1 running title: apocarotenoid glycosides in arabidopsis 2 · 29 phytoene synthase, arabidopsis,...

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1 Running Title: Apocarotenoid Glycosides in Arabidopsis 1 2 3 Corresponding author: 4 Ralf Welsch 5 University of Freiburg 6 Faculty of Biology II 7 D79104 Freiburg, Germany 8 Tel: +49-761-203-8454 9 E-mail: [email protected] 10 11 12 13 14 15 16 Research Area: Biochemistry and Metabolism 17 18 Plant Physiology Preview. Published on July 1, 2015, as DOI:10.1104/pp.15.00243 Copyright 2015 by the American Society of Plant Biologists www.plantphysiol.org on May 29, 2020 - Published by Downloaded from Copyright © 2015 American Society of Plant Biologists. All rights reserved.

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Page 1: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

1

Running Title Apocarotenoid Glycosides in Arabidopsis 1

2

3

Corresponding author 4

Ralf Welsch 5

University of Freiburg 6

Faculty of Biology II 7

D79104 Freiburg Germany 8

Tel +49-761-203-8454 9

E-mail ralfwelschbiologieuni-freiburgde 10

11

12

13

14

15

16

Research Area Biochemistry and Metabolism 17

18

Plant Physiology Preview Published on July 1 2015 as DOI101104pp1500243

Copyright 2015 by the American Society of Plant Biologists

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2

Tissue-specific Apocarotenoid Glycosylation Contributes to Carotenoid Homeostasis in 19

Arabidopsis Leaves 20

Kira Laumltari1 Florian Wuumlst1 Michaela Huumlbner1 Patrick Schaub1 Kim Gabriele Beisel2 Shizue 21

Matsubara2 Peter Beyer1 Ralf Welsch1 22

23

1University of Freiburg Faculty of Biology II D79104 Freiburg Germany 24 2IBG-2 Pflanzenwissenschaften Forschungszentrum Juumllich D52425 Juumllich Germany 25

26

27

Key words 28

phytoene synthase Arabidopsis apocarotenoids apocarotenoid glycosides norisoprenoids 29

carotene hydroxylase carotenoid cleavage dioxygenase 30

31

SUMMARY 32

Arabidopsis leaves form apocarotenoid glycosides derived from a CAROTENOID 33

CLEAVAGE DIOXYGENASE 4 mediated cleavage of xanthophylls which contribute to 34

biosynthetic pathway flux compensation 35

36

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3

FOOTNOTES 37

38

Financial source 39

40

This work was supported by the HarvestPlus research consortium and a DFG Research Grant 41

to RW (WE47312-1) 42

43

44

Corresponding author 45

Ralf Welsch 46

ralfwelschbiologieuni-freiburgde 47

48

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4

ABSTRACT 49

Attaining defined steady-state carotenoid levels requires balancing of the rates governing their 50

synthesis and metabolism Phytoene formation mediated by phytoene synthase (PSY) is rate-51

limiting in the biosynthesis of carotenoids while carotenoid catabolism involves a multitude 52

of non-enzymatic and enzymatic processes We investigated carotenoid and apocarotenoid 53

formation in Arabidopsis in response to enhanced pathway flux upon PSY overexpression 54

This resulted in a dramatic accumulation of mainly β-carotene in roots and non-green calli 55

while carotenoids remained unchanged in leaves We show that in chloroplasts surplus PSY 56

was partially soluble localized in the stroma and therefore inactive while the membrane-57

bound portion mediated a doubling of phytoene synthesis rates Increased pathway flux was 58

not compensated by enhanced generation of long-chain apocarotenals but resulted in higher 59

levels of C13-apocarotenoid glycosides (AGs) Using mutant lines deficient in carotenoid 60

cleavage dioxygenases (CCD) we identified CCD4 as being mainly responsible for the 61

majority of AGs formed Moreover changed AG patterns in the carotene hydroxylase mutants 62

lut1 and lut5 exhibiting altered leaf carotenoids allowed to define specific xanthophyll species 63

as precursors for the apocarotenoid aglycons detected In contrast to leaves carotenoid 64

hyperaccumulating roots contained higher levels of β-carotene derived apocarotenals while 65

AGs were absent These contrasting responses are associated with tissue-specific capacities to 66

synthesize xanthophylls which thus determine the modes of carotenoid accumulation and 67

apocarotenoid formation 68

69

70

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5

INTRODUCTION 71

In plants the synthesis of carotenoids is plastid-localized with the plastid type determining 72

their function (Ruiz-Sola and Rodriacuteguez-Concepcioacuten 2011 Nisar et al 2015) In non-73

photosynthetic chromoplasts carotenoids and their volatile derivatives attract pollinating 74

insects or zoochoric animals Here carotenoids are sequestered in diverse sub-organellar 75

structures which can be tubulous globulous membranous or crystalline (Sitte et al 1980 76

Egea et al 2010) In chloroplasts carotenoids are present in light-harvesting complex 77

proteins and in photosynthetic reaction centres They extend the light spectrum used for 78

photosynthetic energy transformation and act photoprotectively due to their ability to quench 79

excitation energy from singlet or triplet state chlorophylls thereby decreasing the risk that 80

singlet oxygen forms (Demmig-Adams and Adams 2002 Niyogi 1999) Furthermore the 81

regulated epoxidation and de-epoxidation of zeaxanthin in the xanthophyll cycle contributes 82

to the non-photochemical quenching of energy (Niyogi 1999 Ballottari et al 2014) In 83

contrast to these processes which maintain carotenoid integrity carotenoids are also capable 84

to chemically quench singlet oxygen by their own oxidation which is accompanied by the 85

release of various carotenoid degradation products (Ramel et al 2012a Ramel et al 2012c) 86

The various functions of carotenoids require their dynamic qualitative and quantitative tuning 87

in response to environmental conditions to attain and maintain adequate steady-state 88

concentrations This includes both the regulation of their synthesis as well as the formation 89

release or disposal of their breakdown products The synthesis of carotenoids is initiated by 90

the condensation of two molecules geranylgeranyl diphosphate to form phytoene catalyzed 91

by the enzyme phytoene synthase (PSY) which is considered as the rate-limiting enzyme 92

(von Lintig et al 1997 Li et al 2008 Rodriacuteguez-Villaloacuten et al 2009 Welsch et al 2010 93

Zhou et al 2015) In plants two desaturases phytoene desaturase and ζ-carotene desaturase 94

and two carotene cis-trans-isomerases convert the colorless phytoene into the red-colored all-95

trans-lycopene (Isaacson et al 2002 Park et al 2002 Chen et al 2010 Yu et al 2011) 96

Two lycopene cyclases introduce either β- or ε-ionone rings yielding in α-(εβ-)-carotene and 97

β-(ββ)-carotene In Arabidopsis four enzymes hydroxylate carotenes with partially 98

overlapping substrate specificity (Kim et al 2009) Two non-heme iron-dependent 99

hydroxylases (BCH1 and BCH2) convert β-carotene into zeaxanthin The second set of 100

hydrolxyases CYP97A3 and CYP97C1 prefer α-carotene belong to the cytochrome P450 101

enzyme family and produce zeinoxanthin and lutein respectively Absence of each 102

cytochrome P450 hydroxylase constitutes a distinct phenotype - named lut5 for CYP97A3 103

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6

and lut1 for CYP97C1 deficiency - characterized by altered pigment compositions and the 104

accumulation of monohydroxylated intermediates while deficiency in BCH1 and BCH2 does 105

not affect the pigment composition 106

In green tissues photooxidative destruction seemingly predominates and consumes 107

carotenoids (Simkin et al 2003) Moreover 14CO2 pulse-chase experiments with Arabidopsis 108

leaves identified α- and β-carotene as the main targets for photooxidation while xanthophylls 109

were less affected (Beisel et al 2010) Oxidation assays with β-carotene showed epoxy- and 110

peroxy-derivatives as the main primary products which however undergo further reactions 111

yielding more stable degradation products which are in part the same apocarotenalsones as 112

those being produced enzymatically (Ramel et al 2012a Ramel et al 2012c) 113

In Arabidopsis genes coding for carotenoid cleaving enzymes (carotenoid cleavage 114

dioxygenases CCDs) form a small gene family comprising nine members five of which are 115

attributed to the synthesis of ABA (nine-cis-epoxycarotenoid cleavage dioxygenases NCEDs 116

AtNCED2356 and 9 Tan et al 2003 Iuchi et al 2001) while two are committed to 117

strigolactone biosynthesis (CCD7MAX3 and CCD8MAX4 Alder et al 2012 Bruno et al 118

2014) Orthologs of CCD1 are involved in the generation of volatile apocarotenoids 119

contributing to flower scents and aroma production (eg saffron Rubio et al 2008 120

Frusciante et al 2014 tomato Schwartz et al 2004) while CCD4 enzymes are involved in 121

citrus peel and chrysanthemum petal coloration (Rodrigo et al 2013) Recent analysis of 122

Arabidopsis mutants revealed a major function of CCD4 in regulating seed carotenoid content 123

with only a minor contribution of CCD1 (Gonzalez-Jorge et al 2013) Moreover CCD4 124

activity was required for the synthesis of an apocarotenoid-derived signalling molecule 125

involved in leaf development and retrograde gene expression (Avendantildeo-Vaacutezquez et al 126

2014) 127

Elevated carotenoid pathway flux caused by PSY overexpression increases carotenoid 128

accumulation in various non-green tissues such as tomato fruits canola seeds cassava roots 129

and rice endosperm (Shewmaker et al 1999 Ye et al 2000 Fraser et al 2002 Welsch et 130

al 2010) Similarly the constitutive overexpression of PSY in Arabidopsis results in 131

dramatically increased carotenoid amounts accumulating as crystals in non-green tissues such 132

as roots and callus yielding β-carotene as the main product (Maass et al 2009) However 133

leaves of the very same plants do not show altered pigment composition and phytoene or 134

other pathway intermediates are not detected Similarly increased levels of active PSY 135

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7

protein achieved though overexpression of the ORANGE protein exclusively affect 136

carotenoid amounts in roots but not in leaves (Zhou et al 2015) Leaves from constitutively 137

PSY-overexpressing tomato and tobacco plants are also reported to show only slightly 138

increased carotenoid levels compared to the wild-type control (Fray et al 1995 Busch et al 139

2002) These contrasting responses of leaves versus non-green tissues to elevated pathway 140

flux suggest fundamental differences in the modes of carotenoid formation andor 141

degradation 142

In the present work we identified xanthophyll-derived apocarotenoid glycosides in 143

Arabidopsis leaves which increase upon higher pathway flux This suggests apocarotenoid 144

glycosylation to function as a valve regulating carotenoid steady-state levels in leaves The 145

analysis of Arabidopsis mutants enabled us to conclude on potential precursor carotenoids and 146

to assess the contribution of carotenoid cleavage enzymes on their formation Moreover 147

apocarotenoids but not the identified glycosides were increased in carotenoid-148

hyperaccumulating roots indicating tissue-specifically different modes of carotenoid turnover 149

regulation 150

151

152

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8

RESULTS 153

Carotenoid pathway flux and PSY localization upon increased PSY protein levels 154

In Arabidopsis roots the constitutive AtPSY overexpression results in an up to 100-fold 155

increased carotenoid accumulation In contrast leaves of these lines do not respond and 156

contain carotenoid amounts like the wild type although PSY protein levels are strongly 157

elevated (Maass et al 2009) Increased pathway flux might be compensated by higher 158

turnover of leaf carotenoids Alternatively overexpressed PSY protein might be 159

enzymatically inactive In order to discriminate we determined the phytoene synthesis rates 160

in detached leaves using the phytoene desaturase inhibitor norflurazon (NFZ) assuming that 161

phytoene exhibits an increased resistance towards degradation processes (Simkin et al 2003) 162

We followed an established protocol consisting of a two-hour preincubation in the dark 163

followed by four-hour illumination on NFZ solution (Beisel et al 2011) Wild-type leaves 164

accumulated about 20 mmol phytoene per mol chl a+b (or 01 microg phytoene per mg DW) 165

within four hours exposure to control light (Figure 1) while high light intensity further 166

increased phytoene levels by fivefold reaching 100 mmol phytoene per mol chl a+b 167

NFZ-treated leaves of AtPSY-overexpressing lines illuminated with high light accumulated 168

the same high phytoene levels of 100 mmol phytoene per mol chl a+b However the 169

illumination with control light yielded about 50 mmol phytoene per mol chl a+b thus 25-fold 170

higher levels compared with wild-type leaves This indicates that higher PSY protein amounts 171

in the transgenics do increase the pathway flux although leaf steady-state carotenoid levels 172

remain unaffected At high light intensities phytoene synthesis is apparently limited by other 173

factors such as an exhausted precursor pool 174

The twofold increased phytoene synthesis capacity in AtPSY-overexpressing lines contrasts 175

with the much larger up to 20-fold higher PSY protein levels in leaves (Maass et al 2009) 176

and in chloroplast extracts (Figure 1D) Chloroplast sub-fractionation revealed that PSY was 177

in fact elevated by only about twofold in the membranes the remainder is apparently soluble 178

in the stroma and therefore inactive In vitro measurements of PSY activity confirmed an 179

almost twofold higher PSY activity in the membrane fractions (0157 +- 0062 nmol [14C]-180

phytoene min-1 in At22 versus 0082 +- 002 nmol [14C]-phytoene min-1 in wt a TLC scan is 181

supplied in Supplemental Figure 1) while phytoene synthesis was not detectable in stroma 182

fractions (Figure 1C) 183

184

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9

Identification of apocarotenoid glycosides in Arabidopsis leaves 185

An increased pathway flux not leading to higher carotenoid levels suggests increased 186

carotenoid turnover This is thought to occur predominantly at the β-carotene level as 187

revealed by 14CO2 pulse-chase labeling and the abundance of oxidation products derived 188

from β-carotene (Beisel et al 2010 Ramel et al 2012a) In leaves of the wild type and 189

AtPSY-overexpressing lines approximately constant β-carotene steady-state levels were 190

confirmed by measuring 14CO2-incorporation into β-carotene (Supplemental Figure 2A) 191

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10

However levels of long-chain β-carotene degradation products remained similarly largely 192

unchanged as revealed by the LC-MS analyses of β-apo-14rsquo- β-apo-12rsquo- β-apo-10rsquo- β-apo-193

8rsquo-carotenal β-apo-13-carotenone and retinal (Supplemental Figure 2B) Moreover 194

carotenoid-derived short-chain volatiles are not found in Arabidopsis leaves (Aharoni et al 195

2003) with the exception of β-cyclocitral and β-ionone which are reported to be generated 196

upon photooxidative stress (Ramel et al 2012b Havaux 2013) We also did not detect these 197

volatiles by GC-MS analysis neither upon headspace sampling nor by the use of various 198

extraction protocols We therefore resorted to analyzing apocarotenoid glycosides (AGs) 199

which are known from a variety of plants especially grapevine where they contribute to the 200

aroma (Winterhalter and Schreier 1995) 201

An extraction protocol for grapevine was adapted which included the enzymatic liberation of 202

the aglycons from aqueous extracts followed by GC-MS analysis (Mathieu et al 2005) This 203

led to the identification of the following four aglycons in Arabidopsis wild-type leaves (the 204

relative peak area percentage is given in parentheses) 3-oxo-α-ionol (apo1 4 ) 3-oxo-α-205

ionone (apo2 3 ) 3-hydroxy-56-epoxy-β-ionone (apo3 80 ) and 6-hydroxy-3-oxo-α-206

ionone (apo4 13 ) Three of these AGs are also identified in grapevine leaf extracts (variety 207

Muumlller-Thurgau) The GC-MS traces representing undigested and glycosidase-treated leaf 208

extracts are shown in Figure 2 Details on the identification of these compounds are shown in 209

Supplemental Figure 3-6 and their characteristics are summarized in Supplemental Table I 210

Xanthophylls appear as the likely precursors for the aglycons identified possible precursor-211

product relationships are shown in Figure 3 The non-hydroxylated apocarotenoid 3-oxo-α-212

ionone (apo2) is probably formed from 3-oxo-α-ionol (apo1) upon oxidation of the hydroxyl 213

group following deglycosylation Direct precursors for 3-oxo-α-ionol (apo1) may be α-ring 214

hydroxylated xanthophylls like lutein and the mono-hydroxylated intermediate α-215

cryptoxanthin Alternatively β-ring hydroxylated xanthophylls like zeaxanthin 216

antheraxanthin and the intermediates β-cryptoxanthin and zeinoxanthin might also serve as 217

precursors requiring β- to ε-ring conversion upon enzymatic liberation this being supported 218

by observations in grapevine (Mathieu et al 2009) 6-Hydroxy-3-oxo-α-ionone (apo4) 219

probably represents a derivative of 3-hydroxy-56-epoxy-β-ionone (apo3) formed upon 220

reduction of the epoxy to a hydroxyl group (Enzell 1985) 3-hydroxy-56-epoxy-β-ionone 221

(apo3) can be formed from epoxy-xanthophylls thus antheraxantin violaxanthin and 222

neoxanthin 223

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11

Interestingly the relative quantification of AGs revealed higher levels in leaves of AtPSY-224

overexpressing lines than in wild-type leaves which correlates with the increased pathway 225

flux determined above (Figure 2 GC-MS chromatograms in Supplemental Figure 7) 226

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12

Hydroxy-xanthophyll derived apocarotenoids (apo1 and apo2) increased about 5-fold and 227

those derived from epoxy-xanthophylls (apo3 and apo4) increased about threefold 228

Considering the reported light stress-induced formation of β-cyclocitral and other carotenoid 229

breakdown products (Ramel et al 2012b) we further examined a possibly increased 230

apocarotenoid glycosylation under high-light stress However both wild-type leaves as well 231

as those from the AtPSY-overexpressing line showed no significant changes in their 232

apocarotenoid aglycon levels after four hours illumination with 1500 micromol photons m-2s-1 233

234

Involvement of enzymatic carotenoid breakdown in apocarotenoid aglycon formation 235

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13

The AGs identified in this work and most of those identified by others in Vitis Boronia and 236

various fruits exhibit a length of 13 carbon atoms (Winterhalter and Skouroumounis 1997 237

Mendes-Pinto 2009 Cooper et al 2011) AGs with various chain lengths would be expected 238

in case of non-enzymatic carotenoid cleavage In order to determine the contribution of 239

enzymatic cleavage we took advantage of Arabidopsis lines deficient in the carotenoid 240

cleavage enzymes CCD1 and CCD4 (Gonzalez-Jorge et al 2013) which exhibit a broad 241

substrate specificity (Bruno et al 2015 Auldridge et al 2006 Vogel et al 2008) The 242

carotenoid levels in leaves from four week old plants of ccd4-1 and a ccd1-1 ccd4-1 double 243

mutant were similar to the wild type (see Table I) However leaves from both the ccd4-1 and 244

the ccd1-1 ccd4-1 mutant showed strongly reduced levels of all AGs with major reductions in 245

3-hydroxy-56-epoxy-β-ionone (apo3) 6-hydroxy-3-oxo-α-ionone (apo4) and 3-oxo-α-ionol 246

(apo1 Figure 4 see Supplemental Figure 8 for GC-MS traces) With 6-hydroxy-3-oxo-α-247

ionone (apo4) as an exception there was no significant difference in AG levels comparing the 248

single and double mutant lines (p gt 025) The residual presence of apocarotenoid aglycons in 249

ccd1-1 ccd4-1 leaves thus suggests additional mechanisms yielding the same cleavage 250

products These results indicate a predominantly enzymatic origin of AGs with a major 251

contribution of CCD4 while CCD1 plays a minor role 252

Given this role of CCD4 and the constant carotenoid levels in leaves of AtPSY-overexpressing 253

lines we challenged flux compensation by crossing AtPSY-overexpressing lines with the 254

ccd4-1 and the ccd1-1 ccd4-1 mutant lines While seedlings heterozygous for the ccd4-1 255

mutation grew indistinguishable from wild-type plants individuals homozygous for ccd4-1 256

developed light-green cotyledons which quickly bleached and died In one weeks old 257

homozygous seedlings carotenoid and chlorophyll contents were reduced by about 40 258

compared to the wild type and pathway intermediates were not detected (Supplemental Figure 259

9) Apparently formation of xanthophyll breakdown products not formed by cleavage through 260

CCD4 can be tolerated only at physiological pathway fluxes However a further increase 261

through higher PSY abundance is lethal presumably due to the excessive presence of 262

apocarotenoids generated by other mechanisms 263

264

Identification of xanthophyll precursors for apocarotenoid glycosides 265

We took advantage of the altered leaf xanthophyll patterns found in two Arabidopsis 266

cytochrome P450-type carotene hydroxylase mutants CYP97C1 catalyzes the hydroxylation 267

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14

of the α-ionone ring present in α-carotene The respective lut1 mutant is therefore 268

characterized by the absence of lutein and the accumulation of the β-ring mono-hydroxylated 269

α-carotene derivative zeinoxanthin (Kim et al 2009 Table I) The mutant leaves showed 270

about threefold increased levels of 3-oxo-α-ionol (apo1) while other AGs remained 271

unchanged and no additional AGs were detected (Figure 4B see Supplemental Figure 10 for 272

GC-MS traces) This excludes lutein as precursor for AGs identified In contrast the 273

increased levels of β-ring hydroxylated xanthophylls in lut1 leaves suggest zeaxanthin 274

antheraxanthin and zeinoxanthin as precursor explaining enhanced levels of 3-oxo-α-ionol 275

(apo1) 276

The second cytochrome P450-type hydroxylase CYP97A3 catalyzes the hydroxylation of β-277

ring xanthophylls and prefers α-carotene as substrate but also shows some β-carotene 278

hydroxylation activity Its absence defines the lut5 phenotype which accumulates increased 279

levels of α-carotene accompanied by an almost equivalent reduction of β-carotene In 280

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15

addition epoxy-xanthophylls like violaxanthin and neoxanthin are reduced (Kim and 281

DellaPenna 2006) In agreement with the suggested origin of 3-hydroxy-56-epoxy-β-ionone 282

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) from epoxy-xanthophylls (Figure 3) leaves of 283

lut5 had strongly reduced levels of these two AGs while those with a suggested origin from 284

hydroxylated xanthophylls decreased only slightly Furthermore both epoxy-xanthophyll 285

derived apocarotenoids decreased proportionally which is in favor of the secondary formation 286

of 6-hydroxy-3-oxo-α-ionone (apo4) from 3-hydroxy-56-epoxy-β-ionone (apo3) 287

288

Analysis of apocarotenoids in roots 289

AGs were also analyzed in roots which accumulate high amounts of β-carotene in response to 290

AtPSY overexpression reflecting low activity of carotene hydroxylases (Maass et al 2009) 291

Although the aglycons of several well-known glycoconjugated precursors were released such 292

as coniferyl alcohol (from coniferin Lewis and Yamamoto 1990) and indol-3-acetonitril 293

(from brassicin Normanly and Bartel 1999 see Supplemental Figure 11) we could not 294

detect any AGs neither in wild-type nor in AtPSY-overexpressing roots Given the xanthophyll 295

origin of the AGs identified this may be attributed to the much lower xanthophyll abundance 296

in roots than in leaves This is contrasted by the presence of long-chain free β-apocarotenals 297

in roots which were up to 50-fold higher in AtPSY-overexpressing lines compared to the wild 298

type (Figure 5) As already mentioned above these were not increased in leaves in response to 299

increased pathway fluxes indicating different mechanisms operating in both tissues 300

301

302

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16

DISCUSSION 303

Compensatory responses towards increased carotenoid flux in Arabidopsis leaves 304

The carotenoid pathway capacity in Arabidopsis leaves is increased in response to the 305

overexpression of the rate-limiting enzyme PSY This is not at all evident from carotenoid 306

levels but can be shown in derived non-green cells like calli and roots (Maass et al 2009) 307

Alternatively phytoene accumulation upon NFZ inhibition can be used as a readout in leaves 308

because most carotenoid turnover apparently and conceivably happens downstream of 309

phytoene This revealed a doubling of phytoene amounts in AtPSY-overexpressing lines 310

compared to wild-type leaves within four hours illumination with control light intensities 311

(Figure 1) and is further confirmed by in vitro measurements of PSY enzyme activity with 312

isolated plastid membranes Using these data it can be estimated that wild-type leaf carotenoid 313

homeostasis entails the de novo synthesis of about 14 of the carotenoids present (or 04 microg 314

mg DW-1) during a 16 hours light period which is enhanced to 28 in AtPSY-overexpressing 315

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17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

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89 90 91 92 93 94 95 960

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Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

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2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

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B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

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Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

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3 TIC (CI)

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OHO

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Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

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lutein

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Supplemental Figure 9

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Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

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OH

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 2: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

2

Tissue-specific Apocarotenoid Glycosylation Contributes to Carotenoid Homeostasis in 19

Arabidopsis Leaves 20

Kira Laumltari1 Florian Wuumlst1 Michaela Huumlbner1 Patrick Schaub1 Kim Gabriele Beisel2 Shizue 21

Matsubara2 Peter Beyer1 Ralf Welsch1 22

23

1University of Freiburg Faculty of Biology II D79104 Freiburg Germany 24 2IBG-2 Pflanzenwissenschaften Forschungszentrum Juumllich D52425 Juumllich Germany 25

26

27

Key words 28

phytoene synthase Arabidopsis apocarotenoids apocarotenoid glycosides norisoprenoids 29

carotene hydroxylase carotenoid cleavage dioxygenase 30

31

SUMMARY 32

Arabidopsis leaves form apocarotenoid glycosides derived from a CAROTENOID 33

CLEAVAGE DIOXYGENASE 4 mediated cleavage of xanthophylls which contribute to 34

biosynthetic pathway flux compensation 35

36

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FOOTNOTES 37

38

Financial source 39

40

This work was supported by the HarvestPlus research consortium and a DFG Research Grant 41

to RW (WE47312-1) 42

43

44

Corresponding author 45

Ralf Welsch 46

ralfwelschbiologieuni-freiburgde 47

48

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ABSTRACT 49

Attaining defined steady-state carotenoid levels requires balancing of the rates governing their 50

synthesis and metabolism Phytoene formation mediated by phytoene synthase (PSY) is rate-51

limiting in the biosynthesis of carotenoids while carotenoid catabolism involves a multitude 52

of non-enzymatic and enzymatic processes We investigated carotenoid and apocarotenoid 53

formation in Arabidopsis in response to enhanced pathway flux upon PSY overexpression 54

This resulted in a dramatic accumulation of mainly β-carotene in roots and non-green calli 55

while carotenoids remained unchanged in leaves We show that in chloroplasts surplus PSY 56

was partially soluble localized in the stroma and therefore inactive while the membrane-57

bound portion mediated a doubling of phytoene synthesis rates Increased pathway flux was 58

not compensated by enhanced generation of long-chain apocarotenals but resulted in higher 59

levels of C13-apocarotenoid glycosides (AGs) Using mutant lines deficient in carotenoid 60

cleavage dioxygenases (CCD) we identified CCD4 as being mainly responsible for the 61

majority of AGs formed Moreover changed AG patterns in the carotene hydroxylase mutants 62

lut1 and lut5 exhibiting altered leaf carotenoids allowed to define specific xanthophyll species 63

as precursors for the apocarotenoid aglycons detected In contrast to leaves carotenoid 64

hyperaccumulating roots contained higher levels of β-carotene derived apocarotenals while 65

AGs were absent These contrasting responses are associated with tissue-specific capacities to 66

synthesize xanthophylls which thus determine the modes of carotenoid accumulation and 67

apocarotenoid formation 68

69

70

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INTRODUCTION 71

In plants the synthesis of carotenoids is plastid-localized with the plastid type determining 72

their function (Ruiz-Sola and Rodriacuteguez-Concepcioacuten 2011 Nisar et al 2015) In non-73

photosynthetic chromoplasts carotenoids and their volatile derivatives attract pollinating 74

insects or zoochoric animals Here carotenoids are sequestered in diverse sub-organellar 75

structures which can be tubulous globulous membranous or crystalline (Sitte et al 1980 76

Egea et al 2010) In chloroplasts carotenoids are present in light-harvesting complex 77

proteins and in photosynthetic reaction centres They extend the light spectrum used for 78

photosynthetic energy transformation and act photoprotectively due to their ability to quench 79

excitation energy from singlet or triplet state chlorophylls thereby decreasing the risk that 80

singlet oxygen forms (Demmig-Adams and Adams 2002 Niyogi 1999) Furthermore the 81

regulated epoxidation and de-epoxidation of zeaxanthin in the xanthophyll cycle contributes 82

to the non-photochemical quenching of energy (Niyogi 1999 Ballottari et al 2014) In 83

contrast to these processes which maintain carotenoid integrity carotenoids are also capable 84

to chemically quench singlet oxygen by their own oxidation which is accompanied by the 85

release of various carotenoid degradation products (Ramel et al 2012a Ramel et al 2012c) 86

The various functions of carotenoids require their dynamic qualitative and quantitative tuning 87

in response to environmental conditions to attain and maintain adequate steady-state 88

concentrations This includes both the regulation of their synthesis as well as the formation 89

release or disposal of their breakdown products The synthesis of carotenoids is initiated by 90

the condensation of two molecules geranylgeranyl diphosphate to form phytoene catalyzed 91

by the enzyme phytoene synthase (PSY) which is considered as the rate-limiting enzyme 92

(von Lintig et al 1997 Li et al 2008 Rodriacuteguez-Villaloacuten et al 2009 Welsch et al 2010 93

Zhou et al 2015) In plants two desaturases phytoene desaturase and ζ-carotene desaturase 94

and two carotene cis-trans-isomerases convert the colorless phytoene into the red-colored all-95

trans-lycopene (Isaacson et al 2002 Park et al 2002 Chen et al 2010 Yu et al 2011) 96

Two lycopene cyclases introduce either β- or ε-ionone rings yielding in α-(εβ-)-carotene and 97

β-(ββ)-carotene In Arabidopsis four enzymes hydroxylate carotenes with partially 98

overlapping substrate specificity (Kim et al 2009) Two non-heme iron-dependent 99

hydroxylases (BCH1 and BCH2) convert β-carotene into zeaxanthin The second set of 100

hydrolxyases CYP97A3 and CYP97C1 prefer α-carotene belong to the cytochrome P450 101

enzyme family and produce zeinoxanthin and lutein respectively Absence of each 102

cytochrome P450 hydroxylase constitutes a distinct phenotype - named lut5 for CYP97A3 103

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6

and lut1 for CYP97C1 deficiency - characterized by altered pigment compositions and the 104

accumulation of monohydroxylated intermediates while deficiency in BCH1 and BCH2 does 105

not affect the pigment composition 106

In green tissues photooxidative destruction seemingly predominates and consumes 107

carotenoids (Simkin et al 2003) Moreover 14CO2 pulse-chase experiments with Arabidopsis 108

leaves identified α- and β-carotene as the main targets for photooxidation while xanthophylls 109

were less affected (Beisel et al 2010) Oxidation assays with β-carotene showed epoxy- and 110

peroxy-derivatives as the main primary products which however undergo further reactions 111

yielding more stable degradation products which are in part the same apocarotenalsones as 112

those being produced enzymatically (Ramel et al 2012a Ramel et al 2012c) 113

In Arabidopsis genes coding for carotenoid cleaving enzymes (carotenoid cleavage 114

dioxygenases CCDs) form a small gene family comprising nine members five of which are 115

attributed to the synthesis of ABA (nine-cis-epoxycarotenoid cleavage dioxygenases NCEDs 116

AtNCED2356 and 9 Tan et al 2003 Iuchi et al 2001) while two are committed to 117

strigolactone biosynthesis (CCD7MAX3 and CCD8MAX4 Alder et al 2012 Bruno et al 118

2014) Orthologs of CCD1 are involved in the generation of volatile apocarotenoids 119

contributing to flower scents and aroma production (eg saffron Rubio et al 2008 120

Frusciante et al 2014 tomato Schwartz et al 2004) while CCD4 enzymes are involved in 121

citrus peel and chrysanthemum petal coloration (Rodrigo et al 2013) Recent analysis of 122

Arabidopsis mutants revealed a major function of CCD4 in regulating seed carotenoid content 123

with only a minor contribution of CCD1 (Gonzalez-Jorge et al 2013) Moreover CCD4 124

activity was required for the synthesis of an apocarotenoid-derived signalling molecule 125

involved in leaf development and retrograde gene expression (Avendantildeo-Vaacutezquez et al 126

2014) 127

Elevated carotenoid pathway flux caused by PSY overexpression increases carotenoid 128

accumulation in various non-green tissues such as tomato fruits canola seeds cassava roots 129

and rice endosperm (Shewmaker et al 1999 Ye et al 2000 Fraser et al 2002 Welsch et 130

al 2010) Similarly the constitutive overexpression of PSY in Arabidopsis results in 131

dramatically increased carotenoid amounts accumulating as crystals in non-green tissues such 132

as roots and callus yielding β-carotene as the main product (Maass et al 2009) However 133

leaves of the very same plants do not show altered pigment composition and phytoene or 134

other pathway intermediates are not detected Similarly increased levels of active PSY 135

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protein achieved though overexpression of the ORANGE protein exclusively affect 136

carotenoid amounts in roots but not in leaves (Zhou et al 2015) Leaves from constitutively 137

PSY-overexpressing tomato and tobacco plants are also reported to show only slightly 138

increased carotenoid levels compared to the wild-type control (Fray et al 1995 Busch et al 139

2002) These contrasting responses of leaves versus non-green tissues to elevated pathway 140

flux suggest fundamental differences in the modes of carotenoid formation andor 141

degradation 142

In the present work we identified xanthophyll-derived apocarotenoid glycosides in 143

Arabidopsis leaves which increase upon higher pathway flux This suggests apocarotenoid 144

glycosylation to function as a valve regulating carotenoid steady-state levels in leaves The 145

analysis of Arabidopsis mutants enabled us to conclude on potential precursor carotenoids and 146

to assess the contribution of carotenoid cleavage enzymes on their formation Moreover 147

apocarotenoids but not the identified glycosides were increased in carotenoid-148

hyperaccumulating roots indicating tissue-specifically different modes of carotenoid turnover 149

regulation 150

151

152

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RESULTS 153

Carotenoid pathway flux and PSY localization upon increased PSY protein levels 154

In Arabidopsis roots the constitutive AtPSY overexpression results in an up to 100-fold 155

increased carotenoid accumulation In contrast leaves of these lines do not respond and 156

contain carotenoid amounts like the wild type although PSY protein levels are strongly 157

elevated (Maass et al 2009) Increased pathway flux might be compensated by higher 158

turnover of leaf carotenoids Alternatively overexpressed PSY protein might be 159

enzymatically inactive In order to discriminate we determined the phytoene synthesis rates 160

in detached leaves using the phytoene desaturase inhibitor norflurazon (NFZ) assuming that 161

phytoene exhibits an increased resistance towards degradation processes (Simkin et al 2003) 162

