140712 antabif egbamm
DESCRIPTION
Presentation given at the Expert Group on Birds and Marine Mammals at the SCAR Open Science Conference.TRANSCRIPT
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ANTABIF:Antarctic Biodiversity Information Facility EGBAMM, 2012
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Our vision:Antarctic biodiversity data are open, linked, useful, interoperable and safe.
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What’s ANTABIF?
David B, Danis B, Griffiths HJSaturday 14 July 12
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What’s ANTABIF?
• Born as Census of Antarctic Marine Life as the data, visualization and analysis component
David B, Danis B, Griffiths HJSaturday 14 July 12
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What’s ANTABIF?
• Born as Census of Antarctic Marine Life as the data, visualization and analysis component
• Free and open access to biodiversity data: taxonomy and biogeography
David B, Danis B, Griffiths HJSaturday 14 July 12
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What’s ANTABIF?
• Born as Census of Antarctic Marine Life as the data, visualization and analysis component
• Free and open access to biodiversity data: taxonomy and biogeography
• SCAR-MarBIN => ANTABIF projects
David B, Danis B, Griffiths HJSaturday 14 July 12
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What’s ANTABIF?
• Born as Census of Antarctic Marine Life as the data, visualization and analysis component
• Free and open access to biodiversity data: taxonomy and biogeography
• SCAR-MarBIN => ANTABIF projects
• Science, conservation and management
David B, Danis B, Griffiths HJSaturday 14 July 12
![Page 8: 140712 antabif egbamm](https://reader034.vdocuments.us/reader034/viewer/2022052618/554ea1d1b4c905977e8b46a3/html5/thumbnails/8.jpg)
What’s ANTABIF?
• Born as Census of Antarctic Marine Life as the data, visualization and analysis component
• Free and open access to biodiversity data: taxonomy and biogeography
• SCAR-MarBIN => ANTABIF projects
• Science, conservation and management
• Networked community developments
David B, Danis B, Griffiths HJSaturday 14 July 12
![Page 9: 140712 antabif egbamm](https://reader034.vdocuments.us/reader034/viewer/2022052618/554ea1d1b4c905977e8b46a3/html5/thumbnails/9.jpg)
What’s ANTABIF?
• Born as Census of Antarctic Marine Life as the data, visualization and analysis component
• Free and open access to biodiversity data: taxonomy and biogeography
• SCAR-MarBIN => ANTABIF projects
• Science, conservation and management
• Networked community developments
• Scientific impact: Citations : 423, Publications: 58, H-Index: 11
David B, Danis B, Griffiths HJSaturday 14 July 12
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What’s ANTABIF?
• Born as Census of Antarctic Marine Life as the data, visualization and analysis component
• Free and open access to biodiversity data: taxonomy and biogeography
• SCAR-MarBIN => ANTABIF projects
• Science, conservation and management
• Networked community developments
• Scientific impact: Citations : 423, Publications: 58, H-Index: 11
David B, Danis B, Griffiths HJSaturday 14 July 12
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The first dynamic Register of Antarctic Marine Species
Taxonomic backbone
Board of 64 editors
Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of Life
Progress: Taxonomy17,098 taxa
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The first dynamic Register of Antarctic Marine Species
Taxonomic backbone
Board of 64 editors
Feeds World Register of Marine Species, Catalogue of Life and Encyclopedia of Life
Progress: Taxonomy17,098 taxa
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Progress: Biogeography
• Single access to 900 datasets
• 2.5 million records
• Data back to 1900 (Pygoscelis adeliae)
• Spatial data on over 5000 taxa
• Downloadable
• Interoperable
• Free and open
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Progress: Biogeography
• Single access to 900 datasets
• 2.5 million records
• Data back to 1900 (Pygoscelis adeliae)
• Spatial data on over 5000 taxa
• Downloadable
• Interoperable
• Free and open
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progress: ANTABIF Architecture
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• www.biodiversity.aq
progress: ANTABIF Architecture
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• www.biodiversity.aq• data.biodiversity.aq
progress: ANTABIF Architecture
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• www.biodiversity.aq• data.biodiversity.aq• ipt.biodiversity.aq
progress: ANTABIF Architecture
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• www.biodiversity.aq• data.biodiversity.aq• ipt.biodiversity.aq• afg.biodiversity.aq
