containing amino acids)
Differentiate fibrous and globular proteins
110
Detect proteins in urine
Perform
Molisch’s test for general detection of Carbohydrate.
Iodine test for polysaccharides (starch &glycogen).
Benedict’s test for reducing carbohydrates.
Barfoed’s test to differentiate reducing mono and disaccharides.
Selivenoff’s test for detection of keto sugars.
Test on rancidity of fats.
Examination of cholesterol crystals.
Salkowski’s tes for presence of cholesterol.
Liebermann Burchard test for the determination of cholesterol in blood
List of Case Based Learning Scenerios:
Topic: Vitamin A Deficiency:
A 54-year-old male reported to medical OPD with a complaint of slow onset,
progressive difficulty in seeing the objects at night. The problem had increased over
the past six months. He had stopped driving because he could not see the road,
properly. All forms of artificial light seemed dim; however, daytime vision was normal.
He never had any other past ocular problems. There was no difficulty in distinguishing
colors.
Investigations:
Name of test Patient Value Reference
Range
vitamin A level 0.12 mg/L
0.30-1.20 mg/L
The patient was diagnosed as a case of Nyctalopia (night blindness) due to vitamin A
deficiency. He was started on oral vitamin A 10,000 international units (IU), twice a
day. After one month of treatment, the patient reported improvement in his vision.
Vitamin A is a fat soluble vitamin, necessary for a variety of functions such as vision,
proper growth and differentiation reproduction and maintenance of epithelial
cell. Night blindness (nyctalopia) is one of the earliest symptoms of vitamin A
deficiency. Vitamin A deficiency can occur as a result of malnutrition, malabsorption,
or poor vitamin metabolism due to liver disease.
Learning Objectives:
Sources & biochemical function of Vitamin A.
Wald's visual cycle
Deficiency of vitamin A
Hypervitaminosis A
111
References Books:
1 Harper’s Text book of Biochemistry
2 Lippincott’s text book of Biochemistry
Davidson’s Practice of Medicine
Internet and other reference sites
Topics: Folic Acid and Pregnancy
A 37 Years female, with 21st week of gestation, belonging to a rural area, reported in
obstetric OPD for a routine examination. She looked pale and malnourished.
On abdominal examination her fundal height was not in accordance to her LMP.
She was advised for anomaly scan and other base lines.
Investigations:
PARAMETERS PATEINT NORMAL REFERENCE
RANGES
Hb 9g/dl 12- 15g/dl
MCV 103fl 80-100fl
MCH 32pg 27-31pg
S.Folic acid 0.5ng/ml 2-20 ng/ml
Anomaly Scan Anencephalic fetus
On the basis of clinical history, examination and investigations she was
diagnosed as case of NTD (neural tube defect).
Learning Objectives:
Sources of folic acid
Absorption and metabolism of folic acid
Deficiency effects of vitamin B9
Reference Books:
Lippincott’s Biochemistry (Latest Edition)
Harper’s Textbook of Biochemistry
Davidson’s principles of Medicine
Internet & other related journals
112
Topic: Scurvy
A 9 Year child presented on family OPD, with complaints of spongy bleeding gums
with loose teeth. Her mother gives the H/O his delayed healing in wounds. She tells
that he has sometimes red dots on legs and bleed from the nose.
On investigation, X-Ray shows bone thinning; CBP shows low level of Hb, raised TLC.
RBCs show howell jolly bodies. He was diagnosed as scorbutic.
Learning Objects:
What is the differential diagnosis?
What is etiology
Give the biochemical basis if this.
Enlist the functions of the missing biomolecule
Cause diagnosis & management of scurvy.
Reference Books:
Lippincott’s Biochemistry (Latest Edition)
Harper’s Textbook of Biochemistry
Davidson’s principles of Medicine
Internet & other related journals
Topic: Bleeding disorder due to vit. K deficiency
A postpartum woman from a rural Baluchistan community gave birth to a baby girl with
the aid of a midwife at home. She brought the baby to the hospital because of
continued bleeding and oozing from the umbilical stump. It is likely that this bleeding
diathesis is secondary to a deficiency of vitamin K.