We followed an established protocol consisting of a two-hour preincubation in the dark 163

followed by four-hour illumination on NFZ solution (Beisel et al 2011) Wild-type leaves 164

accumulated about 20 mmol phytoene per mol chl a+b (or 01 microg phytoene per mg DW) 165

within four hours exposure to control light (Figure 1) while high light intensity further 166

increased phytoene levels by fivefold reaching 100 mmol phytoene per mol chl a+b 167

NFZ-treated leaves of AtPSY-overexpressing lines illuminated with high light accumulated 168

the same high phytoene levels of 100 mmol phytoene per mol chl a+b However the 169

illumination with control light yielded about 50 mmol phytoene per mol chl a+b thus 25-fold 170

higher levels compared with wild-type leaves This indicates that higher PSY protein amounts 171

in the transgenics do increase the pathway flux although leaf steady-state carotenoid levels 172

remain unaffected At high light intensities phytoene synthesis is apparently limited by other 173

factors such as an exhausted precursor pool 174

The twofold increased phytoene synthesis capacity in AtPSY-overexpressing lines contrasts 175

with the much larger up to 20-fold higher PSY protein levels in leaves (Maass et al 2009) 176

and in chloroplast extracts (Figure 1D) Chloroplast sub-fractionation revealed that PSY was 177

in fact elevated by only about twofold in the membranes the remainder is apparently soluble 178

in the stroma and therefore inactive In vitro measurements of PSY activity confirmed an 179

almost twofold higher PSY activity in the membrane fractions (0157 +- 0062 nmol [14C]-180

phytoene min-1 in At22 versus 0082 +- 002 nmol [14C]-phytoene min-1 in wt a TLC scan is 181

supplied in Supplemental Figure 1) while phytoene synthesis was not detectable in stroma 182

fractions (Figure 1C) 183

184

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Identification of apocarotenoid glycosides in Arabidopsis leaves 185

An increased pathway flux not leading to higher carotenoid levels suggests increased 186

carotenoid turnover This is thought to occur predominantly at the β-carotene level as 187

revealed by 14CO2 pulse-chase labeling and the abundance of oxidation products derived 188

from β-carotene (Beisel et al 2010 Ramel et al 2012a) In leaves of the wild type and 189

AtPSY-overexpressing lines approximately constant β-carotene steady-state levels were 190

confirmed by measuring 14CO2-incorporation into β-carotene (Supplemental Figure 2A) 191

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10

However levels of long-chain β-carotene degradation products remained similarly largely 192

unchanged as revealed by the LC-MS analyses of β-apo-14rsquo- β-apo-12rsquo- β-apo-10rsquo- β-apo-193

8rsquo-carotenal β-apo-13-carotenone and retinal (Supplemental Figure 2B) Moreover 194

carotenoid-derived short-chain volatiles are not found in Arabidopsis leaves (Aharoni et al 195

2003) with the exception of β-cyclocitral and β-ionone which are reported to be generated 196

upon photooxidative stress (Ramel et al 2012b Havaux 2013) We also did not detect these 197

volatiles by GC-MS analysis neither upon headspace sampling nor by the use of various 198

extraction protocols We therefore resorted to analyzing apocarotenoid glycosides (AGs) 199

which are known from a variety of plants especially grapevine where they contribute to the 200

aroma (Winterhalter and Schreier 1995) 201

An extraction protocol for grapevine was adapted which included the enzymatic liberation of 202

the aglycons from aqueous extracts followed by GC-MS analysis (Mathieu et al 2005) This 203

led to the identification of the following four aglycons in Arabidopsis wild-type leaves (the 204

relative peak area percentage is given in parentheses) 3-oxo-α-ionol (apo1 4 ) 3-oxo-α-205

ionone (apo2 3 ) 3-hydroxy-56-epoxy-β-ionone (apo3 80 ) and 6-hydroxy-3-oxo-α-206

ionone (apo4 13 ) Three of these AGs are also identified in grapevine leaf extracts (variety 207

Muumlller-Thurgau) The GC-MS traces representing undigested and glycosidase-treated leaf 208

extracts are shown in Figure 2 Details on the identification of these compounds are shown in 209

Supplemental Figure 3-6 and their characteristics are summarized in Supplemental Table I 210

Xanthophylls appear as the likely precursors for the aglycons identified possible precursor-211

product relationships are shown in Figure 3 The non-hydroxylated apocarotenoid 3-oxo-α-212

ionone (apo2) is probably formed from 3-oxo-α-ionol (apo1) upon oxidation of the hydroxyl 213

group following deglycosylation Direct precursors for 3-oxo-α-ionol (apo1) may be α-ring 214

hydroxylated xanthophylls like lutein and the mono-hydroxylated intermediate α-215

cryptoxanthin Alternatively β-ring hydroxylated xanthophylls like zeaxanthin 216

antheraxanthin and the intermediates β-cryptoxanthin and zeinoxanthin might also serve as 217

precursors requiring β- to ε-ring conversion upon enzymatic liberation this being supported 218

by observations in grapevine (Mathieu et al 2009) 6-Hydroxy-3-oxo-α-ionone (apo4) 219

probably represents a derivative of 3-hydroxy-56-epoxy-β-ionone (apo3) formed upon 220

reduction of the epoxy to a hydroxyl group (Enzell 1985) 3-hydroxy-56-epoxy-β-ionone 221

(apo3) can be formed from epoxy-xanthophylls thus antheraxantin violaxanthin and 222

neoxanthin 223

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11

Interestingly the relative quantification of AGs revealed higher levels in leaves of AtPSY-224

overexpressing lines than in wild-type leaves which correlates with the increased pathway 225

flux determined above (Figure 2 GC-MS chromatograms in Supplemental Figure 7) 226

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12

Hydroxy-xanthophyll derived apocarotenoids (apo1 and apo2) increased about 5-fold and 227

those derived from epoxy-xanthophylls (apo3 and apo4) increased about threefold 228

Considering the reported light stress-induced formation of β-cyclocitral and other carotenoid 229

breakdown products (Ramel et al 2012b) we further examined a possibly increased 230

apocarotenoid glycosylation under high-light stress However both wild-type leaves as well 231

as those from the AtPSY-overexpressing line showed no significant changes in their 232

apocarotenoid aglycon levels after four hours illumination with 1500 micromol photons m-2s-1 233

234

Involvement of enzymatic carotenoid breakdown in apocarotenoid aglycon formation 235

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13

The AGs identified in this work and most of those identified by others in Vitis Boronia and 236

various fruits exhibit a length of 13 carbon atoms (Winterhalter and Skouroumounis 1997 237

Mendes-Pinto 2009 Cooper et al 2011) AGs with various chain lengths would be expected 238

in case of non-enzymatic carotenoid cleavage In order to determine the contribution of 239

enzymatic cleavage we took advantage of Arabidopsis lines deficient in the carotenoid 240

cleavage enzymes CCD1 and CCD4 (Gonzalez-Jorge et al 2013) which exhibit a broad 241

substrate specificity (Bruno et al 2015 Auldridge et al 2006 Vogel et al 2008) The 242

carotenoid levels in leaves from four week old plants of ccd4-1 and a ccd1-1 ccd4-1 double 243

mutant were similar to the wild type (see Table I) However leaves from both the ccd4-1 and 244

the ccd1-1 ccd4-1 mutant showed strongly reduced levels of all AGs with major reductions in 245

3-hydroxy-56-epoxy-β-ionone (apo3) 6-hydroxy-3-oxo-α-ionone (apo4) and 3-oxo-α-ionol 246

(apo1 Figure 4 see Supplemental Figure 8 for GC-MS traces) With 6-hydroxy-3-oxo-α-247

ionone (apo4) as an exception there was no significant difference in AG levels comparing the 248

single and double mutant lines (p gt 025) The residual presence of apocarotenoid aglycons in 249

ccd1-1 ccd4-1 leaves thus suggests additional mechanisms yielding the same cleavage 250

products These results indicate a predominantly enzymatic origin of AGs with a major 251

contribution of CCD4 while CCD1 plays a minor role 252

Given this role of CCD4 and the constant carotenoid levels in leaves of AtPSY-overexpressing 253

lines we challenged flux compensation by crossing AtPSY-overexpressing lines with the 254

ccd4-1 and the ccd1-1 ccd4-1 mutant lines While seedlings heterozygous for the ccd4-1 255

mutation grew indistinguishable from wild-type plants individuals homozygous for ccd4-1 256

developed light-green cotyledons which quickly bleached and died In one weeks old 257

homozygous seedlings carotenoid and chlorophyll contents were reduced by about 40 258

compared to the wild type and pathway intermediates were not detected (Supplemental Figure 259

9) Apparently formation of xanthophyll breakdown products not formed by cleavage through 260

CCD4 can be tolerated only at physiological pathway fluxes However a further increase 261

through higher PSY abundance is lethal presumably due to the excessive presence of 262

apocarotenoids generated by other mechanisms 263

264

Identification of xanthophyll precursors for apocarotenoid glycosides 265

We took advantage of the altered leaf xanthophyll patterns found in two Arabidopsis 266

cytochrome P450-type carotene hydroxylase mutants CYP97C1 catalyzes the hydroxylation 267

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14

of the α-ionone ring present in α-carotene The respective lut1 mutant is therefore 268

characterized by the absence of lutein and the accumulation of the β-ring mono-hydroxylated 269

α-carotene derivative zeinoxanthin (Kim et al 2009 Table I) The mutant leaves showed 270

about threefold increased levels of 3-oxo-α-ionol (apo1) while other AGs remained 271

unchanged and no additional AGs were detected (Figure 4B see Supplemental Figure 10 for 272

GC-MS traces) This excludes lutein as precursor for AGs identified In contrast the 273

increased levels of β-ring hydroxylated xanthophylls in lut1 leaves suggest zeaxanthin 274

antheraxanthin and zeinoxanthin as precursor explaining enhanced levels of 3-oxo-α-ionol 275

(apo1) 276

The second cytochrome P450-type hydroxylase CYP97A3 catalyzes the hydroxylation of β-277

ring xanthophylls and prefers α-carotene as substrate but also shows some β-carotene 278

hydroxylation activity Its absence defines the lut5 phenotype which accumulates increased 279

levels of α-carotene accompanied by an almost equivalent reduction of β-carotene In 280

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15

addition epoxy-xanthophylls like violaxanthin and neoxanthin are reduced (Kim and 281

DellaPenna 2006) In agreement with the suggested origin of 3-hydroxy-56-epoxy-β-ionone 282

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) from epoxy-xanthophylls (Figure 3) leaves of 283

lut5 had strongly reduced levels of these two AGs while those with a suggested origin from 284

hydroxylated xanthophylls decreased only slightly Furthermore both epoxy-xanthophyll 285

derived apocarotenoids decreased proportionally which is in favor of the secondary formation 286

of 6-hydroxy-3-oxo-α-ionone (apo4) from 3-hydroxy-56-epoxy-β-ionone (apo3) 287

288

Analysis of apocarotenoids in roots 289

AGs were also analyzed in roots which accumulate high amounts of β-carotene in response to 290

AtPSY overexpression reflecting low activity of carotene hydroxylases (Maass et al 2009) 291

Although the aglycons of several well-known glycoconjugated precursors were released such 292

as coniferyl alcohol (from coniferin Lewis and Yamamoto 1990) and indol-3-acetonitril 293

(from brassicin Normanly and Bartel 1999 see Supplemental Figure 11) we could not 294

detect any AGs neither in wild-type nor in AtPSY-overexpressing roots Given the xanthophyll 295

origin of the AGs identified this may be attributed to the much lower xanthophyll abundance 296

in roots than in leaves This is contrasted by the presence of long-chain free β-apocarotenals 297

in roots which were up to 50-fold higher in AtPSY-overexpressing lines compared to the wild 298

type (Figure 5) As already mentioned above these were not increased in leaves in response to 299

increased pathway fluxes indicating different mechanisms operating in both tissues 300

301

302

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16

DISCUSSION 303

Compensatory responses towards increased carotenoid flux in Arabidopsis leaves 304

The carotenoid pathway capacity in Arabidopsis leaves is increased in response to the 305

overexpression of the rate-limiting enzyme PSY This is not at all evident from carotenoid 306

levels but can be shown in derived non-green cells like calli and roots (Maass et al 2009) 307

Alternatively phytoene accumulation upon NFZ inhibition can be used as a readout in leaves 308

because most carotenoid turnover apparently and conceivably happens downstream of 309

phytoene This revealed a doubling of phytoene amounts in AtPSY-overexpressing lines 310

compared to wild-type leaves within four hours illumination with control light intensities 311

(Figure 1) and is further confirmed by in vitro measurements of PSY enzyme activity with 312

isolated plastid membranes Using these data it can be estimated that wild-type leaf carotenoid 313

homeostasis entails the de novo synthesis of about 14 of the carotenoids present (or 04 microg 314

mg DW-1) during a 16 hours light period which is enhanced to 28 in AtPSY-overexpressing 315

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17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

20

40

60

80

100

88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

1 2

3

4

98

20

40

60

80

100

20

40

60

80

100

Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

0

10

20

30

40

50

60

70

80

90

100

88 90 92 94 96 98 100 102Time (min)

0

10

20

30

40

50

60

70

80

90

100

A undigested

B digested1

2

D

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

13703

18006

12405

9103

1030677046503 15213

18609

C F

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

15507

13013

1281477046404 1010819115

E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 3: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

3

FOOTNOTES 37

38

Financial source 39

40

This work was supported by the HarvestPlus research consortium and a DFG Research Grant 41

to RW (WE47312-1) 42

43

44

Corresponding author 45

Ralf Welsch 46

ralfwelschbiologieuni-freiburgde 47

48

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ABSTRACT 49

Attaining defined steady-state carotenoid levels requires balancing of the rates governing their 50

synthesis and metabolism Phytoene formation mediated by phytoene synthase (PSY) is rate-51

limiting in the biosynthesis of carotenoids while carotenoid catabolism involves a multitude 52

of non-enzymatic and enzymatic processes We investigated carotenoid and apocarotenoid 53

formation in Arabidopsis in response to enhanced pathway flux upon PSY overexpression 54

This resulted in a dramatic accumulation of mainly β-carotene in roots and non-green calli 55

while carotenoids remained unchanged in leaves We show that in chloroplasts surplus PSY 56

was partially soluble localized in the stroma and therefore inactive while the membrane-57

bound portion mediated a doubling of phytoene synthesis rates Increased pathway flux was 58

not compensated by enhanced generation of long-chain apocarotenals but resulted in higher 59

levels of C13-apocarotenoid glycosides (AGs) Using mutant lines deficient in carotenoid 60

cleavage dioxygenases (CCD) we identified CCD4 as being mainly responsible for the 61

majority of AGs formed Moreover changed AG patterns in the carotene hydroxylase mutants 62

lut1 and lut5 exhibiting altered leaf carotenoids allowed to define specific xanthophyll species 63

as precursors for the apocarotenoid aglycons detected In contrast to leaves carotenoid 64

hyperaccumulating roots contained higher levels of β-carotene derived apocarotenals while 65

AGs were absent These contrasting responses are associated with tissue-specific capacities to 66

synthesize xanthophylls which thus determine the modes of carotenoid accumulation and 67

apocarotenoid formation 68

69

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INTRODUCTION 71

In plants the synthesis of carotenoids is plastid-localized with the plastid type determining 72

their function (Ruiz-Sola and Rodriacuteguez-Concepcioacuten 2011 Nisar et al 2015) In non-73

photosynthetic chromoplasts carotenoids and their volatile derivatives attract pollinating 74

insects or zoochoric animals Here carotenoids are sequestered in diverse sub-organellar 75

structures which can be tubulous globulous membranous or crystalline (Sitte et al 1980 76

Egea et al 2010) In chloroplasts carotenoids are present in light-harvesting complex 77

proteins and in photosynthetic reaction centres They extend the light spectrum used for 78

photosynthetic energy transformation and act photoprotectively due to their ability to quench 79

excitation energy from singlet or triplet state chlorophylls thereby decreasing the risk that 80

singlet oxygen forms (Demmig-Adams and Adams 2002 Niyogi 1999) Furthermore the 81

regulated epoxidation and de-epoxidation of zeaxanthin in the xanthophyll cycle contributes 82

to the non-photochemical quenching of energy (Niyogi 1999 Ballottari et al 2014) In 83

contrast to these processes which maintain carotenoid integrity carotenoids are also capable 84

to chemically quench singlet oxygen by their own oxidation which is accompanied by the 85

release of various carotenoid degradation products (Ramel et al 2012a Ramel et al 2012c) 86

The various functions of carotenoids require their dynamic qualitative and quantitative tuning 87

in response to environmental conditions to attain and maintain adequate steady-state 88

concentrations This includes both the regulation of their synthesis as well as the formation 89

release or disposal of their breakdown products The synthesis of carotenoids is initiated by 90

the condensation of two molecules geranylgeranyl diphosphate to form phytoene catalyzed 91

by the enzyme phytoene synthase (PSY) which is considered as the rate-limiting enzyme 92

(von Lintig et al 1997 Li et al 2008 Rodriacuteguez-Villaloacuten et al 2009 Welsch et al 2010 93

Zhou et al 2015) In plants two desaturases phytoene desaturase and ζ-carotene desaturase 94

and two carotene cis-trans-isomerases convert the colorless phytoene into the red-colored all-95

trans-lycopene (Isaacson et al 2002 Park et al 2002 Chen et al 2010 Yu et al 2011) 96

Two lycopene cyclases introduce either β- or ε-ionone rings yielding in α-(εβ-)-carotene and 97

β-(ββ)-carotene In Arabidopsis four enzymes hydroxylate carotenes with partially 98

overlapping substrate specificity (Kim et al 2009) Two non-heme iron-dependent 99

hydroxylases (BCH1 and BCH2) convert β-carotene into zeaxanthin The second set of 100

hydrolxyases CYP97A3 and CYP97C1 prefer α-carotene belong to the cytochrome P450 101

enzyme family and produce zeinoxanthin and lutein respectively Absence of each 102

cytochrome P450 hydroxylase constitutes a distinct phenotype - named lut5 for CYP97A3 103

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6

and lut1 for CYP97C1 deficiency - characterized by altered pigment compositions and the 104

accumulation of monohydroxylated intermediates while deficiency in BCH1 and BCH2 does 105

not affect the pigment composition 106

In green tissues photooxidative destruction seemingly predominates and consumes 107

carotenoids (Simkin et al 2003) Moreover 14CO2 pulse-chase experiments with Arabidopsis 108

leaves identified α- and β-carotene as the main targets for photooxidation while xanthophylls 109

were less affected (Beisel et al 2010) Oxidation assays with β-carotene showed epoxy- and 110

peroxy-derivatives as the main primary products which however undergo further reactions 111

yielding more stable degradation products which are in part the same apocarotenalsones as 112

those being produced enzymatically (Ramel et al 2012a Ramel et al 2012c) 113

In Arabidopsis genes coding for carotenoid cleaving enzymes (carotenoid cleavage 114

dioxygenases CCDs) form a small gene family comprising nine members five of which are 115

attributed to the synthesis of ABA (nine-cis-epoxycarotenoid cleavage dioxygenases NCEDs 116

AtNCED2356 and 9 Tan et al 2003 Iuchi et al 2001) while two are committed to 117

strigolactone biosynthesis (CCD7MAX3 and CCD8MAX4 Alder et al 2012 Bruno et al 118

2014) Orthologs of CCD1 are involved in the generation of volatile apocarotenoids 119

contributing to flower scents and aroma production (eg saffron Rubio et al 2008 120

Frusciante et al 2014 tomato Schwartz et al 2004) while CCD4 enzymes are involved in 121

citrus peel and chrysanthemum petal coloration (Rodrigo et al 2013) Recent analysis of 122

Arabidopsis mutants revealed a major function of CCD4 in regulating seed carotenoid content 123

with only a minor contribution of CCD1 (Gonzalez-Jorge et al 2013) Moreover CCD4 124

activity was required for the synthesis of an apocarotenoid-derived signalling molecule 125

involved in leaf development and retrograde gene expression (Avendantildeo-Vaacutezquez et al 126

2014) 127

Elevated carotenoid pathway flux caused by PSY overexpression increases carotenoid 128

accumulation in various non-green tissues such as tomato fruits canola seeds cassava roots 129

and rice endosperm (Shewmaker et al 1999 Ye et al 2000 Fraser et al 2002 Welsch et 130

al 2010) Similarly the constitutive overexpression of PSY in Arabidopsis results in 131

dramatically increased carotenoid amounts accumulating as crystals in non-green tissues such 132

as roots and callus yielding β-carotene as the main product (Maass et al 2009) However 133

leaves of the very same plants do not show altered pigment composition and phytoene or 134

other pathway intermediates are not detected Similarly increased levels of active PSY 135

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7

protein achieved though overexpression of the ORANGE protein exclusively affect 136

carotenoid amounts in roots but not in leaves (Zhou et al 2015) Leaves from constitutively 137

PSY-overexpressing tomato and tobacco plants are also reported to show only slightly 138

increased carotenoid levels compared to the wild-type control (Fray et al 1995 Busch et al 139

2002) These contrasting responses of leaves versus non-green tissues to elevated pathway 140

flux suggest fundamental differences in the modes of carotenoid formation andor 141

degradation 142

In the present work we identified xanthophyll-derived apocarotenoid glycosides in 143

Arabidopsis leaves which increase upon higher pathway flux This suggests apocarotenoid 144

glycosylation to function as a valve regulating carotenoid steady-state levels in leaves The 145

analysis of Arabidopsis mutants enabled us to conclude on potential precursor carotenoids and 146

to assess the contribution of carotenoid cleavage enzymes on their formation Moreover 147

apocarotenoids but not the identified glycosides were increased in carotenoid-148

hyperaccumulating roots indicating tissue-specifically different modes of carotenoid turnover 149

regulation 150

151

152

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8

RESULTS 153

Carotenoid pathway flux and PSY localization upon increased PSY protein levels 154

In Arabidopsis roots the constitutive AtPSY overexpression results in an up to 100-fold 155

increased carotenoid accumulation In contrast leaves of these lines do not respond and 156

contain carotenoid amounts like the wild type although PSY protein levels are strongly 157

elevated (Maass et al 2009) Increased pathway flux might be compensated by higher 158

turnover of leaf carotenoids Alternatively overexpressed PSY protein might be 159

enzymatically inactive In order to discriminate we determined the phytoene synthesis rates 160

in detached leaves using the phytoene desaturase inhibitor norflurazon (NFZ) assuming that 161

phytoene exhibits an increased resistance towards degradation processes (Simkin et al 2003) 162

We followed an established protocol consisting of a two-hour preincubation in the dark 163

followed by four-hour illumination on NFZ solution (Beisel et al 2011) Wild-type leaves 164

accumulated about 20 mmol phytoene per mol chl a+b (or 01 microg phytoene per mg DW) 165

within four hours exposure to control light (Figure 1) while high light intensity further 166

increased phytoene levels by fivefold reaching 100 mmol phytoene per mol chl a+b 167

NFZ-treated leaves of AtPSY-overexpressing lines illuminated with high light accumulated 168

the same high phytoene levels of 100 mmol phytoene per mol chl a+b However the 169

illumination with control light yielded about 50 mmol phytoene per mol chl a+b thus 25-fold 170

higher levels compared with wild-type leaves This indicates that higher PSY protein amounts 171

in the transgenics do increase the pathway flux although leaf steady-state carotenoid levels 172

remain unaffected At high light intensities phytoene synthesis is apparently limited by other 173

factors such as an exhausted precursor pool 174

The twofold increased phytoene synthesis capacity in AtPSY-overexpressing lines contrasts 175

with the much larger up to 20-fold higher PSY protein levels in leaves (Maass et al 2009) 176

and in chloroplast extracts (Figure 1D) Chloroplast sub-fractionation revealed that PSY was 177

in fact elevated by only about twofold in the membranes the remainder is apparently soluble 178

in the stroma and therefore inactive In vitro measurements of PSY activity confirmed an 179

almost twofold higher PSY activity in the membrane fractions (0157 +- 0062 nmol [14C]-180

phytoene min-1 in At22 versus 0082 +- 002 nmol [14C]-phytoene min-1 in wt a TLC scan is 181

supplied in Supplemental Figure 1) while phytoene synthesis was not detectable in stroma 182

fractions (Figure 1C) 183

184

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Identification of apocarotenoid glycosides in Arabidopsis leaves 185

An increased pathway flux not leading to higher carotenoid levels suggests increased 186

carotenoid turnover This is thought to occur predominantly at the β-carotene level as 187

revealed by 14CO2 pulse-chase labeling and the abundance of oxidation products derived 188

from β-carotene (Beisel et al 2010 Ramel et al 2012a) In leaves of the wild type and 189

AtPSY-overexpressing lines approximately constant β-carotene steady-state levels were 190

confirmed by measuring 14CO2-incorporation into β-carotene (Supplemental Figure 2A) 191

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10

However levels of long-chain β-carotene degradation products remained similarly largely 192

unchanged as revealed by the LC-MS analyses of β-apo-14rsquo- β-apo-12rsquo- β-apo-10rsquo- β-apo-193

8rsquo-carotenal β-apo-13-carotenone and retinal (Supplemental Figure 2B) Moreover 194

carotenoid-derived short-chain volatiles are not found in Arabidopsis leaves (Aharoni et al 195

2003) with the exception of β-cyclocitral and β-ionone which are reported to be generated 196

upon photooxidative stress (Ramel et al 2012b Havaux 2013) We also did not detect these 197

volatiles by GC-MS analysis neither upon headspace sampling nor by the use of various 198

extraction protocols We therefore resorted to analyzing apocarotenoid glycosides (AGs) 199

which are known from a variety of plants especially grapevine where they contribute to the 200

aroma (Winterhalter and Schreier 1995) 201

An extraction protocol for grapevine was adapted which included the enzymatic liberation of 202

the aglycons from aqueous extracts followed by GC-MS analysis (Mathieu et al 2005) This 203

led to the identification of the following four aglycons in Arabidopsis wild-type leaves (the 204

relative peak area percentage is given in parentheses) 3-oxo-α-ionol (apo1 4 ) 3-oxo-α-205

ionone (apo2 3 ) 3-hydroxy-56-epoxy-β-ionone (apo3 80 ) and 6-hydroxy-3-oxo-α-206

ionone (apo4 13 ) Three of these AGs are also identified in grapevine leaf extracts (variety 207

Muumlller-Thurgau) The GC-MS traces representing undigested and glycosidase-treated leaf 208

extracts are shown in Figure 2 Details on the identification of these compounds are shown in 209

Supplemental Figure 3-6 and their characteristics are summarized in Supplemental Table I 210

Xanthophylls appear as the likely precursors for the aglycons identified possible precursor-211

product relationships are shown in Figure 3 The non-hydroxylated apocarotenoid 3-oxo-α-212

ionone (apo2) is probably formed from 3-oxo-α-ionol (apo1) upon oxidation of the hydroxyl 213

group following deglycosylation Direct precursors for 3-oxo-α-ionol (apo1) may be α-ring 214

hydroxylated xanthophylls like lutein and the mono-hydroxylated intermediate α-215

cryptoxanthin Alternatively β-ring hydroxylated xanthophylls like zeaxanthin 216

antheraxanthin and the intermediates β-cryptoxanthin and zeinoxanthin might also serve as 217

precursors requiring β- to ε-ring conversion upon enzymatic liberation this being supported 218

by observations in grapevine (Mathieu et al 2009) 6-Hydroxy-3-oxo-α-ionone (apo4) 219

probably represents a derivative of 3-hydroxy-56-epoxy-β-ionone (apo3) formed upon 220

reduction of the epoxy to a hydroxyl group (Enzell 1985) 3-hydroxy-56-epoxy-β-ionone 221

(apo3) can be formed from epoxy-xanthophylls thus antheraxantin violaxanthin and 222

neoxanthin 223

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11

Interestingly the relative quantification of AGs revealed higher levels in leaves of AtPSY-224

overexpressing lines than in wild-type leaves which correlates with the increased pathway 225

flux determined above (Figure 2 GC-MS chromatograms in Supplemental Figure 7) 226

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12

Hydroxy-xanthophyll derived apocarotenoids (apo1 and apo2) increased about 5-fold and 227

those derived from epoxy-xanthophylls (apo3 and apo4) increased about threefold 228

Considering the reported light stress-induced formation of β-cyclocitral and other carotenoid 229

breakdown products (Ramel et al 2012b) we further examined a possibly increased 230

apocarotenoid glycosylation under high-light stress However both wild-type leaves as well 231

as those from the AtPSY-overexpressing line showed no significant changes in their 232

apocarotenoid aglycon levels after four hours illumination with 1500 micromol photons m-2s-1 233

234

Involvement of enzymatic carotenoid breakdown in apocarotenoid aglycon formation 235

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13

The AGs identified in this work and most of those identified by others in Vitis Boronia and 236

various fruits exhibit a length of 13 carbon atoms (Winterhalter and Skouroumounis 1997 237

Mendes-Pinto 2009 Cooper et al 2011) AGs with various chain lengths would be expected 238

in case of non-enzymatic carotenoid cleavage In order to determine the contribution of 239

enzymatic cleavage we took advantage of Arabidopsis lines deficient in the carotenoid 240

cleavage enzymes CCD1 and CCD4 (Gonzalez-Jorge et al 2013) which exhibit a broad 241

substrate specificity (Bruno et al 2015 Auldridge et al 2006 Vogel et al 2008) The 242

carotenoid levels in leaves from four week old plants of ccd4-1 and a ccd1-1 ccd4-1 double 243

mutant were similar to the wild type (see Table I) However leaves from both the ccd4-1 and 244

the ccd1-1 ccd4-1 mutant showed strongly reduced levels of all AGs with major reductions in 245

3-hydroxy-56-epoxy-β-ionone (apo3) 6-hydroxy-3-oxo-α-ionone (apo4) and 3-oxo-α-ionol 246

(apo1 Figure 4 see Supplemental Figure 8 for GC-MS traces) With 6-hydroxy-3-oxo-α-247

ionone (apo4) as an exception there was no significant difference in AG levels comparing the 248

single and double mutant lines (p gt 025) The residual presence of apocarotenoid aglycons in 249

ccd1-1 ccd4-1 leaves thus suggests additional mechanisms yielding the same cleavage 250

products These results indicate a predominantly enzymatic origin of AGs with a major 251

contribution of CCD4 while CCD1 plays a minor role 252

Given this role of CCD4 and the constant carotenoid levels in leaves of AtPSY-overexpressing 253

lines we challenged flux compensation by crossing AtPSY-overexpressing lines with the 254

ccd4-1 and the ccd1-1 ccd4-1 mutant lines While seedlings heterozygous for the ccd4-1 255

mutation grew indistinguishable from wild-type plants individuals homozygous for ccd4-1 256

developed light-green cotyledons which quickly bleached and died In one weeks old 257

homozygous seedlings carotenoid and chlorophyll contents were reduced by about 40 258

compared to the wild type and pathway intermediates were not detected (Supplemental Figure 259

9) Apparently formation of xanthophyll breakdown products not formed by cleavage through 260

CCD4 can be tolerated only at physiological pathway fluxes However a further increase 261

through higher PSY abundance is lethal presumably due to the excessive presence of 262

apocarotenoids generated by other mechanisms 263

264

Identification of xanthophyll precursors for apocarotenoid glycosides 265

We took advantage of the altered leaf xanthophyll patterns found in two Arabidopsis 266

cytochrome P450-type carotene hydroxylase mutants CYP97C1 catalyzes the hydroxylation 267

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14

of the α-ionone ring present in α-carotene The respective lut1 mutant is therefore 268

characterized by the absence of lutein and the accumulation of the β-ring mono-hydroxylated 269

α-carotene derivative zeinoxanthin (Kim et al 2009 Table I) The mutant leaves showed 270

about threefold increased levels of 3-oxo-α-ionol (apo1) while other AGs remained 271

unchanged and no additional AGs were detected (Figure 4B see Supplemental Figure 10 for 272

GC-MS traces) This excludes lutein as precursor for AGs identified In contrast the 273

increased levels of β-ring hydroxylated xanthophylls in lut1 leaves suggest zeaxanthin 274

antheraxanthin and zeinoxanthin as precursor explaining enhanced levels of 3-oxo-α-ionol 275

(apo1) 276

The second cytochrome P450-type hydroxylase CYP97A3 catalyzes the hydroxylation of β-277

ring xanthophylls and prefers α-carotene as substrate but also shows some β-carotene 278

hydroxylation activity Its absence defines the lut5 phenotype which accumulates increased 279

levels of α-carotene accompanied by an almost equivalent reduction of β-carotene In 280

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15

addition epoxy-xanthophylls like violaxanthin and neoxanthin are reduced (Kim and 281

DellaPenna 2006) In agreement with the suggested origin of 3-hydroxy-56-epoxy-β-ionone 282

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) from epoxy-xanthophylls (Figure 3) leaves of 283

lut5 had strongly reduced levels of these two AGs while those with a suggested origin from 284

hydroxylated xanthophylls decreased only slightly Furthermore both epoxy-xanthophyll 285

derived apocarotenoids decreased proportionally which is in favor of the secondary formation 286

of 6-hydroxy-3-oxo-α-ionone (apo4) from 3-hydroxy-56-epoxy-β-ionone (apo3) 287

288

Analysis of apocarotenoids in roots 289

AGs were also analyzed in roots which accumulate high amounts of β-carotene in response to 290

AtPSY overexpression reflecting low activity of carotene hydroxylases (Maass et al 2009) 291

Although the aglycons of several well-known glycoconjugated precursors were released such 292

as coniferyl alcohol (from coniferin Lewis and Yamamoto 1990) and indol-3-acetonitril 293

(from brassicin Normanly and Bartel 1999 see Supplemental Figure 11) we could not 294

detect any AGs neither in wild-type nor in AtPSY-overexpressing roots Given the xanthophyll 295

origin of the AGs identified this may be attributed to the much lower xanthophyll abundance 296

in roots than in leaves This is contrasted by the presence of long-chain free β-apocarotenals 297

in roots which were up to 50-fold higher in AtPSY-overexpressing lines compared to the wild 298

type (Figure 5) As already mentioned above these were not increased in leaves in response to 299

increased pathway fluxes indicating different mechanisms operating in both tissues 300

301

302

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16

DISCUSSION 303

Compensatory responses towards increased carotenoid flux in Arabidopsis leaves 304

The carotenoid pathway capacity in Arabidopsis leaves is increased in response to the 305

overexpression of the rate-limiting enzyme PSY This is not at all evident from carotenoid 306

levels but can be shown in derived non-green cells like calli and roots (Maass et al 2009) 307

Alternatively phytoene accumulation upon NFZ inhibition can be used as a readout in leaves 308

because most carotenoid turnover apparently and conceivably happens downstream of 309

phytoene This revealed a doubling of phytoene amounts in AtPSY-overexpressing lines 310

compared to wild-type leaves within four hours illumination with control light intensities 311

(Figure 1) and is further confirmed by in vitro measurements of PSY enzyme activity with 312

isolated plastid membranes Using these data it can be estimated that wild-type leaf carotenoid 313

homeostasis entails the de novo synthesis of about 14 of the carotenoids present (or 04 microg 314

mg DW-1) during a 16 hours light period which is enhanced to 28 in AtPSY-overexpressing 315