progress: ANTABIF Architecture
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• www.biodiversity.aq• data.biodiversity.aq• ipt.biodiversity.aq• afg.biodiversity.aq• atlas.biodiversity.aq
progress: ANTABIF Architecture
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• www.biodiversity.aq• data.biodiversity.aq• ipt.biodiversity.aq• afg.biodiversity.aq• atlas.biodiversity.aq• mars.biodiversity.aq
progress: ANTABIF Architecture
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• www.biodiversity.aq• data.biodiversity.aq• ipt.biodiversity.aq• afg.biodiversity.aq• atlas.biodiversity.aq• mars.biodiversity.aq
progress: ANTABIF Architecture
Promote)the)communityEdriven)development)of)NPT)
• GBIF)promotes)training)and)use)of)NPT)
ANTABIF
MODULAR ARCHITECTURE
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• www.biodiversity.aq• data.biodiversity.aq• ipt.biodiversity.aq• afg.biodiversity.aq• atlas.biodiversity.aq• mars.biodiversity.aq
progress: ANTABIF ArchitectureNodes)Investment)in)new)func@onality)
• Nodes)extend)the)plaGorm)with)new)modules)
A)module)I)need)A)module)we)all)need)
Data discovery
Promote)the)communityEdriven)development)of)NPT)
• GBIF)promotes)training)and)use)of)NPT)
ANTABIF
MODULAR ARCHITECTURE
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• www.biodiversity.aq• data.biodiversity.aq• ipt.biodiversity.aq• afg.biodiversity.aq• atlas.biodiversity.aq• mars.biodiversity.aq
progress: ANTABIF ArchitectureNodes)Investment)in)new)func@onality)
• Nodes)extend)the)plaGorm)with)new)modules)
A)module)I)need)A)module)we)all)need)
Data discovery
Promote)the)communityEdriven)development)of)NPT)
• GBIF)promotes)training)and)use)of)NPT)
ANTABIF
MODULAR ARCHITECTURENodes)Investment)in)new)func@onality)
• Nodes)extend)the)plaGorm)with)new)modules)
A)module)I)need)A)module)we)all)need)
Data visualization
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• www.biodiversity.aq• data.biodiversity.aq• ipt.biodiversity.aq• afg.biodiversity.aq• atlas.biodiversity.aq• mars.biodiversity.aq
progress: ANTABIF ArchitectureNodes)Investment)in)new)func@onality)
• Nodes)extend)the)plaGorm)with)new)modules)
A)module)I)need)A)module)we)all)need)
Data discovery
Promote)the)communityEdriven)development)of)NPT)
• GBIF)promotes)training)and)use)of)NPT)
ANTABIF
MODULAR ARCHITECTURENodes)Investment)in)new)func@onality)
• Nodes)extend)the)plaGorm)with)new)modules)
A)module)I)need)A)module)we)all)need)
Data visualization
NPT)can)be)extended)by)crea@ng)and)installing)Modules)
Data products
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data.biodiversity.aq• data discovery interface• visualize occurrence data on map• view taxonomic data• download data• view metrics• send feedback• access technical documentation
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Data flow
Your data
standardize
DwC-A
upload publish
IPT ANTABIF
publish
Data Paper
(user’s point of view)
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ipt.biodiversity.aq• Integrated Publishing Toolkit
• standardize and clean your data• manage primary biodiversity data
• manage associated metadata• choose collaborators• generate and submit a Data Paper
• push data and metadata to Information Systems
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ipt.biodiversity.aq
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ipt. biodiversity.aq
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ipt. biodiversity.aq
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ipt. biodiversity.aq
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ipt. biodiversity.aq
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Data PaperMetadata document
Reward data publishing
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Proof of concept
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Proof of concept
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Proof of concept
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Proof of conceptAntarctic Star!sh (Echinodermata: asteroidea) from the ANDEEP3 expedition 73
Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition
Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2
1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium
Corresponding author: Bruno Danis ([email protected])
Academic editor: Vishwas Chavan | Received 13 March 2012 | Accepted 18 April 2012 | Published 23 April 2012
Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Star"sh (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078
Abstract#is dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. #e expedition focused on deep-sea stations in the Powell Basin and Weddell Sea.
Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. #e sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ).
#e dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens.
#e andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea star"sh. Before this study, most of the information available focused on star"sh from shallower depths than 1000m. #is dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er-emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)).
Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern star"sh, covering a very large sampling zone. #e dataset also brings to light six species, newly reported in the Southern Ocean.
#e quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys-tems, checking of identi"cation by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux-
ZooKeys 185: 73–78 (2012)
doi: 10.3897/zookeys.185.3078
www.zookeys.org
Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
DAtA PAPEr
Launched to accelerate biodiversity research
A peer-reviewed open-access journal
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Proof of conceptAntarctic Star!sh (Echinodermata: asteroidea) from the ANDEEP3 expedition 73
Antarctic Starfish (Echinodermata, Asteroidea) from the ANDEEP3 expedition
Bruno Danis1, Michel Jangoux2, Jennifer Wilmes2
1 ANTABIF, 29, rue Vautier, 1000, Brussels, Belgium 2 Université Libre de Bruxelles, 50, av FD Roosevelt, 1050, Brussels, Belgium
Corresponding author: Bruno Danis ([email protected])
Academic editor: Vishwas Chavan | Received 13 March 2012 | Accepted 18 April 2012 | Published 23 April 2012
Citation: Danis B, Jangoux M, Wilmes J (2012) Antarctic Star"sh (Echinodermata: asteroidea) from the ANDEEP3 expedition. ZooKeys 185: 73–78. doi: 10.3897/zookeys.185.3078
Abstract#is dataset includes information on sea stars collected during the ANDEEP3 expedition, which took place in 2005. #e expedition focused on deep-sea stations in the Powell Basin and Weddell Sea.
Sea stars were collected using an Agassiz trawl (3m, mesh-size 500µm), deployed in 16 stations during the ANTXXII/3 (ANDEEP3, PS72) expedition of the RV Polarstern. Sampling depth ranged from 1047 to 4931m. Trawling distance ranged from 731 to 3841m. #e sampling area ranges from -41°S to -71°S (latitude) and from 0 to -65°W (longitude). A complete list of stations is available from the PANGAEA data system (http://www.pangaea.de/PHP/CruiseReports.php?b=Polarstern), including a cruise report (http://epic-reports.awi.de/3694/1/PE_72.pdf ).
#e dataset includes 50 records, with individual counts ranging from 1-10, reaching a total of 132 specimens.
#e andeep3-Asteroidea is a unique dataset as it covers an under-explored region of the Southern Ocean, and that very little information was available regarding Antarctic deep-sea star"sh. Before this study, most of the information available focused on star"sh from shallower depths than 1000m. #is dataset allowed to make unique observations, such as the fact that some species were only present at very high depths (Hymenaster crucifer, Hymenaster pellucidus, Hymenaster praecoquis, Psilaster charcoti, Freyella attenuata, Freyastera tuberculata, Styrachaster chuni and Vemaster sudatlanticus were all found below -3770m), while others displayed remarkable eurybathy, with very high depths amplitudes (Bathybiaster loripes (4842m), Lysasterias adeliae (4832m), Lophaster stellans (4752m), Cheiraster planeta (4708m), Er-emicaster crassus (4626m), Lophaster gaini (4560m) and Ctenodiscus australis (4489m)).
Even if the number of records is relatively small, the data bring many new insights on the taxonomic, bathymetric and geographic distributions of Southern star"sh, covering a very large sampling zone. #e dataset also brings to light six species, newly reported in the Southern Ocean.
#e quality of the data was controlled very thoroughly, by means of on-board Polarstern GPS sys-tems, checking of identi"cation by a renowned specialist (Prof. Michel Jangoux, Université Libre de Brux-
ZooKeys 185: 73–78 (2012)
doi: 10.3897/zookeys.185.3078
www.zookeys.org
Copyright Bruno Danis et al. This is an open access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC-BY), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
DAtA PAPEr
Launched to accelerate biodiversity research
A peer-reviewed open-access journal
Impa
ct F
acto
r: 0.