Lab Investigations:
Test Name Level Normal Values
Prothrombin Time
Prothrombin Time 16 Sec 13Sec
P.T.T.K
Patient 38 Sec 34Sec
Bleeding Time
Bleeding Time 09 Min 2-8 min
Coagulation Time
Coagulation Time 12 Min 6-11.5 min
Fibrin – D – Dimer
Result 260 ng /ml < 250 ng / ml
Plasma Fibrinogen
Plasma Fibrinogen 450 mg / dl 200 – 400 mg / dl
113
Learning Objectives:
1. Classification of Vitamin
2. Fat soluble vitamins
3. Vitamin K sources, function
4. Vitamin K deficiency
References Books:
Harper’s Text book of Biochemistry
Lippincott’s text book of Biochemistry
Davidson’s Practice of Medicine
Internet and other reference site
Topic: Vitamin B12 (Pernicious Anemia)
A 35 years old female presented to the physician with the complaints of severe
weakness, weight loss, loss of appetite, depression and memory loss. She had an
excision of a gastric ulcer 4 years ago. On examination, she has tingling and
numbness in hands and feet, pale yellow skin, red and thick, decreased positional and
vibrational sense. On advice of physician, following lab investigations were carried out
Lab Investigations:
Parameters Normal Value Patient value
Haemoglobin 12-14g/dl 8.9g/dl
RBC count 4-5.5X1012/L 3.0x1012 /L
MCV 76-96fL >100fL
Serum Vit B12 150-600pmol/L <70mg/dl
Urinary methymalonic
acid
Upto 0.5umol/L Raised
Schilling’s Test Normal Low
Vitamin B12 deficiency is more common in patients who fail to absorb the vitamin from
the intestine. A severe malabsorption of vitamin B12 leads to pernicious anemia. It is
an autoimmune disorder results in destruction of the gastric parietal cells that are
responsible for the synthesis of a glycoprotein called intrinsic factor. Vitamin B12
obtained from the diet binds to intrinsic factor in the intestine and subsequently
transported into the general circulation. Lack of intrinsic factor prevents the absorption
of vitamin B12, resulting in pernicious anemia. Patients with cobalamin deficiency are
usually anemic, but later on neuropsychiatric symptoms can be developed. Vitamin
B12 deficiency can cause weakened bones and may lead to hip fractures. An enlarged
liver is another symptom.
114
Learning Objectives:
Definition and classification of water soluble vitamins
Source, synthesis, absorption of Hematopoietic vitamins
Functions of Hematopoietic vitamins
Diseases and treatment of Hematopoietic vitamins
REFERENCE BOOKS:
1. Harper’s text book of Biochemistry.
2. Davidson’s Practice of Medicine.
3. Lippincott’s textbook of Biochemistry
At the end of the year the learner will be able to discuss the following topics with
detailed
understanding of biochemistry along with their clinical correlations:
Cell organelles
Nucleotides
Plasma proteins
Jaundice
Thalaesemisias
Kernictrus
Pernicious anemia
Scurvy
Ricketts
Osteoporosis
Vitamin K deficiency
Kawashiorker and merasmus
Enzymes and clinical diagnosis
Therapeutic use of enzymes
Lactose intolerance
115
First Professional MBBS Examination ANATOMY
Table of Specifications for Annual First Professional Examination:
Theory
Time Allowed =03 hrs (Including MCQs)
Marks of theory paper =90
Internal Assessment =10
Total marks =100
Pass Marks =50
25 x MCQs (on separate sheet) (25 Marks) Time =30 min
Q. No. 1,2,3,4,5,6,7,8,9
(7x SAQs/SEQs (C1 & C2) = 07 marks each
2 x SAQs/SEQs(C3) = 08 marks each) (65 Marks) Time = 2 hours
30 minutes
S. No
Topic
NUMBER OF MCQs (25)
(C1=10, C2=10, C3=5) 1 mark each
NUMBER OF SAQs/SEQs (09)
7x SAQs/SEQs (C1 & C2) = 07 marks each
2 x SAQs/SEQs(C3) = 08 marks each
1. Embryology 04 01
2 Histology 04 01
3 General Anatomy 03 01
4 Upper limb 05 02
5 Lower limb 05 02
6. Thorax 04 02
Total 25 (25 Marks) 09 (65 Marks)
116
Theory: Internal Assessment (IA) Calculation
A B C F
Roll No.
Name
All Modules/ Pre annual Exams or any other exam
Total Marks of internal assessment Out 0f 10
Total Marks Sum of Marks obtained x10/ sum of total marks in all exams
Table of Specifications for Annual Professional Exam: Practical
VIVA 50 marks
Practical 40 marks
Total
Non Observed OSPE Observed
station OSPE
Manual
Internal Examiner
External Examiner
Gross embryology, & X – rays
Histology 1. Long Slides 04 marks.
2. Surface marking
3. 02 marks.