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17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

20

40

60

80

100

88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

1 2

3

4

98

20

40

60

80

100

20

40

60

80

100

Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

0

10

20

30

40

50

60

70

80

90

100

88 90 92 94 96 98 100 102Time (min)

0

10

20

30

40

50

60

70

80

90

100

A undigested

B digested1

2

D

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

13703

18006

12405

9103

1030677046503 15213

18609

C F

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

15507

13013

1281477046404 1010819115

E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 4: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

4

ABSTRACT 49

Attaining defined steady-state carotenoid levels requires balancing of the rates governing their 50

synthesis and metabolism Phytoene formation mediated by phytoene synthase (PSY) is rate-51

limiting in the biosynthesis of carotenoids while carotenoid catabolism involves a multitude 52

of non-enzymatic and enzymatic processes We investigated carotenoid and apocarotenoid 53

formation in Arabidopsis in response to enhanced pathway flux upon PSY overexpression 54

This resulted in a dramatic accumulation of mainly β-carotene in roots and non-green calli 55

while carotenoids remained unchanged in leaves We show that in chloroplasts surplus PSY 56

was partially soluble localized in the stroma and therefore inactive while the membrane-57

bound portion mediated a doubling of phytoene synthesis rates Increased pathway flux was 58

not compensated by enhanced generation of long-chain apocarotenals but resulted in higher 59

levels of C13-apocarotenoid glycosides (AGs) Using mutant lines deficient in carotenoid 60

cleavage dioxygenases (CCD) we identified CCD4 as being mainly responsible for the 61

majority of AGs formed Moreover changed AG patterns in the carotene hydroxylase mutants 62

lut1 and lut5 exhibiting altered leaf carotenoids allowed to define specific xanthophyll species 63

as precursors for the apocarotenoid aglycons detected In contrast to leaves carotenoid 64

hyperaccumulating roots contained higher levels of β-carotene derived apocarotenals while 65

AGs were absent These contrasting responses are associated with tissue-specific capacities to 66

synthesize xanthophylls which thus determine the modes of carotenoid accumulation and 67

apocarotenoid formation 68

69

70

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INTRODUCTION 71

In plants the synthesis of carotenoids is plastid-localized with the plastid type determining 72

their function (Ruiz-Sola and Rodriacuteguez-Concepcioacuten 2011 Nisar et al 2015) In non-73

photosynthetic chromoplasts carotenoids and their volatile derivatives attract pollinating 74

insects or zoochoric animals Here carotenoids are sequestered in diverse sub-organellar 75

structures which can be tubulous globulous membranous or crystalline (Sitte et al 1980 76

Egea et al 2010) In chloroplasts carotenoids are present in light-harvesting complex 77

proteins and in photosynthetic reaction centres They extend the light spectrum used for 78

photosynthetic energy transformation and act photoprotectively due to their ability to quench 79

excitation energy from singlet or triplet state chlorophylls thereby decreasing the risk that 80

singlet oxygen forms (Demmig-Adams and Adams 2002 Niyogi 1999) Furthermore the 81

regulated epoxidation and de-epoxidation of zeaxanthin in the xanthophyll cycle contributes 82

to the non-photochemical quenching of energy (Niyogi 1999 Ballottari et al 2014) In 83

contrast to these processes which maintain carotenoid integrity carotenoids are also capable 84

to chemically quench singlet oxygen by their own oxidation which is accompanied by the 85

release of various carotenoid degradation products (Ramel et al 2012a Ramel et al 2012c) 86

The various functions of carotenoids require their dynamic qualitative and quantitative tuning 87

in response to environmental conditions to attain and maintain adequate steady-state 88

concentrations This includes both the regulation of their synthesis as well as the formation 89

release or disposal of their breakdown products The synthesis of carotenoids is initiated by 90

the condensation of two molecules geranylgeranyl diphosphate to form phytoene catalyzed 91

by the enzyme phytoene synthase (PSY) which is considered as the rate-limiting enzyme 92

(von Lintig et al 1997 Li et al 2008 Rodriacuteguez-Villaloacuten et al 2009 Welsch et al 2010 93

Zhou et al 2015) In plants two desaturases phytoene desaturase and ζ-carotene desaturase 94

and two carotene cis-trans-isomerases convert the colorless phytoene into the red-colored all-95

trans-lycopene (Isaacson et al 2002 Park et al 2002 Chen et al 2010 Yu et al 2011) 96

Two lycopene cyclases introduce either β- or ε-ionone rings yielding in α-(εβ-)-carotene and 97

β-(ββ)-carotene In Arabidopsis four enzymes hydroxylate carotenes with partially 98

overlapping substrate specificity (Kim et al 2009) Two non-heme iron-dependent 99

hydroxylases (BCH1 and BCH2) convert β-carotene into zeaxanthin The second set of 100

hydrolxyases CYP97A3 and CYP97C1 prefer α-carotene belong to the cytochrome P450 101

enzyme family and produce zeinoxanthin and lutein respectively Absence of each 102

cytochrome P450 hydroxylase constitutes a distinct phenotype - named lut5 for CYP97A3 103

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6

and lut1 for CYP97C1 deficiency - characterized by altered pigment compositions and the 104

accumulation of monohydroxylated intermediates while deficiency in BCH1 and BCH2 does 105

not affect the pigment composition 106

In green tissues photooxidative destruction seemingly predominates and consumes 107

carotenoids (Simkin et al 2003) Moreover 14CO2 pulse-chase experiments with Arabidopsis 108

leaves identified α- and β-carotene as the main targets for photooxidation while xanthophylls 109

were less affected (Beisel et al 2010) Oxidation assays with β-carotene showed epoxy- and 110

peroxy-derivatives as the main primary products which however undergo further reactions 111

yielding more stable degradation products which are in part the same apocarotenalsones as 112

those being produced enzymatically (Ramel et al 2012a Ramel et al 2012c) 113

In Arabidopsis genes coding for carotenoid cleaving enzymes (carotenoid cleavage 114

dioxygenases CCDs) form a small gene family comprising nine members five of which are 115

attributed to the synthesis of ABA (nine-cis-epoxycarotenoid cleavage dioxygenases NCEDs 116

AtNCED2356 and 9 Tan et al 2003 Iuchi et al 2001) while two are committed to 117

strigolactone biosynthesis (CCD7MAX3 and CCD8MAX4 Alder et al 2012 Bruno et al 118

2014) Orthologs of CCD1 are involved in the generation of volatile apocarotenoids 119

contributing to flower scents and aroma production (eg saffron Rubio et al 2008 120

Frusciante et al 2014 tomato Schwartz et al 2004) while CCD4 enzymes are involved in 121

citrus peel and chrysanthemum petal coloration (Rodrigo et al 2013) Recent analysis of 122

Arabidopsis mutants revealed a major function of CCD4 in regulating seed carotenoid content 123

with only a minor contribution of CCD1 (Gonzalez-Jorge et al 2013) Moreover CCD4 124

activity was required for the synthesis of an apocarotenoid-derived signalling molecule 125

involved in leaf development and retrograde gene expression (Avendantildeo-Vaacutezquez et al 126

2014) 127

Elevated carotenoid pathway flux caused by PSY overexpression increases carotenoid 128

accumulation in various non-green tissues such as tomato fruits canola seeds cassava roots 129

and rice endosperm (Shewmaker et al 1999 Ye et al 2000 Fraser et al 2002 Welsch et 130

al 2010) Similarly the constitutive overexpression of PSY in Arabidopsis results in 131

dramatically increased carotenoid amounts accumulating as crystals in non-green tissues such 132

as roots and callus yielding β-carotene as the main product (Maass et al 2009) However 133

leaves of the very same plants do not show altered pigment composition and phytoene or 134

other pathway intermediates are not detected Similarly increased levels of active PSY 135

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protein achieved though overexpression of the ORANGE protein exclusively affect 136

carotenoid amounts in roots but not in leaves (Zhou et al 2015) Leaves from constitutively 137

PSY-overexpressing tomato and tobacco plants are also reported to show only slightly 138

increased carotenoid levels compared to the wild-type control (Fray et al 1995 Busch et al 139

2002) These contrasting responses of leaves versus non-green tissues to elevated pathway 140

flux suggest fundamental differences in the modes of carotenoid formation andor 141

degradation 142

In the present work we identified xanthophyll-derived apocarotenoid glycosides in 143

Arabidopsis leaves which increase upon higher pathway flux This suggests apocarotenoid 144

glycosylation to function as a valve regulating carotenoid steady-state levels in leaves The 145

analysis of Arabidopsis mutants enabled us to conclude on potential precursor carotenoids and 146

to assess the contribution of carotenoid cleavage enzymes on their formation Moreover 147

apocarotenoids but not the identified glycosides were increased in carotenoid-148

hyperaccumulating roots indicating tissue-specifically different modes of carotenoid turnover 149

regulation 150

151

152

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8

RESULTS 153

Carotenoid pathway flux and PSY localization upon increased PSY protein levels 154

In Arabidopsis roots the constitutive AtPSY overexpression results in an up to 100-fold 155

increased carotenoid accumulation In contrast leaves of these lines do not respond and 156

contain carotenoid amounts like the wild type although PSY protein levels are strongly 157

elevated (Maass et al 2009) Increased pathway flux might be compensated by higher 158

turnover of leaf carotenoids Alternatively overexpressed PSY protein might be 159

enzymatically inactive In order to discriminate we determined the phytoene synthesis rates 160

in detached leaves using the phytoene desaturase inhibitor norflurazon (NFZ) assuming that 161

phytoene exhibits an increased resistance towards degradation processes (Simkin et al 2003) 162

We followed an established protocol consisting of a two-hour preincubation in the dark 163

followed by four-hour illumination on NFZ solution (Beisel et al 2011) Wild-type leaves 164

accumulated about 20 mmol phytoene per mol chl a+b (or 01 microg phytoene per mg DW) 165

within four hours exposure to control light (Figure 1) while high light intensity further 166

increased phytoene levels by fivefold reaching 100 mmol phytoene per mol chl a+b 167

NFZ-treated leaves of AtPSY-overexpressing lines illuminated with high light accumulated 168

the same high phytoene levels of 100 mmol phytoene per mol chl a+b However the 169

illumination with control light yielded about 50 mmol phytoene per mol chl a+b thus 25-fold 170

higher levels compared with wild-type leaves This indicates that higher PSY protein amounts 171

in the transgenics do increase the pathway flux although leaf steady-state carotenoid levels 172

remain unaffected At high light intensities phytoene synthesis is apparently limited by other 173

factors such as an exhausted precursor pool 174

The twofold increased phytoene synthesis capacity in AtPSY-overexpressing lines contrasts 175

with the much larger up to 20-fold higher PSY protein levels in leaves (Maass et al 2009) 176

and in chloroplast extracts (Figure 1D) Chloroplast sub-fractionation revealed that PSY was 177

in fact elevated by only about twofold in the membranes the remainder is apparently soluble 178

in the stroma and therefore inactive In vitro measurements of PSY activity confirmed an 179

almost twofold higher PSY activity in the membrane fractions (0157 +- 0062 nmol [14C]-180

phytoene min-1 in At22 versus 0082 +- 002 nmol [14C]-phytoene min-1 in wt a TLC scan is 181

supplied in Supplemental Figure 1) while phytoene synthesis was not detectable in stroma 182

fractions (Figure 1C) 183

184

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9

Identification of apocarotenoid glycosides in Arabidopsis leaves 185

An increased pathway flux not leading to higher carotenoid levels suggests increased 186

carotenoid turnover This is thought to occur predominantly at the β-carotene level as 187

revealed by 14CO2 pulse-chase labeling and the abundance of oxidation products derived 188

from β-carotene (Beisel et al 2010 Ramel et al 2012a) In leaves of the wild type and 189

AtPSY-overexpressing lines approximately constant β-carotene steady-state levels were 190

confirmed by measuring 14CO2-incorporation into β-carotene (Supplemental Figure 2A) 191

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10

However levels of long-chain β-carotene degradation products remained similarly largely 192

unchanged as revealed by the LC-MS analyses of β-apo-14rsquo- β-apo-12rsquo- β-apo-10rsquo- β-apo-193

8rsquo-carotenal β-apo-13-carotenone and retinal (Supplemental Figure 2B) Moreover 194

carotenoid-derived short-chain volatiles are not found in Arabidopsis leaves (Aharoni et al 195

2003) with the exception of β-cyclocitral and β-ionone which are reported to be generated 196

upon photooxidative stress (Ramel et al 2012b Havaux 2013) We also did not detect these 197

volatiles by GC-MS analysis neither upon headspace sampling nor by the use of various 198

extraction protocols We therefore resorted to analyzing apocarotenoid glycosides (AGs) 199

which are known from a variety of plants especially grapevine where they contribute to the 200

aroma (Winterhalter and Schreier 1995) 201

An extraction protocol for grapevine was adapted which included the enzymatic liberation of 202

the aglycons from aqueous extracts followed by GC-MS analysis (Mathieu et al 2005) This 203

led to the identification of the following four aglycons in Arabidopsis wild-type leaves (the 204

relative peak area percentage is given in parentheses) 3-oxo-α-ionol (apo1 4 ) 3-oxo-α-205

ionone (apo2 3 ) 3-hydroxy-56-epoxy-β-ionone (apo3 80 ) and 6-hydroxy-3-oxo-α-206

ionone (apo4 13 ) Three of these AGs are also identified in grapevine leaf extracts (variety 207

Muumlller-Thurgau) The GC-MS traces representing undigested and glycosidase-treated leaf 208

extracts are shown in Figure 2 Details on the identification of these compounds are shown in 209

Supplemental Figure 3-6 and their characteristics are summarized in Supplemental Table I 210

Xanthophylls appear as the likely precursors for the aglycons identified possible precursor-211

product relationships are shown in Figure 3 The non-hydroxylated apocarotenoid 3-oxo-α-212

ionone (apo2) is probably formed from 3-oxo-α-ionol (apo1) upon oxidation of the hydroxyl 213

group following deglycosylation Direct precursors for 3-oxo-α-ionol (apo1) may be α-ring 214

hydroxylated xanthophylls like lutein and the mono-hydroxylated intermediate α-215

cryptoxanthin Alternatively β-ring hydroxylated xanthophylls like zeaxanthin 216

antheraxanthin and the intermediates β-cryptoxanthin and zeinoxanthin might also serve as 217

precursors requiring β- to ε-ring conversion upon enzymatic liberation this being supported 218

by observations in grapevine (Mathieu et al 2009) 6-Hydroxy-3-oxo-α-ionone (apo4) 219

probably represents a derivative of 3-hydroxy-56-epoxy-β-ionone (apo3) formed upon 220

reduction of the epoxy to a hydroxyl group (Enzell 1985) 3-hydroxy-56-epoxy-β-ionone 221

(apo3) can be formed from epoxy-xanthophylls thus antheraxantin violaxanthin and 222

neoxanthin 223

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11

Interestingly the relative quantification of AGs revealed higher levels in leaves of AtPSY-224

overexpressing lines than in wild-type leaves which correlates with the increased pathway 225

flux determined above (Figure 2 GC-MS chromatograms in Supplemental Figure 7) 226

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12

Hydroxy-xanthophyll derived apocarotenoids (apo1 and apo2) increased about 5-fold and 227

those derived from epoxy-xanthophylls (apo3 and apo4) increased about threefold 228

Considering the reported light stress-induced formation of β-cyclocitral and other carotenoid 229

breakdown products (Ramel et al 2012b) we further examined a possibly increased 230

apocarotenoid glycosylation under high-light stress However both wild-type leaves as well 231

as those from the AtPSY-overexpressing line showed no significant changes in their 232

apocarotenoid aglycon levels after four hours illumination with 1500 micromol photons m-2s-1 233

234

Involvement of enzymatic carotenoid breakdown in apocarotenoid aglycon formation 235

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13

The AGs identified in this work and most of those identified by others in Vitis Boronia and 236

various fruits exhibit a length of 13 carbon atoms (Winterhalter and Skouroumounis 1997 237

Mendes-Pinto 2009 Cooper et al 2011) AGs with various chain lengths would be expected 238

in case of non-enzymatic carotenoid cleavage In order to determine the contribution of 239

enzymatic cleavage we took advantage of Arabidopsis lines deficient in the carotenoid 240

cleavage enzymes CCD1 and CCD4 (Gonzalez-Jorge et al 2013) which exhibit a broad 241

substrate specificity (Bruno et al 2015 Auldridge et al 2006 Vogel et al 2008) The 242

carotenoid levels in leaves from four week old plants of ccd4-1 and a ccd1-1 ccd4-1 double 243

mutant were similar to the wild type (see Table I) However leaves from both the ccd4-1 and 244

the ccd1-1 ccd4-1 mutant showed strongly reduced levels of all AGs with major reductions in 245

3-hydroxy-56-epoxy-β-ionone (apo3) 6-hydroxy-3-oxo-α-ionone (apo4) and 3-oxo-α-ionol 246

(apo1 Figure 4 see Supplemental Figure 8 for GC-MS traces) With 6-hydroxy-3-oxo-α-247

ionone (apo4) as an exception there was no significant difference in AG levels comparing the 248

single and double mutant lines (p gt 025) The residual presence of apocarotenoid aglycons in 249

ccd1-1 ccd4-1 leaves thus suggests additional mechanisms yielding the same cleavage 250

products These results indicate a predominantly enzymatic origin of AGs with a major 251

contribution of CCD4 while CCD1 plays a minor role 252

Given this role of CCD4 and the constant carotenoid levels in leaves of AtPSY-overexpressing 253

lines we challenged flux compensation by crossing AtPSY-overexpressing lines with the 254

ccd4-1 and the ccd1-1 ccd4-1 mutant lines While seedlings heterozygous for the ccd4-1 255

mutation grew indistinguishable from wild-type plants individuals homozygous for ccd4-1 256

developed light-green cotyledons which quickly bleached and died In one weeks old 257

homozygous seedlings carotenoid and chlorophyll contents were reduced by about 40 258

compared to the wild type and pathway intermediates were not detected (Supplemental Figure 259

9) Apparently formation of xanthophyll breakdown products not formed by cleavage through 260

CCD4 can be tolerated only at physiological pathway fluxes However a further increase 261

through higher PSY abundance is lethal presumably due to the excessive presence of 262

apocarotenoids generated by other mechanisms 263

264

Identification of xanthophyll precursors for apocarotenoid glycosides 265

We took advantage of the altered leaf xanthophyll patterns found in two Arabidopsis 266

cytochrome P450-type carotene hydroxylase mutants CYP97C1 catalyzes the hydroxylation 267

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14

of the α-ionone ring present in α-carotene The respective lut1 mutant is therefore 268

characterized by the absence of lutein and the accumulation of the β-ring mono-hydroxylated 269

α-carotene derivative zeinoxanthin (Kim et al 2009 Table I) The mutant leaves showed 270

about threefold increased levels of 3-oxo-α-ionol (apo1) while other AGs remained 271

unchanged and no additional AGs were detected (Figure 4B see Supplemental Figure 10 for 272

GC-MS traces) This excludes lutein as precursor for AGs identified In contrast the 273

increased levels of β-ring hydroxylated xanthophylls in lut1 leaves suggest zeaxanthin 274

antheraxanthin and zeinoxanthin as precursor explaining enhanced levels of 3-oxo-α-ionol 275

(apo1) 276

The second cytochrome P450-type hydroxylase CYP97A3 catalyzes the hydroxylation of β-277

ring xanthophylls and prefers α-carotene as substrate but also shows some β-carotene 278

hydroxylation activity Its absence defines the lut5 phenotype which accumulates increased 279

levels of α-carotene accompanied by an almost equivalent reduction of β-carotene In 280

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15

addition epoxy-xanthophylls like violaxanthin and neoxanthin are reduced (Kim and 281

DellaPenna 2006) In agreement with the suggested origin of 3-hydroxy-56-epoxy-β-ionone 282

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) from epoxy-xanthophylls (Figure 3) leaves of 283

lut5 had strongly reduced levels of these two AGs while those with a suggested origin from 284

hydroxylated xanthophylls decreased only slightly Furthermore both epoxy-xanthophyll 285

derived apocarotenoids decreased proportionally which is in favor of the secondary formation 286

of 6-hydroxy-3-oxo-α-ionone (apo4) from 3-hydroxy-56-epoxy-β-ionone (apo3) 287

288

Analysis of apocarotenoids in roots 289

AGs were also analyzed in roots which accumulate high amounts of β-carotene in response to 290

AtPSY overexpression reflecting low activity of carotene hydroxylases (Maass et al 2009) 291

Although the aglycons of several well-known glycoconjugated precursors were released such 292

as coniferyl alcohol (from coniferin Lewis and Yamamoto 1990) and indol-3-acetonitril 293

(from brassicin Normanly and Bartel 1999 see Supplemental Figure 11) we could not 294

detect any AGs neither in wild-type nor in AtPSY-overexpressing roots Given the xanthophyll 295

origin of the AGs identified this may be attributed to the much lower xanthophyll abundance 296

in roots than in leaves This is contrasted by the presence of long-chain free β-apocarotenals 297

in roots which were up to 50-fold higher in AtPSY-overexpressing lines compared to the wild 298

type (Figure 5) As already mentioned above these were not increased in leaves in response to 299

increased pathway fluxes indicating different mechanisms operating in both tissues 300

301

302

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16

DISCUSSION 303

Compensatory responses towards increased carotenoid flux in Arabidopsis leaves 304

The carotenoid pathway capacity in Arabidopsis leaves is increased in response to the 305

overexpression of the rate-limiting enzyme PSY This is not at all evident from carotenoid 306

levels but can be shown in derived non-green cells like calli and roots (Maass et al 2009) 307

Alternatively phytoene accumulation upon NFZ inhibition can be used as a readout in leaves 308

because most carotenoid turnover apparently and conceivably happens downstream of 309

phytoene This revealed a doubling of phytoene amounts in AtPSY-overexpressing lines 310

compared to wild-type leaves within four hours illumination with control light intensities 311

(Figure 1) and is further confirmed by in vitro measurements of PSY enzyme activity with 312

isolated plastid membranes Using these data it can be estimated that wild-type leaf carotenoid 313

homeostasis entails the de novo synthesis of about 14 of the carotenoids present (or 04 microg 314

mg DW-1) during a 16 hours light period which is enhanced to 28 in AtPSY-overexpressing 315

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17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

20

40

60

80

100

88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

1 2

3

4

98

20

40

60

80

100

20

40

60

80

100

Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

0

10

20

30

40

50

60

70

80

90

100

88 90 92 94 96 98 100 102Time (min)

0

10

20

30

40

50

60

70

80

90

100

A undigested

B digested1

2

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 5: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

5

INTRODUCTION 71

In plants the synthesis of carotenoids is plastid-localized with the plastid type determining 72

their function (Ruiz-Sola and Rodriacuteguez-Concepcioacuten 2011 Nisar et al 2015) In non-73

photosynthetic chromoplasts carotenoids and their volatile derivatives attract pollinating 74

insects or zoochoric animals Here carotenoids are sequestered in diverse sub-organellar 75

structures which can be tubulous globulous membranous or crystalline (Sitte et al 1980 76

Egea et al 2010) In chloroplasts carotenoids are present in light-harvesting complex 77

proteins and in photosynthetic reaction centres They extend the light spectrum used for 78

photosynthetic energy transformation and act photoprotectively due to their ability to quench 79

excitation energy from singlet or triplet state chlorophylls thereby decreasing the risk that 80

singlet oxygen forms (Demmig-Adams and Adams 2002 Niyogi 1999) Furthermore the 81

regulated epoxidation and de-epoxidation of zeaxanthin in the xanthophyll cycle contributes 82

to the non-photochemical quenching of energy (Niyogi 1999 Ballottari et al 2014) In 83

contrast to these processes which maintain carotenoid integrity carotenoids are also capable 84

to chemically quench singlet oxygen by their own oxidation which is accompanied by the 85

release of various carotenoid degradation products (Ramel et al 2012a Ramel et al 2012c) 86

The various functions of carotenoids require their dynamic qualitative and quantitative tuning 87

in response to environmental conditions to attain and maintain adequate steady-state 88

concentrations This includes both the regulation of their synthesis as well as the formation 89

release or disposal of their breakdown products The synthesis of carotenoids is initiated by 90

the condensation of two molecules geranylgeranyl diphosphate to form phytoene catalyzed 91

by the enzyme phytoene synthase (PSY) which is considered as the rate-limiting enzyme 92

(von Lintig et al 1997 Li et al 2008 Rodriacuteguez-Villaloacuten et al 2009 Welsch et al 2010 93

Zhou et al 2015) In plants two desaturases phytoene desaturase and ζ-carotene desaturase 94

and two carotene cis-trans-isomerases convert the colorless phytoene into the red-colored all-95

trans-lycopene (Isaacson et al 2002 Park et al 2002 Chen et al 2010 Yu et al 2011) 96

Two lycopene cyclases introduce either β- or ε-ionone rings yielding in α-(εβ-)-carotene and 97

β-(ββ)-carotene In Arabidopsis four enzymes hydroxylate carotenes with partially 98

overlapping substrate specificity (Kim et al 2009) Two non-heme iron-dependent 99

hydroxylases (BCH1 and BCH2) convert β-carotene into zeaxanthin The second set of 100

hydrolxyases CYP97A3 and CYP97C1 prefer α-carotene belong to the cytochrome P450 101

enzyme family and produce zeinoxanthin and lutein respectively Absence of each 102

cytochrome P450 hydroxylase constitutes a distinct phenotype - named lut5 for CYP97A3 103

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6

and lut1 for CYP97C1 deficiency - characterized by altered pigment compositions and the 104

accumulation of monohydroxylated intermediates while deficiency in BCH1 and BCH2 does 105

not affect the pigment composition 106

In green tissues photooxidative destruction seemingly predominates and consumes 107

carotenoids (Simkin et al 2003) Moreover 14CO2 pulse-chase experiments with Arabidopsis 108

leaves identified α- and β-carotene as the main targets for photooxidation while xanthophylls 109

were less affected (Beisel et al 2010) Oxidation assays with β-carotene showed epoxy- and 110

peroxy-derivatives as the main primary products which however undergo further reactions 111

yielding more stable degradation products which are in part the same apocarotenalsones as 112

those being produced enzymatically (Ramel et al 2012a Ramel et al 2012c) 113

In Arabidopsis genes coding for carotenoid cleaving enzymes (carotenoid cleavage 114

dioxygenases CCDs) form a small gene family comprising nine members five of which are 115

attributed to the synthesis of ABA (nine-cis-epoxycarotenoid cleavage dioxygenases NCEDs 116

AtNCED2356 and 9 Tan et al 2003 Iuchi et al 2001) while two are committed to 117

strigolactone biosynthesis (CCD7MAX3 and CCD8MAX4 Alder et al 2012 Bruno et al 118

2014) Orthologs of CCD1 are involved in the generation of volatile apocarotenoids 119

contributing to flower scents and aroma production (eg saffron Rubio et al 2008 120

Frusciante et al 2014 tomato Schwartz et al 2004) while CCD4 enzymes are involved in 121

citrus peel and chrysanthemum petal coloration (Rodrigo et al 2013) Recent analysis of 122

Arabidopsis mutants revealed a major function of CCD4 in regulating seed carotenoid content 123

with only a minor contribution of CCD1 (Gonzalez-Jorge et al 2013) Moreover CCD4 124

activity was required for the synthesis of an apocarotenoid-derived signalling molecule 125

involved in leaf development and retrograde gene expression (Avendantildeo-Vaacutezquez et al 126

2014) 127

Elevated carotenoid pathway flux caused by PSY overexpression increases carotenoid 128

accumulation in various non-green tissues such as tomato fruits canola seeds cassava roots 129

and rice endosperm (Shewmaker et al 1999 Ye et al 2000 Fraser et al 2002 Welsch et 130

al 2010) Similarly the constitutive overexpression of PSY in Arabidopsis results in 131

dramatically increased carotenoid amounts accumulating as crystals in non-green tissues such 132

as roots and callus yielding β-carotene as the main product (Maass et al 2009) However 133

leaves of the very same plants do not show altered pigment composition and phytoene or 134

other pathway intermediates are not detected Similarly increased levels of active PSY 135

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7

protein achieved though overexpression of the ORANGE protein exclusively affect 136

carotenoid amounts in roots but not in leaves (Zhou et al 2015) Leaves from constitutively 137

PSY-overexpressing tomato and tobacco plants are also reported to show only slightly 138

increased carotenoid levels compared to the wild-type control (Fray et al 1995 Busch et al 139

2002) These contrasting responses of leaves versus non-green tissues to elevated pathway 140

flux suggest fundamental differences in the modes of carotenoid formation andor 141

degradation 142

In the present work we identified xanthophyll-derived apocarotenoid glycosides in 143

Arabidopsis leaves which increase upon higher pathway flux This suggests apocarotenoid 144

glycosylation to function as a valve regulating carotenoid steady-state levels in leaves The 145

analysis of Arabidopsis mutants enabled us to conclude on potential precursor carotenoids and 146

to assess the contribution of carotenoid cleavage enzymes on their formation Moreover 147

apocarotenoids but not the identified glycosides were increased in carotenoid-148

hyperaccumulating roots indicating tissue-specifically different modes of carotenoid turnover 149

regulation 150

151

152

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8

RESULTS 153

Carotenoid pathway flux and PSY localization upon increased PSY protein levels 154

In Arabidopsis roots the constitutive AtPSY overexpression results in an up to 100-fold 155

increased carotenoid accumulation In contrast leaves of these lines do not respond and 156

contain carotenoid amounts like the wild type although PSY protein levels are strongly 157

elevated (Maass et al 2009) Increased pathway flux might be compensated by higher 158

turnover of leaf carotenoids Alternatively overexpressed PSY protein might be 159

enzymatically inactive In order to discriminate we determined the phytoene synthesis rates 160

in detached leaves using the phytoene desaturase inhibitor norflurazon (NFZ) assuming that 161

phytoene exhibits an increased resistance towards degradation processes (Simkin et al 2003) 162

We followed an established protocol consisting of a two-hour preincubation in the dark 163

followed by four-hour illumination on NFZ solution (Beisel et al 2011) Wild-type leaves 164

accumulated about 20 mmol phytoene per mol chl a+b (or 01 microg phytoene per mg DW) 165

within four hours exposure to control light (Figure 1) while high light intensity further 166

increased phytoene levels by fivefold reaching 100 mmol phytoene per mol chl a+b 167

NFZ-treated leaves of AtPSY-overexpressing lines illuminated with high light accumulated 168

the same high phytoene levels of 100 mmol phytoene per mol chl a+b However the 169

illumination with control light yielded about 50 mmol phytoene per mol chl a+b thus 25-fold 170

higher levels compared with wild-type leaves This indicates that higher PSY protein amounts 171

in the transgenics do increase the pathway flux although leaf steady-state carotenoid levels 172

remain unaffected At high light intensities phytoene synthesis is apparently limited by other 173

factors such as an exhausted precursor pool 174

The twofold increased phytoene synthesis capacity in AtPSY-overexpressing lines contrasts 175

with the much larger up to 20-fold higher PSY protein levels in leaves (Maass et al 2009) 176

and in chloroplast extracts (Figure 1D) Chloroplast sub-fractionation revealed that PSY was 177

in fact elevated by only about twofold in the membranes the remainder is apparently soluble 178

in the stroma and therefore inactive In vitro measurements of PSY activity confirmed an 179

almost twofold higher PSY activity in the membrane fractions (0157 +- 0062 nmol [14C]-180

phytoene min-1 in At22 versus 0082 +- 002 nmol [14C]-phytoene min-1 in wt a TLC scan is 181

supplied in Supplemental Figure 1) while phytoene synthesis was not detectable in stroma 182

fractions (Figure 1C) 183

184

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9

Identification of apocarotenoid glycosides in Arabidopsis leaves 185

An increased pathway flux not leading to higher carotenoid levels suggests increased 186

carotenoid turnover This is thought to occur predominantly at the β-carotene level as 187

revealed by 14CO2 pulse-chase labeling and the abundance of oxidation products derived 188

from β-carotene (Beisel et al 2010 Ramel et al 2012a) In leaves of the wild type and 189

AtPSY-overexpressing lines approximately constant β-carotene steady-state levels were 190

confirmed by measuring 14CO2-incorporation into β-carotene (Supplemental Figure 2A) 191

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10

However levels of long-chain β-carotene degradation products remained similarly largely 192

unchanged as revealed by the LC-MS analyses of β-apo-14rsquo- β-apo-12rsquo- β-apo-10rsquo- β-apo-193

8rsquo-carotenal β-apo-13-carotenone and retinal (Supplemental Figure 2B) Moreover 194

carotenoid-derived short-chain volatiles are not found in Arabidopsis leaves (Aharoni et al 195

2003) with the exception of β-cyclocitral and β-ionone which are reported to be generated 196

upon photooxidative stress (Ramel et al 2012b Havaux 2013) We also did not detect these 197

volatiles by GC-MS analysis neither upon headspace sampling nor by the use of various 198

extraction protocols We therefore resorted to analyzing apocarotenoid glycosides (AGs) 199

which are known from a variety of plants especially grapevine where they contribute to the 200

aroma (Winterhalter and Schreier 1995) 201

An extraction protocol for grapevine was adapted which included the enzymatic liberation of 202

the aglycons from aqueous extracts followed by GC-MS analysis (Mathieu et al 2005) This 203

led to the identification of the following four aglycons in Arabidopsis wild-type leaves (the 204

relative peak area percentage is given in parentheses) 3-oxo-α-ionol (apo1 4 ) 3-oxo-α-205

ionone (apo2 3 ) 3-hydroxy-56-epoxy-β-ionone (apo3 80 ) and 6-hydroxy-3-oxo-α-206

ionone (apo4 13 ) Three of these AGs are also identified in grapevine leaf extracts (variety 207

Muumlller-Thurgau) The GC-MS traces representing undigested and glycosidase-treated leaf 208

extracts are shown in Figure 2 Details on the identification of these compounds are shown in 209

Supplemental Figure 3-6 and their characteristics are summarized in Supplemental Table I 210

Xanthophylls appear as the likely precursors for the aglycons identified possible precursor-211

product relationships are shown in Figure 3 The non-hydroxylated apocarotenoid 3-oxo-α-212

ionone (apo2) is probably formed from 3-oxo-α-ionol (apo1) upon oxidation of the hydroxyl 213

group following deglycosylation Direct precursors for 3-oxo-α-ionol (apo1) may be α-ring 214

hydroxylated xanthophylls like lutein and the mono-hydroxylated intermediate α-215

cryptoxanthin Alternatively β-ring hydroxylated xanthophylls like zeaxanthin 216

antheraxanthin and the intermediates β-cryptoxanthin and zeinoxanthin might also serve as 217

precursors requiring β- to ε-ring conversion upon enzymatic liberation this being supported 218

by observations in grapevine (Mathieu et al 2009) 6-Hydroxy-3-oxo-α-ionone (apo4) 219

probably represents a derivative of 3-hydroxy-56-epoxy-β-ionone (apo3) formed upon 220

reduction of the epoxy to a hydroxyl group (Enzell 1985) 3-hydroxy-56-epoxy-β-ionone 221