514
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afg. biodiversity.aq
• Identification aid• High quality (useful) pictures• Expert Descriptions• Built on-the-fly from various sources• Generates a pdf for taxa/area of interest
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afg. biodiversity.aq
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afg. biodiversity.aq
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afg. biodiversity.aq
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atlas.biodiversity.aq
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• Biogeographic Atlas of the Southern Ocean
atlas.biodiversity.aq
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• Biogeographic Atlas of the Southern Ocean
• Redo of Hedgepeth 1969 Folio
atlas.biodiversity.aq
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• Biogeographic Atlas of the Southern Ocean
• Redo of Hedgepeth 1969 Folio
• Predictive approach
atlas.biodiversity.aq
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• Biogeographic Atlas of the Southern Ocean
• Redo of Hedgepeth 1969 Folio
• Predictive approach
• Static and dynamic versions
atlas.biodiversity.aq
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• Biogeographic Atlas of the Southern Ocean
• Redo of Hedgepeth 1969 Folio
• Predictive approach
• Static and dynamic versions
• Modelization loops are ready
atlas.biodiversity.aq
Saturday 14 July 12
![Page 58: 140712 antabif egbamm](https://reader034.vdocuments.us/reader034/viewer/2022052618/554ea1d1b4c905977e8b46a3/html5/thumbnails/58.jpg)
94 Interpolated data layersSlopeBathymetryChlorophyllDistance to the continentDistance to bird coloniesDistance to iceDistance to shelfDistance to canyonFloor temperature...+ ANTABIF Occurrence records
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94 Interpolated data layersSlopeBathymetryChlorophyllDistance to the continentDistance to bird coloniesDistance to iceDistance to shelfDistance to canyonFloor temperature...+ ANTABIF Occurrence records
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94 Interpolated data layersSlopeBathymetryChlorophyllDistance to the continentDistance to bird coloniesDistance to iceDistance to shelfDistance to canyonFloor temperature...+ ANTABIF Occurrence records
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R-functions GUI for BRT and GDM
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R-functions GUI for BRT and GDM
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atlas.biodiversity.aq
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• Outcomes of the Villefranche workshop
atlas.biodiversity.aq
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• Outcomes of the Villefranche workshop
• BRT models on 13 spp of penguins and 15 spp of seals (sub-ant and ant)
atlas.biodiversity.aq
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• Outcomes of the Villefranche workshop
• BRT models on 13 spp of penguins and 15 spp of seals (sub-ant and ant)
• Some models are doing ok, but needs refinement
atlas.biodiversity.aq
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Arctocephalus gazella
−90
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lat
Arctocephalus.gazellaFALSETRUE
0.2
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Arctocephalus.gazella − BRT
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Hydrurga leptonyx
−90
−80
−70
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−100 0 100lon
lat
0.2
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Hydrurga.leptonyxFALSETRUE
Hydrurga.leptonyx − BRT
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Aptenodytes forsteri
−90
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−100 0 100lon
lat
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Aptenodytes.forsteriFALSETRUE
Aptenodytes.forsteri − BRT
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Pygoscelis adeliae
−90
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−100 0 100lon
lat
0.2
0.4
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Pygoscelis.adeliaeFALSETRUE
Pygoscelis.adeliae − BRT
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In the pipeline
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atlas.biodiversity.aq
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• Next steps
atlas.biodiversity.aq
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• Next steps
• Consolidate manuscripts
atlas.biodiversity.aq
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• Next steps
• Consolidate manuscripts
• Refine/select models and outputs
atlas.biodiversity.aq
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• Next steps
• Consolidate manuscripts
• Refine/select models and outputs
• Generate final versions of maps
atlas.biodiversity.aq
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• Next steps
• Consolidate manuscripts
• Refine/select models and outputs
• Generate final versions of maps
atlas.biodiversity.aq
Saturday 14 July 12
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• Next steps
• Consolidate manuscripts
• Refine/select models and outputs
• Generate final versions of maps
• Dynamic version(s)
atlas.biodiversity.aq
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@biodiversityaq
image © NY Times
Thanks and questions?
Saturday 14 July 12