25 Marks
25 Marks 20 Marks 10 Marks
07 Marks 03 marks
90 marks
Practical: Internal Assessment Calculation
A B C F
Roll No.
Name
OSPE /Practical Class tests throughout the year /Pre annual Practical Exams or any other exam
Total Marks of internal assessment Out 0f 10
Total Marks Sum of Marks obtained x10/ sum of total marks in all exams
117
First Professional MBBS Examination
PHYSIOLOGY
Table of Specifications for Annual First Professional Examination:
Theory
Time Allowed =03 hrs (Including MCQs)
Marks of theory paper =90
Internal assessment =10
Total marks =100
Pass Marks =50
25 x MCQs (on separate sheet) (25 Marks) Time =30 min
Q. No. 1,2,3,4,5,6,7,8,9
(7x SAQs/SEQs (C1 & C2) = 07 marks each
2 x SAQs/SEQs(C3) = 08 marks each) (65 Marks) Time = 2
hours 30 minutes
S No
Topic NUMBER OF MCQs (25)
(C1=10, C2=10, C3=5)
1 mark each
NUMBER OF SAQs/SEQs (09)
7x SAQs/SEQs (C1 & C2) = 07 marks each
2 x SAQs/SEQs (C3) = 08 marks
each
1 Cell, Nerve muscle
06 01
Whole Course 2 Blood 08 01
3 CVS 06 03
4 Respiration + Environmental + Sports
05 02
Total 25 07 02
Grand Total 25 (25 Marks) 09 (65 Marks)
118
Theory: Internal Assessment (IA) Calculation
A B C D
Roll No.
Name
All Modules/ Pre annual Exams or any other exam
Total Marks of internal assessment Out 0f 10
Total Marks Sum of Marks obtained x10/ sum of total marks in all exams
Table of Specifications for Annual Professional Exam: Practical
Viva (Theory) 50 marks
Practical 40 marks
Total
Internal Examiner
External Examiner
OSPE (20) Experimental Physiology + Table Viva
Practical Procedure
Practical Journal Observe
d Unobserved
25 25 10 10 12 5 3 90
Practical: Internal Assessment Calculation
A B C D
Roll No.
Name
OSPE /PTT/ Class tests throughout the year /Pre annual Exams or any other exam
Total Marks of internal assessment Out 0f 10
Total Marks Sum of Marks obtained x10/ sum of total marks in all exams
119
First Professional MBBS Examination
BIOCHEMISTRY
Table of Specifications for Annual First Professional Examination: Theory
Time Allowed =03 hrs (Including MCQs)
Marks of theory paper =90
Internal assessment =10
Total marks =100
Pass Marks =50
25 x MCQs (on separate sheet) (25 Marks) Time =30 min
Q. No. 1,2,3,4,5,6,7,8,9
(7x SAQs/SEQs (C1 & C2) = 07 marks each
2 x SAQs/SEQs (C3) = 08 marks each) (65 Marks) Time = 2 hours 30
minutes
Topic
NUMBER OF MCQs (25)
(C1=10 marks, C2=10 marks, C3=5
marks) 1 mark each
NUMBER OF SAQs/SEQs (09)
7x SAQs/SEQs (C1 & C2) = 07 marks each
2 x SAQs/SEQs (C3) = 08 marks
each
Chemistry of Protein & Amino Acids
03 01
Any 2 from whole courses
Enzymes 03 01
Vitamins 03 01
Porphyrins & Hemoglobin 03 01
Chemistry of CHO, Nutrition 04 01
Chemistry of lipids + Minerals and Trace elements
04 01
Nucleotides and Nucleic Acid, Biochemistry of cell & Body Fluids + Biological membrane
05
01
Total 25 (25 Marks) 09 (65 Marks)
120
Theory: Internal Assessment (IA) Calculation
A B C D
Roll No.
Name
All Modules/ Pre annual Exams or any other exam
Total Marks of internal assessment Out 0f 10
Total Marks Sum of Marks obtained x10/ sum of total marks in all
exams
Table of Specifications for Annual Professional Exam: Practical
Viva (Theory) 50 marks Practical
40 marks Total
Internal Examiner
External Examiner
OSPE (20) Viva + Performance
Journal
Observed (2 Station)
Unobserved (10 Station)
25 25 10 10 15 5 90
Practical: Internal Assessment Calculation
A B C D
Roll No.
Name
OSPE /PTT/ Class tests throughout the year /Pre annual Exams or any other exam
Total Marks of internal assessment Out 0f 10
Total Marks Sum of Marks obtained x10/ sum of total marks in all
exams