(apo3) can be formed from epoxy-xanthophylls thus antheraxantin violaxanthin and 222

neoxanthin 223

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11

Interestingly the relative quantification of AGs revealed higher levels in leaves of AtPSY-224

overexpressing lines than in wild-type leaves which correlates with the increased pathway 225

flux determined above (Figure 2 GC-MS chromatograms in Supplemental Figure 7) 226

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12

Hydroxy-xanthophyll derived apocarotenoids (apo1 and apo2) increased about 5-fold and 227

those derived from epoxy-xanthophylls (apo3 and apo4) increased about threefold 228

Considering the reported light stress-induced formation of β-cyclocitral and other carotenoid 229

breakdown products (Ramel et al 2012b) we further examined a possibly increased 230

apocarotenoid glycosylation under high-light stress However both wild-type leaves as well 231

as those from the AtPSY-overexpressing line showed no significant changes in their 232

apocarotenoid aglycon levels after four hours illumination with 1500 micromol photons m-2s-1 233

234

Involvement of enzymatic carotenoid breakdown in apocarotenoid aglycon formation 235

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13

The AGs identified in this work and most of those identified by others in Vitis Boronia and 236

various fruits exhibit a length of 13 carbon atoms (Winterhalter and Skouroumounis 1997 237

Mendes-Pinto 2009 Cooper et al 2011) AGs with various chain lengths would be expected 238

in case of non-enzymatic carotenoid cleavage In order to determine the contribution of 239

enzymatic cleavage we took advantage of Arabidopsis lines deficient in the carotenoid 240

cleavage enzymes CCD1 and CCD4 (Gonzalez-Jorge et al 2013) which exhibit a broad 241

substrate specificity (Bruno et al 2015 Auldridge et al 2006 Vogel et al 2008) The 242

carotenoid levels in leaves from four week old plants of ccd4-1 and a ccd1-1 ccd4-1 double 243

mutant were similar to the wild type (see Table I) However leaves from both the ccd4-1 and 244

the ccd1-1 ccd4-1 mutant showed strongly reduced levels of all AGs with major reductions in 245

3-hydroxy-56-epoxy-β-ionone (apo3) 6-hydroxy-3-oxo-α-ionone (apo4) and 3-oxo-α-ionol 246

(apo1 Figure 4 see Supplemental Figure 8 for GC-MS traces) With 6-hydroxy-3-oxo-α-247

ionone (apo4) as an exception there was no significant difference in AG levels comparing the 248

single and double mutant lines (p gt 025) The residual presence of apocarotenoid aglycons in 249

ccd1-1 ccd4-1 leaves thus suggests additional mechanisms yielding the same cleavage 250

products These results indicate a predominantly enzymatic origin of AGs with a major 251

contribution of CCD4 while CCD1 plays a minor role 252

Given this role of CCD4 and the constant carotenoid levels in leaves of AtPSY-overexpressing 253

lines we challenged flux compensation by crossing AtPSY-overexpressing lines with the 254

ccd4-1 and the ccd1-1 ccd4-1 mutant lines While seedlings heterozygous for the ccd4-1 255

mutation grew indistinguishable from wild-type plants individuals homozygous for ccd4-1 256

developed light-green cotyledons which quickly bleached and died In one weeks old 257

homozygous seedlings carotenoid and chlorophyll contents were reduced by about 40 258

compared to the wild type and pathway intermediates were not detected (Supplemental Figure 259

9) Apparently formation of xanthophyll breakdown products not formed by cleavage through 260

CCD4 can be tolerated only at physiological pathway fluxes However a further increase 261

through higher PSY abundance is lethal presumably due to the excessive presence of 262

apocarotenoids generated by other mechanisms 263

264

Identification of xanthophyll precursors for apocarotenoid glycosides 265

We took advantage of the altered leaf xanthophyll patterns found in two Arabidopsis 266

cytochrome P450-type carotene hydroxylase mutants CYP97C1 catalyzes the hydroxylation 267

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14

of the α-ionone ring present in α-carotene The respective lut1 mutant is therefore 268

characterized by the absence of lutein and the accumulation of the β-ring mono-hydroxylated 269

α-carotene derivative zeinoxanthin (Kim et al 2009 Table I) The mutant leaves showed 270

about threefold increased levels of 3-oxo-α-ionol (apo1) while other AGs remained 271

unchanged and no additional AGs were detected (Figure 4B see Supplemental Figure 10 for 272

GC-MS traces) This excludes lutein as precursor for AGs identified In contrast the 273

increased levels of β-ring hydroxylated xanthophylls in lut1 leaves suggest zeaxanthin 274

antheraxanthin and zeinoxanthin as precursor explaining enhanced levels of 3-oxo-α-ionol 275

(apo1) 276

The second cytochrome P450-type hydroxylase CYP97A3 catalyzes the hydroxylation of β-277

ring xanthophylls and prefers α-carotene as substrate but also shows some β-carotene 278

hydroxylation activity Its absence defines the lut5 phenotype which accumulates increased 279

levels of α-carotene accompanied by an almost equivalent reduction of β-carotene In 280

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15

addition epoxy-xanthophylls like violaxanthin and neoxanthin are reduced (Kim and 281

DellaPenna 2006) In agreement with the suggested origin of 3-hydroxy-56-epoxy-β-ionone 282

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) from epoxy-xanthophylls (Figure 3) leaves of 283

lut5 had strongly reduced levels of these two AGs while those with a suggested origin from 284

hydroxylated xanthophylls decreased only slightly Furthermore both epoxy-xanthophyll 285

derived apocarotenoids decreased proportionally which is in favor of the secondary formation 286

of 6-hydroxy-3-oxo-α-ionone (apo4) from 3-hydroxy-56-epoxy-β-ionone (apo3) 287

288

Analysis of apocarotenoids in roots 289

AGs were also analyzed in roots which accumulate high amounts of β-carotene in response to 290

AtPSY overexpression reflecting low activity of carotene hydroxylases (Maass et al 2009) 291

Although the aglycons of several well-known glycoconjugated precursors were released such 292

as coniferyl alcohol (from coniferin Lewis and Yamamoto 1990) and indol-3-acetonitril 293

(from brassicin Normanly and Bartel 1999 see Supplemental Figure 11) we could not 294

detect any AGs neither in wild-type nor in AtPSY-overexpressing roots Given the xanthophyll 295

origin of the AGs identified this may be attributed to the much lower xanthophyll abundance 296

in roots than in leaves This is contrasted by the presence of long-chain free β-apocarotenals 297

in roots which were up to 50-fold higher in AtPSY-overexpressing lines compared to the wild 298

type (Figure 5) As already mentioned above these were not increased in leaves in response to 299

increased pathway fluxes indicating different mechanisms operating in both tissues 300

301

302

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16

DISCUSSION 303

Compensatory responses towards increased carotenoid flux in Arabidopsis leaves 304

The carotenoid pathway capacity in Arabidopsis leaves is increased in response to the 305

overexpression of the rate-limiting enzyme PSY This is not at all evident from carotenoid 306

levels but can be shown in derived non-green cells like calli and roots (Maass et al 2009) 307

Alternatively phytoene accumulation upon NFZ inhibition can be used as a readout in leaves 308

because most carotenoid turnover apparently and conceivably happens downstream of 309

phytoene This revealed a doubling of phytoene amounts in AtPSY-overexpressing lines 310

compared to wild-type leaves within four hours illumination with control light intensities 311

(Figure 1) and is further confirmed by in vitro measurements of PSY enzyme activity with 312

isolated plastid membranes Using these data it can be estimated that wild-type leaf carotenoid 313

homeostasis entails the de novo synthesis of about 14 of the carotenoids present (or 04 microg 314

mg DW-1) during a 16 hours light period which is enhanced to 28 in AtPSY-overexpressing 315

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17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

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Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

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Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 6: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

6

and lut1 for CYP97C1 deficiency - characterized by altered pigment compositions and the 104

accumulation of monohydroxylated intermediates while deficiency in BCH1 and BCH2 does 105

not affect the pigment composition 106

In green tissues photooxidative destruction seemingly predominates and consumes 107

carotenoids (Simkin et al 2003) Moreover 14CO2 pulse-chase experiments with Arabidopsis 108

leaves identified α- and β-carotene as the main targets for photooxidation while xanthophylls 109

were less affected (Beisel et al 2010) Oxidation assays with β-carotene showed epoxy- and 110

peroxy-derivatives as the main primary products which however undergo further reactions 111

yielding more stable degradation products which are in part the same apocarotenalsones as 112

those being produced enzymatically (Ramel et al 2012a Ramel et al 2012c) 113

In Arabidopsis genes coding for carotenoid cleaving enzymes (carotenoid cleavage 114

dioxygenases CCDs) form a small gene family comprising nine members five of which are 115

attributed to the synthesis of ABA (nine-cis-epoxycarotenoid cleavage dioxygenases NCEDs 116

AtNCED2356 and 9 Tan et al 2003 Iuchi et al 2001) while two are committed to 117

strigolactone biosynthesis (CCD7MAX3 and CCD8MAX4 Alder et al 2012 Bruno et al 118

2014) Orthologs of CCD1 are involved in the generation of volatile apocarotenoids 119

contributing to flower scents and aroma production (eg saffron Rubio et al 2008 120

Frusciante et al 2014 tomato Schwartz et al 2004) while CCD4 enzymes are involved in 121

citrus peel and chrysanthemum petal coloration (Rodrigo et al 2013) Recent analysis of 122

Arabidopsis mutants revealed a major function of CCD4 in regulating seed carotenoid content 123

with only a minor contribution of CCD1 (Gonzalez-Jorge et al 2013) Moreover CCD4 124

activity was required for the synthesis of an apocarotenoid-derived signalling molecule 125

involved in leaf development and retrograde gene expression (Avendantildeo-Vaacutezquez et al 126

2014) 127

Elevated carotenoid pathway flux caused by PSY overexpression increases carotenoid 128

accumulation in various non-green tissues such as tomato fruits canola seeds cassava roots 129

and rice endosperm (Shewmaker et al 1999 Ye et al 2000 Fraser et al 2002 Welsch et 130

al 2010) Similarly the constitutive overexpression of PSY in Arabidopsis results in 131

dramatically increased carotenoid amounts accumulating as crystals in non-green tissues such 132

as roots and callus yielding β-carotene as the main product (Maass et al 2009) However 133

leaves of the very same plants do not show altered pigment composition and phytoene or 134

other pathway intermediates are not detected Similarly increased levels of active PSY 135

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7

protein achieved though overexpression of the ORANGE protein exclusively affect 136

carotenoid amounts in roots but not in leaves (Zhou et al 2015) Leaves from constitutively 137

PSY-overexpressing tomato and tobacco plants are also reported to show only slightly 138

increased carotenoid levels compared to the wild-type control (Fray et al 1995 Busch et al 139

2002) These contrasting responses of leaves versus non-green tissues to elevated pathway 140

flux suggest fundamental differences in the modes of carotenoid formation andor 141

degradation 142

In the present work we identified xanthophyll-derived apocarotenoid glycosides in 143

Arabidopsis leaves which increase upon higher pathway flux This suggests apocarotenoid 144

glycosylation to function as a valve regulating carotenoid steady-state levels in leaves The 145

analysis of Arabidopsis mutants enabled us to conclude on potential precursor carotenoids and 146

to assess the contribution of carotenoid cleavage enzymes on their formation Moreover 147

apocarotenoids but not the identified glycosides were increased in carotenoid-148

hyperaccumulating roots indicating tissue-specifically different modes of carotenoid turnover 149

regulation 150

151

152

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8

RESULTS 153

Carotenoid pathway flux and PSY localization upon increased PSY protein levels 154

In Arabidopsis roots the constitutive AtPSY overexpression results in an up to 100-fold 155

increased carotenoid accumulation In contrast leaves of these lines do not respond and 156

contain carotenoid amounts like the wild type although PSY protein levels are strongly 157

elevated (Maass et al 2009) Increased pathway flux might be compensated by higher 158

turnover of leaf carotenoids Alternatively overexpressed PSY protein might be 159

enzymatically inactive In order to discriminate we determined the phytoene synthesis rates 160

in detached leaves using the phytoene desaturase inhibitor norflurazon (NFZ) assuming that 161

phytoene exhibits an increased resistance towards degradation processes (Simkin et al 2003) 162

We followed an established protocol consisting of a two-hour preincubation in the dark 163

followed by four-hour illumination on NFZ solution (Beisel et al 2011) Wild-type leaves 164

accumulated about 20 mmol phytoene per mol chl a+b (or 01 microg phytoene per mg DW) 165

within four hours exposure to control light (Figure 1) while high light intensity further 166

increased phytoene levels by fivefold reaching 100 mmol phytoene per mol chl a+b 167

NFZ-treated leaves of AtPSY-overexpressing lines illuminated with high light accumulated 168

the same high phytoene levels of 100 mmol phytoene per mol chl a+b However the 169

illumination with control light yielded about 50 mmol phytoene per mol chl a+b thus 25-fold 170

higher levels compared with wild-type leaves This indicates that higher PSY protein amounts 171

in the transgenics do increase the pathway flux although leaf steady-state carotenoid levels 172

remain unaffected At high light intensities phytoene synthesis is apparently limited by other 173

factors such as an exhausted precursor pool 174

The twofold increased phytoene synthesis capacity in AtPSY-overexpressing lines contrasts 175

with the much larger up to 20-fold higher PSY protein levels in leaves (Maass et al 2009) 176

and in chloroplast extracts (Figure 1D) Chloroplast sub-fractionation revealed that PSY was 177

in fact elevated by only about twofold in the membranes the remainder is apparently soluble 178

in the stroma and therefore inactive In vitro measurements of PSY activity confirmed an 179

almost twofold higher PSY activity in the membrane fractions (0157 +- 0062 nmol [14C]-180

phytoene min-1 in At22 versus 0082 +- 002 nmol [14C]-phytoene min-1 in wt a TLC scan is 181

supplied in Supplemental Figure 1) while phytoene synthesis was not detectable in stroma 182

fractions (Figure 1C) 183

184

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9

Identification of apocarotenoid glycosides in Arabidopsis leaves 185

An increased pathway flux not leading to higher carotenoid levels suggests increased 186

carotenoid turnover This is thought to occur predominantly at the β-carotene level as 187

revealed by 14CO2 pulse-chase labeling and the abundance of oxidation products derived 188

from β-carotene (Beisel et al 2010 Ramel et al 2012a) In leaves of the wild type and 189

AtPSY-overexpressing lines approximately constant β-carotene steady-state levels were 190

confirmed by measuring 14CO2-incorporation into β-carotene (Supplemental Figure 2A) 191

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10

However levels of long-chain β-carotene degradation products remained similarly largely 192

unchanged as revealed by the LC-MS analyses of β-apo-14rsquo- β-apo-12rsquo- β-apo-10rsquo- β-apo-193

8rsquo-carotenal β-apo-13-carotenone and retinal (Supplemental Figure 2B) Moreover 194

carotenoid-derived short-chain volatiles are not found in Arabidopsis leaves (Aharoni et al 195

2003) with the exception of β-cyclocitral and β-ionone which are reported to be generated 196

upon photooxidative stress (Ramel et al 2012b Havaux 2013) We also did not detect these 197

volatiles by GC-MS analysis neither upon headspace sampling nor by the use of various 198

extraction protocols We therefore resorted to analyzing apocarotenoid glycosides (AGs) 199

which are known from a variety of plants especially grapevine where they contribute to the 200

aroma (Winterhalter and Schreier 1995) 201

An extraction protocol for grapevine was adapted which included the enzymatic liberation of 202

the aglycons from aqueous extracts followed by GC-MS analysis (Mathieu et al 2005) This 203

led to the identification of the following four aglycons in Arabidopsis wild-type leaves (the 204

relative peak area percentage is given in parentheses) 3-oxo-α-ionol (apo1 4 ) 3-oxo-α-205

ionone (apo2 3 ) 3-hydroxy-56-epoxy-β-ionone (apo3 80 ) and 6-hydroxy-3-oxo-α-206

ionone (apo4 13 ) Three of these AGs are also identified in grapevine leaf extracts (variety 207

Muumlller-Thurgau) The GC-MS traces representing undigested and glycosidase-treated leaf 208

extracts are shown in Figure 2 Details on the identification of these compounds are shown in 209

Supplemental Figure 3-6 and their characteristics are summarized in Supplemental Table I 210

Xanthophylls appear as the likely precursors for the aglycons identified possible precursor-211

product relationships are shown in Figure 3 The non-hydroxylated apocarotenoid 3-oxo-α-212

ionone (apo2) is probably formed from 3-oxo-α-ionol (apo1) upon oxidation of the hydroxyl 213

group following deglycosylation Direct precursors for 3-oxo-α-ionol (apo1) may be α-ring 214

hydroxylated xanthophylls like lutein and the mono-hydroxylated intermediate α-215

cryptoxanthin Alternatively β-ring hydroxylated xanthophylls like zeaxanthin 216

antheraxanthin and the intermediates β-cryptoxanthin and zeinoxanthin might also serve as 217

precursors requiring β- to ε-ring conversion upon enzymatic liberation this being supported 218

by observations in grapevine (Mathieu et al 2009) 6-Hydroxy-3-oxo-α-ionone (apo4) 219

probably represents a derivative of 3-hydroxy-56-epoxy-β-ionone (apo3) formed upon 220

reduction of the epoxy to a hydroxyl group (Enzell 1985) 3-hydroxy-56-epoxy-β-ionone 221

(apo3) can be formed from epoxy-xanthophylls thus antheraxantin violaxanthin and 222

neoxanthin 223

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11

Interestingly the relative quantification of AGs revealed higher levels in leaves of AtPSY-224

overexpressing lines than in wild-type leaves which correlates with the increased pathway 225

flux determined above (Figure 2 GC-MS chromatograms in Supplemental Figure 7) 226

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12

Hydroxy-xanthophyll derived apocarotenoids (apo1 and apo2) increased about 5-fold and 227

those derived from epoxy-xanthophylls (apo3 and apo4) increased about threefold 228

Considering the reported light stress-induced formation of β-cyclocitral and other carotenoid 229

breakdown products (Ramel et al 2012b) we further examined a possibly increased 230

apocarotenoid glycosylation under high-light stress However both wild-type leaves as well 231

as those from the AtPSY-overexpressing line showed no significant changes in their 232

apocarotenoid aglycon levels after four hours illumination with 1500 micromol photons m-2s-1 233

234

Involvement of enzymatic carotenoid breakdown in apocarotenoid aglycon formation 235

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13

The AGs identified in this work and most of those identified by others in Vitis Boronia and 236

various fruits exhibit a length of 13 carbon atoms (Winterhalter and Skouroumounis 1997 237

Mendes-Pinto 2009 Cooper et al 2011) AGs with various chain lengths would be expected 238

in case of non-enzymatic carotenoid cleavage In order to determine the contribution of 239

enzymatic cleavage we took advantage of Arabidopsis lines deficient in the carotenoid 240

cleavage enzymes CCD1 and CCD4 (Gonzalez-Jorge et al 2013) which exhibit a broad 241

substrate specificity (Bruno et al 2015 Auldridge et al 2006 Vogel et al 2008) The 242

carotenoid levels in leaves from four week old plants of ccd4-1 and a ccd1-1 ccd4-1 double 243

mutant were similar to the wild type (see Table I) However leaves from both the ccd4-1 and 244

the ccd1-1 ccd4-1 mutant showed strongly reduced levels of all AGs with major reductions in 245

3-hydroxy-56-epoxy-β-ionone (apo3) 6-hydroxy-3-oxo-α-ionone (apo4) and 3-oxo-α-ionol 246

(apo1 Figure 4 see Supplemental Figure 8 for GC-MS traces) With 6-hydroxy-3-oxo-α-247

ionone (apo4) as an exception there was no significant difference in AG levels comparing the 248

single and double mutant lines (p gt 025) The residual presence of apocarotenoid aglycons in 249

ccd1-1 ccd4-1 leaves thus suggests additional mechanisms yielding the same cleavage 250

products These results indicate a predominantly enzymatic origin of AGs with a major 251

contribution of CCD4 while CCD1 plays a minor role 252

Given this role of CCD4 and the constant carotenoid levels in leaves of AtPSY-overexpressing 253

lines we challenged flux compensation by crossing AtPSY-overexpressing lines with the 254

ccd4-1 and the ccd1-1 ccd4-1 mutant lines While seedlings heterozygous for the ccd4-1 255

mutation grew indistinguishable from wild-type plants individuals homozygous for ccd4-1 256

developed light-green cotyledons which quickly bleached and died In one weeks old 257

homozygous seedlings carotenoid and chlorophyll contents were reduced by about 40 258

compared to the wild type and pathway intermediates were not detected (Supplemental Figure 259

9) Apparently formation of xanthophyll breakdown products not formed by cleavage through 260

CCD4 can be tolerated only at physiological pathway fluxes However a further increase 261

through higher PSY abundance is lethal presumably due to the excessive presence of 262

apocarotenoids generated by other mechanisms 263

264

Identification of xanthophyll precursors for apocarotenoid glycosides 265

We took advantage of the altered leaf xanthophyll patterns found in two Arabidopsis 266

cytochrome P450-type carotene hydroxylase mutants CYP97C1 catalyzes the hydroxylation 267

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14

of the α-ionone ring present in α-carotene The respective lut1 mutant is therefore 268

characterized by the absence of lutein and the accumulation of the β-ring mono-hydroxylated 269

α-carotene derivative zeinoxanthin (Kim et al 2009 Table I) The mutant leaves showed 270

about threefold increased levels of 3-oxo-α-ionol (apo1) while other AGs remained 271

unchanged and no additional AGs were detected (Figure 4B see Supplemental Figure 10 for 272

GC-MS traces) This excludes lutein as precursor for AGs identified In contrast the 273

increased levels of β-ring hydroxylated xanthophylls in lut1 leaves suggest zeaxanthin 274

antheraxanthin and zeinoxanthin as precursor explaining enhanced levels of 3-oxo-α-ionol 275

(apo1) 276

The second cytochrome P450-type hydroxylase CYP97A3 catalyzes the hydroxylation of β-277

ring xanthophylls and prefers α-carotene as substrate but also shows some β-carotene 278

hydroxylation activity Its absence defines the lut5 phenotype which accumulates increased 279

levels of α-carotene accompanied by an almost equivalent reduction of β-carotene In 280

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15

addition epoxy-xanthophylls like violaxanthin and neoxanthin are reduced (Kim and 281

DellaPenna 2006) In agreement with the suggested origin of 3-hydroxy-56-epoxy-β-ionone 282

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) from epoxy-xanthophylls (Figure 3) leaves of 283

lut5 had strongly reduced levels of these two AGs while those with a suggested origin from 284

hydroxylated xanthophylls decreased only slightly Furthermore both epoxy-xanthophyll 285

derived apocarotenoids decreased proportionally which is in favor of the secondary formation 286

of 6-hydroxy-3-oxo-α-ionone (apo4) from 3-hydroxy-56-epoxy-β-ionone (apo3) 287

288

Analysis of apocarotenoids in roots 289

AGs were also analyzed in roots which accumulate high amounts of β-carotene in response to 290

AtPSY overexpression reflecting low activity of carotene hydroxylases (Maass et al 2009) 291

Although the aglycons of several well-known glycoconjugated precursors were released such 292

as coniferyl alcohol (from coniferin Lewis and Yamamoto 1990) and indol-3-acetonitril 293

(from brassicin Normanly and Bartel 1999 see Supplemental Figure 11) we could not 294

detect any AGs neither in wild-type nor in AtPSY-overexpressing roots Given the xanthophyll 295

origin of the AGs identified this may be attributed to the much lower xanthophyll abundance 296

in roots than in leaves This is contrasted by the presence of long-chain free β-apocarotenals 297

in roots which were up to 50-fold higher in AtPSY-overexpressing lines compared to the wild 298

type (Figure 5) As already mentioned above these were not increased in leaves in response to 299

increased pathway fluxes indicating different mechanisms operating in both tissues 300

301

302

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16

DISCUSSION 303

Compensatory responses towards increased carotenoid flux in Arabidopsis leaves 304

The carotenoid pathway capacity in Arabidopsis leaves is increased in response to the 305

overexpression of the rate-limiting enzyme PSY This is not at all evident from carotenoid 306

levels but can be shown in derived non-green cells like calli and roots (Maass et al 2009) 307

Alternatively phytoene accumulation upon NFZ inhibition can be used as a readout in leaves 308

because most carotenoid turnover apparently and conceivably happens downstream of 309

phytoene This revealed a doubling of phytoene amounts in AtPSY-overexpressing lines 310

compared to wild-type leaves within four hours illumination with control light intensities 311

(Figure 1) and is further confirmed by in vitro measurements of PSY enzyme activity with 312

isolated plastid membranes Using these data it can be estimated that wild-type leaf carotenoid 313

homeostasis entails the de novo synthesis of about 14 of the carotenoids present (or 04 microg 314

mg DW-1) during a 16 hours light period which is enhanced to 28 in AtPSY-overexpressing 315

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17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

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Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 7: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

7

protein achieved though overexpression of the ORANGE protein exclusively affect 136

carotenoid amounts in roots but not in leaves (Zhou et al 2015) Leaves from constitutively 137

PSY-overexpressing tomato and tobacco plants are also reported to show only slightly 138

increased carotenoid levels compared to the wild-type control (Fray et al 1995 Busch et al 139

2002) These contrasting responses of leaves versus non-green tissues to elevated pathway 140

flux suggest fundamental differences in the modes of carotenoid formation andor 141

degradation 142

In the present work we identified xanthophyll-derived apocarotenoid glycosides in 143

Arabidopsis leaves which increase upon higher pathway flux This suggests apocarotenoid 144

glycosylation to function as a valve regulating carotenoid steady-state levels in leaves The 145

analysis of Arabidopsis mutants enabled us to conclude on potential precursor carotenoids and 146

to assess the contribution of carotenoid cleavage enzymes on their formation Moreover 147

apocarotenoids but not the identified glycosides were increased in carotenoid-148

hyperaccumulating roots indicating tissue-specifically different modes of carotenoid turnover 149

regulation 150

151

152

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8

RESULTS 153

Carotenoid pathway flux and PSY localization upon increased PSY protein levels 154

In Arabidopsis roots the constitutive AtPSY overexpression results in an up to 100-fold 155

increased carotenoid accumulation In contrast leaves of these lines do not respond and 156

contain carotenoid amounts like the wild type although PSY protein levels are strongly 157

elevated (Maass et al 2009) Increased pathway flux might be compensated by higher 158

turnover of leaf carotenoids Alternatively overexpressed PSY protein might be 159

enzymatically inactive In order to discriminate we determined the phytoene synthesis rates 160

in detached leaves using the phytoene desaturase inhibitor norflurazon (NFZ) assuming that 161

phytoene exhibits an increased resistance towards degradation processes (Simkin et al 2003) 162

We followed an established protocol consisting of a two-hour preincubation in the dark 163

followed by four-hour illumination on NFZ solution (Beisel et al 2011) Wild-type leaves 164

accumulated about 20 mmol phytoene per mol chl a+b (or 01 microg phytoene per mg DW) 165

within four hours exposure to control light (Figure 1) while high light intensity further 166

increased phytoene levels by fivefold reaching 100 mmol phytoene per mol chl a+b 167

NFZ-treated leaves of AtPSY-overexpressing lines illuminated with high light accumulated 168

the same high phytoene levels of 100 mmol phytoene per mol chl a+b However the 169

illumination with control light yielded about 50 mmol phytoene per mol chl a+b thus 25-fold 170

higher levels compared with wild-type leaves This indicates that higher PSY protein amounts 171

in the transgenics do increase the pathway flux although leaf steady-state carotenoid levels 172

remain unaffected At high light intensities phytoene synthesis is apparently limited by other 173

factors such as an exhausted precursor pool 174

The twofold increased phytoene synthesis capacity in AtPSY-overexpressing lines contrasts 175

with the much larger up to 20-fold higher PSY protein levels in leaves (Maass et al 2009) 176

and in chloroplast extracts (Figure 1D) Chloroplast sub-fractionation revealed that PSY was 177

in fact elevated by only about twofold in the membranes the remainder is apparently soluble 178

in the stroma and therefore inactive In vitro measurements of PSY activity confirmed an 179

almost twofold higher PSY activity in the membrane fractions (0157 +- 0062 nmol [14C]-180

phytoene min-1 in At22 versus 0082 +- 002 nmol [14C]-phytoene min-1 in wt a TLC scan is 181

supplied in Supplemental Figure 1) while phytoene synthesis was not detectable in stroma 182

fractions (Figure 1C) 183

184

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9

Identification of apocarotenoid glycosides in Arabidopsis leaves 185

An increased pathway flux not leading to higher carotenoid levels suggests increased 186

carotenoid turnover This is thought to occur predominantly at the β-carotene level as 187

revealed by 14CO2 pulse-chase labeling and the abundance of oxidation products derived 188

from β-carotene (Beisel et al 2010 Ramel et al 2012a) In leaves of the wild type and 189

AtPSY-overexpressing lines approximately constant β-carotene steady-state levels were 190

confirmed by measuring 14CO2-incorporation into β-carotene (Supplemental Figure 2A) 191

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10

However levels of long-chain β-carotene degradation products remained similarly largely 192

unchanged as revealed by the LC-MS analyses of β-apo-14rsquo- β-apo-12rsquo- β-apo-10rsquo- β-apo-193

8rsquo-carotenal β-apo-13-carotenone and retinal (Supplemental Figure 2B) Moreover 194

carotenoid-derived short-chain volatiles are not found in Arabidopsis leaves (Aharoni et al 195

2003) with the exception of β-cyclocitral and β-ionone which are reported to be generated 196

upon photooxidative stress (Ramel et al 2012b Havaux 2013) We also did not detect these 197

volatiles by GC-MS analysis neither upon headspace sampling nor by the use of various 198

extraction protocols We therefore resorted to analyzing apocarotenoid glycosides (AGs) 199

which are known from a variety of plants especially grapevine where they contribute to the 200

aroma (Winterhalter and Schreier 1995) 201

An extraction protocol for grapevine was adapted which included the enzymatic liberation of 202

the aglycons from aqueous extracts followed by GC-MS analysis (Mathieu et al 2005) This 203

led to the identification of the following four aglycons in Arabidopsis wild-type leaves (the 204

relative peak area percentage is given in parentheses) 3-oxo-α-ionol (apo1 4 ) 3-oxo-α-205

ionone (apo2 3 ) 3-hydroxy-56-epoxy-β-ionone (apo3 80 ) and 6-hydroxy-3-oxo-α-206

ionone (apo4 13 ) Three of these AGs are also identified in grapevine leaf extracts (variety 207

Muumlller-Thurgau) The GC-MS traces representing undigested and glycosidase-treated leaf 208

extracts are shown in Figure 2 Details on the identification of these compounds are shown in 209

Supplemental Figure 3-6 and their characteristics are summarized in Supplemental Table I 210

Xanthophylls appear as the likely precursors for the aglycons identified possible precursor-211

product relationships are shown in Figure 3 The non-hydroxylated apocarotenoid 3-oxo-α-212

ionone (apo2) is probably formed from 3-oxo-α-ionol (apo1) upon oxidation of the hydroxyl 213

group following deglycosylation Direct precursors for 3-oxo-α-ionol (apo1) may be α-ring 214

hydroxylated xanthophylls like lutein and the mono-hydroxylated intermediate α-215

cryptoxanthin Alternatively β-ring hydroxylated xanthophylls like zeaxanthin 216

antheraxanthin and the intermediates β-cryptoxanthin and zeinoxanthin might also serve as 217

precursors requiring β- to ε-ring conversion upon enzymatic liberation this being supported 218

by observations in grapevine (Mathieu et al 2009) 6-Hydroxy-3-oxo-α-ionone (apo4) 219

probably represents a derivative of 3-hydroxy-56-epoxy-β-ionone (apo3) formed upon 220

reduction of the epoxy to a hydroxyl group (Enzell 1985) 3-hydroxy-56-epoxy-β-ionone 221

(apo3) can be formed from epoxy-xanthophylls thus antheraxantin violaxanthin and 222

neoxanthin 223

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11

Interestingly the relative quantification of AGs revealed higher levels in leaves of AtPSY-224

overexpressing lines than in wild-type leaves which correlates with the increased pathway 225

flux determined above (Figure 2 GC-MS chromatograms in Supplemental Figure 7) 226

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12

Hydroxy-xanthophyll derived apocarotenoids (apo1 and apo2) increased about 5-fold and 227

those derived from epoxy-xanthophylls (apo3 and apo4) increased about threefold 228

Considering the reported light stress-induced formation of β-cyclocitral and other carotenoid 229

breakdown products (Ramel et al 2012b) we further examined a possibly increased 230

apocarotenoid glycosylation under high-light stress However both wild-type leaves as well 231

as those from the AtPSY-overexpressing line showed no significant changes in their 232

apocarotenoid aglycon levels after four hours illumination with 1500 micromol photons m-2s-1 233

234

Involvement of enzymatic carotenoid breakdown in apocarotenoid aglycon formation 235

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13

The AGs identified in this work and most of those identified by others in Vitis Boronia and 236

various fruits exhibit a length of 13 carbon atoms (Winterhalter and Skouroumounis 1997 237

Mendes-Pinto 2009 Cooper et al 2011) AGs with various chain lengths would be expected 238

in case of non-enzymatic carotenoid cleavage In order to determine the contribution of 239

enzymatic cleavage we took advantage of Arabidopsis lines deficient in the carotenoid 240

cleavage enzymes CCD1 and CCD4 (Gonzalez-Jorge et al 2013) which exhibit a broad 241

substrate specificity (Bruno et al 2015 Auldridge et al 2006 Vogel et al 2008) The 242

carotenoid levels in leaves from four week old plants of ccd4-1 and a ccd1-1 ccd4-1 double 243

mutant were similar to the wild type (see Table I) However leaves from both the ccd4-1 and 244

the ccd1-1 ccd4-1 mutant showed strongly reduced levels of all AGs with major reductions in 245

3-hydroxy-56-epoxy-β-ionone (apo3) 6-hydroxy-3-oxo-α-ionone (apo4) and 3-oxo-α-ionol 246

(apo1 Figure 4 see Supplemental Figure 8 for GC-MS traces) With 6-hydroxy-3-oxo-α-247

ionone (apo4) as an exception there was no significant difference in AG levels comparing the 248

single and double mutant lines (p gt 025) The residual presence of apocarotenoid aglycons in 249

ccd1-1 ccd4-1 leaves thus suggests additional mechanisms yielding the same cleavage 250

products These results indicate a predominantly enzymatic origin of AGs with a major 251

contribution of CCD4 while CCD1 plays a minor role 252

Given this role of CCD4 and the constant carotenoid levels in leaves of AtPSY-overexpressing 253

lines we challenged flux compensation by crossing AtPSY-overexpressing lines with the 254

ccd4-1 and the ccd1-1 ccd4-1 mutant lines While seedlings heterozygous for the ccd4-1 255

mutation grew indistinguishable from wild-type plants individuals homozygous for ccd4-1 256

developed light-green cotyledons which quickly bleached and died In one weeks old 257

homozygous seedlings carotenoid and chlorophyll contents were reduced by about 40 258

compared to the wild type and pathway intermediates were not detected (Supplemental Figure 259

9) Apparently formation of xanthophyll breakdown products not formed by cleavage through 260

CCD4 can be tolerated only at physiological pathway fluxes However a further increase 261

through higher PSY abundance is lethal presumably due to the excessive presence of 262

apocarotenoids generated by other mechanisms 263

264

Identification of xanthophyll precursors for apocarotenoid glycosides 265

We took advantage of the altered leaf xanthophyll patterns found in two Arabidopsis 266

cytochrome P450-type carotene hydroxylase mutants CYP97C1 catalyzes the hydroxylation 267

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14

of the α-ionone ring present in α-carotene The respective lut1 mutant is therefore 268

characterized by the absence of lutein and the accumulation of the β-ring mono-hydroxylated 269

α-carotene derivative zeinoxanthin (Kim et al 2009 Table I) The mutant leaves showed 270

about threefold increased levels of 3-oxo-α-ionol (apo1) while other AGs remained 271

unchanged and no additional AGs were detected (Figure 4B see Supplemental Figure 10 for 272

GC-MS traces) This excludes lutein as precursor for AGs identified In contrast the 273

increased levels of β-ring hydroxylated xanthophylls in lut1 leaves suggest zeaxanthin 274

antheraxanthin and zeinoxanthin as precursor explaining enhanced levels of 3-oxo-α-ionol 275

(apo1) 276

The second cytochrome P450-type hydroxylase CYP97A3 catalyzes the hydroxylation of β-277

ring xanthophylls and prefers α-carotene as substrate but also shows some β-carotene 278

hydroxylation activity Its absence defines the lut5 phenotype which accumulates increased 279

levels of α-carotene accompanied by an almost equivalent reduction of β-carotene In 280

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15

addition epoxy-xanthophylls like violaxanthin and neoxanthin are reduced (Kim and 281

DellaPenna 2006) In agreement with the suggested origin of 3-hydroxy-56-epoxy-β-ionone 282

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) from epoxy-xanthophylls (Figure 3) leaves of 283

lut5 had strongly reduced levels of these two AGs while those with a suggested origin from 284

hydroxylated xanthophylls decreased only slightly Furthermore both epoxy-xanthophyll 285

derived apocarotenoids decreased proportionally which is in favor of the secondary formation 286

of 6-hydroxy-3-oxo-α-ionone (apo4) from 3-hydroxy-56-epoxy-β-ionone (apo3) 287

288

Analysis of apocarotenoids in roots 289

AGs were also analyzed in roots which accumulate high amounts of β-carotene in response to 290

AtPSY overexpression reflecting low activity of carotene hydroxylases (Maass et al 2009) 291

Although the aglycons of several well-known glycoconjugated precursors were released such 292

as coniferyl alcohol (from coniferin Lewis and Yamamoto 1990) and indol-3-acetonitril 293

(from brassicin Normanly and Bartel 1999 see Supplemental Figure 11) we could not 294

detect any AGs neither in wild-type nor in AtPSY-overexpressing roots Given the xanthophyll 295

origin of the AGs identified this may be attributed to the much lower xanthophyll abundance 296

in roots than in leaves This is contrasted by the presence of long-chain free β-apocarotenals 297

in roots which were up to 50-fold higher in AtPSY-overexpressing lines compared to the wild 298

type (Figure 5) As already mentioned above these were not increased in leaves in response to 299

increased pathway fluxes indicating different mechanisms operating in both tissues 300

301

302

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16

DISCUSSION 303

Compensatory responses towards increased carotenoid flux in Arabidopsis leaves 304

The carotenoid pathway capacity in Arabidopsis leaves is increased in response to the 305

overexpression of the rate-limiting enzyme PSY This is not at all evident from carotenoid 306

levels but can be shown in derived non-green cells like calli and roots (Maass et al 2009) 307

Alternatively phytoene accumulation upon NFZ inhibition can be used as a readout in leaves 308

because most carotenoid turnover apparently and conceivably happens downstream of 309

phytoene This revealed a doubling of phytoene amounts in AtPSY-overexpressing lines 310

compared to wild-type leaves within four hours illumination with control light intensities 311

(Figure 1) and is further confirmed by in vitro measurements of PSY enzyme activity with 312

isolated plastid membranes Using these data it can be estimated that wild-type leaf carotenoid 313

homeostasis entails the de novo synthesis of about 14 of the carotenoids present (or 04 microg 314

mg DW-1) during a 16 hours light period which is enhanced to 28 in AtPSY-overexpressing 315

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17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

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Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 8: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

8

RESULTS 153

Carotenoid pathway flux and PSY localization upon increased PSY protein levels 154

In Arabidopsis roots the constitutive AtPSY overexpression results in an up to 100-fold 155

increased carotenoid accumulation In contrast leaves of these lines do not respond and 156

contain carotenoid amounts like the wild type although PSY protein levels are strongly 157

elevated (Maass et al 2009) Increased pathway flux might be compensated by higher 158

turnover of leaf carotenoids Alternatively overexpressed PSY protein might be 159

enzymatically inactive In order to discriminate we determined the phytoene synthesis rates 160

in detached leaves using the phytoene desaturase inhibitor norflurazon (NFZ) assuming that 161

phytoene exhibits an increased resistance towards degradation processes (Simkin et al 2003) 162

We followed an established protocol consisting of a two-hour preincubation in the dark 163

followed by four-hour illumination on NFZ solution (Beisel et al 2011) Wild-type leaves 164

accumulated about 20 mmol phytoene per mol chl a+b (or 01 microg phytoene per mg DW) 165

within four hours exposure to control light (Figure 1) while high light intensity further 166

increased phytoene levels by fivefold reaching 100 mmol phytoene per mol chl a+b 167

NFZ-treated leaves of AtPSY-overexpressing lines illuminated with high light accumulated 168

the same high phytoene levels of 100 mmol phytoene per mol chl a+b However the 169

illumination with control light yielded about 50 mmol phytoene per mol chl a+b thus 25-fold 170

higher levels compared with wild-type leaves This indicates that higher PSY protein amounts 171

in the transgenics do increase the pathway flux although leaf steady-state carotenoid levels 172

remain unaffected At high light intensities phytoene synthesis is apparently limited by other 173

factors such as an exhausted precursor pool 174

The twofold increased phytoene synthesis capacity in AtPSY-overexpressing lines contrasts 175

with the much larger up to 20-fold higher PSY protein levels in leaves (Maass et al 2009) 176

and in chloroplast extracts (Figure 1D) Chloroplast sub-fractionation revealed that PSY was 177

in fact elevated by only about twofold in the membranes the remainder is apparently soluble 178

in the stroma and therefore inactive In vitro measurements of PSY activity confirmed an 179

almost twofold higher PSY activity in the membrane fractions (0157 +- 0062 nmol [14C]-180

phytoene min-1 in At22 versus 0082 +- 002 nmol [14C]-phytoene min-1 in wt a TLC scan is 181

supplied in Supplemental Figure 1) while phytoene synthesis was not detectable in stroma 182

fractions (Figure 1C) 183

184

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9

Identification of apocarotenoid glycosides in Arabidopsis leaves 185

An increased pathway flux not leading to higher carotenoid levels suggests increased 186

carotenoid turnover This is thought to occur predominantly at the β-carotene level as 187

revealed by 14CO2 pulse-chase labeling and the abundance of oxidation products derived 188

from β-carotene (Beisel et al 2010 Ramel et al 2012a) In leaves of the wild type and 189

AtPSY-overexpressing lines approximately constant β-carotene steady-state levels were 190

confirmed by measuring 14CO2-incorporation into β-carotene (Supplemental Figure 2A) 191

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10

However levels of long-chain β-carotene degradation products remained similarly largely 192

unchanged as revealed by the LC-MS analyses of β-apo-14rsquo- β-apo-12rsquo- β-apo-10rsquo- β-apo-193

8rsquo-carotenal β-apo-13-carotenone and retinal (Supplemental Figure 2B) Moreover 194

carotenoid-derived short-chain volatiles are not found in Arabidopsis leaves (Aharoni et al 195

2003) with the exception of β-cyclocitral and β-ionone which are reported to be generated 196

upon photooxidative stress (Ramel et al 2012b Havaux 2013) We also did not detect these 197

volatiles by GC-MS analysis neither upon headspace sampling nor by the use of various 198

extraction protocols We therefore resorted to analyzing apocarotenoid glycosides (AGs) 199

which are known from a variety of plants especially grapevine where they contribute to the 200

aroma (Winterhalter and Schreier 1995) 201

An extraction protocol for grapevine was adapted which included the enzymatic liberation of 202

the aglycons from aqueous extracts followed by GC-MS analysis (Mathieu et al 2005) This 203

led to the identification of the following four aglycons in Arabidopsis wild-type leaves (the 204

relative peak area percentage is given in parentheses) 3-oxo-α-ionol (apo1 4 ) 3-oxo-α-205

ionone (apo2 3 ) 3-hydroxy-56-epoxy-β-ionone (apo3 80 ) and 6-hydroxy-3-oxo-α-206

ionone (apo4 13 ) Three of these AGs are also identified in grapevine leaf extracts (variety 207

Muumlller-Thurgau) The GC-MS traces representing undigested and glycosidase-treated leaf 208

extracts are shown in Figure 2 Details on the identification of these compounds are shown in 209

Supplemental Figure 3-6 and their characteristics are summarized in Supplemental Table I 210

Xanthophylls appear as the likely precursors for the aglycons identified possible precursor-211

product relationships are shown in Figure 3 The non-hydroxylated apocarotenoid 3-oxo-α-212

ionone (apo2) is probably formed from 3-oxo-α-ionol (apo1) upon oxidation of the hydroxyl 213

group following deglycosylation Direct precursors for 3-oxo-α-ionol (apo1) may be α-ring 214

hydroxylated xanthophylls like lutein and the mono-hydroxylated intermediate α-215

cryptoxanthin Alternatively β-ring hydroxylated xanthophylls like zeaxanthin 216

antheraxanthin and the intermediates β-cryptoxanthin and zeinoxanthin might also serve as 217

precursors requiring β- to ε-ring conversion upon enzymatic liberation this being supported 218

by observations in grapevine (Mathieu et al 2009) 6-Hydroxy-3-oxo-α-ionone (apo4) 219

probably represents a derivative of 3-hydroxy-56-epoxy-β-ionone (apo3) formed upon 220

reduction of the epoxy to a hydroxyl group (Enzell 1985) 3-hydroxy-56-epoxy-β-ionone 221

(apo3) can be formed from epoxy-xanthophylls thus antheraxantin violaxanthin and 222

neoxanthin 223

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11

Interestingly the relative quantification of AGs revealed higher levels in leaves of AtPSY-224

overexpressing lines than in wild-type leaves which correlates with the increased pathway 225

flux determined above (Figure 2 GC-MS chromatograms in Supplemental Figure 7) 226

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12

Hydroxy-xanthophyll derived apocarotenoids (apo1 and apo2) increased about 5-fold and 227

those derived from epoxy-xanthophylls (apo3 and apo4) increased about threefold 228

Considering the reported light stress-induced formation of β-cyclocitral and other carotenoid 229

breakdown products (Ramel et al 2012b) we further examined a possibly increased 230

apocarotenoid glycosylation under high-light stress However both wild-type leaves as well 231

as those from the AtPSY-overexpressing line showed no significant changes in their 232

apocarotenoid aglycon levels after four hours illumination with 1500 micromol photons m-2s-1 233

234

Involvement of enzymatic carotenoid breakdown in apocarotenoid aglycon formation 235

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13

The AGs identified in this work and most of those identified by others in Vitis Boronia and 236

various fruits exhibit a length of 13 carbon atoms (Winterhalter and Skouroumounis 1997 237

Mendes-Pinto 2009 Cooper et al 2011) AGs with various chain lengths would be expected 238

in case of non-enzymatic carotenoid cleavage In order to determine the contribution of 239

enzymatic cleavage we took advantage of Arabidopsis lines deficient in the carotenoid 240

cleavage enzymes CCD1 and CCD4 (Gonzalez-Jorge et al 2013) which exhibit a broad 241

substrate specificity (Bruno et al 2015 Auldridge et al 2006 Vogel et al 2008) The 242

carotenoid levels in leaves from four week old plants of ccd4-1 and a ccd1-1 ccd4-1 double 243

mutant were similar to the wild type (see Table I) However leaves from both the ccd4-1 and 244

the ccd1-1 ccd4-1 mutant showed strongly reduced levels of all AGs with major reductions in 245

3-hydroxy-56-epoxy-β-ionone (apo3) 6-hydroxy-3-oxo-α-ionone (apo4) and 3-oxo-α-ionol 246

(apo1 Figure 4 see Supplemental Figure 8 for GC-MS traces) With 6-hydroxy-3-oxo-α-247

ionone (apo4) as an exception there was no significant difference in AG levels comparing the 248

single and double mutant lines (p gt 025) The residual presence of apocarotenoid aglycons in 249

ccd1-1 ccd4-1 leaves thus suggests additional mechanisms yielding the same cleavage 250

products These results indicate a predominantly enzymatic origin of AGs with a major 251

contribution of CCD4 while CCD1 plays a minor role 252

Given this role of CCD4 and the constant carotenoid levels in leaves of AtPSY-overexpressing 253

lines we challenged flux compensation by crossing AtPSY-overexpressing lines with the 254

ccd4-1 and the ccd1-1 ccd4-1 mutant lines While seedlings heterozygous for the ccd4-1 255

mutation grew indistinguishable from wild-type plants individuals homozygous for ccd4-1 256

developed light-green cotyledons which quickly bleached and died In one weeks old 257

homozygous seedlings carotenoid and chlorophyll contents were reduced by about 40 258

compared to the wild type and pathway intermediates were not detected (Supplemental Figure 259

9) Apparently formation of xanthophyll breakdown products not formed by cleavage through 260

CCD4 can be tolerated only at physiological pathway fluxes However a further increase 261

through higher PSY abundance is lethal presumably due to the excessive presence of 262

apocarotenoids generated by other mechanisms 263

264

Identification of xanthophyll precursors for apocarotenoid glycosides 265

We took advantage of the altered leaf xanthophyll patterns found in two Arabidopsis 266

cytochrome P450-type carotene hydroxylase mutants CYP97C1 catalyzes the hydroxylation 267

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14

of the α-ionone ring present in α-carotene The respective lut1 mutant is therefore 268

characterized by the absence of lutein and the accumulation of the β-ring mono-hydroxylated 269

α-carotene derivative zeinoxanthin (Kim et al 2009 Table I) The mutant leaves showed 270

about threefold increased levels of 3-oxo-α-ionol (apo1) while other AGs remained 271

unchanged and no additional AGs were detected (Figure 4B see Supplemental Figure 10 for 272

GC-MS traces) This excludes lutein as precursor for AGs identified In contrast the 273

increased levels of β-ring hydroxylated xanthophylls in lut1 leaves suggest zeaxanthin 274

antheraxanthin and zeinoxanthin as precursor explaining enhanced levels of 3-oxo-α-ionol 275

(apo1) 276

The second cytochrome P450-type hydroxylase CYP97A3 catalyzes the hydroxylation of β-277

ring xanthophylls and prefers α-carotene as substrate but also shows some β-carotene 278

hydroxylation activity Its absence defines the lut5 phenotype which accumulates increased 279

levels of α-carotene accompanied by an almost equivalent reduction of β-carotene In 280

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15

addition epoxy-xanthophylls like violaxanthin and neoxanthin are reduced (Kim and 281

DellaPenna 2006) In agreement with the suggested origin of 3-hydroxy-56-epoxy-β-ionone 282

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) from epoxy-xanthophylls (Figure 3) leaves of 283

lut5 had strongly reduced levels of these two AGs while those with a suggested origin from 284

hydroxylated xanthophylls decreased only slightly Furthermore both epoxy-xanthophyll 285

derived apocarotenoids decreased proportionally which is in favor of the secondary formation 286

of 6-hydroxy-3-oxo-α-ionone (apo4) from 3-hydroxy-56-epoxy-β-ionone (apo3) 287

288

Analysis of apocarotenoids in roots 289

AGs were also analyzed in roots which accumulate high amounts of β-carotene in response to 290

AtPSY overexpression reflecting low activity of carotene hydroxylases (Maass et al 2009) 291

Although the aglycons of several well-known glycoconjugated precursors were released such 292

as coniferyl alcohol (from coniferin Lewis and Yamamoto 1990) and indol-3-acetonitril 293

(from brassicin Normanly and Bartel 1999 see Supplemental Figure 11) we could not 294

detect any AGs neither in wild-type nor in AtPSY-overexpressing roots Given the xanthophyll 295

origin of the AGs identified this may be attributed to the much lower xanthophyll abundance 296

in roots than in leaves This is contrasted by the presence of long-chain free β-apocarotenals 297

in roots which were up to 50-fold higher in AtPSY-overexpressing lines compared to the wild 298

type (Figure 5) As already mentioned above these were not increased in leaves in response to 299

increased pathway fluxes indicating different mechanisms operating in both tissues 300

301

302

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16

DISCUSSION 303

Compensatory responses towards increased carotenoid flux in Arabidopsis leaves 304

The carotenoid pathway capacity in Arabidopsis leaves is increased in response to the 305

overexpression of the rate-limiting enzyme PSY This is not at all evident from carotenoid 306

levels but can be shown in derived non-green cells like calli and roots (Maass et al 2009) 307

Alternatively phytoene accumulation upon NFZ inhibition can be used as a readout in leaves 308

because most carotenoid turnover apparently and conceivably happens downstream of 309

phytoene This revealed a doubling of phytoene amounts in AtPSY-overexpressing lines 310

compared to wild-type leaves within four hours illumination with control light intensities 311

(Figure 1) and is further confirmed by in vitro measurements of PSY enzyme activity with 312

isolated plastid membranes Using these data it can be estimated that wild-type leaf carotenoid 313

homeostasis entails the de novo synthesis of about 14 of the carotenoids present (or 04 microg 314

mg DW-1) during a 16 hours light period which is enhanced to 28 in AtPSY-overexpressing 315

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17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

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Supplemental Figure 9

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Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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9

Identification of apocarotenoid glycosides in Arabidopsis leaves 185

An increased pathway flux not leading to higher carotenoid levels suggests increased 186

carotenoid turnover This is thought to occur predominantly at the β-carotene level as 187

revealed by 14CO2 pulse-chase labeling and the abundance of oxidation products derived 188

from β-carotene (Beisel et al 2010 Ramel et al 2012a) In leaves of the wild type and 189

AtPSY-overexpressing lines approximately constant β-carotene steady-state levels were 190

confirmed by measuring 14CO2-incorporation into β-carotene (Supplemental Figure 2A) 191

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10

However levels of long-chain β-carotene degradation products remained similarly largely 192

unchanged as revealed by the LC-MS analyses of β-apo-14rsquo- β-apo-12rsquo- β-apo-10rsquo- β-apo-193

8rsquo-carotenal β-apo-13-carotenone and retinal (Supplemental Figure 2B) Moreover 194

carotenoid-derived short-chain volatiles are not found in Arabidopsis leaves (Aharoni et al 195

2003) with the exception of β-cyclocitral and β-ionone which are reported to be generated 196

upon photooxidative stress (Ramel et al 2012b Havaux 2013) We also did not detect these 197

volatiles by GC-MS analysis neither upon headspace sampling nor by the use of various 198

extraction protocols We therefore resorted to analyzing apocarotenoid glycosides (AGs) 199

which are known from a variety of plants especially grapevine where they contribute to the 200

aroma (Winterhalter and Schreier 1995) 201

An extraction protocol for grapevine was adapted which included the enzymatic liberation of 202

the aglycons from aqueous extracts followed by GC-MS analysis (Mathieu et al 2005) This 203

led to the identification of the following four aglycons in Arabidopsis wild-type leaves (the 204

relative peak area percentage is given in parentheses) 3-oxo-α-ionol (apo1 4 ) 3-oxo-α-205

ionone (apo2 3 ) 3-hydroxy-56-epoxy-β-ionone (apo3 80 ) and 6-hydroxy-3-oxo-α-206

ionone (apo4 13 ) Three of these AGs are also identified in grapevine leaf extracts (variety 207

Muumlller-Thurgau) The GC-MS traces representing undigested and glycosidase-treated leaf 208

extracts are shown in Figure 2 Details on the identification of these compounds are shown in 209

Supplemental Figure 3-6 and their characteristics are summarized in Supplemental Table I 210

Xanthophylls appear as the likely precursors for the aglycons identified possible precursor-211

product relationships are shown in Figure 3 The non-hydroxylated apocarotenoid 3-oxo-α-212

ionone (apo2) is probably formed from 3-oxo-α-ionol (apo1) upon oxidation of the hydroxyl 213

group following deglycosylation Direct precursors for 3-oxo-α-ionol (apo1) may be α-ring 214

hydroxylated xanthophylls like lutein and the mono-hydroxylated intermediate α-215

cryptoxanthin Alternatively β-ring hydroxylated xanthophylls like zeaxanthin 216

antheraxanthin and the intermediates β-cryptoxanthin and zeinoxanthin might also serve as 217

precursors requiring β- to ε-ring conversion upon enzymatic liberation this being supported 218

by observations in grapevine (Mathieu et al 2009) 6-Hydroxy-3-oxo-α-ionone (apo4) 219

probably represents a derivative of 3-hydroxy-56-epoxy-β-ionone (apo3) formed upon 220

reduction of the epoxy to a hydroxyl group (Enzell 1985) 3-hydroxy-56-epoxy-β-ionone 221

(apo3) can be formed from epoxy-xanthophylls thus antheraxantin violaxanthin and 222

neoxanthin 223

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11

Interestingly the relative quantification of AGs revealed higher levels in leaves of AtPSY-224

overexpressing lines than in wild-type leaves which correlates with the increased pathway 225

flux determined above (Figure 2 GC-MS chromatograms in Supplemental Figure 7) 226

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12

Hydroxy-xanthophyll derived apocarotenoids (apo1 and apo2) increased about 5-fold and 227

those derived from epoxy-xanthophylls (apo3 and apo4) increased about threefold 228

Considering the reported light stress-induced formation of β-cyclocitral and other carotenoid 229

breakdown products (Ramel et al 2012b) we further examined a possibly increased 230

apocarotenoid glycosylation under high-light stress However both wild-type leaves as well 231

as those from the AtPSY-overexpressing line showed no significant changes in their 232

apocarotenoid aglycon levels after four hours illumination with 1500 micromol photons m-2s-1 233

234

Involvement of enzymatic carotenoid breakdown in apocarotenoid aglycon formation 235

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13

The AGs identified in this work and most of those identified by others in Vitis Boronia and 236

various fruits exhibit a length of 13 carbon atoms (Winterhalter and Skouroumounis 1997 237

Mendes-Pinto 2009 Cooper et al 2011) AGs with various chain lengths would be expected 238

in case of non-enzymatic carotenoid cleavage In order to determine the contribution of 239

enzymatic cleavage we took advantage of Arabidopsis lines deficient in the carotenoid 240

cleavage enzymes CCD1 and CCD4 (Gonzalez-Jorge et al 2013) which exhibit a broad 241

substrate specificity (Bruno et al 2015 Auldridge et al 2006 Vogel et al 2008) The 242

carotenoid levels in leaves from four week old plants of ccd4-1 and a ccd1-1 ccd4-1 double 243

mutant were similar to the wild type (see Table I) However leaves from both the ccd4-1 and 244

the ccd1-1 ccd4-1 mutant showed strongly reduced levels of all AGs with major reductions in 245

3-hydroxy-56-epoxy-β-ionone (apo3) 6-hydroxy-3-oxo-α-ionone (apo4) and 3-oxo-α-ionol 246

(apo1 Figure 4 see Supplemental Figure 8 for GC-MS traces) With 6-hydroxy-3-oxo-α-247

ionone (apo4) as an exception there was no significant difference in AG levels comparing the 248

single and double mutant lines (p gt 025) The residual presence of apocarotenoid aglycons in 249

ccd1-1 ccd4-1 leaves thus suggests additional mechanisms yielding the same cleavage 250

products These results indicate a predominantly enzymatic origin of AGs with a major 251

contribution of CCD4 while CCD1 plays a minor role 252

Given this role of CCD4 and the constant carotenoid levels in leaves of AtPSY-overexpressing 253

lines we challenged flux compensation by crossing AtPSY-overexpressing lines with the 254

ccd4-1 and the ccd1-1 ccd4-1 mutant lines While seedlings heterozygous for the ccd4-1 255

mutation grew indistinguishable from wild-type plants individuals homozygous for ccd4-1 256

developed light-green cotyledons which quickly bleached and died In one weeks old 257

homozygous seedlings carotenoid and chlorophyll contents were reduced by about 40 258

compared to the wild type and pathway intermediates were not detected (Supplemental Figure 259

9) Apparently formation of xanthophyll breakdown products not formed by cleavage through 260

CCD4 can be tolerated only at physiological pathway fluxes However a further increase 261

through higher PSY abundance is lethal presumably due to the excessive presence of 262

apocarotenoids generated by other mechanisms 263

264

Identification of xanthophyll precursors for apocarotenoid glycosides 265

We took advantage of the altered leaf xanthophyll patterns found in two Arabidopsis 266

cytochrome P450-type carotene hydroxylase mutants CYP97C1 catalyzes the hydroxylation 267

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14

of the α-ionone ring present in α-carotene The respective lut1 mutant is therefore 268

characterized by the absence of lutein and the accumulation of the β-ring mono-hydroxylated 269

α-carotene derivative zeinoxanthin (Kim et al 2009 Table I) The mutant leaves showed 270

about threefold increased levels of 3-oxo-α-ionol (apo1) while other AGs remained 271

unchanged and no additional AGs were detected (Figure 4B see Supplemental Figure 10 for 272

GC-MS traces) This excludes lutein as precursor for AGs identified In contrast the 273

increased levels of β-ring hydroxylated xanthophylls in lut1 leaves suggest zeaxanthin 274

antheraxanthin and zeinoxanthin as precursor explaining enhanced levels of 3-oxo-α-ionol 275

(apo1) 276

The second cytochrome P450-type hydroxylase CYP97A3 catalyzes the hydroxylation of β-277

ring xanthophylls and prefers α-carotene as substrate but also shows some β-carotene 278

hydroxylation activity Its absence defines the lut5 phenotype which accumulates increased 279

levels of α-carotene accompanied by an almost equivalent reduction of β-carotene In 280

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15

addition epoxy-xanthophylls like violaxanthin and neoxanthin are reduced (Kim and 281

DellaPenna 2006) In agreement with the suggested origin of 3-hydroxy-56-epoxy-β-ionone 282

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) from epoxy-xanthophylls (Figure 3) leaves of 283

lut5 had strongly reduced levels of these two AGs while those with a suggested origin from 284

hydroxylated xanthophylls decreased only slightly Furthermore both epoxy-xanthophyll 285

derived apocarotenoids decreased proportionally which is in favor of the secondary formation 286

of 6-hydroxy-3-oxo-α-ionone (apo4) from 3-hydroxy-56-epoxy-β-ionone (apo3) 287

288

Analysis of apocarotenoids in roots 289

AGs were also analyzed in roots which accumulate high amounts of β-carotene in response to 290

AtPSY overexpression reflecting low activity of carotene hydroxylases (Maass et al 2009) 291

Although the aglycons of several well-known glycoconjugated precursors were released such 292

as coniferyl alcohol (from coniferin Lewis and Yamamoto 1990) and indol-3-acetonitril 293

(from brassicin Normanly and Bartel 1999 see Supplemental Figure 11) we could not 294

detect any AGs neither in wild-type nor in AtPSY-overexpressing roots Given the xanthophyll 295

origin of the AGs identified this may be attributed to the much lower xanthophyll abundance 296

in roots than in leaves This is contrasted by the presence of long-chain free β-apocarotenals 297

in roots which were up to 50-fold higher in AtPSY-overexpressing lines compared to the wild 298

type (Figure 5) As already mentioned above these were not increased in leaves in response to 299

increased pathway fluxes indicating different mechanisms operating in both tissues 300

301

302

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16

DISCUSSION 303

Compensatory responses towards increased carotenoid flux in Arabidopsis leaves 304

The carotenoid pathway capacity in Arabidopsis leaves is increased in response to the 305

overexpression of the rate-limiting enzyme PSY This is not at all evident from carotenoid 306

levels but can be shown in derived non-green cells like calli and roots (Maass et al 2009) 307

Alternatively phytoene accumulation upon NFZ inhibition can be used as a readout in leaves 308

because most carotenoid turnover apparently and conceivably happens downstream of 309

phytoene This revealed a doubling of phytoene amounts in AtPSY-overexpressing lines 310

compared to wild-type leaves within four hours illumination with control light intensities 311

(Figure 1) and is further confirmed by in vitro measurements of PSY enzyme activity with 312

isolated plastid membranes Using these data it can be estimated that wild-type leaf carotenoid 313

homeostasis entails the de novo synthesis of about 14 of the carotenoids present (or 04 microg 314

mg DW-1) during a 16 hours light period which is enhanced to 28 in AtPSY-overexpressing 315

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17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

20

40

60

80

100

88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

1 2

3

4

98

20

40

60

80

100

20

40

60

80

100

Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

0

10

20

30

40

50

60

70

80

90

100

88 90 92 94 96 98 100 102Time (min)

0

10

20

30

40

50

60

70

80

90

100

A undigested

B digested1

2

D

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

13703

18006

12405

9103

1030677046503 15213

18609

C F

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

15507

13013

1281477046404 1010819115

E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 10: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

10

However levels of long-chain β-carotene degradation products remained similarly largely 192

unchanged as revealed by the LC-MS analyses of β-apo-14rsquo- β-apo-12rsquo- β-apo-10rsquo- β-apo-193

8rsquo-carotenal β-apo-13-carotenone and retinal (Supplemental Figure 2B) Moreover 194

carotenoid-derived short-chain volatiles are not found in Arabidopsis leaves (Aharoni et al 195

2003) with the exception of β-cyclocitral and β-ionone which are reported to be generated 196

upon photooxidative stress (Ramel et al 2012b Havaux 2013) We also did not detect these 197

volatiles by GC-MS analysis neither upon headspace sampling nor by the use of various 198

extraction protocols We therefore resorted to analyzing apocarotenoid glycosides (AGs) 199

which are known from a variety of plants especially grapevine where they contribute to the 200

aroma (Winterhalter and Schreier 1995) 201

An extraction protocol for grapevine was adapted which included the enzymatic liberation of 202

the aglycons from aqueous extracts followed by GC-MS analysis (Mathieu et al 2005) This 203

led to the identification of the following four aglycons in Arabidopsis wild-type leaves (the 204

relative peak area percentage is given in parentheses) 3-oxo-α-ionol (apo1 4 ) 3-oxo-α-205

ionone (apo2 3 ) 3-hydroxy-56-epoxy-β-ionone (apo3 80 ) and 6-hydroxy-3-oxo-α-206

ionone (apo4 13 ) Three of these AGs are also identified in grapevine leaf extracts (variety 207

Muumlller-Thurgau) The GC-MS traces representing undigested and glycosidase-treated leaf 208

extracts are shown in Figure 2 Details on the identification of these compounds are shown in 209

Supplemental Figure 3-6 and their characteristics are summarized in Supplemental Table I 210

Xanthophylls appear as the likely precursors for the aglycons identified possible precursor-211

product relationships are shown in Figure 3 The non-hydroxylated apocarotenoid 3-oxo-α-212

ionone (apo2) is probably formed from 3-oxo-α-ionol (apo1) upon oxidation of the hydroxyl 213

group following deglycosylation Direct precursors for 3-oxo-α-ionol (apo1) may be α-ring 214

hydroxylated xanthophylls like lutein and the mono-hydroxylated intermediate α-215

cryptoxanthin Alternatively β-ring hydroxylated xanthophylls like zeaxanthin 216

antheraxanthin and the intermediates β-cryptoxanthin and zeinoxanthin might also serve as 217

precursors requiring β- to ε-ring conversion upon enzymatic liberation this being supported 218

by observations in grapevine (Mathieu et al 2009) 6-Hydroxy-3-oxo-α-ionone (apo4) 219

probably represents a derivative of 3-hydroxy-56-epoxy-β-ionone (apo3) formed upon 220

reduction of the epoxy to a hydroxyl group (Enzell 1985) 3-hydroxy-56-epoxy-β-ionone 221

(apo3) can be formed from epoxy-xanthophylls thus antheraxantin violaxanthin and 222

neoxanthin 223

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11

Interestingly the relative quantification of AGs revealed higher levels in leaves of AtPSY-224

overexpressing lines than in wild-type leaves which correlates with the increased pathway 225

flux determined above (Figure 2 GC-MS chromatograms in Supplemental Figure 7) 226

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12

Hydroxy-xanthophyll derived apocarotenoids (apo1 and apo2) increased about 5-fold and 227

those derived from epoxy-xanthophylls (apo3 and apo4) increased about threefold 228

Considering the reported light stress-induced formation of β-cyclocitral and other carotenoid 229

breakdown products (Ramel et al 2012b) we further examined a possibly increased 230

apocarotenoid glycosylation under high-light stress However both wild-type leaves as well 231

as those from the AtPSY-overexpressing line showed no significant changes in their 232

apocarotenoid aglycon levels after four hours illumination with 1500 micromol photons m-2s-1 233

234

Involvement of enzymatic carotenoid breakdown in apocarotenoid aglycon formation 235

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13

The AGs identified in this work and most of those identified by others in Vitis Boronia and 236

various fruits exhibit a length of 13 carbon atoms (Winterhalter and Skouroumounis 1997 237

Mendes-Pinto 2009 Cooper et al 2011) AGs with various chain lengths would be expected 238

in case of non-enzymatic carotenoid cleavage In order to determine the contribution of 239

enzymatic cleavage we took advantage of Arabidopsis lines deficient in the carotenoid 240

cleavage enzymes CCD1 and CCD4 (Gonzalez-Jorge et al 2013) which exhibit a broad 241

substrate specificity (Bruno et al 2015 Auldridge et al 2006 Vogel et al 2008) The 242

carotenoid levels in leaves from four week old plants of ccd4-1 and a ccd1-1 ccd4-1 double 243

mutant were similar to the wild type (see Table I) However leaves from both the ccd4-1 and 244

the ccd1-1 ccd4-1 mutant showed strongly reduced levels of all AGs with major reductions in 245

3-hydroxy-56-epoxy-β-ionone (apo3) 6-hydroxy-3-oxo-α-ionone (apo4) and 3-oxo-α-ionol 246

(apo1 Figure 4 see Supplemental Figure 8 for GC-MS traces) With 6-hydroxy-3-oxo-α-247

ionone (apo4) as an exception there was no significant difference in AG levels comparing the 248

single and double mutant lines (p gt 025) The residual presence of apocarotenoid aglycons in 249

ccd1-1 ccd4-1 leaves thus suggests additional mechanisms yielding the same cleavage 250

products These results indicate a predominantly enzymatic origin of AGs with a major 251

contribution of CCD4 while CCD1 plays a minor role 252

Given this role of CCD4 and the constant carotenoid levels in leaves of AtPSY-overexpressing 253

lines we challenged flux compensation by crossing AtPSY-overexpressing lines with the 254

ccd4-1 and the ccd1-1 ccd4-1 mutant lines While seedlings heterozygous for the ccd4-1 255

mutation grew indistinguishable from wild-type plants individuals homozygous for ccd4-1 256

developed light-green cotyledons which quickly bleached and died In one weeks old 257

homozygous seedlings carotenoid and chlorophyll contents were reduced by about 40 258

compared to the wild type and pathway intermediates were not detected (Supplemental Figure 259

9) Apparently formation of xanthophyll breakdown products not formed by cleavage through 260

CCD4 can be tolerated only at physiological pathway fluxes However a further increase 261

through higher PSY abundance is lethal presumably due to the excessive presence of 262

apocarotenoids generated by other mechanisms 263

264

Identification of xanthophyll precursors for apocarotenoid glycosides 265

We took advantage of the altered leaf xanthophyll patterns found in two Arabidopsis 266

cytochrome P450-type carotene hydroxylase mutants CYP97C1 catalyzes the hydroxylation 267

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14

of the α-ionone ring present in α-carotene The respective lut1 mutant is therefore 268

characterized by the absence of lutein and the accumulation of the β-ring mono-hydroxylated 269

α-carotene derivative zeinoxanthin (Kim et al 2009 Table I) The mutant leaves showed 270

about threefold increased levels of 3-oxo-α-ionol (apo1) while other AGs remained 271

unchanged and no additional AGs were detected (Figure 4B see Supplemental Figure 10 for 272

GC-MS traces) This excludes lutein as precursor for AGs identified In contrast the 273

increased levels of β-ring hydroxylated xanthophylls in lut1 leaves suggest zeaxanthin 274

antheraxanthin and zeinoxanthin as precursor explaining enhanced levels of 3-oxo-α-ionol 275

(apo1) 276

The second cytochrome P450-type hydroxylase CYP97A3 catalyzes the hydroxylation of β-277

ring xanthophylls and prefers α-carotene as substrate but also shows some β-carotene 278

hydroxylation activity Its absence defines the lut5 phenotype which accumulates increased 279

levels of α-carotene accompanied by an almost equivalent reduction of β-carotene In 280

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15

addition epoxy-xanthophylls like violaxanthin and neoxanthin are reduced (Kim and 281

DellaPenna 2006) In agreement with the suggested origin of 3-hydroxy-56-epoxy-β-ionone 282

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) from epoxy-xanthophylls (Figure 3) leaves of 283

lut5 had strongly reduced levels of these two AGs while those with a suggested origin from 284

hydroxylated xanthophylls decreased only slightly Furthermore both epoxy-xanthophyll 285

derived apocarotenoids decreased proportionally which is in favor of the secondary formation 286

of 6-hydroxy-3-oxo-α-ionone (apo4) from 3-hydroxy-56-epoxy-β-ionone (apo3) 287

288

Analysis of apocarotenoids in roots 289

AGs were also analyzed in roots which accumulate high amounts of β-carotene in response to 290

AtPSY overexpression reflecting low activity of carotene hydroxylases (Maass et al 2009) 291

Although the aglycons of several well-known glycoconjugated precursors were released such 292

as coniferyl alcohol (from coniferin Lewis and Yamamoto 1990) and indol-3-acetonitril 293

(from brassicin Normanly and Bartel 1999 see Supplemental Figure 11) we could not 294

detect any AGs neither in wild-type nor in AtPSY-overexpressing roots Given the xanthophyll 295

origin of the AGs identified this may be attributed to the much lower xanthophyll abundance 296

in roots than in leaves This is contrasted by the presence of long-chain free β-apocarotenals 297

in roots which were up to 50-fold higher in AtPSY-overexpressing lines compared to the wild 298

type (Figure 5) As already mentioned above these were not increased in leaves in response to 299

increased pathway fluxes indicating different mechanisms operating in both tissues 300

301

302

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16

DISCUSSION 303

Compensatory responses towards increased carotenoid flux in Arabidopsis leaves 304

The carotenoid pathway capacity in Arabidopsis leaves is increased in response to the 305

overexpression of the rate-limiting enzyme PSY This is not at all evident from carotenoid 306

levels but can be shown in derived non-green cells like calli and roots (Maass et al 2009) 307

Alternatively phytoene accumulation upon NFZ inhibition can be used as a readout in leaves 308

because most carotenoid turnover apparently and conceivably happens downstream of 309

phytoene This revealed a doubling of phytoene amounts in AtPSY-overexpressing lines 310

compared to wild-type leaves within four hours illumination with control light intensities 311

(Figure 1) and is further confirmed by in vitro measurements of PSY enzyme activity with 312

isolated plastid membranes Using these data it can be estimated that wild-type leaf carotenoid 313

homeostasis entails the de novo synthesis of about 14 of the carotenoids present (or 04 microg 314

mg DW-1) during a 16 hours light period which is enhanced to 28 in AtPSY-overexpressing 315

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17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

20

40

60

80

100

88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

1 2

3

4

98

20

40

60

80

100

20

40

60

80

100

Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

0

10

20

30

40

50

60

70

80

90

100

88 90 92 94 96 98 100 102Time (min)

0

10

20

30

40

50

60

70

80

90

100

A undigested

B digested1

2

D

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

13703

18006

12405

9103

1030677046503 15213

18609

C F

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

15507

13013

1281477046404 1010819115

E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 11: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

11

Interestingly the relative quantification of AGs revealed higher levels in leaves of AtPSY-224

overexpressing lines than in wild-type leaves which correlates with the increased pathway 225

flux determined above (Figure 2 GC-MS chromatograms in Supplemental Figure 7) 226

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12

Hydroxy-xanthophyll derived apocarotenoids (apo1 and apo2) increased about 5-fold and 227

those derived from epoxy-xanthophylls (apo3 and apo4) increased about threefold 228

Considering the reported light stress-induced formation of β-cyclocitral and other carotenoid 229

breakdown products (Ramel et al 2012b) we further examined a possibly increased 230

apocarotenoid glycosylation under high-light stress However both wild-type leaves as well 231

as those from the AtPSY-overexpressing line showed no significant changes in their 232

apocarotenoid aglycon levels after four hours illumination with 1500 micromol photons m-2s-1 233

234

Involvement of enzymatic carotenoid breakdown in apocarotenoid aglycon formation 235

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13

The AGs identified in this work and most of those identified by others in Vitis Boronia and 236

various fruits exhibit a length of 13 carbon atoms (Winterhalter and Skouroumounis 1997 237

Mendes-Pinto 2009 Cooper et al 2011) AGs with various chain lengths would be expected 238

in case of non-enzymatic carotenoid cleavage In order to determine the contribution of 239

enzymatic cleavage we took advantage of Arabidopsis lines deficient in the carotenoid 240

cleavage enzymes CCD1 and CCD4 (Gonzalez-Jorge et al 2013) which exhibit a broad 241

substrate specificity (Bruno et al 2015 Auldridge et al 2006 Vogel et al 2008) The 242

carotenoid levels in leaves from four week old plants of ccd4-1 and a ccd1-1 ccd4-1 double 243

mutant were similar to the wild type (see Table I) However leaves from both the ccd4-1 and 244

the ccd1-1 ccd4-1 mutant showed strongly reduced levels of all AGs with major reductions in 245

3-hydroxy-56-epoxy-β-ionone (apo3) 6-hydroxy-3-oxo-α-ionone (apo4) and 3-oxo-α-ionol 246

(apo1 Figure 4 see Supplemental Figure 8 for GC-MS traces) With 6-hydroxy-3-oxo-α-247

ionone (apo4) as an exception there was no significant difference in AG levels comparing the 248

single and double mutant lines (p gt 025) The residual presence of apocarotenoid aglycons in 249

ccd1-1 ccd4-1 leaves thus suggests additional mechanisms yielding the same cleavage 250

products These results indicate a predominantly enzymatic origin of AGs with a major 251

contribution of CCD4 while CCD1 plays a minor role 252

Given this role of CCD4 and the constant carotenoid levels in leaves of AtPSY-overexpressing 253

lines we challenged flux compensation by crossing AtPSY-overexpressing lines with the 254

ccd4-1 and the ccd1-1 ccd4-1 mutant lines While seedlings heterozygous for the ccd4-1 255

mutation grew indistinguishable from wild-type plants individuals homozygous for ccd4-1 256

developed light-green cotyledons which quickly bleached and died In one weeks old 257

homozygous seedlings carotenoid and chlorophyll contents were reduced by about 40 258

compared to the wild type and pathway intermediates were not detected (Supplemental Figure 259

9) Apparently formation of xanthophyll breakdown products not formed by cleavage through 260

CCD4 can be tolerated only at physiological pathway fluxes However a further increase 261

through higher PSY abundance is lethal presumably due to the excessive presence of 262

apocarotenoids generated by other mechanisms 263

264

Identification of xanthophyll precursors for apocarotenoid glycosides 265

We took advantage of the altered leaf xanthophyll patterns found in two Arabidopsis 266

cytochrome P450-type carotene hydroxylase mutants CYP97C1 catalyzes the hydroxylation 267

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14

of the α-ionone ring present in α-carotene The respective lut1 mutant is therefore 268

characterized by the absence of lutein and the accumulation of the β-ring mono-hydroxylated 269

α-carotene derivative zeinoxanthin (Kim et al 2009 Table I) The mutant leaves showed 270

about threefold increased levels of 3-oxo-α-ionol (apo1) while other AGs remained 271

unchanged and no additional AGs were detected (Figure 4B see Supplemental Figure 10 for 272

GC-MS traces) This excludes lutein as precursor for AGs identified In contrast the 273

increased levels of β-ring hydroxylated xanthophylls in lut1 leaves suggest zeaxanthin 274

antheraxanthin and zeinoxanthin as precursor explaining enhanced levels of 3-oxo-α-ionol 275

(apo1) 276

The second cytochrome P450-type hydroxylase CYP97A3 catalyzes the hydroxylation of β-277

ring xanthophylls and prefers α-carotene as substrate but also shows some β-carotene 278

hydroxylation activity Its absence defines the lut5 phenotype which accumulates increased 279

levels of α-carotene accompanied by an almost equivalent reduction of β-carotene In 280

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15

addition epoxy-xanthophylls like violaxanthin and neoxanthin are reduced (Kim and 281

DellaPenna 2006) In agreement with the suggested origin of 3-hydroxy-56-epoxy-β-ionone 282

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) from epoxy-xanthophylls (Figure 3) leaves of 283

lut5 had strongly reduced levels of these two AGs while those with a suggested origin from 284

hydroxylated xanthophylls decreased only slightly Furthermore both epoxy-xanthophyll 285

derived apocarotenoids decreased proportionally which is in favor of the secondary formation 286

of 6-hydroxy-3-oxo-α-ionone (apo4) from 3-hydroxy-56-epoxy-β-ionone (apo3) 287

288

Analysis of apocarotenoids in roots 289

AGs were also analyzed in roots which accumulate high amounts of β-carotene in response to 290

AtPSY overexpression reflecting low activity of carotene hydroxylases (Maass et al 2009) 291

Although the aglycons of several well-known glycoconjugated precursors were released such 292

as coniferyl alcohol (from coniferin Lewis and Yamamoto 1990) and indol-3-acetonitril 293

(from brassicin Normanly and Bartel 1999 see Supplemental Figure 11) we could not 294

detect any AGs neither in wild-type nor in AtPSY-overexpressing roots Given the xanthophyll 295

origin of the AGs identified this may be attributed to the much lower xanthophyll abundance 296

in roots than in leaves This is contrasted by the presence of long-chain free β-apocarotenals 297

in roots which were up to 50-fold higher in AtPSY-overexpressing lines compared to the wild 298

type (Figure 5) As already mentioned above these were not increased in leaves in response to 299

increased pathway fluxes indicating different mechanisms operating in both tissues 300

301

302

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16

DISCUSSION 303

Compensatory responses towards increased carotenoid flux in Arabidopsis leaves 304

The carotenoid pathway capacity in Arabidopsis leaves is increased in response to the 305

overexpression of the rate-limiting enzyme PSY This is not at all evident from carotenoid 306

levels but can be shown in derived non-green cells like calli and roots (Maass et al 2009) 307

Alternatively phytoene accumulation upon NFZ inhibition can be used as a readout in leaves 308

because most carotenoid turnover apparently and conceivably happens downstream of 309

phytoene This revealed a doubling of phytoene amounts in AtPSY-overexpressing lines 310

compared to wild-type leaves within four hours illumination with control light intensities 311

(Figure 1) and is further confirmed by in vitro measurements of PSY enzyme activity with 312

isolated plastid membranes Using these data it can be estimated that wild-type leaf carotenoid 313

homeostasis entails the de novo synthesis of about 14 of the carotenoids present (or 04 microg 314

mg DW-1) during a 16 hours light period which is enhanced to 28 in AtPSY-overexpressing 315

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17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

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Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

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pg a

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Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

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89 90 91 92 93 94 95 960

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Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

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Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

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O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

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A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Rel

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Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Rel

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Time (min)86 88 90 92 94 96 98

A wild type (Col)

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Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

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[microg

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-1]

Carotenoids

Supplemental Figure 9

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Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Rel

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88 90 92 94 96 98 100 102Time (min)

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E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 12: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

12

Hydroxy-xanthophyll derived apocarotenoids (apo1 and apo2) increased about 5-fold and 227

those derived from epoxy-xanthophylls (apo3 and apo4) increased about threefold 228

Considering the reported light stress-induced formation of β-cyclocitral and other carotenoid 229

breakdown products (Ramel et al 2012b) we further examined a possibly increased 230

apocarotenoid glycosylation under high-light stress However both wild-type leaves as well 231

as those from the AtPSY-overexpressing line showed no significant changes in their 232

apocarotenoid aglycon levels after four hours illumination with 1500 micromol photons m-2s-1 233

234

Involvement of enzymatic carotenoid breakdown in apocarotenoid aglycon formation 235

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13

The AGs identified in this work and most of those identified by others in Vitis Boronia and 236

various fruits exhibit a length of 13 carbon atoms (Winterhalter and Skouroumounis 1997 237

Mendes-Pinto 2009 Cooper et al 2011) AGs with various chain lengths would be expected 238

in case of non-enzymatic carotenoid cleavage In order to determine the contribution of 239

enzymatic cleavage we took advantage of Arabidopsis lines deficient in the carotenoid 240

cleavage enzymes CCD1 and CCD4 (Gonzalez-Jorge et al 2013) which exhibit a broad 241

substrate specificity (Bruno et al 2015 Auldridge et al 2006 Vogel et al 2008) The 242

carotenoid levels in leaves from four week old plants of ccd4-1 and a ccd1-1 ccd4-1 double 243

mutant were similar to the wild type (see Table I) However leaves from both the ccd4-1 and 244

the ccd1-1 ccd4-1 mutant showed strongly reduced levels of all AGs with major reductions in 245

3-hydroxy-56-epoxy-β-ionone (apo3) 6-hydroxy-3-oxo-α-ionone (apo4) and 3-oxo-α-ionol 246

(apo1 Figure 4 see Supplemental Figure 8 for GC-MS traces) With 6-hydroxy-3-oxo-α-247

ionone (apo4) as an exception there was no significant difference in AG levels comparing the 248

single and double mutant lines (p gt 025) The residual presence of apocarotenoid aglycons in 249

ccd1-1 ccd4-1 leaves thus suggests additional mechanisms yielding the same cleavage 250

products These results indicate a predominantly enzymatic origin of AGs with a major 251

contribution of CCD4 while CCD1 plays a minor role 252

Given this role of CCD4 and the constant carotenoid levels in leaves of AtPSY-overexpressing 253

lines we challenged flux compensation by crossing AtPSY-overexpressing lines with the 254

ccd4-1 and the ccd1-1 ccd4-1 mutant lines While seedlings heterozygous for the ccd4-1 255

mutation grew indistinguishable from wild-type plants individuals homozygous for ccd4-1 256

developed light-green cotyledons which quickly bleached and died In one weeks old 257

homozygous seedlings carotenoid and chlorophyll contents were reduced by about 40 258

compared to the wild type and pathway intermediates were not detected (Supplemental Figure 259

9) Apparently formation of xanthophyll breakdown products not formed by cleavage through 260

CCD4 can be tolerated only at physiological pathway fluxes However a further increase 261

through higher PSY abundance is lethal presumably due to the excessive presence of 262

apocarotenoids generated by other mechanisms 263

264

Identification of xanthophyll precursors for apocarotenoid glycosides 265

We took advantage of the altered leaf xanthophyll patterns found in two Arabidopsis 266

cytochrome P450-type carotene hydroxylase mutants CYP97C1 catalyzes the hydroxylation 267

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14

of the α-ionone ring present in α-carotene The respective lut1 mutant is therefore 268

characterized by the absence of lutein and the accumulation of the β-ring mono-hydroxylated 269

α-carotene derivative zeinoxanthin (Kim et al 2009 Table I) The mutant leaves showed 270

about threefold increased levels of 3-oxo-α-ionol (apo1) while other AGs remained 271

unchanged and no additional AGs were detected (Figure 4B see Supplemental Figure 10 for 272

GC-MS traces) This excludes lutein as precursor for AGs identified In contrast the 273

increased levels of β-ring hydroxylated xanthophylls in lut1 leaves suggest zeaxanthin 274

antheraxanthin and zeinoxanthin as precursor explaining enhanced levels of 3-oxo-α-ionol 275

(apo1) 276

The second cytochrome P450-type hydroxylase CYP97A3 catalyzes the hydroxylation of β-277

ring xanthophylls and prefers α-carotene as substrate but also shows some β-carotene 278

hydroxylation activity Its absence defines the lut5 phenotype which accumulates increased 279

levels of α-carotene accompanied by an almost equivalent reduction of β-carotene In 280

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15

addition epoxy-xanthophylls like violaxanthin and neoxanthin are reduced (Kim and 281

DellaPenna 2006) In agreement with the suggested origin of 3-hydroxy-56-epoxy-β-ionone 282

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) from epoxy-xanthophylls (Figure 3) leaves of 283

lut5 had strongly reduced levels of these two AGs while those with a suggested origin from 284

hydroxylated xanthophylls decreased only slightly Furthermore both epoxy-xanthophyll 285

derived apocarotenoids decreased proportionally which is in favor of the secondary formation 286

of 6-hydroxy-3-oxo-α-ionone (apo4) from 3-hydroxy-56-epoxy-β-ionone (apo3) 287

288

Analysis of apocarotenoids in roots 289

AGs were also analyzed in roots which accumulate high amounts of β-carotene in response to 290

AtPSY overexpression reflecting low activity of carotene hydroxylases (Maass et al 2009) 291

Although the aglycons of several well-known glycoconjugated precursors were released such 292

as coniferyl alcohol (from coniferin Lewis and Yamamoto 1990) and indol-3-acetonitril 293

(from brassicin Normanly and Bartel 1999 see Supplemental Figure 11) we could not 294

detect any AGs neither in wild-type nor in AtPSY-overexpressing roots Given the xanthophyll 295

origin of the AGs identified this may be attributed to the much lower xanthophyll abundance 296

in roots than in leaves This is contrasted by the presence of long-chain free β-apocarotenals 297

in roots which were up to 50-fold higher in AtPSY-overexpressing lines compared to the wild 298

type (Figure 5) As already mentioned above these were not increased in leaves in response to 299

increased pathway fluxes indicating different mechanisms operating in both tissues 300

301

302

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16

DISCUSSION 303

Compensatory responses towards increased carotenoid flux in Arabidopsis leaves 304

The carotenoid pathway capacity in Arabidopsis leaves is increased in response to the 305

overexpression of the rate-limiting enzyme PSY This is not at all evident from carotenoid 306

levels but can be shown in derived non-green cells like calli and roots (Maass et al 2009) 307

Alternatively phytoene accumulation upon NFZ inhibition can be used as a readout in leaves 308

because most carotenoid turnover apparently and conceivably happens downstream of 309

phytoene This revealed a doubling of phytoene amounts in AtPSY-overexpressing lines 310

compared to wild-type leaves within four hours illumination with control light intensities 311

(Figure 1) and is further confirmed by in vitro measurements of PSY enzyme activity with 312

isolated plastid membranes Using these data it can be estimated that wild-type leaf carotenoid 313

homeostasis entails the de novo synthesis of about 14 of the carotenoids present (or 04 microg 314

mg DW-1) during a 16 hours light period which is enhanced to 28 in AtPSY-overexpressing 315

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17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

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Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

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Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 13: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

13

The AGs identified in this work and most of those identified by others in Vitis Boronia and 236

various fruits exhibit a length of 13 carbon atoms (Winterhalter and Skouroumounis 1997 237

Mendes-Pinto 2009 Cooper et al 2011) AGs with various chain lengths would be expected 238

in case of non-enzymatic carotenoid cleavage In order to determine the contribution of 239

enzymatic cleavage we took advantage of Arabidopsis lines deficient in the carotenoid 240

cleavage enzymes CCD1 and CCD4 (Gonzalez-Jorge et al 2013) which exhibit a broad 241

substrate specificity (Bruno et al 2015 Auldridge et al 2006 Vogel et al 2008) The 242

carotenoid levels in leaves from four week old plants of ccd4-1 and a ccd1-1 ccd4-1 double 243

mutant were similar to the wild type (see Table I) However leaves from both the ccd4-1 and 244

the ccd1-1 ccd4-1 mutant showed strongly reduced levels of all AGs with major reductions in 245

3-hydroxy-56-epoxy-β-ionone (apo3) 6-hydroxy-3-oxo-α-ionone (apo4) and 3-oxo-α-ionol 246

(apo1 Figure 4 see Supplemental Figure 8 for GC-MS traces) With 6-hydroxy-3-oxo-α-247

ionone (apo4) as an exception there was no significant difference in AG levels comparing the 248

single and double mutant lines (p gt 025) The residual presence of apocarotenoid aglycons in 249

ccd1-1 ccd4-1 leaves thus suggests additional mechanisms yielding the same cleavage 250

products These results indicate a predominantly enzymatic origin of AGs with a major 251

contribution of CCD4 while CCD1 plays a minor role 252

Given this role of CCD4 and the constant carotenoid levels in leaves of AtPSY-overexpressing 253

lines we challenged flux compensation by crossing AtPSY-overexpressing lines with the 254

ccd4-1 and the ccd1-1 ccd4-1 mutant lines While seedlings heterozygous for the ccd4-1 255

mutation grew indistinguishable from wild-type plants individuals homozygous for ccd4-1 256

developed light-green cotyledons which quickly bleached and died In one weeks old 257

homozygous seedlings carotenoid and chlorophyll contents were reduced by about 40 258

compared to the wild type and pathway intermediates were not detected (Supplemental Figure 259

9) Apparently formation of xanthophyll breakdown products not formed by cleavage through 260

CCD4 can be tolerated only at physiological pathway fluxes However a further increase 261

through higher PSY abundance is lethal presumably due to the excessive presence of 262

apocarotenoids generated by other mechanisms 263

264

Identification of xanthophyll precursors for apocarotenoid glycosides 265

We took advantage of the altered leaf xanthophyll patterns found in two Arabidopsis 266

cytochrome P450-type carotene hydroxylase mutants CYP97C1 catalyzes the hydroxylation 267

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14

of the α-ionone ring present in α-carotene The respective lut1 mutant is therefore 268

characterized by the absence of lutein and the accumulation of the β-ring mono-hydroxylated 269

α-carotene derivative zeinoxanthin (Kim et al 2009 Table I) The mutant leaves showed 270

about threefold increased levels of 3-oxo-α-ionol (apo1) while other AGs remained 271

unchanged and no additional AGs were detected (Figure 4B see Supplemental Figure 10 for 272

GC-MS traces) This excludes lutein as precursor for AGs identified In contrast the 273

increased levels of β-ring hydroxylated xanthophylls in lut1 leaves suggest zeaxanthin 274

antheraxanthin and zeinoxanthin as precursor explaining enhanced levels of 3-oxo-α-ionol 275

(apo1) 276

The second cytochrome P450-type hydroxylase CYP97A3 catalyzes the hydroxylation of β-277

ring xanthophylls and prefers α-carotene as substrate but also shows some β-carotene 278

hydroxylation activity Its absence defines the lut5 phenotype which accumulates increased 279

levels of α-carotene accompanied by an almost equivalent reduction of β-carotene In 280

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15

addition epoxy-xanthophylls like violaxanthin and neoxanthin are reduced (Kim and 281

DellaPenna 2006) In agreement with the suggested origin of 3-hydroxy-56-epoxy-β-ionone 282

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) from epoxy-xanthophylls (Figure 3) leaves of 283

lut5 had strongly reduced levels of these two AGs while those with a suggested origin from 284

hydroxylated xanthophylls decreased only slightly Furthermore both epoxy-xanthophyll 285

derived apocarotenoids decreased proportionally which is in favor of the secondary formation 286

of 6-hydroxy-3-oxo-α-ionone (apo4) from 3-hydroxy-56-epoxy-β-ionone (apo3) 287

288

Analysis of apocarotenoids in roots 289

AGs were also analyzed in roots which accumulate high amounts of β-carotene in response to 290

AtPSY overexpression reflecting low activity of carotene hydroxylases (Maass et al 2009) 291

Although the aglycons of several well-known glycoconjugated precursors were released such 292

as coniferyl alcohol (from coniferin Lewis and Yamamoto 1990) and indol-3-acetonitril 293

(from brassicin Normanly and Bartel 1999 see Supplemental Figure 11) we could not 294

detect any AGs neither in wild-type nor in AtPSY-overexpressing roots Given the xanthophyll 295

origin of the AGs identified this may be attributed to the much lower xanthophyll abundance 296

in roots than in leaves This is contrasted by the presence of long-chain free β-apocarotenals 297

in roots which were up to 50-fold higher in AtPSY-overexpressing lines compared to the wild 298

type (Figure 5) As already mentioned above these were not increased in leaves in response to 299

increased pathway fluxes indicating different mechanisms operating in both tissues 300

301

302

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16

DISCUSSION 303

Compensatory responses towards increased carotenoid flux in Arabidopsis leaves 304

The carotenoid pathway capacity in Arabidopsis leaves is increased in response to the 305

overexpression of the rate-limiting enzyme PSY This is not at all evident from carotenoid 306

levels but can be shown in derived non-green cells like calli and roots (Maass et al 2009) 307

Alternatively phytoene accumulation upon NFZ inhibition can be used as a readout in leaves 308

because most carotenoid turnover apparently and conceivably happens downstream of 309

phytoene This revealed a doubling of phytoene amounts in AtPSY-overexpressing lines 310

compared to wild-type leaves within four hours illumination with control light intensities 311

(Figure 1) and is further confirmed by in vitro measurements of PSY enzyme activity with 312

isolated plastid membranes Using these data it can be estimated that wild-type leaf carotenoid 313

homeostasis entails the de novo synthesis of about 14 of the carotenoids present (or 04 microg 314

mg DW-1) during a 16 hours light period which is enhanced to 28 in AtPSY-overexpressing 315

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17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

20

40

60

80

100

88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

1 2

3

4

98

20

40

60

80

100

20

40

60

80

100

Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

0

10

20

30

40

50

60

70

80

90

100

88 90 92 94 96 98 100 102Time (min)

0

10

20

30

40

50

60

70

80

90

100

A undigested

B digested1

2

D

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

13703

18006

12405

9103

1030677046503 15213

18609

C F

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

15507

13013

1281477046404 1010819115

E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 14: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

14

of the α-ionone ring present in α-carotene The respective lut1 mutant is therefore 268

characterized by the absence of lutein and the accumulation of the β-ring mono-hydroxylated 269

α-carotene derivative zeinoxanthin (Kim et al 2009 Table I) The mutant leaves showed 270

about threefold increased levels of 3-oxo-α-ionol (apo1) while other AGs remained 271

unchanged and no additional AGs were detected (Figure 4B see Supplemental Figure 10 for 272

GC-MS traces) This excludes lutein as precursor for AGs identified In contrast the 273

increased levels of β-ring hydroxylated xanthophylls in lut1 leaves suggest zeaxanthin 274

antheraxanthin and zeinoxanthin as precursor explaining enhanced levels of 3-oxo-α-ionol 275

(apo1) 276

The second cytochrome P450-type hydroxylase CYP97A3 catalyzes the hydroxylation of β-277

ring xanthophylls and prefers α-carotene as substrate but also shows some β-carotene 278

hydroxylation activity Its absence defines the lut5 phenotype which accumulates increased 279

levels of α-carotene accompanied by an almost equivalent reduction of β-carotene In 280

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15

addition epoxy-xanthophylls like violaxanthin and neoxanthin are reduced (Kim and 281

DellaPenna 2006) In agreement with the suggested origin of 3-hydroxy-56-epoxy-β-ionone 282

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) from epoxy-xanthophylls (Figure 3) leaves of 283

lut5 had strongly reduced levels of these two AGs while those with a suggested origin from 284

hydroxylated xanthophylls decreased only slightly Furthermore both epoxy-xanthophyll 285

derived apocarotenoids decreased proportionally which is in favor of the secondary formation 286

of 6-hydroxy-3-oxo-α-ionone (apo4) from 3-hydroxy-56-epoxy-β-ionone (apo3) 287

288

Analysis of apocarotenoids in roots 289

AGs were also analyzed in roots which accumulate high amounts of β-carotene in response to 290

AtPSY overexpression reflecting low activity of carotene hydroxylases (Maass et al 2009) 291

Although the aglycons of several well-known glycoconjugated precursors were released such 292

as coniferyl alcohol (from coniferin Lewis and Yamamoto 1990) and indol-3-acetonitril 293

(from brassicin Normanly and Bartel 1999 see Supplemental Figure 11) we could not 294

detect any AGs neither in wild-type nor in AtPSY-overexpressing roots Given the xanthophyll 295

origin of the AGs identified this may be attributed to the much lower xanthophyll abundance 296

in roots than in leaves This is contrasted by the presence of long-chain free β-apocarotenals 297

in roots which were up to 50-fold higher in AtPSY-overexpressing lines compared to the wild 298

type (Figure 5) As already mentioned above these were not increased in leaves in response to 299

increased pathway fluxes indicating different mechanisms operating in both tissues 300

301

302

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16

DISCUSSION 303

Compensatory responses towards increased carotenoid flux in Arabidopsis leaves 304

The carotenoid pathway capacity in Arabidopsis leaves is increased in response to the 305

overexpression of the rate-limiting enzyme PSY This is not at all evident from carotenoid 306

levels but can be shown in derived non-green cells like calli and roots (Maass et al 2009) 307

Alternatively phytoene accumulation upon NFZ inhibition can be used as a readout in leaves 308

because most carotenoid turnover apparently and conceivably happens downstream of 309

phytoene This revealed a doubling of phytoene amounts in AtPSY-overexpressing lines 310

compared to wild-type leaves within four hours illumination with control light intensities 311

(Figure 1) and is further confirmed by in vitro measurements of PSY enzyme activity with 312

isolated plastid membranes Using these data it can be estimated that wild-type leaf carotenoid 313

homeostasis entails the de novo synthesis of about 14 of the carotenoids present (or 04 microg 314

mg DW-1) during a 16 hours light period which is enhanced to 28 in AtPSY-overexpressing 315

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17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

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Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

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89 90 91 92 93 94 95 960

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Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

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Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

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O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

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A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

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chlorophyll b

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-1]

Carotenoids

Supplemental Figure 9

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Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 15: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

15

addition epoxy-xanthophylls like violaxanthin and neoxanthin are reduced (Kim and 281

DellaPenna 2006) In agreement with the suggested origin of 3-hydroxy-56-epoxy-β-ionone 282

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) from epoxy-xanthophylls (Figure 3) leaves of 283

lut5 had strongly reduced levels of these two AGs while those with a suggested origin from 284

hydroxylated xanthophylls decreased only slightly Furthermore both epoxy-xanthophyll 285

derived apocarotenoids decreased proportionally which is in favor of the secondary formation 286

of 6-hydroxy-3-oxo-α-ionone (apo4) from 3-hydroxy-56-epoxy-β-ionone (apo3) 287

288

Analysis of apocarotenoids in roots 289

AGs were also analyzed in roots which accumulate high amounts of β-carotene in response to 290

AtPSY overexpression reflecting low activity of carotene hydroxylases (Maass et al 2009) 291

Although the aglycons of several well-known glycoconjugated precursors were released such 292

as coniferyl alcohol (from coniferin Lewis and Yamamoto 1990) and indol-3-acetonitril 293

(from brassicin Normanly and Bartel 1999 see Supplemental Figure 11) we could not 294

detect any AGs neither in wild-type nor in AtPSY-overexpressing roots Given the xanthophyll 295

origin of the AGs identified this may be attributed to the much lower xanthophyll abundance 296

in roots than in leaves This is contrasted by the presence of long-chain free β-apocarotenals 297

in roots which were up to 50-fold higher in AtPSY-overexpressing lines compared to the wild 298

type (Figure 5) As already mentioned above these were not increased in leaves in response to 299

increased pathway fluxes indicating different mechanisms operating in both tissues 300

301

302

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16

DISCUSSION 303

Compensatory responses towards increased carotenoid flux in Arabidopsis leaves 304

The carotenoid pathway capacity in Arabidopsis leaves is increased in response to the 305

overexpression of the rate-limiting enzyme PSY This is not at all evident from carotenoid 306

levels but can be shown in derived non-green cells like calli and roots (Maass et al 2009) 307

Alternatively phytoene accumulation upon NFZ inhibition can be used as a readout in leaves 308

because most carotenoid turnover apparently and conceivably happens downstream of 309

phytoene This revealed a doubling of phytoene amounts in AtPSY-overexpressing lines 310

compared to wild-type leaves within four hours illumination with control light intensities 311

(Figure 1) and is further confirmed by in vitro measurements of PSY enzyme activity with 312

isolated plastid membranes Using these data it can be estimated that wild-type leaf carotenoid 313

homeostasis entails the de novo synthesis of about 14 of the carotenoids present (or 04 microg 314

mg DW-1) during a 16 hours light period which is enhanced to 28 in AtPSY-overexpressing 315

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17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

20

40

60

80

100

88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

1 2

3

4

98

20

40

60

80

100

20

40

60

80

100

Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

0

10

20

30

40

50

60

70

80

90

100

88 90 92 94 96 98 100 102Time (min)

0

10

20

30

40

50

60

70

80

90

100

A undigested

B digested1

2

D

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

13703

18006

12405

9103

1030677046503 15213

18609

C F

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

15507

13013

1281477046404 1010819115

E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 16: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

16

DISCUSSION 303

Compensatory responses towards increased carotenoid flux in Arabidopsis leaves 304

The carotenoid pathway capacity in Arabidopsis leaves is increased in response to the 305

overexpression of the rate-limiting enzyme PSY This is not at all evident from carotenoid 306

levels but can be shown in derived non-green cells like calli and roots (Maass et al 2009) 307

Alternatively phytoene accumulation upon NFZ inhibition can be used as a readout in leaves 308

because most carotenoid turnover apparently and conceivably happens downstream of 309

phytoene This revealed a doubling of phytoene amounts in AtPSY-overexpressing lines 310

compared to wild-type leaves within four hours illumination with control light intensities 311

(Figure 1) and is further confirmed by in vitro measurements of PSY enzyme activity with 312

isolated plastid membranes Using these data it can be estimated that wild-type leaf carotenoid 313

homeostasis entails the de novo synthesis of about 14 of the carotenoids present (or 04 microg 314

mg DW-1) during a 16 hours light period which is enhanced to 28 in AtPSY-overexpressing 315

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17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

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A 14CO2-Incorporation into β-carotene

0102030405060708090

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Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

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89 90 91 92 93 94 95 960

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Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

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Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

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O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

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A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Rel

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Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Rel

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Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

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-1]

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Supplemental Figure 9

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Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Rel

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 17: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

17

lines The wild-type values match well with the carotenoid biosynthesis rate of 153 microg mg-1 316

within 48 hours calculated for NFZ-treated pepper leaves (Simkin et al 2003) 317

Only a portion of the overexpressed protein is membrane-bound and contributes to flux 318

increase while the remainder resides in the stroma and cannot be active Similar observations 319

are known from daffodil chromoplasts where an inactive stromal and an active membrane-320

bound population of PSY were found (Schledz et al 1996 Bonk et al 1997) Inactive 321

stromal PSY was also observed in etiolated mustard seedlings functioning as a ldquosleepingrdquo 322

enzyme pool that can rapidly be activated upon illumination by association to the developing 323

membrane system (Welsch et al 2000) 324

AGs are known aroma precursors identified in grapevine (Wirth et al 2001) and various 325

other fruits (Osorio et al 1999 Winterhalter and Rouseff 2001 Aubert et al 2003 Osorio 326

et al 2006) but they were not known from Arabidopsis thaliana hitherto The major 327

apocarotenoid aglycons identified here are 3-oxo-α-ionol 3-oxo-α-ionone 3-hydroxy-56-328

epoxy-β-ionone and 6-hydroxy-3-oxo-α-ionone Interestingly β-ionone supplemented to a 329

Vitis cell culture is transformed into the same oxygenated AGs (Mathieu et al 2009) 330

Therefore β-carotene represents a possible precursor and in fact 14CO2-pulse-chase labeling 331

experiments conducted with Arabidopsis pointed to α- and β-carotene as intermediates 332

undergoing turnover however this study could not investigate xanthophyll turnover lacking 333

sufficient label incorporation (Beisel et al 2010) 334

Our data do not provide an indication for α- and β-carotenes contributing markedly to flux 335

compensation by AG formation In addition although free β-carotene long-chain (non-336

glycosylated) cleavage products were detected these did not increase upon flux acceleration 337

(Supplemental Figure 2) However it cannot be excluded at this point that these compounds 338

antioxidants in their own right are further degraded non-enzymatically or through catalysis by 339

CCDs some of which exhibit broad substrate and regional specificity of cleavage (Bruno et 340

al 2015 Vogel et al 2008 Ilg et al 2009 Ilg et al 2014) Hence the free β-carotene-341

derived apocarotenoids detected may as well represent steady-state levels like β-carotene 342

itself The fact that high-light stress initiates the formation of β-carotene-derived cleavage 343

products with signaling function (β-cyclocitral Ramel et al 2012b) witnesses that dynamic 344

turnover occurs at the β-carotene level 345

346

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18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

20

40

60

80

100

88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

1 2

3

4

98

20

40

60

80

100

20

40

60

80

100

Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

0

10

20

30

40

50

60

70

80

90

100

88 90 92 94 96 98 100 102Time (min)

0

10

20

30

40

50

60

70

80

90

100

A undigested

B digested1

2

D

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

13703

18006

12405

9103

1030677046503 15213

18609

C F

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

15507

13013

1281477046404 1010819115

E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 18: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

18

Xanthophylls are substrates for apocarotenoid glycosides 347

The AGs detected derive from a different path As suggested by their structure containing in-348

ring hydroxyls and epoxy-groups they derive from xanthophylls (Fig 3) The change in AG 349

patterns responding according to the different proportions of xanthophylls present in 350

carotenoid hydroxylase mutants (Fig 4B) further supports their xanthophyll origin rather than 351

an indirect route through secondary oxygenation of β-ionone (Mathieu et al 2009) For 352

instance deficiency of the cytochrome P450 carotene hydroxylase CYP97A3 in lut5 results in 353

reduced levels of epoxy-xanthophylls like violaxanthin and neoxanthin This correlated with 354

lower levels of violaxanthin-derived apocarotenoid aglycons 3-hydroxy-56-epoxy-β-ionone 355

(apo3) and 6-hydroxy-3-oxo-α-ionone (apo4) The lower availability of these xanthophyll 356

precursors thus entails their reduced degradation into AGs in lut5 Similarly the absence of 357

lutein caused by the deficiency of the only ε-ring specific carotene hydroxylase CYP97C1 in 358

the lut1 mutant (Pogson et al 1996 Kim et al 2009) led to increased 3-oxo-α-ionole (apo1) 359

levels correlating with higher levels of zeinoxanthin and antheraxanthin while other 360

apocarotenoid aglycons remained unchanged In addition lutein can be excluded as precursor 361

for any of the apocarotenoid aglycons and its breakdown is expected to feed into different 362

pathways 363

AG accumulation also responds to increased pathway fluxes mediated by AtPSY 364

overexpression This can be concluded from increases of AGs and the biosynthetic capacity 365

determined from phytoene amounts in presence of NFZ with comparable rates (4-fold for 366

AGs Fig 2C and 3-fold for pathway flux Fig 1B) Whether AG levels represent final 367

sequestration forms or alternatively are subjected to further metabolic reactions remains to 368

be investigated Light is another factor capable in increasing pathway flux (Fig 1B) and 369

carotenoid degradationturnover (Ramel et al 2012a) However the amounts of AGs did not 370

change upon high-light treatment of Arabidopsis leaves In an interpretation this is due to the 371

fact that high-light conditions activate violaxanthin de-epoxidase as part of the xanthophyll 372

cycle which reduces the amounts of epoxidated xanthophylls considered as the primary AG 373

precursors Probably the fast down-regulation determined for CCD4 upon high-light stress 374

(Ramel et al 2012c) counteracts further reductions of epoxy-xanthophylls and facilitates a 375

fast increase in photoprotective zeaxanthin 376

The formation of the AGs identified is not restricted to Arabidopsis exactly these compounds 377

are known from fruits and grapevine (Wirth et al 2001) suggesting broader relevance None 378

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19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

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20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

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Supplemental Figure 9

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Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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  • Parsed Citations
  • Reviewer PDF
  • Supplemental Table 1
  • Supplemental Figures
  • Parsed Citations
Page 19: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

19

of the apocarotenoids identified could be traced back to the allenic moiety of neoxanthin We 379

never detected its direct breakdown products (eg grasshopper ketone) nor derivatives (eg β-380

damascenone) which are frequently observed in grapes and wines (Mendes-Pinto 2009) 381

Therefore we suggest that the epoxidized β-xanthophylls antheraxanthin and violaxanthin are 382

the prime source for AGs in Arabidopsis leaves The much higher diversity of AGs found in 383

fruits and flowers (Winterhalter and Rouseff 2001 Brandi et al 2011 Cooper et al 2011) 384

indicates changes in xanthophyll precursor utilization and secondary modifications which 385

might be related to enhanced xanthophyll breakdown accompanying fruit ripening or 386

senescence 387

388

CCD4 is mainly responsible for apocarotenoid glycosides formation 389

The homogenous C13 backbone found in all AGs identified pleads for enzymatic cleavage of 390

the xanthophyll precursor CCD1 and CCD4 are the candidate cleavage oxygenases not 391

contributing to ABA and strigolactone biosynthesis and preferentially cleaving at C9-C10 and 392

C9rsquo-C10rsquo (Bruno et al 2015 Huang et al 2009) liberating a C13 backbone In fact the ccd4-393

1 mutants showed low levels of all apocarotenoid aglycons which were almost similar in the 394

ccd1-1 ccd4-1 double mutant The homogeneous reduction of all apocarotenoids confirms the 395

wide substrate specificity of CCD4 capable in cleaving all the xanthophyll precursors 396

suggested above and provides direct evidence of the enzymatic formation of the major 397

proportion of AGs 398

In Vitis CCD1 was suggested to drive apocarotenoid glycoside formation based on a 399

correlation of CCD1 expression with the formation of apocarotenoids which were partially 400

glycosylated during berry development (Mathieu et al 2005) However the transcripts from 401

two grapevine CCD4 genes were recently found to be similarly ripening-induced (Lashbrooke 402

et al 2013) As stated above and despite similar substrate and product preferences of CCD1 403

and CCD4 in vitro (Bruno et al 2015 Vogel et al 2008) results from ccd4-1 and ccd1-1 404

ccd4-1 mutants is in favor of CCD4 being responsible for AG formation in planta In 405

agreement with this CCD4 correlates with the formation of xanthophyll-derived 406

apocarotenoids in two yellow and white-fleshed peach varieties (Brandi et al 2011) White-407

fleshed fruits with high CCD4 expression led to higher levels of eg 3-hydroxy-56-epoxy-β-408

ionone (apo3) compared with yellow-fleshed fruits Furthermore the suppression of CCD4 409

results in higher xanthophyll amounts in Ipomoea and Chrysanthemum petals and potato 410

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

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Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

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A 14CO2-Incorporation into β-carotene

0102030405060708090

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Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

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89 90 91 92 93 94 95 960

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A1 TIC (EI)

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3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

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Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

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2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

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0

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Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Rel

ativ

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unda

nce

20

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85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

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1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

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Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

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4

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wt ccd4ccd4

[microg

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DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

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Rel

ativ

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ance

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88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

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98

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Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Rel

ativ

e A

bund

ance

0

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88 90 92 94 96 98 100 102Time (min)

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A undigested

B digested1

2

D

50 100 150 2000

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Rel

ativ

e A

bund

ance

13703

18006

12405

9103

1030677046503 15213

18609

C F

50 100 150 2000

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Rel

ativ

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bund

ance

15507

13013

1281477046404 1010819115

E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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  • Supplemental Figures
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Page 20: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

20

tubers (Ohmiya et al 2006 Campbell et al 2010 Yamamizo et al 2010) and Arabidopsis 411

ccd4-1 knock-out lines strongly increase their seed carotenoid contents (Gonzalez-Jorge et al 412

2013) 413

The addition of sugar moieties is mediated by UDP glycosyltransferases (UGTs) which 414

exhibit wide substrate specificity Their main function is to increase the solubility of toxic 415

metabolites to allow their cellular transport for vacuolar sequestration (Ross et al 2001) In 416

fact carotenoid breakdown products are often characterized by an electrophilic αβ-417

unsaturated moiety that can react further (Farmer and Mueller 2012) and are reported to 418

cause various detrimental effects concluded from animal model systems and enzyme 419

inhibition assays (Ramel et al 2012b) Recently it was shown that apocarotenals are able to 420

form adducts with proteins in vitro and therefore have the potential to impair their 421

functionality (Kalariya et al 2011) Concluded from phytotoxicity studies externally applied 422

C13-apocarotenoids including those identified in the present work inhibited seed germination 423

and impaired root and shoot growth even at concentrations of 1 microM (DrsquoAbrosca et al 2004 424

DellaGreca et al 2004) Apocarotenoid glycosylation may be one way to reduce this 425

deleterious bioactivity of apocarotenoids generated during carotenoid steady-state regulation 426

This scenario may however be more complex The crosses of AtPSY-overexpressing lines 427

with ccd4-1 and ccd1-1 ccd4-1 were expected to produce less cleavage products less AGs 428

and hence increased leaf carotenoid levels The lethal seedling obtained however point to 429

deleterious effects at high fluxes when the detoxification pathway into AGs is dysfunctional 430

Possibly non-enzymatic degradation takes over leading to an uncoordinated accumulation of 431

free cleavage products which by yet unknown mechanisms do not find their way towards 432

glycosylation Possibly as mentioned above detoxification of carotenoid breakdown products 433

by glycosylation might require the coordinated supply of glycosidases The recent detection of 434

CCD4 localized in carotenoid-bearing plastoglubules might point towards an involvement of 435

these plastid structures in carotenoid breakdown and their subsequent metabolization 436

(Ytterberg et al 2006 Rubio et al 2008) 437

438

Tissue-specific differences in carotenoid degradation 439

There are tissue-dependent differences in carotenoid accumulation upon PSY overexpression 440

While leaves maintain steady-state levels non-green cells like roots and calli accumulate β-441

carotene to an extent that crystals form (Maass et al 2009) Apparently carotene 442

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21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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22

by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

20

40

60

80

100

88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

1 2

3

4

98

20

40

60

80

100

20

40

60

80

100

Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

0

10

20

30

40

50

60

70

80

90

100

88 90 92 94 96 98 100 102Time (min)

0

10

20

30

40

50

60

70

80

90

100

A undigested

B digested1

2

D

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

13703

18006

12405

9103

1030677046503 15213

18609

C F

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

15507

13013

1281477046404 1010819115

E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 21: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

21

hydroxylation becomes rate-limiting upon enhanced pathway flux and determines the 443

amounts of β-carotene accumulating Thus it is the low amount of xanthophylls present in 444

Arabidopsis roots that causes the absence of AGs this again corroborating their xanthophyll 445

origin Interestingly co-expression of a hydroxylase gene in PSY-overexpressing citrus callus 446

dramatically reduces its β-carotene content but does not equivalently increase total 447

xanthophyll amounts (Cao et al 2012) It remains to be determined whether this is due to 448

increased xanthophyll cleavage and an accumulation of AGs 449

While AGs are absent Arabidopsis roots accumulate non-glycosylated long-chain β-carotene 450

derived apocarotenoids (Fig 5) and respond positively to AtPSY overexpression which is in 451

contrast to leaves However all β-apocarotenals identified make up only about 003 of the 452

β-carotene amount accumulating in the transgenic roots This may be due to the crystalline 453

form of β-carotene a mode of deposition also met in carrots tomato and papaya (Kim et al 454

2010 Schweiggert et al 2011) These molecules are not in monodisperse solution and are 455

assumed to be in a more stable form being protected from both enzymatic degradation and 456

possible radical attack A similar stabilizing effect was suggested also for crystalline lycopene 457

in tomato chromoplasts (Nogueira et al 2013) 458

Therefore further reduction of carotene hydroxylation appears as the most promising 459

approach to improve β-carotene (provitamin A) accumulation in crops which accumulate 460

xanthophylls in addition to carotenes In fact this is observed in association with a 461

widespread CYP97A3 deficiency in orange carrot cultivars (Arango et al 2014) favorable 462

BCH alleles in maize (Yan et al 2010) and also in biotechnological approaches eg in potato 463

tubers (Diretto et al 2007) Approaches combining both a reduced β-carotene metabolization 464

by inhibiting carotene hydroxylation and an increased pathway flux by higher levels of PSY 465

are therefore expected to further boost the development of crops with provitamin A enriched 466

tissues 467

468

MATERIALS AND METHODS 469

In vitro phytoene synthase activity 470

Plastid isolation from leaves of four week old Arabidopsis plants was performed according to 471

Welsch et al (2000) Pellets were resuspended in 2 mL of lysis buffer (20 mM Tris pH 80 4 472

mM MgCl2) incubated on ice for 10 min and separated into stroma and membrane fractions 473

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by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

20

40

60

80

100

88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

1 2

3

4

98

20

40

60

80

100

20

40

60

80

100

Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

0

10

20

30

40

50

60

70

80

90

100

88 90 92 94 96 98 100 102Time (min)

0

10

20

30

40

50

60

70

80

90

100

A undigested

B digested1

2

D

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

13703

18006

12405

9103

1030677046503 15213

18609

C F

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

15507

13013

1281477046404 1010819115

E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 22: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

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by centrifugation at 21000g for 10 min Membranes were resuspended in 300 microL of lysis 474

buffer and protein concentration determined using the Bio-Rad Protein Assay (Bio-Rad 475

Munich) For in vitro phytoene synthesis 200 microg protein was incubated with 10 microM 476

[14C]isopentenyl diphosphate (IPP 50 mCi mmol-1 ARC) 20 microM IPP 40 microM dimethylallyl 477

diphosphate (Isoprenoids) 4 mM ATP and 10 microg of recombinant purified geranylgeranyl 478

diphosphate synthase (Kloer et al 2006) for 30 min Incubation conditions and product 479

analysis and quantification was performed by scintillation counting and thin layer 480

chromatography scanning as described (Welsch et al 2000) 481

14C-labeling experiments 482

14C-Labeling was performed essentially according to Beisel et al (2010) Basically 14CO2 483

was liberated from [14C]carbonate solution by acid and heat and applied to detached rosette 484

leaves placed in a leaf chamber After 30 min in growth light (pulse period ~130 μmol 485

photons m‐2 s‐1) remaining 14CO2 was adsorbed the chamber was opened and the leaves were 486

subsequently exposed to strong light for 30 min (chase period ~1000 μmol photons m‐2 s‐1) 487 14C-Incorporation into β-carotene (all isomers) was analyzed upon extraction with acetone by 488

radio-HPLC as described (Beisel et al 2010) 489

Carotenoid analysis 490

Carotenoids were extracted using lyophilized leaves and analyzed by HPLC as described 491

(Welsch et al 2008) 492

LC-MS analysis 493

500 mg (roots) or 10 mg (leaves) lyophilized powder was extracted three times with 2 mL of 494

acetone Supernatants were combined and spiked with 60 microL of each external standard 495

VIS682A [20 microg mL-1] 2 mL of petroleum etherdiethyl ether (PEDE 14 vv) were added 496

filled up to 14 mL with water and centrifuged for 5 min at 4000g The hyperphase was 497

transferred into a new tube and extraction was repeated once Combined PEDE supernatants 498

were dried in a vortex evaporator and redissolved in CHCl3MeOH (11 vv 60 microL for root 499

extracts 100 microL for leave extracts) 2 microL were injected to the LC-MS system consisting of an 500

Orbitrap-based Thermo Q-Exactive coupled to a Thermo Ultimate 3000 UPLC-system 501

(Thermo Scientific Dreieich Germany) Separation was performed with a C18 UPLC-column 502

(Hypersil Gold 150 x 21 mm 19 microm Thermo Scientific) using solvent system A (H2O + 005 503

acetic acid [vv]) and B (acetonitrile + 005 acetic acid [vv]) The column was 504

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23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

20

40

60

80

100

88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

1 2

3

4

98

20

40

60

80

100

20

40

60

80

100

Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

0

10

20

30

40

50

60

70

80

90

100

88 90 92 94 96 98 100 102Time (min)

0

10

20

30

40

50

60

70

80

90

100

A undigested

B digested1

2

D

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

13703

18006

12405

9103

1030677046503 15213

18609

C F

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

15507

13013

1281477046404 1010819115

E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 23: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

23

developed with a flow rate of 05 mL min-1 isocratic for 1 min followed by a linear gradient 505

from 70 B to 100 B within 5 min maintained for 10 min and then to 70 B within 3 506

min maintaining the final conditions for another 4 min Identification of apocarotenoids was 507

carried out using atmospheric pressure chemical ionization (APCI) in positive mode Nitrogen 508

was used as sheath and auxiliary gas set to 20 and 10 arbitrary units respectively Vaporizer 509

temperature was set to 350 degC and capillary temperature was 320 degC Spray voltage was set to 510

5 kV and normalized collision energy to 35 arbitrary units Data analysis was performed 511

using the TraceFinder 31 software (Thermo Scientific) Quantification of apocarotenoids was 512

performed with external calibration curves using the following authentic apocarotenoid 513

standards β-apo-13-carotenone (C18H26O mz = 25819836) retinal (C20H28O mz = 514

28421401) β-apo-14lsquo-carotenal (C22H30O mz = 31022966) β-apo-12lsquo-carotenal (C25H34O 515

mz = 35026096) β-apo-10lsquo-carotenal (C27H36O mz = 37627661) β-apo-8lsquo-carotenal 516

(C30H40O mz = 41630791) The internal standard VIS682A detected at 682 nm was used to 517

correct for injection errors and volume variations 518

Analysis of apocarotenoids glycosides 519

Protocols for Arabidopsis were based on extraction procedure of apocarotenoid glycosides for 520

grapevine (Wirth et al 2001 Mathieu et al 2005) Leaves (5 g) from four week old 521

Arabidopsis plants were ground in liquid nitrogen and incubated in 50 mL 40 mM 522

gluconolactone in water to inhibit endogenous glycosidases After 90 min continuous shaking 523

sample were centrifuged (15 min at 6000g) and the supernatant filtered using grade GFC 524

Glass Microfiber filters (Whatman) Sep-Pac columns (C18 Waters) were conditioned with 525

10 mL MeOH equilibrated with 10 mL water samples were loaded onto the columns washed 526

with 10 mL water and eluted with 10 mL MeOH Eluates were dried in a rotary evaporator 527

resuspended in 400 microL citrate buffer (01 M Na2HPO4 005 M citric acid pH 50) and 528

distributed into two aliquots with 200 microL each One aliquot was incubated with 100 microL of 10 529

mg mL-1 rapidase AR200 (DSM) in citrate buffer and incubated at 40degC over night with 250 530

rpm shaking The second aliquot was used as a non-digested control and processed similarly 531

Samples were mixed with 100 microL pentanedichloromethane (21 vv) centrifuged at 21 532

500g for 10 min and the upper pentane layer was transferred into a fresh tube Extraction 533

was repeated twice the pentane phases combined 50 microL of the internal standard 4-nonanol 534

(625 ng microL-1 in EtOH) was added and the volume was reduced to 100 microL under a stream of 535

nitrogen and stored at -20degC until analysis Root extracts were prepared accordingly from 5 g 536

roots from hydroponically grown Arabidopsis plants (Heacutetu et al 2005) 537

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24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

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25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

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27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

20

40

60

80

100

88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

1 2

3

4

98

20

40

60

80

100

20

40

60

80

100

Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

0

10

20

30

40

50

60

70

80

90

100

88 90 92 94 96 98 100 102Time (min)

0

10

20

30

40

50

60

70

80

90

100

A undigested

B digested1

2

D

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

13703

18006

12405

9103

1030677046503 15213

18609

C F

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

15507

13013

1281477046404 1010819115

E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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  • Parsed Citations
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  • Supplemental Table 1
  • Supplemental Figures
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Page 24: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

24

GC-MS analyses were performed on a Trace GCTrace DSQII system (Thermo) The 538

instrument was equipped with a 30 m Zebron ZB5 column 30 m x 025 mm x 025 microm 539

(Phenomenex Aschaffenburg) and the velocity of the carrier gas (He) was at 1 mL min-1 540

Injections of 2 μl of the extracts were carried out in splitless mode and the injector 541

temperature was set at 220 degC Oven temperature was initially set at 60 degC for 5 min and then 542

progressed at a rate of 25 degC minminus1 to 340 degC and maintained for 5 min Ionization was 543

performed in electron impact (EI) mode (70 eV) Initially acquisition was performed in scan 544

mode to identify apocarotenoids using the NIST2005 mass spectral library (National Institute 545

of Standards USA) Compound identity was confirmed in positive ion chemical ionization 546

(PICI) mode by comparing retention time of molecule ion mass with ion spectra from EI 547

analysis of the same samples Quantification was done on selected daughter ions (152 mz for 548

3-oxo-α-ionol 150 mz for 3-oxo-α-ionone 123 mz for 3-hydroxy-56-epoxy-β-ionone 124 549

mz for 6-hydroxy-3-oxo-α-ionone and 101 mz for the internal standard 4-nonanol) Non-550

isothermal Kovats indices were calculated according to van den Dool and Kratz (1963) 551

Immunoblot analysis 552

Generation and affinity-purification of antibodies directed against Arabidopsis PSY is 553

described in Maass et al (2009) Proteins were extracted with phenol from plastids and plastid 554

subfractions as described (Welsch et al 2007) After SDS-PAGE blotting onto PVDF 555

membranes (Carl Roth Karlsruhe) and treatment with blocking solution (TBS containing 5 556

[wv] milk powder) membranes were incubated with antibodies in PBS containing 01 557

(vv) Tween-20 and 1 (wv) milk powder For detection the ECL system (GE Healthcare) 558

was used An SDS gel with the same protein amounts was stained with coomassie to confirm 559

equal loading of proteins 560

Arabidopsis growth 561

Arabidopsis seeds were grown on soil at 20 degC under long-day conditions with 100 micromol 562

photons m-2s-1 For high light treatment plants were illuminated with 1500 micromol photons m-563 2s-1 for four hours at 21 degC Corresponding background Arabidopsis ecotype was used for 564

experiments with AtPSY-overexpressing lines (Wassilewskija) and CCD and carotene 565

hydroxylase mutants (Columbia) 566

Norflurazon (NFZ) treatments were done according to Beisel et al (2011) Leaves from four 567

week old plants were detached immediately transferred onto 70 mM NFZ and incubated for 568

two hours in the dark Leaves were transferred onto 10 mM NFZ and further incubated for 569

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

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600

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Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

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A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

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[β-C

Chl

a-1 ]

B β-Apocarotenals

0

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Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

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89 90 91 92 93 94 95 960

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A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

0

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1000

50

1000

50

1000

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Rel

ativ

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bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

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bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

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0

50

100

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100

Rel

ativ

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bund

ance

0

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0

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Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

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Rel

ativ

e A

bund

ance

20

40

60

80

100

88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

1 2

3

4

98

20

40

60

80

100

20

40

60

80

100

Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Rel

ativ

e A

bund

ance

0

10

20

30

40

50

60

70

80

90

100

88 90 92 94 96 98 100 102Time (min)

0

10

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30

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60

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A undigested

B digested1

2

D

50 100 150 2000

10

20

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60

70

80

90

100

Rel

ativ

e A

bund

ance

13703

18006

12405

9103

1030677046503 15213

18609

C F

50 100 150 2000

10

20

30

40

50

60

70

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90

100

Rel

ativ

e A

bund

ance

15507

13013

1281477046404 1010819115

E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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  • Parsed Citations
  • Reviewer PDF
  • Supplemental Table 1
  • Supplemental Figures
  • Parsed Citations
Page 25: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

25

four hours with 100 micromol photons m-2s-1 Leaves were always incubated with the adaxial 570

surface facing the air Leaves were harvested immediately frozen in liquid nitrogen 571

lyophilized carotenoids were extracted and analyzed by HPLC 572

The T-DNA knockout line for CYP97C1 (At3g53130 SALK_129724 lut1-4) was obtained 573

from ABRC those for CYP97A3 (At1g31800 lut5-1) CCD4 (At4g19170 SALK_097984 574

ccd4-1) and a double mutant from a cross with ccd1-1 (At3g63520 SAIL_390_C01) were 575

kindly provided by Dean DellaPenna 576

577

Supplemental Data 578

Supplemental Table I Characteristics of apocarotenoid aglycons identified in Arabdiopsis 579

leaves 580

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activity assay 581

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves 582

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digested Arabidopsis 583

wild-type leaf extracts by GC-MS analysis 584

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digested 585

Arabidopsis wild-type leaf extracts by GC-MS analysis 586

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-587

digested Arabidopsis wild-type leaf extracts by GC-MS analysis 588

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested 589

Arabidopsis wild-type leaf extracts by GC-MS analysis 590

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsis 591

leaves 592

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4 mutant 593

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutant 594

Arabidopsis line 595

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26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

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Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

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Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

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Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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  • Supplemental Table 1
  • Supplemental Figures
  • Parsed Citations
Page 26: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

26

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotene 596

hydroxylase mutants 597

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril in 598

glycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis 599

600

ACKNOWLEDGEMENTS 601

We thank Dean DellaPenna (Michigan State University USA) for providing seeds of 602

hydroxylase and CCD mutant lines We thank Mark Bruno for valuable discussions and 603

Carmen Schubert for her skillful assistance 604

FIGURE LEGENDS 605

Figure 1 Increased carotenoid pathway flux in leaves of AtPSY-overexpressing 606 Arabidopsis lines 607

Despite similar levels of visible carotenoids (A) phytoene accumulates upon norflurazon-608

inhibition in leaves of AtPSY-overexpressing lines (At22 At23) to about twofold higher levels 609

compared to the wild type after four hours exposure to control light (CL B) High light (HL) 610

results in similar phytoene levels in both wt and At23 Increased AtPSY amounts in At22 are 611

partially inactivated by stromal localization as shown by immunoblot analysis with whole 612

plastids membrane and stromal fractions (D) and in vitro [14C]phytoene analysis (C) Bands 613

from a coomassie stained SDS gel representing Rubisco large subunit (plastids stroma) and 614

an abundant light harvesting complex II protein (membranes) are shown as control for equal 615

loading of proteins Data are mean plusmn SE of three (A B) and eight (C) biological replicates 616

Significant difference to control samples is indicated with a (Studentrsquos t test P lt 0002) 617

618

Figure 2 Apocarotenoid glycosides in Arabidopsis leaves 619

A GC-MS total ion current chromatograms are shown before (top) and after (middle and 620

bottom) glycosidase digestion of hydrophilic Arabidopsis and Vitis leaf extracts respectively 621

Four major apocarotenoid glycosides were determined apo1 3-oxo-α-ionole apo2 3-oxo- α-622

ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-ionone B 623

Distribution of single apocarotenoid glycosides in wild-type leaves (normalized peak areas) 624

C Apocarotenoid glycosides in leaves of wild-type and AtPSY-overexpressing line At22 625

grown under control light (CL) and high light (HL) Normalized apocarotenoid levels were 626

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

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28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

20

40

60

80

100

88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

1 2

3

4

98

20

40

60

80

100

20

40

60

80

100

Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

0

10

20

30

40

50

60

70

80

90

100

88 90 92 94 96 98 100 102Time (min)

0

10

20

30

40

50

60

70

80

90

100

A undigested

B digested1

2

D

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

13703

18006

12405

9103

1030677046503 15213

18609

C F

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

15507

13013

1281477046404 1010819115

E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 27: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

27

expressed relative to wild-type leaves grown under CL Data are mean plusmn SE of three 627

biological replicates Values that are significantly different from the wt are indicated with an a 628

(Studentrsquos t test P lt 005) No significant difference was detected for wt and At22 grown 629

under different light qualities (P gt 03) 630

631

Figure 3 Xanthophyll precursors for apocarotenoid glycosides in Arabidopsis leaves 632

Apocarotenoid glycosides identified in Arabidopsis leaves and their possible precursors are 633

shown Apocarotenoids in brackets were not detected and represent possible intermediates 634

Only one half of a xanthophyll molecule is shown the second half is denoted with an R 635

Carotene hydroxylases with preference for β-carotene (BCH1 and BCH2) and α-carotene 636

(CYP97A3 and CYP97C1) and derived xanthophylls are indicated Apo1 3-oxo-α-ionol 637

apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-β-ionone apo4 6-hydroxy-3-oxo-α-638

ionone 639

640

Figure 4 Apocarotenoid glycosides levels in Arabidopsis mutants 641

Apocarotenoid glycosides in leaves of 4-week-old plants from Arabidopsis wild type (ecotype 642

Columbia col) ccd4-1 mutant and ccd1-1 ccd4-1 double mutant lines (A) as well as from 643

mutants deficient in carotene hydroxylase CYP97C1 (lut1) and CYP97A3 (lut5 B) 644

respectively Normalized apocarotenoid levels were expressed relative to those in wild-type 645

leaves in each set Apo1 3-oxo-α-ionol apo2 3-oxo-α-ionone apo3 3-hydroxy-56-epoxy-646

β-ionone apo4 6-hydroxy-3-oxo-α-ionone Data are mean plusmn SE of three biological 647

replicates Values that are significantly different from the wt are indicated with a (Studentrsquos t 648

test P lt 005) 649

650

Figure 5 β-Apocarotenoids in Arabidopsis roots 651

β-Carotene derived apocarotenoids were determined in roots from hydroponically grown 652

plants from Arabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-653

overexpressing lines (At22 and At23) by LC-MS analyses Apocarotenoid amounts were 654

quantified according to external standard curves and expressed in pg per mg dry weight Data 655

are mean plusmn SE of three biological replicates Statistical significance is indicated with a 656

(Studentrsquos t test P lt 005) and b (P lt 01) 657

658

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

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89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

20

40

60

80

100

88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

1 2

3

4

98

20

40

60

80

100

20

40

60

80

100

Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e A

bund

ance

0

10

20

30

40

50

60

70

80

90

100

88 90 92 94 96 98 100 102Time (min)

0

10

20

30

40

50

60

70

80

90

100

A undigested

B digested1

2

D

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

13703

18006

12405

9103

1030677046503 15213

18609

C F

50 100 150 2000

10

20

30

40

50

60

70

80

90

100

Rel

ativ

e A

bund

ance

15507

13013

1281477046404 1010819115

E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 28: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

28

TABLES 659

660

Table I Carotenoid amounts in Arabidopsis mutants 661

Carotenoid amounts were determined by HPLC and are given in mmoles moles Chl a+b-1 662

Carotenoids showing significant changes compared to the wild type are given in bold 663

(Studentrsquos t test P lt 005) Percentages of carotenoids on total amounts are given in brackets 664

viola+neox sum of violaxanthin and neoxanthin anther antheraxanthin zeino zeinoxanthin 665

α-crypto α-cryptoxanthin α-β-caro α-β-carotene β-xanthophylls sum of violaxanthin 666

antheraxanthin zeaxanthin and neoxanthin moles epoxy moles of epoxy-xanthophyll 667

moieties na not detectable Data are mean plusmn SE of three biological replicates 668

col ccd4-1 ccd1-1 ccd4-1 lut1 lut5

viola+neox 1433 plusmn 94 (37) 1344 plusmn 93 (38) 1390 plusmn 173 (35) 2365 plusmn 335 (62) 926 plusmn 47 (26) anthera 25 plusmn 13 (06) 25 plusmn 14 (07) 28 plusmn 03 (07) 233 plusmn 36 (61) 34 plusmn 07 (10)

zeino na na na 450 plusmn 42 (12) na

α-crypto na na na na 45 plusmn 02 (13)

other xantho 113 plusmn 20 (29) 122 plusmn 12 (34) 130 plusmn 16 (33) 149 plusmn 29 (39) 89 plusmn 10 (25)

lutein 1724 plusmn 132 (44) 1540 plusmn 163 (43) 1858 plusmn 78 (47) nd 1679 plusmn 162 (48)

α-caro 34 plusmn 11 (09) 40 plusmn 18 (11) 32 plusmn 14 (08) 46 plusmn 09 (12) 561 plusmn 30 (159)

β-caro 552 plusmn 137 (14) 507 plusmn 82 (14) 544 plusmn 33 (14) 601 plusmn 84 (16) 187 plusmn 18 (5)

total caro 3880 plusmn 236 3578 plusmn 280 3982 plusmn 243 3844 plusmn 525 3520 plusmn 162

β-xanthophylls 1571 plusmn 73 1491 plusmn 101 1548 plusmn 156 2747 plusmn 400 1049 plusmn 56

moles epoxy 2891 plusmn 178 2713 plusmn 187 2809 plusmn 345 4963 plusmn 706 1886 plusmn 94

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

0

200

400

600

800

1000

1200

Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

DW

A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

14C

[Bq

microg C

hla-

1 ]

Rel

14C

[β-C

Chl

a-1 ]

B β-Apocarotenals

0

01

02

Wt At12 At22

WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

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89 90 91 92 93 94 95 960

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

0

50

1000

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

0

50

1000

50

1000

50

100

Rel

ativ

e A

bund

ance

0

50

100A1 TIC (EI)

2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

0

50

100

0

50

100

Rel

ativ

e A

bund

ance

0

50

100

0

50

100

Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

40

60

80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

60

80

100

20

40

60

80

100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

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-1]

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Supplemental Figure 9

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Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 29: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

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Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

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A 14CO2-Incorporation into β-carotene

0102030405060708090

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0

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Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

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89 90 91 92 93 94 95 960

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A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

B C D

O

OH

Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

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Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

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2 mz = 123 (EI)

3 TIC (CI)

4 mz = 225 (CI)

B C D

OH

O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

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0

50

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100

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bund

ance

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Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Rel

ativ

e Ab

unda

nce

20

40

60

80

100

85 90 95Time (min)

A wild type (Ws)

B 35SAtPSY

20

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80

100

1 2

3

4

Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Rel

ativ

e Ab

unda

nce

Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

3

420

40

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100

20

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100

Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

1

2

3

4

5

6

7

8

9

wt ccd4ccd4

[microg

mg

DW

-1]

Chlorophylls

0

05

1

15

2

25

3

35

wt ccd4ccd4

[microg

mg

DW

-1]

Carotenoids

Supplemental Figure 9

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Rel

ativ

e A

bund

ance

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88 90 92 94 96Time (min)

A wild type (Col)

B lut1

C lut5

1 2

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4

98

20

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100

Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Rel

ativ

e A

bund

ance

0

10

20

30

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80

90

100

88 90 92 94 96 98 100 102Time (min)

0

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A undigested

B digested1

2

D

50 100 150 2000

10

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Rel

ativ

e A

bund

ance

13703

18006

12405

9103

1030677046503 15213

18609

C F

50 100 150 2000

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40

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90

100

Rel

ativ

e A

bund

ance

15507

13013

1281477046404 1010819115

E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 30: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

apocarotenoid fragmentation(mz) RT (min) KI possible

precursors

3-oxo-α-ionol (apo1)

208 (Mbull+) 108 (100) 152 902 1653 L aC bC Zo Z A

3-oxo-α-ionone (apo2)

206 (Mbull+) 108 (100) 150 905 1656 L aC bC Zo Z A

3-hydroxy-56-epoxy-β-ionone

(apo3)

224 (Mbull+) 123 (100) 920 1671 V N A

6-hydroxy-3-oxo-β-ionone (apo4)

222 (Mbull+) 124 (100) 166 974 1829 V N A

Supplemental Table I

Supplemental Table I Characteristics of apocarotenoid aglycons identified inArabdiopsis leaves

Molecule ions (Mbull+) and major fragments are given the main fragment is indicated by (100)KI non-isothermal Kovats retention index RT retention time possible precursorxanthophylls are indicated L lutein aC α-cryptoxanthin bC β-cryptoxanthin Zozeinoxanthin Z zeaxanthin A antheraxanthin V violaxanthin N neoxanthin

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GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

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Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

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Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

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89 90 91 92 93 94 95 960

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Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

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Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

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O

O

89 90 91 92 93 94 95 96Time (min)

97

Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

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Time (min)94 95 96 97 98 99 100 101

A1 TIC (EI)

2 mz = 124 (EI)

3 TIC (CI)

4 mz = 223 (CI)

B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Rel

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B 35SAtPSY

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Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Rel

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Time (min)86 88 90 92 94 96 98

A wild type (Col)

B ccd4

1 2

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420

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Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

other xanthophylls

lutein

αβ-carotene

chlorophyll a

chlorophyll b

A B

C

0

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-1]

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[microg

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-1]

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Supplemental Figure 9

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Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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1030677046503 15213

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E

Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 31: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

GGPP

phytoene

GGOH

Supplemental Figure 1

Supplemental Figure 1 [14C]-labelled compounds formed in an in vitro PSY activityassay

Chloroplast membranes were incubated with mustard GGPP synthase DMAPP and [14C]IPPfor 15 and 30 min respectively Chloroform extracts were separated by TLC and analyzed byTLC scanning The following components were identified GGPP (40 mm) GGOH (140 mm)and phytoene (170 mm) Wt wild type At22 AtPSY-overexpressing line

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Supplemental Figure 2

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Retinal β-Apo 13 Carotenone

β-Apo 14`Carotenal

β-Apo 12`Carotenal

β-Apo 10`Carotenal

β-Apo 8`Carotenal

pg a

poca

rote

nalm

g-1

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A 14CO2-Incorporation into β-carotene

0102030405060708090

Wt At12 At22

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[Bq

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B β-Apocarotenals

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WtAt22At23

Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

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89 90 91 92 93 94 95 960

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A1 TIC (EI)

2 mz = 152 (EI)

3 TIC (CI)

4 mz = 209 (CI)

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Apocarotenoid 1 3-oxo-α-ionol

Time (min)

Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

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Apocarotenoid 2 3-oxo-α-ionone

A1 TIC (EI)

2 mz = 150 (EI)

3 TIC (CI)

4 mz = 207 (CI)

O

O

B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

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2 mz = 123 (EI)

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4 mz = 225 (CI)

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Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

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Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

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Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 32: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

Supplemental Figure 2

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Retinal β-Apo 13 Carotenone

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Supplemental Figure 2 β-Apocarotenoids in Arabidopsis leaves

A) 14CO2-Incorporation into b-carotene in leaves from wild-type and AtPSY-overexpressinglines upon pulse-chase labeling (At12 At22) Amounts of 14C-β-carotene are expressedrelative to the chlorophyll a content (left) and to the incorporation of 14C into Chl a (right) B) β-Carotene derived apocarotenoids were analyzed in leaves from 4-week-old plants fromArabidopsis wild type (ecotype Wassilewskija Wt) and two AtPSY-overexpressing lines(At22 and At23) Apocarotenalone amounts were quantified according to external standardsand expressed in pg per mg dry weight Data are mean plusmn SE of three biological replicates Nosignificant differences were detected (Studentrsquos t test p gt 01)

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89 90 91 92 93 94 95 960

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Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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89 90 91 92 93 94 95 96Time (min)

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3 TIC (CI)

4 mz = 207 (CI)

O

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B C D

Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

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Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

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B C D

OHO

O

Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

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Supplemental Figure 9

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Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

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OH

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 33: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

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Supplemental Figure 3

Supplemental Figure 3 Identification of 3-oxo-α-ionol in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionol was clearly identifiable at a retention time of 902 +- 002 min uponscanning for its fragment of mz = 152 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 209 a specific peak at identical retention time (4) Massspectra of 3-oxo-α-ionol upon EI (B) CI (C) and from the database (D) are also shown

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Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

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Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

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Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

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Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 34: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

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Supplemental Figure 4

Supplemental Figure 4 Identification of 3-oxo-α-ionone in glycosidase-digestedArabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-oxo-α-ionone was clearly identifiable at a retention time of 905 +- 002 min uponscanning for its fragment of mz = 150 (2) For confirmation extracts were run in chemicalionization mode (CI) This revealed both in TIC (3) as well as upon scanning for its pseudo-molecular ion of mz = [M+H]+ = 207 a specific peak at identical retention time (4) Massspectra of 3-oxo-a-ionone upon EI (B) CI (C) and from the database (D) are also shown

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Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

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Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

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Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Supplemental Figure 7

Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 8

Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

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Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 35: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

Apocarotenoid 3 3-Hydroxy-56-epoxy-β-ionone

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Supplemental Figure 5

Supplemental Figure 5 Identification of 3-hydroxy-56-epoxy-β-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 3-Hydroxy-56-epoxy-β-ionone was clearly identifiable at a retention time of 924 +-002 min upon scanning for its main fragment of mz = 123 (2) For confirmation extractswere run in chemical ionization mode (CI) This revealed both in TIC (3) as well as uponscanning for its pseudo-molecular ion of mz = [M+H]+ = 225 a specific peak at identicalretention time (4) Mass spectra of 3-hydroxy-56-epoxy-β-ionone upon EI (B) CI (C) andfrom the database (D) are also shown

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Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

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Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 36: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

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Apocarotenoid 4 6-hydroxy-3-oxo-α-ionone

Supplemental Figure 6

Supplemental Figure 6 Identification of 6-hydroxy-3-oxo-α-ionone in glycosidase-digested Arabidopsis wild-type leaf extracts by GC-MS analysis

A total ion current (TIC) chromatogram of extracts run in electron impact ionization mode(EI 1) 6-hydroxy-3-oxo-α-ionone was clearly identifiable at a retention time of 974 +- 002min upon scanning for its main fragment of mz = 124 (2) For confirmation extracts wererun in chemical ionization mode (CI) This revealed both in TIC (3) as well as upon scanningfor its pseudo-molecular ion of mz = [M+H]+ = 223 a specific peak at identical retention time(4) Mass spectra of 6-hydroxy-3-oxo-α-ionone upon EI (B) CI (C) and from the database(D) are also shown

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Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

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Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 37: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

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Supplemental Figure 7 Apocarotenoid glycosides in AtPSY-overexpressing Arabidopsisleaves

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Wassilewskija A) and AtPSY-overexpressing line At23 (B) were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 82 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

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Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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  • Parsed Citations
Page 38: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

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Supplemental Figure 8 Apocarotenoid glycosides in leaves from Arabidopsis CCD4mutant

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) and CCD4(B) mutant plants were digested with glycosidase extracted with pentane and analyzed byGC-MS Backgrounds from corresponding non-digested samples were subtracted and total ioncurrent chromatograms between 86 and 98 min run time are shown Apocarotenoids wereidentified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-iononeand 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

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Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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  • Supplemental Figures
  • Parsed Citations
Page 39: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

Supplemental Figure 9 Crosses between AtPSY-overexpressing and ccd4-1 mutantArabidopsis line

One AtPSY-overexpressing line was crossed with the ccd4-1 mutant Seeds from the F3generation homozygous for the 35SAtPSY transgene were germinated on MS agar for oneweek A) Seedlings homozygous for the ccd4-1 mutation developed bleached cotyledons bothunder control light (100 micromol photons m-2 s-1 left) and low light (10 micromol photons m-2 s-1right) B) Although development of primary leaves was initiated they did not develop further(right) and the plants died Wt seedlings grown in parallel are shown as control C) HPLCanalyses of one week old seedlings grown under control light revealed about 40 reducedlevels of both carotenoids and chlorophylls compared to the wild type Data are mean plusmn SE ofthree biological (wt) and two technical (ccd4ccd4) replicates

violaneox

antheraxanthin

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lutein

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Supplemental Figure 9

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Supplemental Figure 10

Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

N

NH

O

OH

OH

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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  • Supplemental Figures
  • Parsed Citations
Page 40: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

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Supplemental Figure 10 Apocarotenoid aglycons in leaves from Arabidopsis carotenehydroxylase mutants

Hydrophilic leaf extracts from Arabidopsis wild-type (ecotype Columbia col A) lut1 (B)and lut5 (C) mutant plants were digested with glycosidase extracted with pentane andanalyzed by GC-MS Backgrounds from corresponding non-digested samples were subtractedand total ion current chromatograms between 86 and 98 min run time are shownApocarotenoids were identified as follows 1 3-oxo-α-ionol 2 3-oxo-α-ionone 3 3-hydroxy-56-epoxy-β-ionone and 4 6-hydroxy-3-oxo-α-ionone

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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  • Supplemental Figures
  • Parsed Citations
Page 41: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

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Supplemental Figure 11

Supplemental Figure 11 Identification of coniferyl alcohol and indol-3-acetonitril inglycosidase-digested Arabidopsis wild-type root extracts by GC-MS analysis

Total ion current chromatogram of extracts run in electron impact ionization mode before (A)and after digestion with glycosidase (B) C Recorded mass spectra of coniferyl alcohol at RT942 (peak 1) and E indol-3-acetonitril at RT 100 (peak 2) and those retrieved from thedatabase (D and F respectively) are also shown

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Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 42: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

Parsed CitationsAharoni A Giri AP Deuerlein S Griepink F de Kogel W-J Verstappen FWA Verhoeven HA Jongsma MA Schwab W BouwmeesterHJ (2003) Terpenoid metabolism in wild-type and transgenic Arabidopsis plants Plant Cell 15 2866-2884

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Alder A Jamil M Marzorati M Bruno M Vermathen M Bigler P Ghisla S Bouwmeester H Beyer P Al-Babili S (2012) The Pathfrom -Carotene to Carlactone a Strigolactone-Like Plant Hormone Science 335 1348-1351

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Arango J Jourdan M Geoffriau E Beyer P Welsch R (2014) Carotene Hydroxylase Activity Determines the Levels of Both -Carotene and Total Carotenoids in Orange Carrots Plant Cell tpc113122127

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Aubert C Ambid C Baumes R Guumlnata Z (2003) Investigation of bound aroma constituents of yellow-fleshed nectarines (Prunuspersica L Cv Springbright) Changes in bound aroma profile during maturation J Agric Food Chem 51 6280-6286

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Auldridge ME Block A Vogel JT Dabney-Smith C Mila I Bouzayen M Magallanes-Lundback M DellaPenna D McCarty DR KleeHJ (2006) Characterization of three members of the Arabidopsis carotenoid cleavage dioxygenase family demonstrates thedivergent roles of this multifunctional enzyme family Plant J 45 982-993

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Avendantildeo-Vaacutezquez AO Cordoba E Llamas E San Romaacuten C Nisar N De la Torre S Ramos-Vega M Gutieacuterrez-Nava M de la LCazzonelli CI Pogson BJ Leoacuten P (2014) An uncharacterized apocarotenoid-derived signal generated in -carotene desaturasemutants regulates leaf development and the expression of chloroplast and nuclear genes in Arabidopsis Plant Celltpc114123349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ballottari M Alcocer MJP DAndrea C Viola D Ahn TK Petrozza A Polli D Fleming GR Cerullo G Bassi R (2014) Regulation ofphotosystem I light harvesting by zeaxanthin Proc Natl Acad Sci USA 111 E2431-2438

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Jahnke S Hofmann D Koppchen S Schurr U Matsubara S (2010) Continuous turnover of carotenes and chlorophyll ain mature leaves of Arabidopsis thaliana revealed by 14CO2 pulse-chase labeling Plant Physiol 152 2188-2199

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Beisel KG Schurr U Matsubara S (2011) Altered turnover of szlig-carotene and Chl a in Arabidopsis leaves treated with lincomycin ornorflurazon Plant Cell Physiol 52 1193-1203

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bonk M Hoffmann B Von Lintig J Schledz M Al-Babili S Hobeika E Kleinig H Beyer P (1997) Chloroplast import of fourcarotenoid biosynthetic enzymes in vitro reveals differential fates prior to membrane binding and oligomeric assembly Eur JBiochem 247 942-950

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Brandi F Bar E Mourgues F Horvaacuteth G Turcsi E Giuliano G Liverani A Tartarini S Lewinsohn E Rosati C (2011) Study ofRedhaven peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid andnorisoprenoid volatile metabolism BMC Plant Biol 11 24

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Bruno M Beyer P Al-Babili S (2015) The Potato Carotenoid Cleavage Dioxygenase 4 Catalyzes a Single Cleavage of -ionone ringcontaining Carotenes and Non-Epoxidated Xanthophylls Arch Biochem Biophys 572 126-133

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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Page 43: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

Bruno M Hofmann M Vermathen M Alder A Beyer P Al-Babili S (2014) On the Substrate- and Stereospecificity of the PlantCarotenoid Cleavage Dioxygenase 7 FEBS Lett 588 1802-1807

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Busch M Seuter A Hain R (2002) Functional analysis of the early steps of carotenoid biosynthesis in tobacco Plant Physiol 128439-453

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Campbell R Ducreux LJM Morris WL Morris J a Suttle JC Ramsay G Bryan GJ Hedley PE Taylor M (2010) The metabolic anddevelopmental roles of carotenoid cleavage dioxygenase 4 from potato (Solanum tuberosum L) Plant Physiol 154 656-664

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cao H Zhang J Xu JJ Ye J Yun Z Xu Q Deng X (2012) Comprehending crystalline szlig-carotene accumulation by comparingengineered cell models and the natural carotenoid-rich system of citrus J Exp Bot 63 4403-4417

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Chen Y Li F Wurtzel ET (2010) Isolation and characterization of the Z-ISO gene encoding a missing component of carotenoidbiosynthesis in plants Plant Physiol 153 66-79

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Cooper CM Davies NW Motti CA Menary RC (2011) Glycosidic conjugates of C13 norisoprenoids monoterpenoids andcucurbates in Boronia megastigma (Nees) J Agric Food Chem 59 2610-2617

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DAbrosca B DellaGreca M Fiorentino A Monaco P Oriano P Temussi F (2004) Structure elucidation and phytotoxicity of C13 nor-isoprenoids from Cestrum parqui Phytochemistry 65 497-505

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

DellaGreca M Di Marino C Zarrelli A and DAbrosca B (2004) Isolation and phytotoxicity of apocarotenoids from Chenopodiumalbum J Nat Prod 67 1492-1495

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Demmig-Adams B Adams WW (2002) Antioxidants in photosynthesis and human nutrition Science 298 2149-2153Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Diretto G Welsch R Tavazza R Mourgues F Pizzichini D Beyer P Giuliano G (2007) Silencing of beta-carotene hydroxylaseincreases total carotenoid and beta-carotene levels in potato tubers BMC Plant Biol 7 11

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Van den Dool H Kratz PD (1963) A generalization of the retention index system including linear temperature programmed gas-liquid partition chromatography J Chromatogr 11 463-471

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Egea I Barsan C Bian W Purgatto E Latcheacute A Chervin C Bouzayen M Pech J-C (2010) Chromoplast differentiation currentstatus and perspectives Plant Cell Physiol 51 1601-1611

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Enzell C (1985) Biodegradation of carotenoids - an important route to aroma compounds Pure Appl Chem 57 693 - 700Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Farmer EE Mueller MJ (2012) ROS-Mediated Lipid Peroxidation and RES-Activated Signaling Annu Rev Plant Biol 64 429-50Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

  • Foliennummer 1
  • Foliennummer 2
  • Foliennummer 3
  • Foliennummer 4
  • Foliennummer 5
  • Foliennummer 6
  • Foliennummer 7
  • Foliennummer 8
  • Foliennummer 9
  • Foliennummer 10
  • Foliennummer 11
  • Foliennummer 12
  • Parsed Citations
  • Reviewer PDF
  • Supplemental Table 1
  • Supplemental Figures
  • Parsed Citations
Page 44: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

Fraser PD Roumlmer S Shipton CA Mills PB Kiano JW Misawa N Drake R Schuch W Bramley PM (2002) Evaluation of transgenictomato plants expressing an additional phytoene synthase in a fruit-specific manner Proc Natl Acad Sci USA 99 1092-1097

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Fray RG Wallace A Fraser PD Valero D Hedden P Bramley PM Grierson D (1995) Constitutive expression of a fruit phytoenesynthase gene in transgenic tomatoes causes dwarfism by redirecting metabolites from the gibberellin pathway Plant J 8 693-701

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Frusciante S Diretto G Bruno M Ferrante P Pietrella M Prado-Cabrero A Rubio-Moraga A Beyer P Gomez-Gomez L Al-BabiliS Giuliano G (2014) Novel carotenoid cleavage dioxygenase catalyzes the first dedicated step in saffron crocin biosynthesisProc Natl Acad Sci 1404629111

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Gonzalez-Jorge S Ha S-H Magallanes-Lundback M Gilliland LU Zhou A Lipka AE Nguyen Y-N Angelovici R Lin H Cepela J etal (2013) CAROTENOID CLEAVAGE DIOXYGENASE4 Is a Negative Regulator of szlig-Carotene Content in Arabidopsis Seeds PlantCell tpc113119677

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Havaux M (2013) Carotenoid oxidation products as stress signals in plants Plant J 79 597-606Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Heacutetu M-F Tremblay LJ Lefebvre DD (2005) High root biomass production in anchored Arabidopsis plants grown in axenic sucrosesupplemented liquid culture Biotechniques 39 345-349

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Huang F-C Horvaacuteth G Molnaacuter P Turcsi E Deli J Schrader J Sandmann G Schmidt H Schwab W (2009) Substrate promiscuity ofRdCCD1 a carotenoid cleavage oxygenase from Rosa damascena Phytochemistry 70 457-64

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Beyer P Al-Babili S (2009) Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranialbiosynthesis FEBS J 276 736-747

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ilg A Bruno M Beyer P Al-Babili S (2014) Tomato carotenoid cleavage dioxygenases 1A and 1B Relaxed double bond specificityleads to a plenitude of dialdehydes mono-apocarotenoids and isoprenoid volatiles FEBS Open Bio 4 584-593

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Isaacson T Ronen G Zamir D Hirschberg J (2002) Cloning of tangerine from Tomato Reveals a Carotenoid Isomerase Essentialfor the Production of beta-Carotene and Xanthophylls in Plants Plant Cell 14 333-342

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Iuchi S Kobayashi M Taji T Naramoto M Seki M Kato T Tabata S Kakubari Y Yamaguchi-Shinozaki K Shinozaki K (2001)Regulation of drought tolerance by gene manipulation of 9-cis-epoxycarotenoid dioxygenase a key enzyme in abscisic acidbiosynthesis in Arabidopsis Plant J 27 325-333

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kalariya NM Ramana K V Srivastava SK van Kuijk FJGM (2011) Post-translational protein modification by carotenoid cleavageproducts Biofactors 37 104-116

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim J DellaPenna D (2006) Defining the primary route for lutein synthesis in plants the role of Arabidopsis carotenoid beta-ringhydroxylase CYP97A3 Proc Natl Acad Sci USA 103 3474-3479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

  • Foliennummer 1
  • Foliennummer 2
  • Foliennummer 3
  • Foliennummer 4
  • Foliennummer 5
  • Foliennummer 6
  • Foliennummer 7
  • Foliennummer 8
  • Foliennummer 9
  • Foliennummer 10
  • Foliennummer 11
  • Foliennummer 12
  • Parsed Citations
  • Reviewer PDF
  • Supplemental Table 1
  • Supplemental Figures
  • Parsed Citations
Page 45: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

Kim J Smith JJ Tian L DellaPenna D (2009) The evolution and function of carotenoid hydroxylases in Arabidopsis Plant CellPhysiol 50 463-479

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kim JE Rensing KH Douglas CJ Cheng KM (2010) Chromoplasts ultrastructure and estimated carotene content in root secondaryphloem of different carrot varieties Planta 231 549-558

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Kloer DP Welsch R Beyer P Schulz GE (2006) Structure and reaction geometry of geranylgeranyl diphosphate synthase fromSinapis alba Biochemistry 45 15197-15204

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lashbrooke JG Young PR Dockrall SJ Vasanth K Vivier MA (2013) Functional characterisation of three members of the Vitisvinifera L carotenoid cleavage dioxygenase gene family BMC Plant Biol 13 156

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Lewis NG Yamamoto E (1990) Lignin occurrence biogenesis and biodegradation Annu Rev Plant Physiol Plant Mol Biol 41 455-96

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Li F Vallabhaneni R Wurtzel ET (2008) PSY3 a new member of the phytoene synthase gene family conserved in the Poaceae andregulator of abiotic stress-induced root carotenogenesis Plant Physiol 146 1333-1345

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Von Lintig J Welsch R Bonk M Giuliano G Batschauer A Kleinig H (1997) Light-dependent regulation of carotenoid biosynthesisoccurs at the level of phytoene synthase expression and is mediated by phytochrome in Sinapis alba and Arabidopsis thalianaseedlings Plant J 12 625-634

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Maass D Arango J Wuumlst F Beyer P Welsch R (2009) Carotenoid crystal formation in Arabidopsis and carrot roots caused byincreased phytoene synthase protein levels PLoS One 4 e6373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Terrier N Procureur J Bigey F Guumlnata Z (2005) A carotenoid cleavage dioxygenase from Vitis vinifera L functionalcharacterization and expression during grape berry development in relation to C13-norisoprenoid accumulation J Exp Bot 562721-2731

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mathieu S Wirth J Sauvage F-X Lepoutre J-P Baumes R Gunata Z (2009) Biotransformation of C13-norisoprenoids andmonoterpenes by a cell suspension culture of cv Gamay (Vitis vinifera) Plant Cell Tissue Organ Cult 97 203-213

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Mendes-Pinto MM (2009) Carotenoid breakdown products the norisoprenoids in wine aroma Arch Biochem Biophys 483 236-245Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nisar N Li L Lu S Khin NC Pogson BJ (2015) Carotenoid Metabolism in Plants Mol Plant 8 68-82Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Niyogi KK (1999) PHOTOPROTECTION REVISITED Genetic and Molecular Approaches Annu Rev Plant Physiol Plant Mol Biol 50333-359

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Nogueira M Mora L Enfissi EMA Bramley PM Fraser PD (2013) Subchromoplast Sequestration of Carotenoids Affects RegulatoryMechanisms in Tomato Lines Expressing Different Carotenoid Gene Combinations Plant Cell tpc113116210

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

  • Foliennummer 1
  • Foliennummer 2
  • Foliennummer 3
  • Foliennummer 4
  • Foliennummer 5
  • Foliennummer 6
  • Foliennummer 7
  • Foliennummer 8
  • Foliennummer 9
  • Foliennummer 10
  • Foliennummer 11
  • Foliennummer 12
  • Parsed Citations
  • Reviewer PDF
  • Supplemental Table 1
  • Supplemental Figures
  • Parsed Citations
Page 46: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Normanly J Bartel B (1999) Redundancy as a way of life - IAA metabolism Curr Opin Plant Biol 2 207-213Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ohmiya A Kishimoto S Aida R Yoshioka S Sumitomo K (2006) Carotenoid cleavage dioxygenase (CmCCD4a) contributes to whitecolor formation in chrysanthemum petals Plant Physiol 142 1193-1201

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Alarcon M Moreno C Bonilla A Barrios J Garzon C Duque C (2006) Characterization of odor-active volatiles in champa(Campomanesia lineatifolia R and P) J Agric Food Chem 54 509-516

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Osorio C Duque C Fujimoto Y (1999) C(13)-Norisoprenoid glucoconjugates from lulo (Solanum quitoense L) leaves J Agric FoodChem 47 1641-1645

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Park H Kreunen SS Cuttriss AJ DellaPenna D Pogson BJ (2002) Identification of the carotenoid isomerase provides insight intocarotenoid biosynthesis prolamellar body formation and photomorphogenesis Plant Cell 14 321-332

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Pogson BJ McDonald KA Truong M Britton G DellaPenna D (1996) Arabidopsis carotenoid mutants demonstrate that lutein is notessential for photosynthesis in higher plants Plant Cell 8 1627-1639

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Cuineacute S Triantaphylidegraves C Ravanat J-L Havaux M (2012a) Chemical quenching of singlet oxygen by carotenoidsin plants Plant Physiol 158 1267-1278

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Birtic S Ginies C Soubigou-Taconnat L Triantaphylidegraves C Havaux M (2012b) Carotenoid oxidation products are stresssignals that mediate gene responses to singlet oxygen in plants Proc Natl Acad Sci USA 109 5535-5540

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ramel F Mialoundama AS Havaux M (2012c) Nonenzymic Carotenoid Oxidation and Photooxidative Stress Signalling in Plants JExp Bot 64 799-805

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodrigo MJ Alqueacutezar B Aloacutes E Medina V Carmona L Bruno M Al-Babili S Zacariacuteas L (2013) A novel carotenoid cleavage activityinvolved in the biosynthesis of Citrus fruit-specific apocarotenoid pigments J Exp Bot 64 4461-4478

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rodriacuteguez-Villaloacuten A Gas E Rodriacuteguez-Concepcioacuten M (2009) Phytoene synthase activity controls the biosynthesis of carotenoidsand the supply of their metabolic precursors in dark-grown Arabidopsis seedlings Plant J 60 424 - 435

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ross J Li Y Lim E-K Bowles D (2001) Higher plant glycosyltransferases Genome Biol 2 reviews30041-reviews30046Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Rubio A Rambla JL Santaella M Goacutemez MD Orzaez D Granell A Goacutemez-Goacutemez L (2008) Cytosolic and plastoglobule-targetedcarotenoid dioxygenases from Crocus sativus are both involved in beta-ionone release J Biol Chem 283 24816-24825

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ruiz-Sola MAacute Rodriacuteguez-Concepcioacuten M (2011) Carotenoid Biosynthesis in Arabidopsis A Colorful Pathway Arab B 10 e0158 wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

  • Foliennummer 1
  • Foliennummer 2
  • Foliennummer 3
  • Foliennummer 4
  • Foliennummer 5
  • Foliennummer 6
  • Foliennummer 7
  • Foliennummer 8
  • Foliennummer 9
  • Foliennummer 10
  • Foliennummer 11
  • Foliennummer 12
  • Parsed Citations
  • Reviewer PDF
  • Supplemental Table 1
  • Supplemental Figures
  • Parsed Citations
Page 47: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schledz M Al-Babili S von Lintig J Haubruck H Rabbani S Kleinig H Beyer P (1996) Phytoene synthase from Narcissuspseudonarcissus functional expression galactolipid requirement topological distribution in chromoplasts and induction duringflowering Plant J 10 781-792

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schwartz SH Simkin AJ Auldridge ME Taylor MG Klee HJ (2004) The tomato carotenoid cleavage dioxygenase 1 genescontribute to the formation of the flavor volatiles beta-ionone pseudoionone and geranylacetone Plant J 40 882-892

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Schweiggert RM Steingass CB Heller A Esquivel P Carle R (2011) Characterization of chromoplasts and carotenoids of red- andyellow-fleshed papaya (Carica papaya L) Planta 234 1031-1044

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Shewmaker C Sheehy J Daley M Colburn S Ke D (1999) Seed-specific overexpression of phytoene synthase increase incarotenoids and other metabolic effects Plant J 20 401-412X

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Simkin AJ Zhu C Kuntz M Sandmann G (2003) Light-dark regulation of carotenoid biosynthesis in pepper (Capsicum annuum)leaves J Plant Physiol 160 439-443

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Sitte P Falk H Liedvogel B (1980) Chromoplasts In F-C Czygan ed Pigment plants 2nd ed Fischer Stuttgart pp 117-148Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Tan B-C Joseph LM Deng W-T Liu L Li Q-B Cline K McCarty DR (2003) Molecular characterization of the Arabidopsis 9 -cisepoxycarotenoid dioxygenase gene family Plant J 35 44-56

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Vogel JT Tan B-C McCarty DR Klee HJ (2008) The carotenoid cleavage dioxygenase 1 enzyme has broad substrate specificitycleaving multiple carotenoids at two different bond positions J Biol Chem 283 11364-11373

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Arango J Bar C Salazar B Al-Babili S Beltran J Chavarriaga P Ceballos H Tohme J Beyer P (2010) Provitamin AAccumulation in Cassava (Manihot esculenta) Roots Driven by a Single Nucleotide Polymorphism in a Phytoene Synthase GenePlant Cell 22 3348-3356

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Beyer P Hugueney P Kleinig H von LJ von Lintig J (2000) Regulation and activation of phytoene synthase a keyenzyme in carotenoid biosynthesis during photomorphogenesis Planta 211 846-854

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Maass D Voegel T Dellapenna D Beyer P (2007) Transcription factor RAP22 and its interacting partner SINAT2 stableelements in the carotenogenesis of Arabidopsis leaves Plant Physiol 145 1073-1085

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Welsch R Wuumlst F Baumlr C Al-Babili S Beyer P (2008) A third phytoene synthase is devoted to abiotic stress-induced abscisic acidformation in rice and defines functional diversification of phytoene synthase genes Plant Physiol 147 367-380

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Rouseff RL (2001) Carotenoid-Derived Aroma Compounds (Acs Symposium Series) 1-17Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title wwwplantphysiolorgon May 29 2020 - Published by Downloaded from

Copyright copy 2015 American Society of Plant Biologists All rights reserved

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

wwwplantphysiolorgon May 29 2020 - Published by Downloaded from Copyright copy 2015 American Society of Plant Biologists All rights reserved

  • Foliennummer 1
  • Foliennummer 2
  • Foliennummer 3
  • Foliennummer 4
  • Foliennummer 5
  • Foliennummer 6
  • Foliennummer 7
  • Foliennummer 8
  • Foliennummer 9
  • Foliennummer 10
  • Foliennummer 11
  • Foliennummer 12
  • Parsed Citations
  • Reviewer PDF
  • Supplemental Table 1
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Page 48: 1 Running Title: Apocarotenoid Glycosides in Arabidopsis 2 · 29 phytoene synthase, Arabidopsis, apocarotenoids, apocarotenoid glycosides, norisoprenoids, 30 carotene hydroxylase,

Winterhalter P Schreier P (1995) The generation of norisoprenoid volatiles in starfruit (Averrhoa carambola L) A review FoodRev Int 11 237-254

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Winterhalter P Skouroumounis GK (1997) Glycoconjugated aroma compounds occurrence role and biotechnologicaltransformation Adv Biochem Eng Biotechnol 55 73-105

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Wirth J Guo W Baumes R Guumlnata Z (2001) Volatile compounds released by enzymatic hydrolysis of glycoconjugates of leaves andgrape berries from Vitis vinifera Muscat of Alexandria and Shiraz cultivars J Agric Food Chem 49 2917-2923

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yamamizo C Kishimoto S Ohmiya A (2010) Carotenoid composition and carotenogenic gene expression during Ipomoea petaldevelopment J Exp Bot 61 709-719

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yan J Kandianis CB Harjes CE Bai L Kim E-H Yang X Skinner DJ Fu Z Mitchell S Li Q et al (2010) Rare genetic variation atZea mays crtRB1 increases beta-carotene in maize grain Nat Genet 42 322-327

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ye X Al-Babili S Kloumlti A Zhang J Lucca P Beyer P Potrykus I (2000) Engineering the Provitamin A (-Carotene) BiosyntheticPathway into (Carotenoid-Free) Rice Endosperm Science 287 303-305

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Ytterberg AJ Peltier J-B van Wijk KJ (2006) Protein profiling of plastoglobules in chloroplasts and chromoplasts A surprising sitefor differential accumulation of metabolic enzymes Plant Physiol 140 984-997

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Yu Q Ghisla S Hirschberg J Mann V Beyer P (2011) Plant carotene cis-trans isomerase CRTISO a new member of the FADred-dependent flavoproteins catalyzing non-redox reactions J Biol Chem 286 8666-8676

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

Zhou X Welsch R Yang Y Aacutelvarez D Riediger M Yuan H Fish T Liu J Thannhauser TW Li L (2015) Arabidopsis OR proteins arethe major post-transcriptional regulators of phytoene synthase in controlling carotenoid biosynthesis Proc Natl Acad Sci 1123558-3563

Pubmed Author and TitleCrossRef Author and TitleGoogle Scholar Author Only Title Only Author and Title

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